Unique_ID	MSGI_ID	RPKM_708_ES	RPKM_708_PES	RPKM_773_ES	RPKM_773_PES	708_Log2(PES/ES)	773_Log2(PES/ES)	ES_Log2(708/773)	PES_Log2(708/773)	MapMan_Class	DESCRIPTION
MSGI1_17353	124567560	18.8	26.6	344.6	22.6	0	-3.9	-4.2	0	minor CHO metabolism.myo-inositol.InsP Synthases	inositol-3-phosphate synthase isozyme 2 / myo-inositol-1-phosphate synthase 2 / MI-1-P synthase 2 / IPS 2  Identical to Inositol-3-phosphate synthase isozyme 2 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 2) (MI-1-P synthase 2) (IPS 2) [Arabidopsis T
MSGI1_111036	124567563	10	14	46.1	16.7	0	-1.5	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_28971	124567581	89.7	112.5	216	115.2	0	0	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_86404	136141125	1	2	15.7	2.8	0	0	-4	0	development.unspecified	"ripening-responsive protein, putative  similar to antiporter [Arabidopsis thaliana] (TAIR:AT5G10420.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT5G44050.1); similar to ripening regulated protein DDTFR18 [Lycopersicon esculentu"
MSGI1_56221	136141129	232.8	134.1	96.4	205.4	0	1.1	1.3	0	glycolysis.enolase	LOS2 (Low expression of osmotically responsive genes 1); phosphopyruvate hydratase Involved in light-dependent cold tolerance and encodes an enolase. Identical to Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase) (2-phospho-D- glycerate hydro-lyase)
MSGI1_113111	136141162	11.1	22.9	131.9	18.8	0	-2.8	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_32600	136141170	1.9	2.7	58.2	2.5	0	-4.5	-4.9	0	minor CHO metabolism.myo-inositol.InsP Synthases	"inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative  Identical to Probable inositol-3-phosphate synthase isozyme 3 (EC 5.5.1.4) (Myo- inositol-1-phosphate synthase 3) (MI-1-P synthase 3) (IPS"
MSGI1_100601	136141176	4.8	37.3	70.6	54	3	0	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_29951	136141179	52.8	28.9	20.4	40.1	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_73537	136141193	15.6	21.7	48.2	23	0	0	-1.6	0	transport.calcium	"ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8); calcium-transporting ATPase/ calmodulin binding Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the"
MSGI1_112868	136141203	2	1.6	20	3.6	0	-2.5	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_105073	136141318	27.6	29.8	92.7	49.1	0	0	-1.7	0	redox.ascorbate and glutathione	"ATMDAR1 (MONODEHYDROASCORBATE REDUCTASE 1); monodehydroascorbate reductase (NADH) Encodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2 Identical to Probable monodehydroascorbate reduct"
MSGI1_61800	136141319	0.4	0.2	6.6	13.8	0	0	0	-6.1	transport.misc	"chloroplast ADP, ATP carrier protein 1 / ADP, ATP translocase 1 / adenine nucleotide translocase 1 (AATP1)  Identical to Chloroplast ADP,ATP carrier protein 1, chloroplast precursor (ADP/ATP translocase 1) (Adenine nucleotide translocase 1) (AATP1) [Arab"
MSGI1_26863	136141330	52.6	26.5	44.8	61.3	0	0	0	-1.2	C1-metabolism.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_26863	136141330	52.6	26.5	44.8	61.3	0	0	0	-1.2	amino acid metabolism.synthesis.serine-glycine-cysteine group.glycine.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_26863	136141330	52.6	26.5	44.8	61.3	0	0	0	-1.2	PS.photorespiration.serine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_24565	136141360	25.5	44.4	15.1	12.4	0	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_33631	136141368	133.7	74.6	42.3	61.9	0	0	1.7	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L17 (RPL17A)  Identical to 60S ribosomal protein L17-1 (RPL17A) [Arabidopsis Thaliana] (GB:Q93VI3;GB:Q9FZJ5); similar to 60S ribosomal protein L17 (RPL17B) [Arabidopsis thaliana] (TAIR:AT1G67430.1); similar to ribosomal protein [Pet
MSGI1_17972	136141426	5.5	4.2	23.2	8.5	0	0	-2.1	0	"RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family"	zinc finger (B-box type) family protein  Identical to Zinc finger protein CONSTANS-LIKE 16 (COL16) [Arabidopsis Thaliana] (GB:Q8RWD0;GB:Q9C6L4); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT1G68520.1); similar to zinc
MSGI1_45897	136141429	0.8	1.1	11.2	13.5	0	0	0	-3.6	protein.postranslational modification	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G25760.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G18190.2); similar to protein kinase family protein [Arabidopsis th
MSGI1_79059	136141437	4.6	13.8	38	26.3	0	0	-3	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_79059	136141437	4.6	13.8	38	26.3	0	0	-3	0	hormone metabolism.ethylene.induced-regulated-responsive-activated	"universal stress protein (USP) family protein  similar to ethylene-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G09740.1); similar to universal stress protein family [Medicago truncatula] (GB:ABE78101.1); contains InterPro domain Universa"
MSGI1_74914	136141451	4.4	2.9	109.8	13.4	0	-3	-4.6	0	major CHO metabolism.degradation.starch.starch cleavage	"BMY7/TR-BAMY (beta-amylase 7); beta-amylase  similar to CT-BMY (BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to beta-amylase 1 [Nicotiana langsdorffii x Nicotiana sanderae] (GB:AAY89374.1); similar to putative chloropl"
MSGI1_17971	136141461	17.2	4.6	40.8	9.8	0	-2.1	0	0	protein.targeting	PSB29 (THYLAKOID FORMATION1) Chloroplast-localized Thylakoid formation1 gene product involved in vesicle-mediated formation of thylakoid membranes.  Thf1 antisense lines contain abnormal chloroplasts early in leaf development (chloroplasts have loosely s
MSGI1_91238	136141479	115.9	56.3	48.1	125.4	-1	1.4	1.3	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_14225	136141520	75.3	122.2	1.6	0.9	0	0	5.6	7.1	not assigned.unknown	not assigned.unknown
MSGI1_63189	136141526	24.8	7	34.2	10.7	0	-1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_22363	136141539	1.7	3	35.2	2.1	0	-4.1	-4.4	0	minor CHO metabolism.myo-inositol.InsP Synthases	"inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative  Identical to Probable inositol-3-phosphate synthase isozyme 3 (EC 5.5.1.4) (Myo- inositol-1-phosphate synthase 3) (MI-1-P synthase 3) (IPS"
MSGI1_32599	136141548	3.5	1.1	782.9	6.9	0	-6.8	-7.8	0	not assigned.unknown	not assigned.unknown
MSGI1_14564	136141602	7.8	14.1	49.9	16.3	0	-1.6	-2.7	0	major CHO metabolism.degradation.sucrose.Susy	"SUS3; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups Encodes a protein with sucrose synthase activity (SUS3). similar to SUS1 (SUCROSE SYNTHASE 1), UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TA"
MSGI1_14564	136141602	7.8	14.1	49.9	16.3	0	-1.6	-2.7	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_14564	136141602	7.8	14.1	49.9	16.3	0	-1.6	-2.7	0	cell wall	"SUS3; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups Encodes a protein with sucrose synthase activity (SUS3). similar to SUS1 (SUCROSE SYNTHASE 1), UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TA"
MSGI1_95745	136141612	75.3	46.9	218.6	32.3	0	-2.8	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_16899	136141624	16.1	210.4	223.9	579.9	3.7	1.4	-3.8	-1.5	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_26044	136141635	0.3	0.3	11.6	6.5	0	0	-5.3	0	RNA.regulation of transcription.putative transcription regulator	transcription factor-related  similar to methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04830.1); similar to putative methionine sulfoxide reductase B [Oryza sativa (japonica cult
MSGI1_114840	136141636	17.1	12.2	41.6	36.7	0	0	0	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_38511	136141647	42.4	47.3	1.7	10.1	0	0	4.6	2.2	amino acid metabolism.synthesis.aspartate family.methionine.cystathionine beta-lyase	"MTO1 (METHIONINE OVERACCUMULATION 1) encodes a cystathionine gamma-synthase, which performs the first committed step in methionine biosynthesis. A conserved motif of 13 amino acids in the first exon is required for posttranscriptional autoregulation. Thi"
MSGI1_21873	136141652	7.1	15.1	74.1	17.2	0	-2.1	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_27877	136141663	0.7	1.8	19.1	6.2	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_12648	136141667	275.2	87.5	1757.6	157	-1.7	-3.5	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_15424	136141669	8	12.6	136.9	10.9	0	-3.7	-4.1	0	minor CHO metabolism.myo-inositol.InsP Synthases	inositol-3-phosphate synthase isozyme 2 / myo-inositol-1-phosphate synthase 2 / MI-1-P synthase 2 / IPS 2  Identical to Inositol-3-phosphate synthase isozyme 2 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 2) (MI-1-P synthase 2) (IPS 2) [Arabidopsis T
MSGI1_17820	136141688	7.4	9.9	111.4	7.7	0	-3.9	-3.9	0	minor CHO metabolism.myo-inositol.InsP Synthases	inositol-3-phosphate synthase isozyme 2 / myo-inositol-1-phosphate synthase 2 / MI-1-P synthase 2 / IPS 2  Identical to Inositol-3-phosphate synthase isozyme 2 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 2) (MI-1-P synthase 2) (IPS 2) [Arabidopsis T
MSGI1_10984	136141694	47	113.4	205.2	74.8	1.3	-1.5	-2.1	0	stress.abiotic.heat	HSP70 (heat shock protein 70); ATP binding  similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G
MSGI1_18551	136141703	72.3	104.5	165	143.1	0	0	-1.2	0	protein.degradation.serine protease	CLPC (HEAT SHOCK PROTEIN 93-V); ATP binding / ATPase Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at th
MSGI1_19418	136141704	12.3	15.9	48.5	3.3	0	-3.9	-2	0	stress.abiotic.unspecified	SAG21 (SENESCENCE-ASSOCIATED GENE 21) Encodes AtLEA5 (late embryogenesis abundant like protein).  Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21).  Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses. sim
MSGI1_19418	136141704	12.3	15.9	48.5	3.3	0	-3.9	-2	0	development.late embryogenesis abundant	SAG21 (SENESCENCE-ASSOCIATED GENE 21) Encodes AtLEA5 (late embryogenesis abundant like protein).  Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21).  Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses. sim
MSGI1_10819	136141709	87.3	110.9	73.8	149.9	0	1	0	0	redox.ascorbate and glutathione.ascorbate	"VTC2 (VITAMIN C DEFECTIVE 2) a gene encoding a novel protein is involved in ascorbate biosynthesis. recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxan"
MSGI1_69903	136141731	56.7	25.4	11.5	15.8	-1.2	0	2.3	0	amino acid metabolism.synthesis.serine-glycine-cysteine group.glycine.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_69903	136141731	56.7	25.4	11.5	15.8	-1.2	0	2.3	0	C1-metabolism.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_69903	136141731	56.7	25.4	11.5	15.8	-1.2	0	2.3	0	PS.photorespiration.serine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_10983	136141734	4.9	9.3	27.4	9.9	0	0	-2.5	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_10983	136141734	4.9	9.3	27.4	9.9	0	0	-2.5	0	hormone metabolism.ethylene.synthesis-degradation	"2-oxoglutarate-dependent dioxygenase, putative A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC synthase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene i"
MSGI1_51512	136141752	16.9	16.9	28.2	75.8	0	1.4	0	-2.2	PS.calvin cyle.aldolase	"fructose-bisphosphate aldolase, putative  similar to fructose-bisphosphate aldolase, cytoplasmic [Arabidopsis thaliana] (TAIR:AT4G26520.1); similar to fructose-bisphosphate aldolase [Pandanus amaryllifolius] (GB:AAR88661.1); contains InterPro domain Fruc"
MSGI1_51512	136141752	16.9	16.9	28.2	75.8	0	1.4	0	-2.2	glycolysis.aldolase	"fructose-bisphosphate aldolase, putative  similar to fructose-bisphosphate aldolase, cytoplasmic [Arabidopsis thaliana] (TAIR:AT4G26520.1); similar to fructose-bisphosphate aldolase [Pandanus amaryllifolius] (GB:AAR88661.1); contains InterPro domain Fruc"
MSGI1_21663	136141773	5.1	10.7	31.3	5.9	0	-2.4	-2.6	0	minor CHO metabolism.myo-inositol.InsP Synthases	"inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative  Identical to Probable inositol-3-phosphate synthase isozyme 3 (EC 5.5.1.4) (Myo- inositol-1-phosphate synthase 3) (MI-1-P synthase 3) (IPS"
MSGI1_13454	136141782	2.3	5	17.8	2.1	0	-3.1	-3	0	minor CHO metabolism.myo-inositol.InsP Synthases	"MI-1-P SYNTHASE (Myo-inositol-1-phosphate synthase); inositol-3-phosphate synthase Columbia myo-inositol-1-phosphate synthase mRNA, complete Identical to Inositol-3-phosphate synthase isozyme 1 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 1) (MI-1-P"
MSGI1_96533	136141788	10.5	4.5	2579.8	15.9	0	-7.3	-7.9	0	not assigned.unknown	not assigned.unknown
MSGI1_14811	136141794	5.2	8.2	119.8	6.3	0	-4.2	-4.5	0	minor CHO metabolism.myo-inositol.InsP Synthases	inositol-3-phosphate synthase isozyme 2 / myo-inositol-1-phosphate synthase 2 / MI-1-P synthase 2 / IPS 2  Identical to Inositol-3-phosphate synthase isozyme 2 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 2) (MI-1-P synthase 2) (IPS 2) [Arabidopsis T
MSGI1_21187	136141802	19.1	26.1	99.7	20.5	0	-2.3	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_46352	136141809	14.8	11	22.6	42.9	0	0	0	-2	cell.organisation	"plastid-lipid associated protein PAP, putative  Identical to Probable plastid-lipid-associated protein 3, chloroplast precursor (AtPap3) (Fibrillin-3) (PAP3) [Arabidopsis Thaliana] (GB:O82291;GB:Q94B19); similar to FIB (FIBRILLIN), structural molecule [A"
MSGI1_37874	136141813	26.1	12.1	27.8	90.9	0	1.7	0	-2.9	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G62510.1); similar to 14 kDa polypeptide [Catharanthus rose
MSGI1_16001	136141814	0	0	9.9	18.8	0	0	0	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_24652	136141831	0	0	48.6	37.6	0	0	-6.6	-6.2	not assigned.unknown	not assigned.unknown
MSGI1_17652	136141840	7.3	9.2	27.3	4.9	0	-2.5	-1.9	0	stress.abiotic.drought/salt	"ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis. similar to senescence/dehydration-associated protein-"
MSGI1_17652	136141840	7.3	9.2	27.3	4.9	0	-2.5	-1.9	0	development.unspecified	"ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis. similar to senescence/dehydration-associated protein-"
MSGI1_22361	136141849	1.6	2.9	23.6	2.2	0	-3.4	-3.9	0	minor CHO metabolism.myo-inositol.InsP Synthases	"inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative  Identical to Probable inositol-3-phosphate synthase isozyme 3 (EC 5.5.1.4) (Myo- inositol-1-phosphate synthase 3) (MI-1-P synthase 3) (IPS"
MSGI1_55414	136141858	67.5	113.4	141.4	110.2	0	0	-1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_76420	136141867	3	3.7	20.7	4.4	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_29731	136141911	32.7	35.9	23.6	67.5	0	1.5	0	0	major CHO metabolism.synthesis.starch.AGPase	ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1); glucose-1-phosphate adenylyltransferase Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. T
MSGI1_27790	136142012	15.7	40.4	44.7	16.8	1.4	-1.4	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_67336	136142033	40.3	23.2	63.8	5.6	0	-3.5	0	2.1	"misc.gluco-, galacto- and mannosidases"	"BGAL8 (beta-glactosidase 8); beta-galactosidase putative beta-galactosidase (BGAL8 gene) similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL9 (BETA GALACTOSIDASE 9), beta-galactosidase [A"
MSGI1_67336	136142033	40.3	23.2	63.8	5.6	0	-3.5	0	2.1	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL8 (beta-glactosidase 8); beta-galactosidase putative beta-galactosidase (BGAL8 gene) similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL9 (BETA GALACTOSIDASE 9), beta-galactosidase [A"
MSGI1_45488	136142050	3.9	4.5	49.2	1.5	0	-5	-3.7	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"DIN10 (DARK INDUCIBLE 10); hydrolase, hydrolyzing O-glycosyl compounds encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. In"
MSGI1_22669	136142055	103	201.9	304.8	98.1	0	-1.6	-1.6	1	not assigned.unknown	not assigned.unknown
MSGI1_28746	136142077	25.7	27.1	47.2	18.8	0	-1.3	0	0	misc.peroxidases	PRXR1 (peroxidase 42); peroxidase Encodes AT4g21960 (AT4g21960/T8O5_170). Identical to Peroxidase 42 precursor (EC 1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b) (PER42) [Arabidopsis Thaliana] (GB:Q9SB81;GB:Q41937;GB:Q42579;GB:Q43730); similar to peroxida
MSGI1_28745	136142088	179.6	193.3	757.7	311	0	-1.3	-2.1	0	misc.peroxidases	PRXR1 (peroxidase 42); peroxidase Encodes AT4g21960 (AT4g21960/T8O5_170). Identical to Peroxidase 42 precursor (EC 1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b) (PER42) [Arabidopsis Thaliana] (GB:Q9SB81;GB:Q41937;GB:Q42579;GB:Q43730); similar to peroxida
MSGI1_43995	136142164	1.3	2.9	28.4	3.4	0	-3.1	-4.4	0	not assigned.unknown	not assigned.unknown
MSGI1_52785	136142208	235.9	175.2	272.1	470.6	0	0	0	-1.4	PS.photorespiration.glycolate oxydase	"(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative  Identical to Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 (EC 1.1.3.15) (Glycolate oxidase 1) (GOX 1) (Short chain al"
MSGI1_88427	146148686	31.9	23.9	63.4	7.2	0	-3.1	0	0	"misc.gluco-, galacto- and mannosidases"	"BGAL8 (beta-glactosidase 8); beta-galactosidase putative beta-galactosidase (BGAL8 gene) similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL9 (BETA GALACTOSIDASE 9), beta-galactosidase [A"
MSGI1_88427	146148686	31.9	23.9	63.4	7.2	0	-3.1	0	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL8 (beta-glactosidase 8); beta-galactosidase putative beta-galactosidase (BGAL8 gene) similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL9 (BETA GALACTOSIDASE 9), beta-galactosidase [A"
MSGI1_54647	146148689	15.6	19.8	0.7	1.2	0	0	4.5	4	misc.short chain dehydrogenase/reductase (SDR)	short-chain dehydrogenase/reductase (SDR) family protein  similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G04070.1); similar to ALTE [Homo sapiens] (GB:AAQ89208.1); similar to Os09g0346600 [Oryza sativa
MSGI1_22746	146148704	14.2	31.4	102	18.4	0	-2.5	-2.8	0	stress.abiotic.heat	"J8; heat shock protein binding / unfolded protein binding J8 mRNA, nuclear gene encoding plastid protein, complete Identical to Chaperone protein dnaJ 8, chloroplast precursor (AtJ8) (AtDjC8) (ATJ8) [Arabidopsis Thaliana] (GB:Q9SAG8;GB:Q9ZSN1); similar t"
MSGI1_10026	146148705	156.8	43.1	27.4	35.8	-1.9	0	2.5	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	"CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding Subunit of light-harvesting complex II (LHCII),which absorbs light and transfers energy to the photosynthetic reaction center. Identical to Chlorophyll a-b binding protein 2, chloroplast precu"
MSGI1_18873	146148709	121.8	256.6	162.2	199.2	1.1	0	0	0	protein.degradation.ubiquitin.E2	UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase ubiquitin conjugating enzyme Identical to SUMO-conjugating enzyme UBC9 (EC 6.3.2.-) (Ubiquitin-conjugating enzyme E2-17 kDa) (Ubiquitin-protein ligase 9) (Ubiquitin carrier protein 9) (UBCAT
MSGI1_94225	146148731	14.7	72.2	46.2	8.7	2.3	-2.4	-1.7	3.1	not assigned.unknown	not assigned.unknown
MSGI1_26757	146148734	20.8	13.9	32.4	7.1	0	-2.2	0	0	transporter.sugars	"ATINT1 (INOSITOL TRANSPORTER 1); carbohydrate transporter/ sugar porter  Identical to Probable inositol transporter 1 (INT1) [Arabidopsis Thaliana] (GB:Q8VZR6;GB:O22848); similar to ATINT2 (INOSITOL TRANSPORTER 2), carbohydrate transporter/ sugar porter"
MSGI1_26756	146148737	17.1	12.6	26.4	7.2	0	-1.9	0	0	transporter.sugars	"ATINT1 (INOSITOL TRANSPORTER 1); carbohydrate transporter/ sugar porter  Identical to Probable inositol transporter 1 (INT1) [Arabidopsis Thaliana] (GB:Q8VZR6;GB:O22848); similar to ATINT2 (INOSITOL TRANSPORTER 2), carbohydrate transporter/ sugar porter"
MSGI1_29466	146148752	65	55.3	32	62.5	0	1	1	0	tetrapyrrole synthesis.magnesium chelatase	GUN5 (GENOMES UNCOUPLED 5) Encodes magnesium chelatase involved in plastid-to-nucleus signal transduction. similar to Mg protoporphyrin IX chelatase [Nicotiana tabacum] (GB:AAB97152.1); similar to protoporphyrin IX:Mg Chelatase [Antirrhinum majus] (GB:CA
MSGI1_39346	146148783	5.2	11.6	31.3	6.5	0	-2.3	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_33767	146148785	73.2	39.7	19.8	36.1	0	0	1.9	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S16 (RPS16A)  Identical to 40S ribosomal protein S16-3 (RPS16C) [Arabidopsis Thaliana] (GB:Q42340); Identical to 40S ribosomal protein S16-1 (RPS16A) [Arabidopsis Thaliana] (GB:Q9SK22); similar to 40S ribosomal protein S16 (RPS16C) [
MSGI1_22667	146148788	1.3	2.3	17.2	1.3	0	-3.7	-3.7	0	minor CHO metabolism.myo-inositol.InsP Synthases	"inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative  Identical to Probable inositol-3-phosphate synthase isozyme 3 (EC 5.5.1.4) (Myo- inositol-1-phosphate synthase 3) (MI-1-P synthase 3) (IPS"
MSGI1_10936	146148803	54.5	76.7	154	64.7	0	-1.3	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_17148	146148831	6.2	10.8	105.7	7.5	0	-3.8	-4.1	0	minor CHO metabolism.myo-inositol.InsP Synthases	inositol-3-phosphate synthase isozyme 2 / myo-inositol-1-phosphate synthase 2 / MI-1-P synthase 2 / IPS 2  Identical to Inositol-3-phosphate synthase isozyme 2 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 2) (MI-1-P synthase 2) (IPS 2) [Arabidopsis T
MSGI1_79058	146148835	34.2	27.5	10.4	16.5	0	0	1.7	0	tetrapyrrole synthesis.magnesium chelatase	GUN5 (GENOMES UNCOUPLED 5) Encodes magnesium chelatase involved in plastid-to-nucleus signal transduction. similar to Mg protoporphyrin IX chelatase [Nicotiana tabacum] (GB:AAB97152.1); similar to protoporphyrin IX:Mg Chelatase [Antirrhinum majus] (GB:CA
MSGI1_22290	146148836	5.8	8.3	63.9	2.8	0	-4.5	-3.5	0	minor CHO metabolism.myo-inositol.InsP Synthases	"inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative  Identical to Probable inositol-3-phosphate synthase isozyme 3 (EC 5.5.1.4) (Myo- inositol-1-phosphate synthase 3) (MI-1-P synthase 3) (IPS"
MSGI1_61071	146148840	25.7	35.6	168.1	65.1	0	-1.4	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_86403	146148854	0.5	3.6	13.7	8	0	0	-4.8	0	development.unspecified	"GI (GIGANTEA) Together with CONSTANTS (CO) and FLOWERING LOCUS T (FT), GIGANTEA promotes flowering under long days in a circadian clock-controlled flowering pathway. GI acts earlier than CO and FT in the pathway by increasing CO and FT mRNA abundance. Lo"
MSGI1_58244	146148856	13	3.9	43.1	4.2	0	-3.4	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_15567	146148868	7.3	14.1	47.6	5.7	0	-3.1	-2.7	0	minor CHO metabolism.myo-inositol.InsP Synthases	inositol-3-phosphate synthase isozyme 2 / myo-inositol-1-phosphate synthase 2 / MI-1-P synthase 2 / IPS 2  Identical to Inositol-3-phosphate synthase isozyme 2 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 2) (MI-1-P synthase 2) (IPS 2) [Arabidopsis T
MSGI1_43805	146148869	29.8	55.9	34.8	24.6	0	0	0	1.2	not assigned.unknown	not assigned.unknown
MSGI1_17770	146148870	7.7	16	66.8	7.3	0	-3.2	-3.1	0	minor CHO metabolism.myo-inositol.InsP Synthases	inositol-3-phosphate synthase isozyme 2 / myo-inositol-1-phosphate synthase 2 / MI-1-P synthase 2 / IPS 2  Identical to Inositol-3-phosphate synthase isozyme 2 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 2) (MI-1-P synthase 2) (IPS 2) [Arabidopsis T
MSGI1_25569	146148886	1757.8	2067.1	804	1505.2	0	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_8532	146148894	14.9	7.1	12.6	29.5	0	0	0	-2.1	cell wall	"aminomethyltransferase, putative  Identical to Aminomethyltransferase, mitochondrial precursor (EC 2.1.2.10) (Glycine cleavage system T protein) (GCVT) (GDCST) [Arabidopsis Thaliana] (GB:O65396;GB:Q42123); similar to unknown protein [Arabidopsis thaliana"
MSGI1_8532	146148894	14.9	7.1	12.6	29.5	0	0	0	-2.1	amino acid metabolism.degradation.serine-glycine-cysteine group.glycine	"aminomethyltransferase, putative  Identical to Aminomethyltransferase, mitochondrial precursor (EC 2.1.2.10) (Glycine cleavage system T protein) (GCVT) (GDCST) [Arabidopsis Thaliana] (GB:O65396;GB:Q42123); similar to unknown protein [Arabidopsis thaliana"
MSGI1_22451	146148896	2.7	5.5	63.3	4.6	0	-3.8	-4.6	0	minor CHO metabolism.myo-inositol.InsP Synthases	"inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative  Identical to Probable inositol-3-phosphate synthase isozyme 3 (EC 5.5.1.4) (Myo- inositol-1-phosphate synthase 3) (MI-1-P synthase 3) (IPS"
MSGI1_17401	146148902	7.2	10.6	115.9	6.9	0	-4.1	-4	0	minor CHO metabolism.myo-inositol.InsP Synthases	inositol-3-phosphate synthase isozyme 2 / myo-inositol-1-phosphate synthase 2 / MI-1-P synthase 2 / IPS 2  Identical to Inositol-3-phosphate synthase isozyme 2 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 2) (MI-1-P synthase 2) (IPS 2) [Arabidopsis T
MSGI1_24028	146148921	11.4	19.7	212.8	13.1	0	-4	-4.2	0	minor CHO metabolism.myo-inositol.InsP Synthases	"inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative  Identical to Probable inositol-3-phosphate synthase isozyme 3 (EC 5.5.1.4) (Myo- inositol-1-phosphate synthase 3) (MI-1-P synthase 3) (IPS"
MSGI1_11196	146148925	200.5	305.3	547.7	147.7	0	-1.9	-1.4	1	not assigned.unknown	not assigned.unknown
MSGI1_21937	146148940	0	0	11.1	0.2	0	-5.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_18944	146148943	448.9	116.6	63.8	87	-1.9	0	2.8	0	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_58568	146148954	8.4	1.9	22.1	0.7	0	-5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_56525	146148965	73	133.1	161.1	120.7	0	0	-1.1	0	polyamine metabolism.synthesis.SAM decarboxylase	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase Encodes a S-adenosylmethionine decarboxylase involved in polyamine biosynthesis. Identical to S-adenosylmethionine decarboxylase proenzyme 1 (EC 4.1.1.50) (AdoMetDC 1) (SamDC 1)
MSGI1_87727	146148983	0.4	0.1	281.7	1.7	0	-7.4	-9.5	0	not assigned.unknown	not assigned.unknown
MSGI1_21186	146148989	55.2	94	55	46.4	0	0	0	1	not assigned.unknown	not assigned.unknown
MSGI1_111401	146148998	3.4	6	19.8	9.2	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_22600	146149020	2.7	6.2	50.4	3.2	0	-4	-4.2	0	minor CHO metabolism.myo-inositol.InsP Synthases	"inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative  Identical to Probable inositol-3-phosphate synthase isozyme 3 (EC 5.5.1.4) (Myo- inositol-1-phosphate synthase 3) (MI-1-P synthase 3) (IPS"
MSGI1_17502	146149024	3.7	5.7	62.3	5.4	0	-3.5	-4.1	0	minor CHO metabolism.myo-inositol.InsP Synthases	inositol-3-phosphate synthase isozyme 2 / myo-inositol-1-phosphate synthase 2 / MI-1-P synthase 2 / IPS 2  Identical to Inositol-3-phosphate synthase isozyme 2 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 2) (MI-1-P synthase 2) (IPS 2) [Arabidopsis T
MSGI1_8327	156025101	76.7	33	22.3	23.6	-1.2	0	1.8	0	cell wall.precursor synthesis.UGD	"UDP-glucose 6-dehydrogenase, putative  similar to ATUGD1/UGD1 (UDP-glucose dehydrogenase 1), UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G26570.1); similar to UDP-glucose 6-dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G39320.1)"
MSGI1_9471	156025107	14.7	20.4	46.4	54	0	0	-1.7	-1.4	TCA / org. transformation.other organic acid transformaitons.malic	"ATNADP-ME4 (NADP-MALIC ENZYME 4); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME4 is localized to chloroplast"
MSGI1_16997	156025108	2.3	2.3	32.7	0.9	0	-5.2	-3.8	0	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN1 (DARK INDUCIBLE 6) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumul"
MSGI1_10128	157973294	65	35.5	51	80.1	0	0	0	-1.2	PS.calvin cyle.GAP	GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase Encodes one of the two subunits forming the photosynthetic glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and as such a constituent of the supramolecula
MSGI1_7619	157973306	94.7	55.6	38.2	72.1	0	0	1.3	0	protein.synthesis.misc ribososomal protein	"EMB3010 (EMBRYO DEFECTIVE 3010); structural constituent of ribosome  Identical to 40S ribosomal protein S6-2 (RPS6B) [Arabidopsis Thaliana] (GB:P51430;GB:O04670;GB:Q9LX91); similar to RPS6 (RIBOSOMAL PROTEIN S6), structural constituent of ribosome [Arabi"
MSGI1_11996	157973314	14.4	45.6	5.5	11.7	1.7	0	0	2	not assigned.unknown	not assigned.unknown
MSGI1_7202	157973320	33.3	10	13.3	9.6	-1.7	0	0	0	cell wall.degradation.pectate lyases and polygalacturonases	pectate lyase family protein  Identical to Probable pectate lyase 22 precursor (EC 4.2.2.2) [Arabidopsis Thaliana] (GB:Q93Z25;GB:Q9FMK5); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G24780.1); similar to pectate lyase family p
MSGI1_16443	157973321	55.9	23.5	114.6	27	-1.3	-2.1	0	0	cell wall	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_16443	157973321	55.9	23.5	114.6	27	-1.3	-2.1	0	0	lipid metabolism.lipid transfer proteins etc	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_11810	157973323	30.6	6.2	17.1	20.4	-2.3	0	0	0	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_17715	157973326	46.8	18.5	94.2	12.5	-1.3	-2.9	0	0	lipid metabolism.lipid transfer proteins etc	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_17715	157973326	46.8	18.5	94.2	12.5	-1.3	-2.9	0	0	cell wall	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_10868	157973328	34.6	24.9	0.1	0	0	0	8.4	5.6	cell wall.cell wall proteins	extensin family protein  similar to 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G12430.1); similar to Extensin-like re (GB:ABD65126.1); contains InterPro domain 3' (InterPro:IPR002562); contains InterPro domain Polynucleo
MSGI1_14115	157973329	4	19.7	9.5	13.3	2.3	0	0	0	cell wall.cell wall proteins.LRR	leucine-rich repeat family protein  similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT2G15880.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT
MSGI1_10417	157973330	0.5	0.5	19.9	33.6	0	0	-5.3	-6.1	protein.synthesis.misc ribososomal protein	40S ribosomal protein S7 (RPS7A)  Identical to 40S ribosomal protein S7-1 (RPS7A) [Arabidopsis Thaliana] (GB:Q9C514); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.2); similar to 40S ribosomal protein S7-like protein [
MSGI1_14809	157973350	114.1	63.1	31.3	68.3	0	1.1	1.9	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S9 (RPS9C)  Identical to 40S ribosomal protein S9-2 (RPS9C) [Arabidopsis Thaliana] (GB:Q9FLF0); similar to 40S ribosomal protein S9 (RPS9B) [Arabidopsis thaliana] (TAIR:AT5G15200.1); similar to 40S ribosomal protein S9 [Catharanthus
MSGI1_15423	157973376	219.5	124.1	61.8	108	0	0	1.8	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S16 (RPS16A)  Identical to 40S ribosomal protein S16-3 (RPS16C) [Arabidopsis Thaliana] (GB:Q42340); Identical to 40S ribosomal protein S16-1 (RPS16A) [Arabidopsis Thaliana] (GB:Q9SK22); similar to 40S ribosomal protein S16 (RPS16C) [
MSGI1_11258	157973380	26.8	16.1	34.7	61	0	0	0	-1.9	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L18 (RPL18C)  Identical to 60S ribosomal protein L18-3 (RPL18C) [Arabidopsis Thaliana] (GB:Q940B0); similar to RPL18 (RIBOSOMAL PROTEIN L18), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G05590.1); similar to c"
MSGI1_11710	157973382	3.9	5.8	24.5	19.8	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_10893	157973386	34.8	30.2	215.4	64.2	0	-1.7	-2.6	-1.1	not assigned.unknown	not assigned.unknown
MSGI1_17046	157973399	43.2	11.7	54.9	39.9	-1.9	0	0	-1.8	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_17046	157973399	43.2	11.7	54.9	39.9	-1.9	0	0	-1.8	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_9825	157973413	58.4	30.8	16.4	29.8	0	0	1.8	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S8 (RPS8B)  Identical to 40S ribosomal protein S8-2 (RPS8B) [Arabidopsis Thaliana] (GB:Q9FIF3); similar to 40S ribosomal protein S8 (RPS8A) [Arabidopsis thaliana] (TAIR:AT5G20290.1); similar to ribosomal protein S8 [Oryza sativa (jap
MSGI1_15112	157973424	19.6	32.4	95.5	89.2	0	0	-2.3	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_8190	157973425	1	1.4	32.9	106.3	0	1.7	-5	-6.2	not assigned.unknown	not assigned.unknown
MSGI1_7006	157973427	6.6	5.5	31.2	14.5	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_15111	157973428	169.8	90.6	35.3	104.6	0	1.6	2.3	0	protein.synthesis.misc ribososomal protein	EMB2171 (EMBRYO DEFECTIVE 2171); structural constituent of ribosome  Identical to 60S ribosomal protein L23 (RPL23C) [Arabidopsis Thaliana] (GB:P49690;GB:Q8L8P0;GB:Q9SDB5); similar to 60S ribosomal protein L23 (RPL23A) [Arabidopsis thaliana] (TAIR:AT1G044
MSGI1_8360	157973431	55	28.5	32.1	77	0	1.3	0	-1.4	protein.synthesis.misc ribososomal protein	40S ribosomal protein S8 (RPS8B)  Identical to 40S ribosomal protein S8-2 (RPS8B) [Arabidopsis Thaliana] (GB:Q9FIF3); similar to 40S ribosomal protein S8 (RPS8A) [Arabidopsis thaliana] (TAIR:AT5G20290.1); similar to ribosomal protein S8 [Oryza sativa (jap
MSGI1_12804	157973433	39.1	21	11.8	24	0	0	1.7	0	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L21  Identical to 60S ribosomal protein L21-2 (RPL21F) [Arabidopsis Thaliana] (GB:Q9FDZ9); similar to 60S ribosomal protein L21 (RPL21E) [Arabidopsis thaliana] (TAIR:AT1G57660.1); similar to 60S ribosomal protein L21, putative, expr"
MSGI1_36494	157973438	7.5	5.8	34.5	19.2	0	0	-2.2	0	amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase	GAD (Glutamate decarboxylase 1); calmodulin binding Encodes one of two isoforms of glutamate decarboxylase. Identical to Glutamate decarboxylase 1 (EC 4.1.1.15) (GAD 1) (GAD1) [Arabidopsis Thaliana] (GB:Q42521;GB:Q9FFH9); similar to glutamate decarboxyla
MSGI1_13296	157973455	86.6	0.5	14.9	0.6	-7.4	-4.6	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_10331	157973457	29.6	15.3	8.4	17.7	0	0	1.8	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S8 (RPS8B)  Identical to 40S ribosomal protein S8-2 (RPS8B) [Arabidopsis Thaliana] (GB:Q9FIF3); similar to 40S ribosomal protein S8 (RPS8A) [Arabidopsis thaliana] (TAIR:AT5G20290.1); similar to ribosomal protein S8 [Oryza sativa (jap
MSGI1_21387	157973467	35.5	21	3.2	4.2	0	0	3.5	2.3	protein.synthesis.misc ribososomal protein	EMB2171 (EMBRYO DEFECTIVE 2171); structural constituent of ribosome  Identical to 60S ribosomal protein L23 (RPL23C) [Arabidopsis Thaliana] (GB:P49690;GB:Q8L8P0;GB:Q9SDB5); similar to 60S ribosomal protein L23 (RPL23A) [Arabidopsis thaliana] (TAIR:AT1G044
MSGI1_11313	157973471	74.5	16.3	22.5	33.7	-2.2	0	1.7	0	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_11028	157973473	184.9	46.6	91.7	120.7	-2	0	1	-1.4	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_12678	157973474	179.4	214.2	48.1	79.8	0	0	1.9	1.4	protein.aa activation	"UBQ11 (UBIQUITIN 11); protein binding polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14.  Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana"
MSGI1_11788	157973475	99.4	52.7	335.4	91.5	0	-1.9	-1.8	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CCR1	cinnamoyl-CoA reductase family  similar to cinnamoyl-CoA reductase family [Arabidopsis thaliana] (TAIR:AT2G02400.1); similar to NmrA-like family protein [Solanum demissum] (GB:AAT39306.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (Int
MSGI1_17310	157973483	16.1	4.3	33.5	10.9	0	-1.6	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_17310	157973483	16.1	4.3	33.5	10.9	0	-1.6	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_12846	157973486	68.5	29.9	21.9	24.9	-1.2	0	1.6	0	DNA.synthesis/chromatin structure.histone	"histone H2B, putative  Identical to Histone H2B.1 (HTB1) [Arabidopsis Thaliana] (GB:Q9LQQ4;GB:Q8L950); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold; (InterPro:"
MSGI1_9065	157973512	70.6	20	18.6	28.5	-1.8	0	1.9	0	PS.lightreaction.photosystem II.LHC-II	"CAB2 (Chlorophyll a/b-binding protein 2); chlorophyll binding Encodes lhcb1.1 a component of the LHCIIb light harvesting complex associated with photosystem II. Identical to Chlorophyll a-b binding protein 2, chloroplast precursor (LHCII type I CAB-2) (C"
MSGI1_7050	157973513	26.6	55.6	25.1	63.8	0	1.3	0	0	N-metabolism.ammonia metabolism.glutamine synthase	"ATGSR1 (Arabidopsis thaliana glutamine synthase clone R1); glutamate-ammonia ligase encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium Identical to Glutamine synthetase cytosolic isozyme 1-1 (EC 6.3.1.2) (GLN1;"
MSGI1_13641	157973523	40.6	21.7	13.1	27.7	0	0	1.6	0	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L21 (RPL21C)  Identical to 60S ribosomal protein L21-1 (RPL21C) [Arabidopsis Thaliana] (GB:Q43291); similar to 60S ribosomal protein L21 (RPL21A) [Arabidopsis thaliana] (TAIR:AT1G09590.1); similar to 60S ribosomal protein L21, putat"
MSGI1_18352	157973530	2.7	1.4	15.5	30	0	0	0	-4.4	protein.degradation.ubiquitin.proteasom	PAD2 (20S proteasome alpha subunit D2); peptidase Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation. Identical to Proteasome subunit alpha type 7-B (EC 3.4.25.1) (Proteasome subunit alpha type 4) (20S proteasome alpha subun
MSGI1_6927	157973540	70.5	42.4	83.6	10.6	0	-3	0	2	cell wall	"BXL1 (BETA-XYLOSIDASE 1); hydrolase, hydrolyzing O-glycosyl compounds encodes a beta-xylosidase located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase fa"
MSGI1_7103	157973544	0.5	0.6	13.9	0.7	0	-4.3	-4.8	0	cell wall	"ANAC019 (Arabidopsis NAC domain containing protein 19); transcription factor encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro. Identical to NAC domain-conta"
MSGI1_7103	157973544	0.5	0.6	13.9	0.7	0	-4.3	-4.8	0	RNA.regulation of transcription.NAC domain transcription factor family	"ANAC019 (Arabidopsis NAC domain containing protein 19); transcription factor encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro. Identical to NAC domain-conta"
MSGI1_7103	157973544	0.5	0.6	13.9	0.7	0	-4.3	-4.8	0	development.unspecified	"ANAC019 (Arabidopsis NAC domain containing protein 19); transcription factor encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro. Identical to NAC domain-conta"
MSGI1_7103	157973544	0.5	0.6	13.9	0.7	0	-4.3	-4.8	0	cell wall	"ANAC019 (Arabidopsis NAC domain containing protein 19); transcription factor encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro. Identical to NAC domain-conta"
MSGI1_10676	157973568	48.3	13.7	42.8	34.2	-1.8	0	0	0	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_15074	157973571	33.5	10.9	10.6	7.8	-1.6	0	1.7	0	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2AXb (HTA3) [Arabidopsis Thaliana] (GB:Q9S9K7); Identical to Probable histone H2AXa (HTA5) [Arabidopsis Thaliana] (GB:O04848;GB:Q8LAC0); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:A"
MSGI1_15288	157973580	15.3	4.8	1.4	0.2	0	0	3.5	0	cell wall	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_15288	157973580	15.3	4.8	1.4	0.2	0	0	3.5	0	lipid metabolism.lipid transfer proteins etc	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_15496	157973613	91	67.8	22.6	52.7	0	1.2	2	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S3 (RPS3A)  Identical to 40S ribosomal protein S3-1 (RPS3A) [Arabidopsis Thaliana] (GB:Q9SIP7); similar to 40S ribosomal protein S3 (RPS3B) [Arabidopsis thaliana] (TAIR:AT3G53870.1); similar to ribosomal protein S3 [Medicago truncat
MSGI1_10935	157973628	264.8	72.8	248.5	207	-1.9	0	0	-1.5	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_11585	157973634	24.2	53.2	232.2	137.7	1.1	0	-3.3	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_8512	157973643	74	38.1	26.9	34.6	0	0	1.5	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S8 (RPS8B)  Identical to 40S ribosomal protein S8-2 (RPS8B) [Arabidopsis Thaliana] (GB:Q9FIF3); similar to 40S ribosomal protein S8 (RPS8A) [Arabidopsis thaliana] (TAIR:AT5G20290.1); similar to ribosomal protein S8 [Oryza sativa (jap
MSGI1_7978	157973653	24.7	6.5	24.7	22.6	-1.9	0	0	0	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_12203	157973689	28.8	70.2	50.1	51.4	1.3	0	0	0	protein.degradation.ubiquitin.E2	UBC13 (ubiquitin-conjugating enzyme 13); ubiquitin-protein ligase  Identical to Ubiquitin-conjugating enzyme E2 13 (EC 6.3.2.19) (Ubiquitin-protein ligase 13) (Ubiquitin carrier protein 13) (UBC13) [Arabidopsis Thaliana] (GB:Q42541); similar to UBC14 (ub
MSGI1_7816	157973692	94	58.5	27.5	67.9	0	1.3	1.8	0	glycolysis.enolase	LOS2 (Low expression of osmotically responsive genes 1); phosphopyruvate hydratase Involved in light-dependent cold tolerance and encodes an enolase. Identical to Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase) (2-phospho-D- glycerate hydro-lyase)
MSGI1_7226	157973701	2.5	3.4	51.6	12.2	0	-2.1	-4.4	0	development.unspecified	SEN1 (DARK INDUCIBLE 1) Senescence-associated gene that is strongly induced by phosphate starvation.  Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway medi
MSGI1_7226	157973701	2.5	3.4	51.6	12.2	0	-2.1	-4.4	0	RNA.regulation of transcription.unclassified	SEN1 (DARK INDUCIBLE 1) Senescence-associated gene that is strongly induced by phosphate starvation.  Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway medi
MSGI1_16949	157973702	53.4	14.4	71.3	35.3	-1.9	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_16949	157973702	53.4	14.4	71.3	35.3	-1.9	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_10619	157973727	249.9	65	38.1	33.3	-1.9	0	2.7	0	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_6725	157973734	450.2	286.8	59.4	72.7	0	0	2.9	2	PS.lightreaction.photosystem II.PSII polypeptide subunits	PSBO-1 (OXYGEN-EVOLVING ENHANCER 33) Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In <i>Arabidopsis thaliana</i> the PsbO protein
MSGI1_16185	157973735	65.4	23.5	12.9	20.2	-1.5	0	2.3	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_8596	157973738	37.6	25.2	8	13.2	0	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_10934	157973759	8.8	30.7	20.5	22.9	1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_14001	157973763	1095	1556.8	423.1	1017	0	1.3	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_10556	157973764	332.1	82.2	217.3	251.5	-2	0	0	-1.6	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_8284	157973774	0.9	2.7	9.2	25.9	0	0	0	-3.3	not assigned.unknown	not assigned.unknown
MSGI1_13762	157973780	96.3	50	42.8	60.5	0	0	1.2	0	protein.synthesis.misc ribososomal protein	"40S ribosomal protein S15 (RPS15D)  Identical to 40S ribosomal protein S15-4 (RPS15D) [Arabidopsis Thaliana] (GB:Q9FY64); Identical to 40S ribosomal protein S15-1 (RPS15A) [Arabidopsis Thaliana] (GB:Q08112); similar to RPS15 (RIBOSOMAL PROTEIN S15), stru"
MSGI1_13535	157973787	88.3	16.5	22.8	23.1	-2.4	0	2	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_13535	157973787	88.3	16.5	22.8	23.1	-2.4	0	2	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_15606	157973790	30.6	0.2	3	0.1	-7.3	0	3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_15726	157973797	64.2	25.4	12.7	18.9	-1.3	0	2.3	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_18351	157973799	20	9.4	3.7	4.6	0	0	2.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L12 (RPL12C)  Identical to 60S ribosomal protein L12-3 (RPL12C) [Arabidopsis Thaliana] (GB:Q9FF52); similar to 60S ribosomal protein L12 (RPL12B) [Arabidopsis thaliana] (TAIR:AT3G53430.1); similar to 60S ribosomal protein L12 [Capsic
MSGI1_11194	157973827	45.6	36.1	41	130.8	0	1.7	0	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_10675	157973845	69.3	18	50.9	54.3	-1.9	0	0	-1.6	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_12802	157973849	42.5	100.5	46.5	121.4	1.2	1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_10415	157973853	7.1	5.3	15.5	24.9	0	0	0	-2.2	protein.synthesis.misc ribososomal protein	40S ribosomal protein S7 (RPS7A)  Identical to 40S ribosomal protein S7-1 (RPS7A) [Arabidopsis Thaliana] (GB:Q9C514); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.2); similar to 40S ribosomal protein S7-like protein [
MSGI1_8885	157973866	19.6	1.5	10.1	1.1	-3.7	0	0	0	cell wall	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT5G22810.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE90349.1); contains InterPro domain Lipolytic enzyme, G-D-S-L;"
MSGI1_8885	157973866	19.6	1.5	10.1	1.1	-3.7	0	0	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT5G22810.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE90349.1); contains InterPro domain Lipolytic enzyme, G-D-S-L;"
MSGI1_8885	157973866	19.6	1.5	10.1	1.1	-3.7	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_12945	157973871	28.3	5.7	34.3	19.6	-2.3	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_12945	157973871	28.3	5.7	34.3	19.6	-2.3	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_15040	157973877	19.3	12.3	1.7	2.9	0	0	3.5	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S16 (RPS16A)  Identical to 40S ribosomal protein S16-3 (RPS16C) [Arabidopsis Thaliana] (GB:Q42340); Identical to 40S ribosomal protein S16-1 (RPS16A) [Arabidopsis Thaliana] (GB:Q9SK22); similar to 40S ribosomal protein S16 (RPS16C) [
MSGI1_13724	157973883	62.1	17.3	49.3	49	-1.8	0	0	-1.5	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_13724	157973883	62.1	17.3	49.3	49	-1.8	0	0	-1.5	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_11380	157973894	11	35	3	7	1.7	0	0	2.3	not assigned.unknown	not assigned.unknown
MSGI1_9298	157973898	418.6	440.5	351.8	685.8	0	1	0	0	PS.calvin cyle.rubisco interacting	"RCA (RUBISCO ACTIVASE) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco. Identical to Ribulose bisphosphate carboxylase/ox"
MSGI1_16788	157973906	58.6	36.9	21.4	42.6	0	0	1.5	0	protein.targeting.nucleus	"NTF2A (NUCLEAR TRANSPORT FACTOR 2A); Ran GTPase binding / protein transporter Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transp"
MSGI1_14465	157973914	7.8	7.2	16.1	25.8	0	0	0	-1.8	transport.phosphate	"PHT2;1 (phosphate transporter 2;1) low affinity phosphate transporter Identical to Inorganic phosphate transporter 2-1, chloroplast precursor (H(+)/Pi cotransporter) (AtPht2;1) (PHT2-1) [Arabidopsis Thaliana] (GB:Q38954;GB:Q3EAZ6); similar to phosphate h"
MSGI1_10584	157973916	12.1	19.3	33.8	48.6	0	0	0	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_26126	157973920	17.9	23.8	18.7	60.4	0	1.7	0	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_14561	157973924	50.9	10.2	20.7	17.9	-2.3	0	1.3	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_14561	157973924	50.9	10.2	20.7	17.9	-2.3	0	1.3	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_9496	157973926	15.7	124.3	52.1	93.2	3	0	-1.7	0	development.unspecified	dormancy/auxin associated family protein  similar to dormancy/auxin associated protein-related [Arabidopsis thaliana] (TAIR:AT1G54070.1); similar to Dormancyauxin associated [Medicago truncatula] (GB:ABE80617.1); contains InterPro domain Dormancyauxin ass
MSGI1_12383	157973928	5.1	9.1	25.3	18	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_8570	157973934	168.5	164.1	424.3	281.2	0	0	-1.3	0	cell wall	PRXR1 (peroxidase 42); peroxidase Encodes AT4g21960 (AT4g21960/T8O5_170). Identical to Peroxidase 42 precursor (EC 1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b) (PER42) [Arabidopsis Thaliana] (GB:Q9SB81;GB:Q41937;GB:Q42579;GB:Q43730); similar to peroxida
MSGI1_8570	157973934	168.5	164.1	424.3	281.2	0	0	-1.3	0	misc.peroxidases	PRXR1 (peroxidase 42); peroxidase Encodes AT4g21960 (AT4g21960/T8O5_170). Identical to Peroxidase 42 precursor (EC 1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b) (PER42) [Arabidopsis Thaliana] (GB:Q9SB81;GB:Q41937;GB:Q42579;GB:Q43730); similar to peroxida
MSGI1_15566	157973939	15.6	33	85.2	193.1	0	1.2	-2.4	-2.5	not assigned.unknown	not assigned.unknown
MSGI1_11257	157973940	45.9	42	16.9	21	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_10642	157973959	55.2	13.1	37	40.2	-2.1	0	0	-1.6	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_7570	157973961	12.7	0.1	2.2	1.3	-7	0	0	0	secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase	"CHS (CHALCONE SYNTHASE); naringenin-chalcone synthase Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids.  Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of"
MSGI1_9883	157973963	73.7	18	49.9	40.5	-2	0	0	0	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_48484	157973975	35	31.6	207.7	373.4	0	0	-2.6	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_16548	157973985	52.8	31.6	20.4	34.4	0	0	1.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L10 (RPL10B)  Identical to 60S ribosomal protein L10-2 (Wilms tumor suppressor protein homolog) (RPL10B) [Arabidopsis Thaliana] (GB:Q08770;GB:Q42327;GB:Q9ZVG7); similar to 60S ribosomal protein L10 (RPL10A) / Wilm's tumor suppressor
MSGI1_14730	157974009	1.1	0.6	14.1	25	0	0	-3.7	-5.4	protein.synthesis.misc ribososomal protein	60S ribosomal protein L12 (RPL12C)  Identical to 60S ribosomal protein L12-3 (RPL12C) [Arabidopsis Thaliana] (GB:Q9FF52); similar to 60S ribosomal protein L12 (RPL12B) [Arabidopsis thaliana] (TAIR:AT3G53430.1); similar to 60S ribosomal protein L12 [Capsic
MSGI1_7449	157974032	115.4	119.9	41.5	107.5	0	1.4	1.5	0	PS.calvin cyle.rubisco interacting	"RCA (RUBISCO ACTIVASE) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco. Identical to Ribulose bisphosphate carboxylase/ox"
MSGI1_11897	157974044	9.4	13.4	40.4	38.7	0	0	-2.1	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_10674	157974050	142.2	34.1	82.8	80.1	-2.1	0	0	-1.2	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_11312	157974060	599.2	126.4	260.9	318.8	-2.2	0	1.2	-1.3	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_8452	157974074	346.4	213.4	75.7	147.4	0	1	2.2	0	protein.synthesis.elongation	elongation factor 1-alpha / EF-1-alpha  Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A) (A4) [Arabidopsis Thaliana] (GB:P13905); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar
MSGI1_14969	157974079	45.6	28.3	16.1	24.2	0	0	1.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L32 (RPL32A)  Identical to 60S ribosomal protein L32-1 (RPL32A) [Arabidopsis Thaliana] (GB:P49211;GB:Q8LC86;GB:Q9SVW1); similar to 60S ribosomal protein L32 (RPL32B) [Arabidopsis thaliana] (TAIR:AT5G46430.2); similar to ly200 protein
MSGI1_11497	157974103	30.2	19.4	2.6	8.2	0	0	3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_10507	157974109	3.7	6.1	72.7	4.9	0	-3.9	-4.3	0	not assigned.unknown	not assigned.unknown
MSGI1_34326	157974123	179.9	127.5	98.4	261.1	0	1.4	0	-1	RNA.RNA binding	"ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circa"
MSGI1_11524	157974133	265.4	206.6	108.2	217.1	0	1	1.3	0	stress.abiotic.heat	"HSP81-2 (EARLY-RESPONSIVE TO DEHYDRATION 8); ATP binding a member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl."
MSGI1_8650	157974135	174.6	90.4	30.6	56.9	0	0	2.5	0	signalling.calcium	CRT1 (CALRETICULIN 1); calcium ion binding Encodes calreticulin CRT1. Identical to Calreticulin-1 precursor (CRT1) [Arabidopsis Thaliana] (GB:O04151); similar to calreticulin 2 (CRT2) [Arabidopsis thaliana] (TAIR:AT1G09210.1); similar to calreticulin-1 [
MSGI1_11255	157974209	43.3	10.9	30.9	32.2	-2	0	0	-1.6	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_21527	157974233	15.2	6.9	1	0.6	0	0	3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_17862	157974240	23.3	5.9	23.6	14.5	-2	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_17862	157974240	23.3	5.9	23.6	14.5	-2	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_7502	157974255	61.3	133.8	72.6	94	1.1	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_7502	157974255	61.3	133.8	72.6	94	1.1	0	0	0	major CHO metabolism.degradation.sucrose.Susy	SUS1 (SUCROSE SYNTHASE 1); UDP-glycosyltransferase/ sucrose synthase Encodes a protein with sucrose synthase activity (SUS1). Identical to Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase) (SUS1) [Arabidopsis Thaliana] (GB:P49040); similar
MSGI1_13675	157974259	58.3	239.2	23.7	100.9	2	2.1	1.3	1.2	metal handling	"auxin/aluminum-responsive protein, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43830.1); similar to aluminum-induced [Brassica napus] (GB:BAA25999.1); contains domain ASPARAGINE SYNTHETASE (PTHR11772); contains domain no descrip"
MSGI1_13492	157974263	179	97.3	69.3	121.3	0	0	1.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L9 (RPL90A/C)  Identical to 60S ribosomal protein L9-1 (RPL9C) [Arabidopsis Thaliana] (GB:P49209;GB:Q9LDX2); similar to 60S ribosomal protein L9 (RPL90B) [Arabidopsis thaliana] (TAIR:AT1G33120.1); similar to unknown [Solanum tuberos
MSGI1_12347	157974277	358.9	489.1	116.1	177.9	0	0	1.6	1.5	RNA.processing.ribonucleases	RNase H domain-containing protein  similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G24090.1); similar to Os08g0177800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061125.1); similar to putative RNase H domain-containing
MSGI1_9513	157974278	38.9	73	53	108.5	0	1	0	0	OPP.non-reductive PP.transaldolase	"transaldolase, putative  similar to transaldolase [Solanum tuberosum] (GB:AAB54016.1); similar to transaldolase-like protein [Solanum tuberosum] (GB:ABB17002.1); similar to transaldolase [Lycopersicon esculentum] (GB:AAG16981.1); contains InterPro domain"
MSGI1_10816	157974285	127.2	32.9	54.7	76.3	-2	0	1.2	-1.2	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_15002	157974306	35.5	12.8	9.2	10.5	-1.5	0	1.9	0	DNA.synthesis/chromatin structure.histone	"histone H2B, putative  Identical to Histone H2B.1 (HTB1) [Arabidopsis Thaliana] (GB:Q9LQQ4;GB:Q8L950); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold; (InterPro:"
MSGI1_15803	157974309	62.9	17.9	24.4	43.7	-1.8	0	1.4	-1.3	PS.lightreaction.other electron carrier (ox/red).ferredoxin	"FED A (FERREDOXIN 2); electron carrier/ iron ion binding encodes a ferredoxin gene Identical to Ferredoxin-1, chloroplast precursor (PETF1) [Arabidopsis Thaliana] (GB:P16972); similar to ATFD1 (FERREDOXIN 1), electron carrier/ iron ion binding [Arabidops"
MSGI1_16293	157974314	26.1	8.3	0.3	0.1	0	0	6.4	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_16293	157974314	26.1	8.3	0.3	0.1	0	0	6.4	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_9098	157974319	49.7	62.9	33.3	64.4	0	1	0	0	development.unspecified	"senescence-associated protein, putative  similar to germination protein-related [Arabidopsis thaliana] (TAIR:AT3G29970.1); similar to HvB12D [Hordeum vulgare subsp. vulgare] (GB:CAA54065.1); contains InterPro domain B12D; (InterPro:IPR010530)"
MSGI1_12888	157974331	18.5	0.3	1.3	0	-5.9	0	3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_8884	157974333	73.1	37.3	28.2	15.2	0	0	1.4	0	cell wall	PIP2B (plasma membrane intrinsic protein 2;2); water channel a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascula
MSGI1_8884	157974333	73.1	37.3	28.2	15.2	0	0	1.4	0	transport.Major Intrinsic Proteins.PIP	PIP2B (plasma membrane intrinsic protein 2;2); water channel a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascula
MSGI1_8884	157974333	73.1	37.3	28.2	15.2	0	0	1.4	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_9644	157974339	40	181.4	56.8	199.6	2.2	1.8	0	0	metal handling	"auxin/aluminum-responsive protein, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43830.1); similar to aluminum-induced [Brassica napus] (GB:BAA25999.1); contains domain ASPARAGINE SYNTHETASE (PTHR11772); contains domain no descrip"
MSGI1_13761	157974342	269.6	354.4	121.8	142.9	0	0	1.1	1.3	RNA.processing.ribonucleases	RNase H domain-containing protein  similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G24090.1); similar to Os08g0177800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061125.1); similar to putative RNase H domain-containing
MSGI1_13107	157974345	33.5	265	85.1	183.1	3	1.1	-1.3	0	development.unspecified	dormancy/auxin associated family protein  similar to dormancy/auxin associated protein-related [Arabidopsis thaliana] (TAIR:AT1G54070.1); similar to Dormancyauxin associated [Medicago truncatula] (GB:ABE80617.1); contains InterPro domain Dormancyauxin ass
MSGI1_19415	157974354	8.7	4.1	32.7	6.4	0	-2.4	-1.9	0	hormone metabolism.auxin.induced-regulated-responsive-activated	"similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44500.1); similar to Plant protein family, putative [Medicago truncatula] (GB:ABE79402.1); similar to H+-transporting two-sector ATPase, delta (OSCP) subunit; Hypothetical plant protein [Medic"
MSGI1_13039	157974360	39.8	17.5	14.8	22.4	0	0	1.4	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"RPL15 (ribosomal protein L15) encodes a plastid ribosomal protein CL15, a constituent of the large subunit of the ribosomal complex Identical to 50S ribosomal protein L15, chloroplast precursor (CL15) (RPL15) [Arabidopsis Thaliana] (GB:P25873;GB:Q9LU99);"
MSGI1_13491	157974366	12.3	2.4	0.2	0.1	0	0	5.9	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_13491	157974366	12.3	2.4	0.2	0.1	0	0	5.9	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_9946	157974375	19.4	26.9	29.4	57.9	0	0	0	-1.1	not assigned.unknown	not assigned.unknown
MSGI1_19197	157974380	91	46.5	34.7	58	0	0	1.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L31 (RPL31C)  Identical to 60S ribosomal protein L31-3 (RPL31C) [Arabidopsis Thaliana] (GB:P51420;GB:Q8LEJ0;GB:Q9FJU1); similar to 60S ribosomal protein L31 (RPL31B) [Arabidopsis thaliana] (TAIR:AT4G26230.1); similar to 60S ribosomal
MSGI1_10865	157974383	179.7	45.1	81.9	121.2	-2	0	1.1	-1.4	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_12346	157974384	265.8	65.5	93.6	120.7	-2	0	1.5	0	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_7603	157974387	23.6	24.4	80	111.5	0	0	-1.8	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_18348	157974394	127.2	443.9	140.7	336.1	1.8	1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_14293	157974396	15.1	3.8	8.9	32.9	0	1.9	0	-3.1	cell wall	ATOSM34 (OSMOTIN 34) osmotin-like protein Identical to Osmotin-like protein OSM34 precursor (OSM34) [Arabidopsis Thaliana] (GB:P50700;GB:Q9T0D2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75050.1); similar to osmotin-like protein I [Gos
MSGI1_14293	157974396	15.1	3.8	8.9	32.9	0	1.9	0	-3.1	stress.abiotic	ATOSM34 (OSMOTIN 34) osmotin-like protein Identical to Osmotin-like protein OSM34 precursor (OSM34) [Arabidopsis Thaliana] (GB:P50700;GB:Q9T0D2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75050.1); similar to osmotin-like protein I [Gos
MSGI1_22012	157974398	15.1	64.4	10.9	19.2	2.1	0	0	1.7	not assigned.unknown	not assigned.unknown
MSGI1_18018	157974410	21.2	4.7	4.4	2.5	-2.2	0	2.3	0	cell wall	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_18018	157974410	21.2	4.7	4.4	2.5	-2.2	0	2.3	0	lipid metabolism.lipid transfer proteins etc	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_11077	157974433	130.2	53.6	75.5	107.4	-1.3	0	0	-1	stress.abiotic.unspecified	"SAH7 Encodes a protein, expressed in leaves, with similarity to pollen allergens. similar to pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] (TAIR:AT1G78040.2); similar to pollen-specific protein [Vitis pseudoreticulata] (GB:AB"
MSGI1_10892	157974447	109.3	35	44.6	65.1	-1.6	0	1.3	0	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_8511	157974461	112.9	76.4	40.1	70.5	0	0	1.5	0	protein.synthesis.elongation	"nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative  Identical to Nascent polypeptide-associated complex subunit alpha-like protein 1 (NAC-alpha-like protein 1) (Alpha-NAC-like protein 1) [Arabidopsis Thaliana] (GB:"
MSGI1_16496	157974462	101.9	85	21.1	21.4	0	0	2.3	2	PS.lightreaction.photosystem II.PSII polypeptide subunits	"PSBR (photosystem II subunit R) Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gen"
MSGI1_13490	157974468	40.2	21.8	10.6	25.6	0	0	1.9	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S26 (RPS26C)  Identical to 40S ribosomal protein S26-3 (RPS26C) [Arabidopsis Thaliana] (GB:Q9LYK9); similar to 40S ribosomal protein S26 (RPS26B) [Arabidopsis thaliana] (TAIR:AT2G40590.1); similar to ribosomal protein S26 [Pisum sat
MSGI1_14889	157974470	1.6	4.8	45.7	40.6	0	0	-4.8	-3.1	not assigned.unknown	not assigned.unknown
MSGI1_9062	157974476	44	21.1	13.5	22.9	0	0	1.7	0	stress.abiotic.heat	HSP70 (heat shock protein 70); ATP binding  similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G
MSGI1_8324	157974488	57.8	19.6	11.9	29.5	-1.6	0	2.3	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	"CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding Subunit of light-harvesting complex II (LHCII),which absorbs light and transfers energy to the photosynthetic reaction center. Identical to Chlorophyll a-b binding protein 2, chloroplast precu"
MSGI1_15377	157974498	68.2	56.2	14.3	32.8	0	0	2.3	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to lipid binding [Arabidopsis thaliana] (TAIR:AT5G55410.2); similar to MtN5 [Medicago truncatula] (GB:CAA75593.1); contains InterPro domain Plant lipid transfer/seed stor
MSGI1_9512	157974507	107.6	31.4	50.9	19.2	-1.8	-1.4	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_8304	157974508	178.5	88.7	52.1	91.8	-1	0	1.8	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L10 (RPL10B)  Identical to 60S ribosomal protein L10-2 (Wilms tumor suppressor protein homolog) (RPL10B) [Arabidopsis Thaliana] (GB:Q08770;GB:Q42327;GB:Q9ZVG7); similar to 60S ribosomal protein L10 (RPL10A) / Wilm's tumor suppressor
MSGI1_7864	157974510	45.5	1.4	7.4	0.3	-5	0	2.6	0	cell wall.modification	"ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thalian"
MSGI1_7997	157974512	45.4	33	171.1	22.8	0	-2.9	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_10236	157974531	7.5	9.4	26.6	34.5	0	0	0	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_10673	157974532	21.4	14	0.4	1.3	0	0	5.7	3.4	protein.synthesis.misc ribososomal protein	40S ribosomal protein S14 (RPS14B)  Identical to 40S ribosomal protein S14-2 (RPS14B) [Arabidopsis Thaliana] (GB:Q9CAX6); Identical to 40S ribosomal protein S14-1 (RPS14A) [Arabidopsis Thaliana] (GB:Q9SIH0); similar to 40S ribosomal protein S14 (RPS14A) [
MSGI1_13416	157974534	138.9	105.7	70.2	116.6	0	0	1	0	redox.peroxiredoxin	"TPX1 (THIOREDOXIN-DEPENDENT PEROXIDASE 1); antioxidant thioredoxin-dependent peroxidase similar to TPX2 (THIOREDOXIN-DEPENDENT PEROXIDASE 2), antioxidant [Arabidopsis thaliana] (TAIR:AT1G65970.1); similar to type 2 peroxiredoxin [Brassica rapa subsp. pek"
MSGI1_16181	157974541	29.2	5.5	22.2	10.8	-2.4	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_16181	157974541	29.2	5.5	22.2	10.8	-2.4	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_15542	157974543	67.6	35.3	20.5	44.3	0	0	1.7	0	protein.synthesis.misc ribososomal protein	P40 (40S ribosomal protein SA); structural constituent of ribosome acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue. Identical to 40S rib
MSGI1_12559	157974559	385.1	342.2	172.7	305.2	0	0	1.2	0	stress.abiotic.heat	"HSP81-2 (EARLY-RESPONSIVE TO DEHYDRATION 8); ATP binding a member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl."
MSGI1_14888	157974566	34.3	8.9	31.7	19.3	-1.9	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_14888	157974566	34.3	8.9	31.7	19.3	-1.9	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_8763	157974569	182.8	47	96.2	115.8	-2	0	0	-1.3	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_11945	157974579	14.5	27.4	122.7	81.7	0	0	-3.1	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_15874	157974581	32.8	6.9	33.9	23.2	-2.2	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_15874	157974581	32.8	6.9	33.9	23.2	-2.2	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_12110	157974599	0.1	0	12.4	18.7	0	0	-7	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_7316	157974611	26.3	16.5	5.4	8.5	0	0	2.3	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L6 (RPL6A)  Identical to 60S ribosomal protein L6-1 (RPL6A) [Arabidopsis Thaliana] (GB:Q9FZ76); similar to 60S ribosomal protein L6 (RPL6C) [Arabidopsis thaliana] (TAIR:AT1G74050.1); similar to 60S ribosomal protein L6 (YL16-like) (
MSGI1_8807	157974617	15.7	8.1	1.1	1	0	0	3.8	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S10 (RPS10C)  Identical to 40S ribosomal protein S10-3 (RPS10C) [Arabidopsis Thaliana] (GB:Q9LTF2;GB:Q8VZ66); similar to 40S ribosomal protein S10 (RPS10A) [Arabidopsis thaliana] (TAIR:AT4G25740.1); similar to 40S ribosomal protein
MSGI1_17648	157974630	34.9	11.2	20.3	11	-1.6	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_17648	157974630	34.9	11.2	20.3	11	-1.6	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_10487	157974660	33.8	7.7	21	25.8	-2.1	0	0	0	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_12911	157974662	80.3	36.5	41.4	63.2	-1.1	0	1	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S12 (RPS12C)  Identical to 40S ribosomal protein S12-2 (RPS12C) [Arabidopsis Thaliana] (GB:Q9SKZ3); similar to 40S ribosomal protein S12 (RPS12A) [Arabidopsis thaliana] (TAIR:AT1G15930.1); similar to Ribosomal protein L7Ae/L30e/S12e/
MSGI1_13038	157974669	64.1	29.5	27.3	31.7	-1.1	0	1.2	0	protein.synthesis.misc ribososomal protein	"STV1 (SHORT VALVE1); structural constituent of ribosome RPL24B encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B. Mutants showed defects in"
MSGI1_10272	157974680	21.2	0.2	4.5	0.5	-6.7	0	2.2	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	ELP (EXTENSIN-LIKE PROTEIN); lipid binding extensin-like protein (ELP) similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G62510.1); similar to extensin-like protein [Brassica napus] (GB:
MSGI1_15142	157974683	19.9	11.5	4	6.8	0	0	2.3	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L12 (RPL12C)  Identical to 60S ribosomal protein L12-3 (RPL12C) [Arabidopsis Thaliana] (GB:Q9FF52); similar to 60S ribosomal protein L12 (RPL12B) [Arabidopsis thaliana] (TAIR:AT3G53430.1); similar to 60S ribosomal protein L12 [Capsic
MSGI1_16547	157974693	116.8	61.3	11.9	22.3	0	0	3.3	1.5	protein.synthesis.misc ribososomal protein	60S acidic ribosomal protein P3 (RPP3B)  Identical to 60S acidic ribosomal protein P3-2 (RPP3B) [Arabidopsis Thaliana] (GB:Q9LVC9); similar to 60S acidic ribosomal protein P3 (RPP3A) [Arabidopsis thaliana] (TAIR:AT4G25890.1); similar to Os06g0701400 [Oryz
MSGI1_16741	157974696	32	8.2	37.6	25.4	-2	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_16741	157974696	32	8.2	37.6	25.4	-2	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_10327	157974697	164.7	101.1	56.7	84.5	0	0	1.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L18A (RPL18aB)  Identical to 60S ribosomal protein L18a-2 (RPL18AB) [Arabidopsis Thaliana] (GB:P51418;GB:O64699); similar to 60S ribosomal protein L18A (RPL18aC) [Arabidopsis thaliana] (TAIR:AT3G14600.1); similar to unknown [Solanum
MSGI1_17396	157974699	19.3	26.4	59.4	85.4	0	0	-1.6	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_14220	157974700	100.1	45.7	33	36.4	-1.1	0	1.6	0	DNA.synthesis/chromatin structure.histone	histone H2B  Identical to Histone H2B.11 (HTB4) [Arabidopsis Thaliana] (GB:P40283;GB:Q5PP00;GB:Q8LDE5;GB:Q9FJE5); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold;
MSGI1_10505	157974704	21.6	4.5	27	29.4	-2.3	0	0	-2.7	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_12079	157974707	372	94.1	185.1	203.7	-2	0	1	-1.1	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_17096	157974718	2.1	4.8	52.8	33.4	0	0	-4.7	-2.8	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_17096	157974718	2.1	4.8	52.8	33.4	0	0	-4.7	-2.8	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_13069	157974721	91.2	49.1	35.9	56.8	0	0	1.3	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S9 (RPS9C)  Identical to 40S ribosomal protein S9-2 (RPS9C) [Arabidopsis Thaliana] (GB:Q9FLF0); similar to 40S ribosomal protein S9 (RPS9B) [Arabidopsis thaliana] (TAIR:AT5G15200.1); similar to 40S ribosomal protein S9 [Catharanthus
MSGI1_11139	157974729	86.6	61.4	28.3	68.6	0	1.3	1.6	0	"misc.beta 1,3 glucan hydrolases"	glycosyl hydrolase family protein 17  similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT5G08000.1); similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT5G61130.1); similar to putative glycosyl hydrol
MSGI1_11139	157974729	86.6	61.4	28.3	68.6	0	1.3	1.6	0	cell wall	glycosyl hydrolase family protein 17  similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT5G08000.1); similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT5G61130.1); similar to putative glycosyl hydrol
MSGI1_9551	157974731	3.4	2.1	20.8	28.8	0	0	-2.6	-3.8	protein.synthesis.misc ribososomal protein	40S ribosomal protein S7 (RPS7A)  Identical to 40S ribosomal protein S7-1 (RPS7A) [Arabidopsis Thaliana] (GB:Q9C514); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.2); similar to 40S ribosomal protein S7-like protein [
MSGI1_10641	157974744	410.7	100.3	244	361.2	-2	0	0	-1.8	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_16583	157974753	41.3	10.3	30.6	31.1	-2	0	0	-1.6	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_16583	157974753	41.3	10.3	30.6	31.1	-2	0	0	-1.6	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_10555	157974764	52.8	14.8	81.3	75	-1.8	0	0	-2.3	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_15541	157974769	129.7	30.4	74	83.2	-2.1	0	0	-1.5	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_12910	157974796	23.1	3.7	19.8	15.6	-2.6	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_12910	157974796	23.1	3.7	19.8	15.6	-2.6	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_11679	157974826	14.1	15	24.1	39.4	0	0	0	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_8976	157974832	22.2	35.6	52.3	38.4	0	0	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_12199	157974839	16.1	16.5	34.6	7.6	0	-2.2	0	0	signalling.calcium	"calcium-binding protein, putative  similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G73630.1); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE81417.1); contains InterPro domain EF-Hand type; (InterPro:IPR01199"
MSGI1_7004	157974843	19.9	24.2	63.1	105	0	0	-1.7	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_10152	157974851	83.5	22.5	38.1	42.8	-1.9	0	1.1	0	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_17395	157974861	13.7	3.2	0	0	0	0	4.8	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_17395	157974861	13.7	3.2	0	0	0	0	4.8	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_15913	157974879	26	6.5	12.5	14	-2	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_15913	157974879	26	6.5	12.5	14	-2	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_15419	157974880	27.8	7	13.5	7.5	-2	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_15419	157974880	27.8	7	13.5	7.5	-2	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_11868	157974888	43.6	72.5	227.4	191.8	0	0	-2.4	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_8471	157974896	345.9	160.6	176.5	309.7	-1.1	0	1	0	PS.calvin cyle.GAP	GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase Encodes one of the two subunits forming the photosynthetic glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and as such a constituent of the supramolecula
MSGI1_13451	157974899	10.6	0.1	0	0	-6.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_7767	157974903	5.5	5.1	27.6	3.8	0	-2.9	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_7225	157974907	42.3	23.5	16.2	20.1	0	0	1.4	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	"ELI3-2 (ELICITOR-ACTIVATED GENE 3) Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria.  Though similar to mannitol dehydrogenases, this enzyme does not have"
MSGI1_7675	157974911	19	53.7	37.7	30.4	1.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_8097	157974922	45.8	211.7	63.8	150.4	2.2	1.2	0	0	metal handling	"auxin/aluminum-responsive protein, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43830.1); similar to aluminum-induced [Brassica napus] (GB:BAA25999.1); contains domain ASPARAGINE SYNTHETASE (PTHR11772); contains domain no descrip"
MSGI1_16947	157974940	30.1	7.8	47.6	21.6	-1.9	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_16947	157974940	30.1	7.8	47.6	21.6	-1.9	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_7923	157974960	37.4	79.6	66.5	61.4	1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_7169	157974970	30.1	20.2	36.4	49.3	0	0	0	-1.3	cell.cycle.peptidylprolyl isomerase	ROC7 (rotamase CyP 7); peptidyl-prolyl cis-trans isomerase Encodes cyclophilin ROC7. Identical to Peptidyl-prolyl cis-trans isomerase CYP20-1 precursor (EC 5.2.1.8) (PPIase CYP20-1) (Rotamase cyclophilin-7) (Cyclophilin of 20 kDa 1) (CYP20-1) [Arabidopsi
MSGI1_10838	157974976	13.8	22.2	76.2	55.6	0	0	-2.5	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_11759	157974977	61.4	88.5	90.9	248.9	0	1.5	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_7281	157974984	32.8	17.3	9.7	11.4	0	0	1.8	0	DNA.synthesis/chromatin structure	high-mobility-group protein / HMG-I/Y protein Encodes a protein belonging to the subgroup of HMGA (high mobility group A) proteins that interact with A/T-rich stretches of DNA. similar to histone H1/H5 family protein [Arabidopsis thaliana] (TAIR:AT1G4862
MSGI1_12198	157974993	62.6	30.9	19.2	23.9	-1	0	1.7	0	protein.synthesis.misc ribososomal protein	"EMB1080 (EMBRYO DEFECTIVE 1080); structural constituent of ribosome  Identical to 40S ribosomal protein S11-1 (RPS11A) [Arabidopsis Thaliana] (GB:P16181); similar to RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA), structural constituent of ribosome [Arabidopsis"
MSGI1_6977	157974995	69.7	28.1	23.6	42	-1.3	0	1.6	0	cell wall	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G61820.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japoni
MSGI1_6977	157974995	69.7	28.1	23.6	42	-1.3	0	1.6	0	protein.degradation.aspartate protease	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G61820.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japoni
MSGI1_10385	157975004	12.4	104.9	41.3	71	3.1	0	-1.7	0	development.unspecified	dormancy/auxin associated family protein  similar to dormancy/auxin associated protein-related [Arabidopsis thaliana] (TAIR:AT1G54070.1); similar to Dormancyauxin associated [Medicago truncatula] (GB:ABE80617.1); contains InterPro domain Dormancyauxin ass
MSGI1_8422	157975035	30.7	15.5	5	11.1	0	0	2.6	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S8 (RPS8B)  Identical to 40S ribosomal protein S8-2 (RPS8B) [Arabidopsis Thaliana] (GB:Q9FIF3); similar to 40S ribosomal protein S8 (RPS8A) [Arabidopsis thaliana] (TAIR:AT5G20290.1); similar to ribosomal protein S8 [Oryza sativa (jap
MSGI1_10815	157975039	56.1	8.3	17.1	12.5	-2.8	0	1.7	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_10815	157975039	56.1	8.3	17.1	12.5	-2.8	0	1.7	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_14692	157975040	0.7	0.6	60.3	61.9	0	0	-6.4	-6.7	not assigned.unknown	not assigned.unknown
MSGI1_11808	157975056	56.5	78.3	90.7	250.1	0	1.5	0	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_10025	157975059	20.8	16.6	0.2	0	0	0	6.7	5.1	cell wall.cell wall proteins	extensin family protein  similar to 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G12430.1); similar to Extensin-like re (GB:ABD65126.1); contains InterPro domain 3&apos; (InterPro:IPR002562); contains InterPro domain Polynucleo
MSGI1_10151	157975069	68.3	15.6	20.8	14.6	-2.1	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_11559	157975085	14.9	20.1	41.7	67.5	0	0	-1.5	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_12973	157975101	14.8	0.1	0.9	0	-7.2	0	4	0	not assigned.unknown	not assigned.unknown
MSGI1_12775	157975102	15.1	3.3	0.1	0	0	0	7.2	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_12775	157975102	15.1	3.3	0.1	0	0	0	7.2	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_11706	157975110	172.2	72.8	49.6	68	-1.2	0	1.8	0	cell.organisation	TUB1 (tubulin beta-1 chain); structural molecule beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses Identical to Tubulin beta-1 chain (B
MSGI1_9470	157975121	145.9	39.7	149.5	203.1	-1.9	0	0	-2.4	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_8073	157975130	95.9	63.6	81.2	185	0	1.2	0	-1.5	PS.calvin cyle.aldolase	"fructose-bisphosphate aldolase, putative  similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT4G38970.1); similar to plastidic aldolase NPALDP1 [Nicotiana paniculata] (GB:BAA77604.1); similar to latex plastidic aldolase-lik"
MSGI1_11618	157975136	7.4	12.5	69.4	27.3	0	-1.3	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_9779	157975151	60.9	14.2	36	52.9	-2.1	0	0	-1.9	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_11649	157975154	46.2	72.8	253.7	216	0	0	-2.5	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_18733	157975170	57.4	18.4	45.9	19.6	-1.6	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_18733	157975170	57.4	18.4	45.9	19.6	-1.6	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_12774	157975185	14	0.1	0.3	0	-7.1	0	5.5	0	not assigned.unknown	not assigned.unknown
MSGI1_11339	157975189	149.8	37.5	109.1	148	-2	0	0	-2	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_16677	157975191	25.1	5.1	15.9	14.6	-2.3	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_16677	157975191	25.1	5.1	15.9	14.6	-2.3	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_13450	157975195	19	10.2	1.9	3.7	0	0	3.3	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L12 (RPL12C)  Identical to 60S ribosomal protein L12-3 (RPL12C) [Arabidopsis Thaliana] (GB:Q9FF52); similar to 60S ribosomal protein L12 (RPL12B) [Arabidopsis thaliana] (TAIR:AT3G53430.1); similar to 60S ribosomal protein L12 [Capsic
MSGI1_7994	157975201	1.5	0.6	26.7	22.5	0	0	-4.2	-5.2	redox.peroxiredoxin	"peroxiredoxin type 2, putative  similar to TPX1 (THIOREDOXIN-DEPENDENT PEROXIDASE 1), antioxidant [Arabidopsis thaliana] (TAIR:AT1G65980.1); similar to Os06g0625500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058113.1); similar to peroxiredoxin [H"
MSGI1_14072	157975202	52.7	18.3	31	17.5	-1.5	0	0	0	cell wall.cell wall proteins.RGP	"RGP2 (Reversibly glycosylated polypeptide-3); DNA binding / alpha-1,4-glucan-protein synthase (UDP-forming) Reversibly Glycosylated Polypeptide-2 similar to RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1) [Arabidopsis thaliana] (TAIR:AT3G02230.1); similar t"
MSGI1_21046	157975211	1.2	1	18.5	23.4	0	0	-3.9	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_12078	157975213	13.2	23.4	49.6	57	0	0	-1.9	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_14557	157975221	172.2	94.5	70	111.9	0	0	1.3	0	protein.degradation.ubiquitin	UBQ6 (ubiquitin 6); protein binding polyubiquitin gene Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical to 40S ribosomal protein S27a-2 (UBQ6) [Arabidopsis Thaliana]
MSGI1_16440	157975235	23.3	5.7	19.8	14.4	-2	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_16440	157975235	23.3	5.7	19.8	14.4	-2	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_13723	157975257	90.4	27.3	466	37.4	-1.7	-3.6	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_8118	157975263	60	73.3	197.5	313.4	0	0	-1.7	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_10583	157975282	0.6	0.5	72.5	0.3	0	-7.9	-6.9	0	amino acid metabolism.synthesis.branched chain group.common	"ATBCAT-2; branched-chain-amino-acid transaminase/ catalytic Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. Identical to Branched-chain-amino-acid aminotransferase 2, chloroplast"
MSGI1_6406	157975293	39.6	61.3	85.6	144.6	0	0	-1.1	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_9257	157975299	77.6	16.3	25.9	21.5	-2.3	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_14292	157975300	13.8	3.4	10.1	44.4	0	2.1	0	-3.7	cell wall	ATOSM34 (OSMOTIN 34) osmotin-like protein Identical to Osmotin-like protein OSM34 precursor (OSM34) [Arabidopsis Thaliana] (GB:P50700;GB:Q9T0D2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75050.1); similar to osmotin-like protein I [Gos
MSGI1_14292	157975300	13.8	3.4	10.1	44.4	0	2.1	0	-3.7	stress.abiotic	ATOSM34 (OSMOTIN 34) osmotin-like protein Identical to Osmotin-like protein OSM34 precursor (OSM34) [Arabidopsis Thaliana] (GB:P50700;GB:Q9T0D2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75050.1); similar to osmotin-like protein I [Gos
MSGI1_13759	157975313	50	27.5	20.4	34	0	0	1.3	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S14 (RPS14B)  Identical to 40S ribosomal protein S14-2 (RPS14B) [Arabidopsis Thaliana] (GB:Q9CAX6); Identical to 40S ribosomal protein S14-1 (RPS14A) [Arabidopsis Thaliana] (GB:Q9SIH0); similar to 40S ribosomal protein S14 (RPS14A) [
MSGI1_10582	157975322	17.3	21.2	66.5	40.9	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_7027	157975328	186.7	98.8	82.5	103	0	0	1.2	0	stress.abiotic.heat	HSP70 (heat shock protein 70); ATP binding  similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G
MSGI1_14034	157975338	43.3	9.7	7.4	4.7	-2.2	0	2.5	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_62439	157975352	18.5	21.2	2	4.8	0	0	3.2	2.1	not assigned.unknown	not assigned.unknown
MSGI1_16049	157975357	14.5	3.3	32.2	8.9	0	-1.9	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_16049	157975357	14.5	3.3	32.2	8.9	0	-1.9	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_10210	157975368	50.8	42.1	21.2	41	0	0	1.3	0	TCA / org. transformation.TCA.2-oxoglutarate dehydrogenase	"2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative  similar to 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglu"
MSGI1_7003	157975372	43.4	59.4	0.6	0.4	0	0	6.2	7.2	not assigned.unknown	not assigned.unknown
MSGI1_10581	157975375	94	67.6	42.1	74.2	0	0	1.2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L17 (RPL17B)  Identical to 60S ribosomal protein L17-2 (RPL17B) [Arabidopsis Thaliana] (GB:P51413;GB:O64803); similar to 60S ribosomal protein L17 (RPL17A) [Arabidopsis thaliana] (TAIR:AT1G27400.1); similar to ribosomal protein [Pet
MSGI1_7315	157975381	68.4	87.3	213.9	340.4	0	0	-1.6	-2	not assigned.unknown	not assigned.unknown
MSGI1_12944	157975384	9.2	14.2	38.5	39.2	0	0	-2.1	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_11582	157975395	21.8	27.1	33.3	63.4	0	0	0	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_19073	157975408	117.6	108.3	52.7	150.7	0	1.5	1.2	0	RNA.regulation of transcription.C2H2 zinc finger family	zinc finger (C2H2 type) family protein  similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT3G02790.1); similar to hypothetical protein MtrDRAFT_AC148171g28v1 [Medicago truncatula] (GB:ABE89815.1)
MSGI1_7385	157975419	27.9	18.3	6.6	16.2	0	0	2.1	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S3 (RPS3C)  Identical to 40S ribosomal protein S3-3 (RPS3C) [Arabidopsis Thaliana] (GB:Q9FJA6); similar to 40S ribosomal protein S3 (RPS3A) [Arabidopsis thaliana] (TAIR:AT2G31610.1); similar to ribosomal protein S3 [Medicago truncat
MSGI1_13998	157975427	18.8	35.5	7.7	10.8	0	0	0	1.7	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	PAL1 (PHE AMMONIA LYASE 1); phenylalanine ammonia-lyase encodes a protein similar to phenylalanine ammonia-lyase Identical to Phenylalanine ammonia-lyase 1 (EC 4.3.1.5) (PAL1) [Arabidopsis Thaliana] (GB:P35510;GB:Q94AN1;GB:Q9ZQD6); similar to PAL2 (pheny
MSGI1_15001	157975429	46.8	12.8	32.5	27.3	-1.9	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_15001	157975429	46.8	12.8	32.5	27.3	-1.9	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_27114	157975430	152.1	54.8	47.3	89.2	-1.5	0	1.7	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L39 (RPL39C)  Identical to 60S ribosomal protein L39-1 (RPL39C) [Arabidopsis Thaliana] (GB:P51424;GB:Q541X1;GB:Q93VI7;GB:Q9SIS1); similar to 60S ribosomal protein L39 (RPL39B) [Arabidopsis thaliana] (TAIR:AT3G02190.1); similar to put
MSGI1_10024	157975433	29.3	46.1	20.9	16.3	0	0	0	1.5	RNA.regulation of transcription.unclassified	zinc finger (AN1-like) family protein  Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 4 (AtSAP4) (SAP4) [Arabidopsis Thaliana] (GB:Q9SJM6;GB:Q0IGN9); similar to zinc finger (AN1-like) family protein [Arabidopsis thaliana
MSGI1_7314	157975439	56.8	23.5	29.6	19.7	-1.3	0	0	0	stress.abiotic.unspecified	"SAH7 Encodes a protein, expressed in leaves, with similarity to pollen allergens. similar to pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] (TAIR:AT1G78040.2); similar to pollen-specific protein [Vitis pseudoreticulata] (GB:AB"
MSGI1_7401	157975442	4.5	4.5	105.7	4.2	0	-4.7	-4.6	0	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	ATHVA22E (Arabidopsis thaliana HVA22 homologue E) Encodes one of five HVA22 homologs in Arabidopsis.  HVA22 is an ABA- and stress-inducible gene first isolated from barley.  Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is
MSGI1_7583	157975445	75.2	81.1	168.3	104.2	0	0	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_14691	157975458	30.8	6.1	27.7	18.2	-2.3	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_14691	157975458	30.8	6.1	27.7	18.2	-2.3	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_16544	157975475	0.3	1.2	16.8	17.1	0	0	-5.8	-3.8	not assigned.unknown	not assigned.unknown
MSGI1_9494	157975477	71.8	25	14.8	22.2	-1.5	0	2.3	0	cell.organisation	"ACT11 (ACTIN-11); structural constituent of cytoskeleton Encodes an actin that is expressed predominantly during reproductive development. Identical to Actin-11 (ACT11) [Arabidopsis Thaliana] (GB:P53496); similar to ACT3 (ACTIN 3), structural constituent"
MSGI1_10534	157975505	83.4	23.1	152.6	128.3	-1.9	0	0	-2.5	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_11495	157975506	65.8	39.5	28.4	40	0	0	1.2	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S10 (RPS10C)  Identical to 40S ribosomal protein S10-3 (RPS10C) [Arabidopsis Thaliana] (GB:Q9LTF2;GB:Q8VZ66); similar to 40S ribosomal protein S10 (RPS10A) [Arabidopsis thaliana] (TAIR:AT4G25740.1); similar to 40S ribosomal protein
MSGI1_7384	157975524	890.9	612.3	412.3	1021.3	0	1.3	1.1	0	PS.lightreaction.photosystem II.LHC-II	"CAB2 (Chlorophyll a/b-binding protein 2); chlorophyll binding Encodes lhcb1.1 a component of the LHCIIb light harvesting complex associated with photosystem II. Identical to Chlorophyll a-b binding protein 2, chloroplast precursor (LHCII type I CAB-2) (C"
MSGI1_14966	157975527	32.3	99.3	65.5	28.7	1.6	-1.2	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_6172	157975533	38.5	0.2	5.8	0.5	-7.6	0	2.7	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_6172	157975533	38.5	0.2	5.8	0.5	-7.6	0	2.7	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to ATLTL1/LTL1 (LI-TOLERANT LIPASE 1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT3G04290.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipo"
MSGI1_9778	157975534	36.7	9.7	18.6	11.6	-1.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_12842	157975535	72.9	18.3	54.5	44.8	-2	0	0	-1.3	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)  Identical to Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) (RBCS-3B) [Arabidopsis Thaliana]"
MSGI1_11944	157975546	43.5	33.6	49.4	87.4	0	0	0	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_13860	157975560	54.3	12.4	37.6	35.3	-2.1	0	0	-1.5	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_13860	157975560	54.3	12.4	37.6	35.3	-2.1	0	0	-1.5	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_12887	157975565	31.8	8.5	31.3	24.1	-1.9	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_12887	157975565	31.8	8.5	31.3	24.1	-1.9	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_11048	157975567	153.5	122.7	150	265.3	0	0	0	-1.1	PS.lightreaction.photosystem II.PSII polypeptide subunits	PSBY (photosystem II BY) PsbY precursor (psbY) mRNA. This single nuclear gene is imported into the chloroplasts where it is processed into two integral membrane proteins with identical topology (PsbY-1 and PsbY-2). The protein appears to bind manganese b
MSGI1_10814	157975573	12.4	17.6	40.5	42.1	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_25076	157975604	65.4	205.6	113.2	69	1.7	0	0	1.6	hormone metabolism.ethylene.signal transduction	ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5); DNA binding / transcription factor/ transcriptional activator encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-5). The protein contains
MSGI1_25076	157975604	65.4	205.6	113.2	69	1.7	0	0	1.6	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5); DNA binding / transcription factor/ transcriptional activator encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-5). The protein contains
MSGI1_10188	157975611	96.3	52.2	48.2	40.3	0	0	1	0	PS.lightreaction.photosystem II.LHC-II	"LHCB6 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding Lhcb6 protein (Lhcb6), light harvesting complex of photosystem II. similar to LHCA6 (Photosystem I light harvesting complex gene 6), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G19150.1);"
MSGI1_9447	157975613	30.6	15.5	8.2	15	0	0	1.9	0	DNA.synthesis/chromatin structure	high-mobility-group protein / HMG-I/Y protein Encodes a protein belonging to the subgroup of HMGA (high mobility group A) proteins that interact with A/T-rich stretches of DNA. similar to histone H1/H5 family protein [Arabidopsis thaliana] (TAIR:AT1G4862
MSGI1_37221	157975617	164.3	132.5	91	317.7	0	1.8	0	-1.3	RNA.RNA binding	"ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circa"
MSGI1_11991	157975618	11.4	16.6	29.5	44.5	0	0	0	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_11522	157975626	13.7	33.7	11.2	31.8	0	1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_11440	157975638	66.5	36.6	28.8	45.5	0	0	1.2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L12 (RPL12C)  Identical to 60S ribosomal protein L12-3 (RPL12C) [Arabidopsis Thaliana] (GB:Q9FF52); similar to 60S ribosomal protein L12 (RPL12B) [Arabidopsis thaliana] (TAIR:AT3G53430.1); similar to 60S ribosomal protein L12 [Capsic
MSGI1_17446	157975649	30.1	6.3	44	20.8	-2.3	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_17446	157975649	30.1	6.3	44	20.8	-2.3	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_12141	157975666	97.6	20.3	67.3	78.5	-2.3	0	0	-2	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_10149	157975669	52.1	20.7	24.7	24.3	-1.3	0	0	0	stress.abiotic.unspecified	"SAH7 Encodes a protein, expressed in leaves, with similarity to pollen allergens. similar to pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] (TAIR:AT1G78040.2); similar to pollen-specific protein [Vitis pseudoreticulata] (GB:AB"
MSGI1_14854	157975685	37	8.4	33.5	19.4	-2.1	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_14854	157975685	37	8.4	33.5	19.4	-2.1	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_13896	157975695	95.1	35.2	24.2	37.6	-1.4	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_16391	157975698	21.6	5.1	23.2	10.1	-2.1	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_16391	157975698	21.6	5.1	23.2	10.1	-2.1	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_14604	157975701	23.8	4.6	16	11.5	-2.4	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_14604	157975701	23.8	4.6	16	11.5	-2.4	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_12591	157975723	98.2	51.3	38.1	56.4	0	0	1.4	0	stress.abiotic.heat	BIP (LUMINAL BINDING PROTEIN); ATP binding luminal binding protein (BiP) Identical to Luminal-binding protein 2 precursor (BiP2) (AtBP2) [Arabidopsis Thaliana] (GB:Q39043;GB:Q39042); Identical to Luminal-binding protein 1 precursor (BiP1) (AtBP1) [Arabido
MSGI1_7248	157975724	347.2	228.3	117.3	200.7	0	0	1.6	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_7248	157975724	347.2	228.3	117.3	200.7	0	0	1.6	0	cell wall	"GAMMA-TIP (Tonoplast intrinsic protein (TIP) gamma); water channel encodes a tonoplast intrinsic protein, which functions as water channel. highly expressed in root, stem, cauline leaves and flowers. Identical to Aquaporin TIP1.1 (Tonoplast intrinsic pro"
MSGI1_7248	157975724	347.2	228.3	117.3	200.7	0	0	1.6	0	transport.Major Intrinsic Proteins.TIP	"GAMMA-TIP (Tonoplast intrinsic protein (TIP) gamma); water channel encodes a tonoplast intrinsic protein, which functions as water channel. highly expressed in root, stem, cauline leaves and flowers. Identical to Aquaporin TIP1.1 (Tonoplast intrinsic pro"
MSGI1_11521	157975742	52.6	10.2	41.2	36.9	-2.4	0	0	-1.9	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_7121	157975753	38.7	15.3	33.5	42.6	0	0	0	-1.5	stress.abiotic.unspecified	"SAH7 Encodes a protein, expressed in leaves, with similarity to pollen allergens. similar to pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] (TAIR:AT1G78040.2); similar to pollen-specific protein [Vitis pseudoreticulata] (GB:AB"
MSGI1_12197	157975798	5.1	7.1	23.3	14.6	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_12590	157975800	491	268.8	192.4	192.5	0	0	1.4	0	cell.organisation	"TUB6 (BETA-6 TUBULIN) Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment. Identical to Tubulin beta-6 chain (Beta-6 tubulin) (TUBB6) [Arabidopsis Thaliana] (GB:P29514); similar to TUB3 (Tubulin beta-3), st"
MSGI1_12590	157975800	491	268.8	192.4	192.5	0	0	1.4	0	cell wall	"TUB6 (BETA-6 TUBULIN) Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment. Identical to Tubulin beta-6 chain (Beta-6 tubulin) (TUBB6) [Arabidopsis Thaliana] (GB:P29514); similar to TUB3 (Tubulin beta-3), st"
MSGI1_7063	157975809	2.3	2.6	17.4	2.7	0	-2.7	-2.9	0	hormone metabolism.ethylene.signal transduction	ATERF-9/ATERF9/ERF9 (ERF domain protein 9); DNA binding / transcription factor/ transcriptional repressor encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2
MSGI1_7063	157975809	2.3	2.6	17.4	2.7	0	-2.7	-2.9	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	ATERF-9/ATERF9/ERF9 (ERF domain protein 9); DNA binding / transcription factor/ transcriptional repressor encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2
MSGI1_19328	157975818	138	34.9	190	108	-2	0	0	-1.6	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_10932	157975830	74.1	31.9	16.4	17.5	-1.2	0	2.2	0	cell wall.cell wall proteins.AGPs	FLA10 (fasciclin-like arabinogalactan-protein 10)  Identical to Fasciclin-like arabinogalactan protein 10 precursor (FLA10) [Arabidopsis Thaliana] (GB:Q9LZX4;GB:Q94JM1); similar to FLA8 (Arabinogalactan protein 8) [Arabidopsis thaliana] (TAIR:AT2G45470.1)
MSGI1_6365	157975837	0.1	0	10.1	17.3	0	0	0	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_11943	157975838	45.2	20.9	12	13.4	0	0	1.9	0	TCA / org. transformation.TCA.malate DH	"malate dehydrogenase (NAD), mitochondrial, putative  Identical to Malate dehydrogenase 2, mitochondrial precursor (EC 1.1.1.37) (mNAD- MDH 2) [Arabidopsis Thaliana] (GB:Q9LKA3); similar to malate dehydrogenase (NAD), mitochondrial [Arabidopsis thaliana]"
MSGI1_8223	157975843	4.2	3.4	20.1	30.5	0	0	0	-3.2	protein.synthesis.misc ribososomal protein	40S ribosomal protein S7 (RPS7A)  Identical to 40S ribosomal protein S7-1 (RPS7A) [Arabidopsis Thaliana] (GB:Q9C514); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.2); similar to 40S ribosomal protein S7-like protein [
MSGI1_10504	157975846	106.5	27.6	147.7	221.4	-1.9	0	0	-3	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_16945	157975851	71.1	30.7	7.3	13.9	-1.2	0	3.3	0	protein.synthesis.misc ribososomal protein	60S acidic ribosomal protein P2 (RPP2B)  Identical to 60S acidic ribosomal protein P2-2 (RPP2B) [Arabidopsis Thaliana] (GB:Q9SLF7;GB:Q8LB03); similar to 60S acidic ribosomal protein P2 (RPP2A) [Arabidopsis thaliana] (TAIR:AT2G27720.1); similar to 60s acid
MSGI1_10701	157975866	2	2.1	23.7	19	0	0	-3.6	-3.2	not assigned.unknown	not assigned.unknown
MSGI1_7136	157975884	68.2	53.5	39.6	81.6	0	1	0	0	redox.thioredoxin	"ATPDIL1-1 (PDI-LIKE 1-1); protein disulfide isomerase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9 Iden"
MSGI1_7136	157975884	68.2	53.5	39.6	81.6	0	1	0	0	cell wall	"ATPDIL1-1 (PDI-LIKE 1-1); protein disulfide isomerase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9 Iden"
MSGI1_10296	157975893	5.4	4.5	24.6	39.8	0	0	-2.2	-3.1	protein.synthesis.misc ribososomal protein	40S ribosomal protein S7 (RPS7A)  Identical to 40S ribosomal protein S7-1 (RPS7A) [Arabidopsis Thaliana] (GB:Q9C514); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.2); similar to 40S ribosomal protein S7-like protein [
MSGI1_7945	157975900	16.4	7.5	19.4	29.8	0	0	0	-2	protein.synthesis.misc ribososomal protein	40S ribosomal protein S7 (RPS7A)  Identical to 40S ribosomal protein S7-1 (RPS7A) [Arabidopsis Thaliana] (GB:Q9C514); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.2); similar to 40S ribosomal protein S7-like protein [
MSGI1_9427	157975915	86.9	51.3	22.2	33.8	0	0	2	0	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L18 (RPL18C)  Identical to 60S ribosomal protein L18-3 (RPL18C) [Arabidopsis Thaliana] (GB:Q940B0); similar to RPL18 (RIBOSOMAL PROTEIN L18), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G05590.1); similar to c"
MSGI1_12739	157975925	3.6	5.2	28.3	13.8	0	0	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_8357	157975928	8	6.2	15.8	23.6	0	0	0	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_10813	157975930	12	18.7	76.5	44.9	0	0	-2.7	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_10383	157975957	41.2	23.2	15.5	17.6	0	0	1.4	0	DNA.synthesis/chromatin structure.histone	histone H2B  Identical to Histone H2B.11 (HTB4) [Arabidopsis Thaliana] (GB:P40283;GB:Q5PP00;GB:Q8LDE5;GB:Q9FJE5); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold;
MSGI1_15685	157976006	148.6	79.2	55	88.3	0	0	1.4	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S26 (RPS26C)  Identical to 40S ribosomal protein S26-3 (RPS26C) [Arabidopsis Thaliana] (GB:Q9LYK9); similar to 40S ribosomal protein S26 (RPS26B) [Arabidopsis thaliana] (TAIR:AT2G40590.1); similar to ribosomal protein S26 [Pisum sat
MSGI1_11731	157976007	102.4	139.7	42.6	28.1	0	0	1.3	2.3	signalling.calcium	"calmodulin, putative  similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT2G41410.1); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE94192.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro doma"
MSGI1_12379	157976020	75.7	42.3	33	67.4	0	1	1.2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L12 (RPL12C)  Identical to 60S ribosomal protein L12-3 (RPL12C) [Arabidopsis Thaliana] (GB:Q9FF52); similar to 60S ribosomal protein L12 (RPL12B) [Arabidopsis thaliana] (TAIR:AT3G53430.1); similar to 60S ribosomal protein L12 [Capsic
MSGI1_10023	157976021	32	258.4	130.3	232.5	3	0	-2	0	development.unspecified	dormancy/auxin associated family protein  similar to dormancy/auxin associated protein-related [Arabidopsis thaliana] (TAIR:AT1G54070.1); similar to Dormancyauxin associated [Medicago truncatula] (GB:ABE80617.1); contains InterPro domain Dormancyauxin ass
MSGI1_16291	157976026	25.6	13.6	3.5	9.4	0	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_25567	157976029	121.2	147.4	74.6	166.3	0	1.2	0	0	RNA.transcription	"DNA-directed RNA polymerase II, putative  similar to DNA-directed RNA polymerase II, putative [Arabidopsis thaliana] (TAIR:AT2G04630.1); similar to Os07g0463100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059582.1); similar to Os03g0586600 [Oryza"
MSGI1_9386	157976037	54.8	43.2	1.9	5.6	0	0	4.9	2.9	protein.synthesis.misc ribososomal protein	40S ribosomal protein S7 (RPS7A)  Identical to 40S ribosomal protein S7-1 (RPS7A) [Arabidopsis Thaliana] (GB:Q9C514); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.2); similar to 40S ribosomal protein S7-like protein [
MSGI1_13488	157976042	7.7	12.1	31.3	7.4	0	-2.1	-2	0	cell wall.modification	"XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4); hydrolase, acting on glycosyl bonds xyloglucan endotransglycosylase-related protein (XTR4) Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 30 precursor (EC 2.4.1.207) (At-XTH30) (XTH-30) ("
MSGI1_114838	157976044	41.4	40.2	11	51.3	0	2.2	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_16348	157976050	12.2	6.9	12.9	36.5	0	1.5	0	-2.4	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L27A (RPL27aC)  Identical to 60S ribosomal protein L27a-3 (RPL27AC) [Arabidopsis Thaliana] (GB:P49637;GB:Q8LE80); similar to RPL27A (RIBOSOMAL PROTEIN L27A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G23290."
MSGI1_16132	157976051	22.3	5.9	3.4	2.7	0	0	2.7	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_16132	157976051	22.3	5.9	3.4	2.7	0	0	2.7	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_10729	157976060	144.5	69.2	144.7	95.8	-1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_8510	157976061	51.1	26.6	20.2	41.2	0	0	1.3	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L15 (RPL15A)  Identical to 60S ribosomal protein L15-2 (RPL15B) [Arabidopsis Thaliana] (GB:Q8VYF1;GB:O23582); Identical to 60S ribosomal protein L15-1 (RPL15A) [Arabidopsis Thaliana] (GB:O23515); similar to 60S ribosomal protein L15
MSGI1_15871	157976097	63.5	13	15.1	20.9	-2.3	0	2.1	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_15871	157976097	63.5	13	15.1	20.9	-2.3	0	2.1	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_10553	157976101	167.1	37.6	144	129.8	-2.2	0	0	-1.8	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_11000	157976111	7	11.5	28.4	34	0	0	-2	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_18671	157976145	79.6	118.7	279	793.4	0	1.5	-1.8	-2.7	not assigned.unknown	not assigned.unknown
MSGI1_7615	157976154	133.6	1.2	33.7	0.4	-6.8	-6.4	2	0	cell wall.modification	"ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thalian"
MSGI1_11989	157976157	2315.4	2573.7	1170.9	2387.3	0	1	1	0	not assigned.unknown	not assigned.unknown
MSGI1_8016	157976158	34.4	8.3	23.1	33	-2.1	0	0	-2	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_12108	157976171	41.6	14	15.7	20.4	-1.6	0	1.4	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	"CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding Subunit of light-harvesting complex II (LHCII),which absorbs light and transfers energy to the photosynthetic reaction center. Identical to Chlorophyll a-b binding protein 2, chloroplast precu"
MSGI1_15071	157976180	69.4	25.1	23.3	45.5	-1.5	0	1.6	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L27 (RPL27C)  Identical to 60S ribosomal protein L27-3 (RPL27C) [Arabidopsis Thaliana] (GB:P51419;GB:O23354); similar to 60S ribosomal protein L27 (RPL27B) [Arabidopsis thaliana] (TAIR:AT3G22230.1); similar to Ribosomal protein L27e;
MSGI1_17094	157976182	38.8	7.9	28.9	26.5	-2.3	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_17094	157976182	38.8	7.9	28.9	26.5	-2.3	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_11439	157976195	16.8	8.5	2.4	2.5	0	0	2.8	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S10 (RPS10C)  Identical to 40S ribosomal protein S10-3 (RPS10C) [Arabidopsis Thaliana] (GB:Q9LTF2;GB:Q8VZ66); similar to 40S ribosomal protein S10 (RPS10A) [Arabidopsis thaliana] (TAIR:AT4G25740.1); similar to 40S ribosomal protein
MSGI1_12022	157976200	18.4	24.6	87.1	54.5	0	0	-2.2	-1.1	not assigned.unknown	not assigned.unknown
MSGI1_7152	157976207	54.5	18.7	5.5	11.1	-1.5	0	3.3	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	"CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding Subunit of light-harvesting complex II (LHCII),which absorbs light and transfers energy to the photosynthetic reaction center. Identical to Chlorophyll a-b binding protein 2, chloroplast precu"
MSGI1_13345	157976210	52.4	36.5	20	45.8	0	1.2	1.4	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S14 (RPS14B)  Identical to 40S ribosomal protein S14-2 (RPS14B) [Arabidopsis Thaliana] (GB:Q9CAX6); Identical to 40S ribosomal protein S14-1 (RPS14A) [Arabidopsis Thaliana] (GB:Q9SIH0); similar to 40S ribosomal protein S14 (RPS14A) [
MSGI1_8990	157976216	24.4	0.1	7.4	1.2	-7.9	0	0	0	cell wall	GLP3 (GERMIN-LIKE PROTEIN 3); manganese ion binding / metal ion binding / nutrient reservoir Encodes a germin-like protein. Identical to Germin-like protein subfamily 3 member 3 precursor (AtGER3) (AtGLP2) (GER3) [Arabidopsis Thaliana] (GB:P94072;GB:P940
MSGI1_8990	157976216	24.4	0.1	7.4	1.2	-7.9	0	0	0	stress.abiotic.unspecified	GLP3 (GERMIN-LIKE PROTEIN 3); manganese ion binding / metal ion binding / nutrient reservoir Encodes a germin-like protein. Identical to Germin-like protein subfamily 3 member 3 precursor (AtGER3) (AtGLP2) (GER3) [Arabidopsis Thaliana] (GB:P94072;GB:P940
MSGI1_14389	157976227	83.6	46	27.4	50.9	0	0	1.6	0	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L21 (RPL21C)  Identical to 60S ribosomal protein L21-1 (RPL21C) [Arabidopsis Thaliana] (GB:Q43291); similar to 60S ribosomal protein L21 (RPL21A) [Arabidopsis thaliana] (TAIR:AT1G09590.1); similar to 60S ribosomal protein L21, putat"
MSGI1_12268	157976236	15.4	24.8	40.8	62.3	0	0	-1.4	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_16045	157976270	31.6	5.9	17.4	18.3	-2.4	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_16045	157976270	31.6	5.9	17.4	18.3	-2.4	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_7280	157976271	24.5	77.1	23	138	1.7	2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_14726	157976280	48.2	32.1	24.1	52.4	0	1.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_13722	157976282	24.2	0	2.1	0	-5.6	0	3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_11307	157976303	24.3	46.3	56.7	41.8	0	0	-1.2	0	protein.degradation.ubiquitin	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein  similar to Os04g0476800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053083.1); similar to Os02g0593700 [Oryza sativa (japonica
MSGI1_16542	157976307	75.4	19.2	71.9	50.3	-2	0	0	-1.4	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_16542	157976307	75.4	19.2	71.9	50.3	-2	0	0	-1.4	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_16091	157976319	85.7	58.6	33.5	68.5	0	1	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_17394	157976342	35.8	8.7	40.3	29.2	-2	0	0	-1.7	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_17394	157976342	35.8	8.7	40.3	29.2	-2	0	0	-1.7	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_10862	157976360	125	72.8	48.2	89.2	0	0	1.4	0	glycolysis.glyceraldehyde 3-phosphate dehydrogenase	GAPC (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced
MSGI1_14154	157976361	74.3	16.8	45.8	25.4	-2.1	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_14154	157976361	74.3	16.8	45.8	25.4	-2.1	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_14555	157976381	28.2	243.8	93.6	110.2	3.1	0	-1.7	1.1	development.unspecified	dormancy/auxin associated family protein  similar to dormancy/auxin associated protein-related [Arabidopsis thaliana] (TAIR:AT1G54070.1); similar to Dormancyauxin associated [Medicago truncatula] (GB:ABE80617.1); contains InterPro domain Dormancyauxin ass
MSGI1_7024	157976405	24.1	19.4	32.8	73.7	0	1.2	0	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_19137	157976408	67.1	66.7	28	44.7	0	0	1.3	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.3 (HTR8) [Arabidopsis Thaliana] (GB:P59169;GB:Q6NR95); similar to histone H3.2 [Arabidopsis thaliana] (TAIR:AT4G40030.3); similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G40040.2); similar to disease-resistent-re
MSGI1_12885	157976410	0	0	12.3	14.7	0	0	-4.6	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_12267	157976432	13.7	18.8	33.9	62.6	0	0	0	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_16736	157976442	12.1	3.9	0.1	0.1	0	0	6.9	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_16736	157976442	12.1	3.9	0.1	0.1	0	0	6.9	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_10580	157976450	92.1	24.4	125.9	95.6	-1.9	0	0	-2	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_15799	157976458	7.3	16.4	50.4	49.3	0	0	-2.8	-1.6	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_15799	157976458	7.3	16.4	50.4	49.3	0	0	-2.8	-1.6	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_12531	157976468	111.4	65.1	28.3	46.9	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_9159	157976491	8.6	15.8	31.7	21.8	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_15070	157976501	86	46.6	28.5	59	0	1	1.6	0	protein.synthesis.misc ribososomal protein	EMB2171 (EMBRYO DEFECTIVE 2171); structural constituent of ribosome  Identical to 60S ribosomal protein L23 (RPL23C) [Arabidopsis Thaliana] (GB:P49690;GB:Q8L8P0;GB:Q9SDB5); similar to 60S ribosomal protein L23 (RPL23A) [Arabidopsis thaliana] (TAIR:AT1G044
MSGI1_13592	157976504	4.1	4.2	12.6	22	0	0	0	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_12378	157976525	28.8	38	99.8	85	0	0	-1.8	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_10382	157976528	18.5	22.3	29.5	60	0	1	0	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_41691	157976533	9.8	15.6	49.1	26	0	0	-2.3	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	"CAD4 (CINNAMYL ALCOHOL DEHYDROGENASE 4); cinnamyl-alcohol dehydrogenase Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use caffeyl, coniferyl and  d-hydroxyconiferyl alde"
MSGI1_8336	157976535	53.9	22	16.4	18	-1.3	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_8141	157976546	70.3	72.5	65.8	159.6	0	1.3	0	-1.1	major CHO metabolism.synthesis.starch.starch synthase	"starch synthase, putative  Identical to Probable granule-bound starch synthase 1, chloroplast precursor (EC 2.4.1.242) (Granule-bound starch synthase I) (GBSS-I) (WAXY) [Arabidopsis Thaliana] (GB:Q9MAQ0); similar to glycogen synthase, putative [Arabidops"
MSGI1_7582	157976549	62.6	16.2	20.2	18.3	-2	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_7246	157976561	37.2	42.4	120.4	178.1	0	0	-1.7	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_10269	157976581	4.9	2.4	7.8	16.1	0	0	0	-2.7	protein.synthesis.misc ribososomal protein	"40S ribosomal protein S15 (RPS15D)  Identical to 40S ribosomal protein S15-4 (RPS15D) [Arabidopsis Thaliana] (GB:Q9FY64); Identical to 40S ribosomal protein S15-1 (RPS15A) [Arabidopsis Thaliana] (GB:Q08112); similar to RPS15 (RIBOSOMAL PROTEIN S15), stru"
MSGI1_10532	157976592	9.3	13.3	40.5	34.1	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_8907	157976618	34.7	8.5	12.6	13.2	-2	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_10381	157976626	26.9	30	30.9	103.7	0	1.7	0	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_31908	157976630	11.6	13.1	0.4	0.2	0	0	4.9	6	not assigned.unknown	not assigned.unknown
MSGI1_29730	157976647	77.3	103.9	240	116.9	0	0	-1.6	0	protein.aa activation	"UBQ11 (UBIQUITIN 11); protein binding polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14.  Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana"
MSGI1_9096	157976650	192.7	87.7	117	197.9	-1.1	0	0	-1.2	PS.calvin cyle.GAP	"GAPA-2; glyceraldehyde-3-phosphate dehydrogenase  similar to GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT), glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G26650.1); similar to glyceraldehyde-3-phosphate dehydrogenas"
MSGI1_13137	157976664	23	13	5.2	8.7	0	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_7862	157976667	140.1	32.3	42.6	41.2	-2.1	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_15107	157976675	30.2	6.6	26.5	21.5	-2.2	0	0	0	lipid metabolism.lipid transfer proteins etc	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_15107	157976675	30.2	6.6	26.5	21.5	-2.2	0	0	0	cell wall	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_10121	157976684	7.5	6.2	14.1	34.2	0	0	0	-2.5	protein.synthesis.misc ribososomal protein	40S ribosomal protein S7 (RPS7A)  Identical to 40S ribosomal protein S7-1 (RPS7A) [Arabidopsis Thaliana] (GB:Q9C514); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.2); similar to 40S ribosomal protein S7-like protein [
MSGI1_13210	157976693	38.1	20.2	4.3	13.2	0	0	3.1	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L12 (RPL12C)  Identical to 60S ribosomal protein L12-3 (RPL12C) [Arabidopsis Thaliana] (GB:Q9FF52); similar to 60S ribosomal protein L12 (RPL12B) [Arabidopsis thaliana] (TAIR:AT3G53430.1); similar to 60S ribosomal protein L12 [Capsic
MSGI1_11677	157976707	39.4	54.6	114.4	155.4	0	0	-1.5	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_10638	157976711	562.7	115.3	218.8	254	-2.3	0	1.4	-1.1	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_7614	157976712	64	75.3	207.3	303.2	0	0	-1.7	-2	not assigned.unknown	not assigned.unknown
MSGI1_10616	157976723	17.1	24.7	63	63.8	0	0	-1.9	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_16289	157976728	22.9	5.1	29.5	19.7	-2.2	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_16289	157976728	22.9	5.1	29.5	19.7	-2.2	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_10637	157976733	62.8	12.7	27.3	34	-2.3	0	1.2	0	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_12377	157976750	12.6	15.1	16.7	53.4	0	1.7	0	-1.8	transport.Major Intrinsic Proteins.TIP	TIP4;1 (tonoplast intrinsic protein 4;1); water channel  Identical to Aquaporin TIP4.1 (Tonoplast intrinsic protein 4.1) (Epsilon-tonoplast intrinsic protein) (Epsilon-TIP) (TIP4.1) [Arabidopsis Thaliana] (GB:O82316;GB:Q53XD1); similar to GAMMA-TIP (Tono
MSGI1_12377	157976750	12.6	15.1	16.7	53.4	0	1.7	0	-1.8	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_12377	157976750	12.6	15.1	16.7	53.4	0	1.7	0	-1.8	cell wall	TIP4;1 (tonoplast intrinsic protein 4;1); water channel  Identical to Aquaporin TIP4.1 (Tonoplast intrinsic protein 4.1) (Epsilon-tonoplast intrinsic protein) (Epsilon-TIP) (TIP4.1) [Arabidopsis Thaliana] (GB:O82316;GB:Q53XD1); similar to GAMMA-TIP (Tono
MSGI1_13929	157976752	18.1	2.7	20.3	9.7	-2.7	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_13929	157976752	18.1	2.7	20.3	9.7	-2.7	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_15137	157976756	6.4	19.2	68.3	74.7	0	0	-3.4	-2	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_15137	157976756	6.4	19.2	68.3	74.7	0	0	-3.4	-2	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_15754	157976764	21.4	49.4	79.8	134.6	1.2	0	-1.9	-1.4	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_15754	157976764	21.4	49.4	79.8	134.6	1.2	0	-1.9	-1.4	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_8302	157976766	56.9	73.6	30.3	35.4	0	0	0	1.1	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.3 (HTR8) [Arabidopsis Thaliana] (GB:P59169;GB:Q6NR95); similar to histone H3.2 [Arabidopsis thaliana] (TAIR:AT4G40030.3); similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G40040.2); similar to disease-resistent-re
MSGI1_11520	157976782	1124.2	254.3	148.4	176.6	-2.1	0	2.9	0	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_18797	157976784	19.3	45.6	37.4	23.5	1.2	0	0	0	RNA.regulation of transcription.unclassified	zinc finger (AN1-like) family protein  Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 3 (AtSAP3) (SAP3) [Arabidopsis Thaliana] (GB:Q9ZNU9); similar to zinc finger (AN1-like) family protein [Arabidopsis thaliana] (TAIR:AT
MSGI1_17597	157976786	185.8	734.4	354.1	596	2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_6900	157976790	12.3	0.4	4.3	0.8	-4.9	0	0	0	misc.cytochrome P450	"CYP86A2 (ABERRANT INDUCTION OF TYPE THREE GENES 1); oxygen binding Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems. Identical to Cytochrome P450 86A2 (EC 1.14.-.-) (CYP86"
MSGI1_12162	157976799	46	29.8	1041.4	152.8	0	-2.8	-4.5	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_30880	157976823	117.8	183.5	559.4	707.8	0	0	-2.2	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_10356	157976826	394.6	98.2	230.3	360.6	-2	0	0	-1.9	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_23293	157976839	295.3	385.1	333.8	833.2	0	1.3	0	-1.1	not assigned.unknown	not assigned.unknown
MSGI1_13412	157976851	23.4	26	101.4	30.8	0	-1.7	-2.1	0	minor CHO metabolism.galactose.alpha-galactosidases	"alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative  similar to ATAGAL2 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 2), alpha-galactosidase [Arabidopsis thaliana] (TAIR:AT5G08370.2); similar to glycosyl hydr"
MSGI1_13412	157976851	23.4	26	101.4	30.8	0	-1.7	-2.1	0	cell wall	"alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative  similar to ATAGAL2 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 2), alpha-galactosidase [Arabidopsis thaliana] (TAIR:AT5G08370.2); similar to glycosyl hydr"
MSGI1_7485	157976852	70.7	39.1	55.3	122.9	0	1.2	0	-1.7	protein.synthesis.misc ribososomal protein	40S ribosomal protein S8 (RPS8B)  Identical to 40S ribosomal protein S8-2 (RPS8B) [Arabidopsis Thaliana] (GB:Q9FIF3); similar to 40S ribosomal protein S8 (RPS8A) [Arabidopsis thaliana] (TAIR:AT5G20290.1); similar to ribosomal protein S8 [Oryza sativa (jap
MSGI1_8784	157976854	15.7	18.9	33.8	53.4	0	0	0	-1.5	RNA.regulation of transcription.SNF7	SNF7 family protein  similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT1G73030.1); similar to putative developmental protein [Nicotiana benthamiana] (GB:AAO59435.1); contains InterPro domain Snf7; (InterPro:IPR005024)
MSGI1_7749	157976860	15.7	9.6	82.3	10.2	0	-3	-2.4	0	redox.ascorbate and glutathione.glutathione	"ATGPX6 (GLUTATHIONE PEROXIDASE 6); glutathione peroxidase Encodes glutathione peroxidase. Identical to Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial precursor (EC 1.11.1.12) (PHGPx) (AtGPX1) (GPX6) [Arabidopsis Thaliana] (GB"
MSGI1_12161	157976864	149.3	85.7	38.9	86.1	0	1.1	1.9	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S19 (RPS19A)  Identical to 40S ribosomal protein S19-1 (RPS19A) [Arabidopsis Thaliana] (GB:Q9SGA6); similar to 40S ribosomal protein S19 (RPS19B) [Arabidopsis thaliana] (TAIR:AT5G15520.1); similar to Ribosomal protein S19e [Medicago
MSGI1_10891	157976866	23.3	6.3	17.3	42.4	0	1.3	0	-2.8	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_11438	157976868	71	41	30.7	34.2	0	0	1.2	0	RNA.regulation of transcription.General Transcription	"nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative  similar to nascent polypeptide-associated complex (NAC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G73230.1); similar to tr"
MSGI1_13529	157976872	24.3	99.1	24	76.9	2	1.7	0	0	metal handling	"auxin/aluminum-responsive protein, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43830.1); similar to aluminum-induced [Brassica napus] (GB:BAA25999.1); contains domain ASPARAGINE SYNTHETASE (PTHR11772); contains domain no descrip"
MSGI1_8840	157976875	6.1	2.5	44.3	4.6	0	-3.3	-2.9	0	redox.ascorbate and glutathione.glutathione	"ATGPX6 (GLUTATHIONE PEROXIDASE 6); glutathione peroxidase Encodes glutathione peroxidase. Identical to Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial precursor (EC 1.11.1.12) (PHGPx) (AtGPX1) (GPX6) [Arabidopsis Thaliana] (GB"
MSGI1_12107	157976884	13	6.8	10.9	28.9	0	0	0	-2.1	protein.synthesis.misc ribososomal protein	60S ribosomal protein L12 (RPL12C)  Identical to 60S ribosomal protein L12-3 (RPL12C) [Arabidopsis Thaliana] (GB:Q9FF52); similar to 60S ribosomal protein L12 (RPL12B) [Arabidopsis thaliana] (TAIR:AT3G53430.1); similar to 60S ribosomal protein L12 [Capsic
MSGI1_10614	157976888	263.1	68.7	199.9	171.5	-1.9	0	0	-1.3	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_14069	157976900	33.1	23.4	11.8	24.1	0	0	1.5	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S17 (RPS17A)  Identical to 40S ribosomal protein S17-1 (RPS17A) [Arabidopsis Thaliana] (GB:P49205;GB:Q9SJD0); similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT5G04800.4); similar to 40S ribosomal protein S
MSGI1_15752	157976911	85.6	20.1	13.1	15.3	-2.1	0	2.7	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_11135	157976920	122	59.6	133.2	79.7	-1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_14686	157976924	47.2	13.7	6.8	5.6	-1.8	0	2.8	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_14686	157976924	47.2	13.7	6.8	5.6	-1.8	0	2.8	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_15536	157976928	23.1	5.7	26.7	13	-2	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_15536	157976928	23.1	5.7	26.7	13	-2	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_13343	157976947	13.7	0	0.3	0	-4.8	0	5.5	0	not assigned.unknown	not assigned.unknown
MSGI1_9294	157976948	2.9	2.4	13.8	28.9	0	0	0	-3.6	protein.synthesis.misc ribososomal protein	40S ribosomal protein S7 (RPS7A)  Identical to 40S ribosomal protein S7-1 (RPS7A) [Arabidopsis Thaliana] (GB:Q9C514); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.2); similar to 40S ribosomal protein S7-like protein [
MSGI1_12619	157976958	5	8.8	28.2	21.2	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_16175	157976960	3.8	4.6	35.1	3.9	0	-3.2	-3.2	0	stress.abiotic.unspecified	SAG21 (SENESCENCE-ASSOCIATED GENE 21) Encodes AtLEA5 (late embryogenesis abundant like protein).  Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21).  Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses. sim
MSGI1_16175	157976960	3.8	4.6	35.1	3.9	0	-3.2	-3.2	0	development.late embryogenesis abundant	SAG21 (SENESCENCE-ASSOCIATED GENE 21) Encodes AtLEA5 (late embryogenesis abundant like protein).  Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21).  Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses. sim
MSGI1_8393	157976966	6.6	31.5	11.7	11.2	2.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_8056	157976968	52.1	61.6	32.6	68.2	0	1.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_7448	157976983	0	0	87.9	193.7	0	1.1	-7.5	-8.6	not assigned.unknown	not assigned.unknown
MSGI1_9663	157977001	51	21.5	27.7	28.1	-1.2	0	0	0	stress.abiotic.unspecified	"SAH7 Encodes a protein, expressed in leaves, with similarity to pollen allergens. similar to pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] (TAIR:AT1G78040.2); similar to pollen-specific protein [Vitis pseudoreticulata] (GB:AB"
MSGI1_12234	157977006	75.7	43.1	14.2	26.9	0	0	2.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L12 (RPL12C)  Identical to 60S ribosomal protein L12-3 (RPL12C) [Arabidopsis Thaliana] (GB:Q9FF52); similar to 60S ribosomal protein L12 (RPL12B) [Arabidopsis thaliana] (TAIR:AT3G53430.1); similar to 60S ribosomal protein L12 [Capsic
MSGI1_11581	157977011	238.7	125.9	83.3	106.4	0	0	1.5	0	PS.lightreaction.photosystem I.PSI polypeptide subunits	"PSAF (photosystem I subunit F) Encodes subunit F of photosystem I. similar to photosystem I reaction center subunit III [Vigna radiata] (GB:AAD27880.2); contains InterPro domain Photosystem I reaction center protein PsaF, subunit III; (InterPro:IPR003666"
MSGI1_13859	157977016	49.2	15.5	44.4	24.9	-1.7	0	0	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	photosystem II family protein  similar to photosystem II 11 kD protein [Thermosynechococcus elongatus BP-1] (GB:NP_683253.1); similar to Os03g0333400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050024.1)
MSGI1_6956	157977024	7.7	14.9	28.7	15.2	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_8687	157977026	100.7	38.5	49.1	37.3	-1.4	0	1	0	DNA.synthesis/chromatin structure.histone	"histone H1, putative  Identical to Histone H1.1 [Arabidopsis Thaliana] (GB:P26568); similar to histone H1.2 [Arabidopsis thaliana] (TAIR:AT2G30620.1); similar to histone H1 [Lathyrus sativus] (GB:AAK29452.1); similar to histone H1 (GB:AAC41651.1); simila"
MSGI1_17246	157977027	29.6	6.7	30.4	18.9	-2.1	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_17246	157977027	29.6	6.7	30.4	18.9	-2.1	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_8709	157977036	41.7	44.9	29.9	60.7	0	1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_13756	157977040	87.4	47.6	28	53.2	0	0	1.6	0	protein.synthesis.misc ribososomal protein	"40S ribosomal protein S15 (RPS15D)  Identical to 40S ribosomal protein S15-4 (RPS15D) [Arabidopsis Thaliana] (GB:Q9FY64); Identical to 40S ribosomal protein S15-1 (RPS15A) [Arabidopsis Thaliana] (GB:Q08112); similar to RPS15 (RIBOSOMAL PROTEIN S15), stru"
MSGI1_24732	157977041	76.4	55.8	27.8	45.3	0	0	1.5	0	cell wall	ACBP (ACYL-COA-BINDING PROTEIN); acyl-CoA binding Acyl-CoA-binding protein. Bind acyl-CoA esters and protect acyl-CoAs from degradation by microsomal acyl-hydrolases. Identical to Acyl-CoA-binding protein (ACBP) [Arabidopsis Thaliana] (GB:P57752); simila
MSGI1_24732	157977041	76.4	55.8	27.8	45.3	0	0	1.5	0	lipid metabolism.FA synthesis and FA elongation.acyl-CoA binding protein	ACBP (ACYL-COA-BINDING PROTEIN); acyl-CoA binding Acyl-CoA-binding protein. Bind acyl-CoA esters and protect acyl-CoAs from degradation by microsomal acyl-hydrolases. Identical to Acyl-CoA-binding protein (ACBP) [Arabidopsis Thaliana] (GB:P57752); simila
MSGI1_10096	157977042	20.2	9.3	2.7	4.1	0	0	2.9	0	protein.synthesis.misc ribososomal protein	EMB2386 (EMBRYO DEFECTIVE 2386); structural constituent of ribosome  Identical to 60S ribosomal protein L19-1 (RPL19A) [Arabidopsis Thaliana] (GB:Q9SRX2); similar to 60S ribosomal protein L19 (RPL19C) [Arabidopsis thaliana] (TAIR:AT4G02230.1); similar to
MSGI1_9753	157977054	38	19.9	12	21	0	0	1.7	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S8 (RPS8B)  Identical to 40S ribosomal protein S8-2 (RPS8B) [Arabidopsis Thaliana] (GB:Q9FIF3); similar to 40S ribosomal protein S8 (RPS8A) [Arabidopsis thaliana] (TAIR:AT5G20290.1); similar to ribosomal protein S8 [Oryza sativa (jap
MSGI1_13485	157977055	24.9	5.6	41.7	15.2	-2.2	-1.5	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_13485	157977055	24.9	5.6	41.7	15.2	-2.2	-1.5	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_10812	157977058	7.8	8.9	13.9	36.3	0	1.4	0	-2	not assigned.unknown	not assigned.unknown
MSGI1_13342	157977075	6.2	7	19.5	29.4	0	0	0	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_18276	157977106	100.5	66.7	37.3	80.7	0	1.1	1.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L26 (RPL26B)  Identical to 60S ribosomal protein L26-2 (RPL26B) [Arabidopsis Thaliana] (GB:Q9FJX2); similar to 60S ribosomal protein L26 (RPL26A) [Arabidopsis thaliana] (TAIR:AT3G49910.1); similar to Ribosomal protein L24/L26 [Medic
MSGI1_10355	157977125	21.4	9.7	3.3	6.1	0	0	2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_15037	157977132	1.8	2.2	34	26.5	0	0	-4.2	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_12196	157977147	49.3	67.7	199.1	119.8	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_22522	157977154	50.4	21.1	18.9	20.7	-1.3	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_15751	157977157	35.4	18.8	8.9	10.9	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_15637	157977179	39.8	43.9	242.1	51.3	0	-2.2	-2.6	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_15637	157977179	39.8	43.9	242.1	51.3	0	-2.2	-2.6	0	stress.abiotic.drought/salt	similar to nodulin-related [Arabidopsis thaliana] (TAIR:AT2G03440.1); similar to drought-induced protein SDi-6 - common sunflower (fragment) (GB:S71562)
MSGI1_13755	157977195	61.5	25.1	16.6	12.4	-1.3	0	1.9	0	DNA.synthesis/chromatin structure.histone	"histone H2B, putative  Identical to Histone H2B.1 (HTB1) [Arabidopsis Thaliana] (GB:Q9LQQ4;GB:Q8L950); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold; (InterPro:"
MSGI1_10752	157977215	10.6	12.7	16.8	41.1	0	1.3	0	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_7716	157977226	41	20.2	11.9	23.6	0	0	1.8	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S8 (RPS8B)  Identical to 40S ribosomal protein S8-2 (RPS8B) [Arabidopsis Thaliana] (GB:Q9FIF3); similar to 40S ribosomal protein S8 (RPS8A) [Arabidopsis thaliana] (TAIR:AT5G20290.1); similar to ribosomal protein S8 [Oryza sativa (jap
MSGI1_9881	157977232	40.9	53.9	40.5	88.2	0	1.1	0	0	RNA.regulation of transcription.SNF7	SNF7 family protein  similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT1G73030.1); similar to putative developmental protein [Nicotiana benthamiana] (GB:AAO59435.1); contains InterPro domain Snf7; (InterPro:IPR005024)
MSGI1_13928	157977238	20.3	8.6	129.9	27	0	-2.3	-2.7	0	cell wall	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_13928	157977238	20.3	8.6	129.9	27	0	-2.3	-2.7	0	lipid metabolism.lipid transfer proteins etc	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_8645	157977239	58.4	24.9	16.1	32.8	-1.2	0	1.9	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S9 (RPS9C)  Identical to 40S ribosomal protein S9-2 (RPS9C) [Arabidopsis Thaliana] (GB:Q9FLF0); similar to 40S ribosomal protein S9 (RPS9B) [Arabidopsis thaliana] (TAIR:AT5G15200.1); similar to 40S ribosomal protein S9 [Catharanthus
MSGI1_15724	157977245	36.9	11	35.4	31.6	-1.7	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_15724	157977245	36.9	11	35.4	31.6	-1.7	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_11306	157977253	46.1	68.4	12.1	20.1	0	0	1.9	1.8	redox.dismutases and catalases	"CSD1 (copper/zinc superoxide dismutase 1); copper, zinc superoxide dismutase Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. Identical to Superoxide dismutase [Cu-Zn] (EC 1.15.1.1) (SODCC) [Arabidopsis Tha"
MSGI1_11217	157977263	20.8	24.2	25.1	88.7	0	1.8	0	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_13970	157977269	39.7	142.3	36.8	283.1	1.8	2.9	0	-1	not assigned.unknown	not assigned.unknown
MSGI1_11024	157977276	28.8	12.8	8.7	18	0	0	1.7	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L10 (RPL10B)  Identical to 60S ribosomal protein L10-2 (Wilms tumor suppressor protein homolog) (RPL10B) [Arabidopsis Thaliana] (GB:Q08770;GB:Q42327;GB:Q9ZVG7); similar to 60S ribosomal protein L10 (RPL10A) / Wilm's tumor suppressor
MSGI1_19135	157977288	111.5	77.2	59.3	26.9	0	-1.1	0	1.5	not assigned.unknown	not assigned.unknown
MSGI1_7519	157977289	10.4	12.3	25.3	40.2	0	0	0	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_10811	157977296	108.1	48.5	32.7	66.5	-1.2	1	1.7	0	protein.synthesis.misc ribososomal protein	EMB2386 (EMBRYO DEFECTIVE 2386); structural constituent of ribosome  Identical to 60S ribosomal protein L19-1 (RPL19A) [Arabidopsis Thaliana] (GB:Q9SRX2); similar to 60S ribosomal protein L19 (RPL19C) [Arabidopsis thaliana] (TAIR:AT4G02230.1); similar to
MSGI1_9058	157977297	341.1	372.6	902.7	628.6	0	0	-1.4	0	misc.peroxidases	PRXR1 (peroxidase 42); peroxidase Encodes AT4g21960 (AT4g21960/T8O5_170). Identical to Peroxidase 42 precursor (EC 1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b) (PER42) [Arabidopsis Thaliana] (GB:Q9SB81;GB:Q41937;GB:Q42579;GB:Q43730); similar to peroxida
MSGI1_9058	157977297	341.1	372.6	902.7	628.6	0	0	-1.4	0	cell wall	PRXR1 (peroxidase 42); peroxidase Encodes AT4g21960 (AT4g21960/T8O5_170). Identical to Peroxidase 42 precursor (EC 1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b) (PER42) [Arabidopsis Thaliana] (GB:Q9SB81;GB:Q41937;GB:Q42579;GB:Q43730); similar to peroxida
MSGI1_12471	157977339	173	141.6	88.7	156.5	0	0	1	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	PSBY (photosystem II BY) PsbY precursor (psbY) mRNA. This single nuclear gene is imported into the chloroplasts where it is processed into two integral membrane proteins with identical topology (PsbY-1 and PsbY-2). The protein appears to bind manganese b
MSGI1_22599	157977357	47.7	17.9	26.8	40.6	-1.4	0	0	0	protein.synthesis.misc ribososomal protein	60S acidic ribosomal protein P2 (RPP2B)  Identical to 60S acidic ribosomal protein P2-2 (RPP2B) [Arabidopsis Thaliana] (GB:Q9SLF7;GB:Q8LB03); similar to 60S acidic ribosomal protein P2 (RPP2A) [Arabidopsis thaliana] (TAIR:AT2G27720.1); similar to 60s acid
MSGI1_16343	157977364	40.8	12.4	20.6	10.7	-1.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_10466	157977372	50.8	13.4	25.8	34.2	-1.9	0	0	0	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_7880	157977376	152.2	67.5	74.1	129.5	-1.2	0	1	0	PS.calvin cyle.GAP	"GAPA-2; glyceraldehyde-3-phosphate dehydrogenase  similar to GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT), glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G26650.1); similar to glyceraldehyde-3-phosphate dehydrogenas"
MSGI1_9681	157977403	19.1	26.9	48	68.7	0	0	-1.3	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_12021	157977406	18.8	21.9	78.9	11.4	0	-2.8	-2.1	0	stress.abiotic.drought/salt	similar to nodulin-related [Arabidopsis thaliana] (TAIR:AT2G03440.1); similar to drought-induced protein SDi-6 - common sunflower (fragment) (GB:S71562)
MSGI1_12021	157977406	18.8	21.9	78.9	11.4	0	-2.8	-2.1	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_8187	157977407	79.6	33.5	31	60.6	-1.2	1	1.4	0	cell wall	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G61820.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japoni
MSGI1_8187	157977407	79.6	33.5	31	60.6	-1.2	1	1.4	0	protein.degradation.aspartate protease	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G61820.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japoni
MSGI1_11841	157977409	3.6	0.9	2.7	13.5	0	0	0	-3.9	cell wall	ATOSM34 (OSMOTIN 34) osmotin-like protein Identical to Osmotin-like protein OSM34 precursor (OSM34) [Arabidopsis Thaliana] (GB:P50700;GB:Q9T0D2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75050.1); similar to osmotin-like protein I [Gos
MSGI1_11841	157977409	3.6	0.9	2.7	13.5	0	0	0	-3.9	stress.abiotic	ATOSM34 (OSMOTIN 34) osmotin-like protein Identical to Osmotin-like protein OSM34 precursor (OSM34) [Arabidopsis Thaliana] (GB:P50700;GB:Q9T0D2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75050.1); similar to osmotin-like protein I [Gos
MSGI1_15179	157977428	0.2	0.2	21.5	17.6	0	0	-6.7	-6.5	not assigned.unknown	not assigned.unknown
MSGI1_18548	157977436	78.2	43.4	26.1	37.5	0	0	1.6	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S16 (RPS16A)  Identical to 40S ribosomal protein S16-3 (RPS16C) [Arabidopsis Thaliana] (GB:Q42340); Identical to 40S ribosomal protein S16-1 (RPS16A) [Arabidopsis Thaliana] (GB:Q9SK22); similar to 40S ribosomal protein S16 (RPS16C) [
MSGI1_8882	157977437	142.8	91	68.6	112.6	0	0	1.1	0	cell wall	"calnexin 1 (CNX1)  Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like l"
MSGI1_8882	157977437	142.8	91	68.6	112.6	0	0	1.1	0	signalling.calcium	"calnexin 1 (CNX1)  Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like l"
MSGI1_7652	157977445	58.7	43.3	24	43.9	0	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_7429	157977449	13.1	36.4	38.7	20.9	1.5	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_15677	157977458	107	54.3	21.9	51.7	0	1.2	2.3	0	protein.synthesis.misc ribososomal protein	EMB2171 (EMBRYO DEFECTIVE 2171); structural constituent of ribosome  Identical to 60S ribosomal protein L23 (RPL23C) [Arabidopsis Thaliana] (GB:P49690;GB:Q8L8P0;GB:Q9SDB5); similar to 60S ribosomal protein L23 (RPL23A) [Arabidopsis thaliana] (TAIR:AT1G044
MSGI1_8053	157977468	96.4	26	27.6	37.9	-1.9	0	1.8	0	PS.lightreaction.photosystem II.LHC-II	"CAB2 (Chlorophyll a/b-binding protein 2); chlorophyll binding Encodes lhcb1.1 a component of the LHCIIb light harvesting complex associated with photosystem II. Identical to Chlorophyll a-b binding protein 2, chloroplast precursor (LHCII type I CAB-2) (C"
MSGI1_27875	157977490	29	40.2	77.9	79.1	0	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_9547	157977499	11.1	12.8	0.3	0.4	0	0	5.2	5	not assigned.unknown	not assigned.unknown
MSGI1_8242	157977500	55.6	19.2	24.2	16.5	-1.5	0	1.2	0	cell wall.degradation.pectate lyases and polygalacturonases	pectate lyase family protein  Identical to Probable pectate lyase 22 precursor (EC 4.2.2.2) [Arabidopsis Thaliana] (GB:Q93Z25;GB:Q9FMK5); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G24780.1); similar to pectate lyase family p
MSGI1_14462	157977502	143.6	86.8	54.3	127.1	0	1.2	1.4	0	glycolysis.enolase	LOS2 (Low expression of osmotically responsive genes 1); phosphopyruvate hydratase Involved in light-dependent cold tolerance and encodes an enolase. Identical to Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase) (2-phospho-D- glycerate hydro-lyase)
MSGI1_7483	157977506	43.3	16.2	21.8	26.9	-1.4	0	0	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"50S ribosomal protein L21, chloroplast / CL21 (RPL21)  Identical to 50S ribosomal protein L21, chloroplast precursor (CL21) (RPL21) [Arabidopsis Thaliana] (GB:P51412;GB:Q9SMM2); similar to NFD1 (NUCLEAR FUSION DEFECTIVE 1), structural constituent of ribo"
MSGI1_16342	157977512	100.9	55.3	26.3	32.6	0	0	1.9	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S16 (RPS16A)  Identical to 40S ribosomal protein S16-3 (RPS16C) [Arabidopsis Thaliana] (GB:Q42340); Identical to 40S ribosomal protein S16-1 (RPS16A) [Arabidopsis Thaliana] (GB:Q9SK22); similar to 40S ribosomal protein S16 (RPS16C) [
MSGI1_14684	157977527	62.7	14.7	50.8	36.3	-2.1	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_14684	157977527	62.7	14.7	50.8	36.3	-2.1	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_10669	157977533	521.9	129.2	346.6	342.7	-2	0	0	-1.4	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_12020	157977538	64.6	78.3	223.8	314	0	0	-1.8	-2	not assigned.unknown	not assigned.unknown
MSGI1_10465	157977562	8.8	12.7	66.6	25.5	0	-1.4	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_8904	157977597	27	34.1	88.9	139.4	0	0	-1.7	-2	not assigned.unknown	not assigned.unknown
MSGI1_8783	157977598	70.8	70.3	30.5	12.8	0	0	1.2	2.5	cell.organisation	"ANNAT1 (ANNEXIN ARABIDOPSIS 1); calcium ion binding / calcium-dependent phospholipid binding Encodes a member of the annexin gene family, a diverse, multigene family of calcium-dependent, membrane-binding proteins. The protein was determined to have pero"
MSGI1_15797	157977599	53.3	33	14.8	50.6	0	1.8	1.8	0	protein.synthesis.misc ribososomal protein	EMB2171 (EMBRYO DEFECTIVE 2171); structural constituent of ribosome  Identical to 60S ribosomal protein L23 (RPL23C) [Arabidopsis Thaliana] (GB:P49690;GB:Q8L8P0;GB:Q9SDB5); similar to 60S ribosomal protein L23 (RPL23A) [Arabidopsis thaliana] (TAIR:AT1G044
MSGI1_8989	157977601	62.5	29.2	29.8	55.6	-1.1	0	1.1	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L10 (RPL10B)  Identical to 60S ribosomal protein L10-2 (Wilms tumor suppressor protein homolog) (RPL10B) [Arabidopsis Thaliana] (GB:Q08770;GB:Q42327;GB:Q9ZVG7); similar to 60S ribosomal protein L10 (RPL10A) / Wilm's tumor suppressor
MSGI1_12972	157977608	19.5	24.5	40	65.6	0	0	0	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_10808	157977613	5.4	4.8	46.1	70.9	0	0	-3.1	-3.9	protein.synthesis.initiation	EIF-5A (eukaryotic translation initiation factor 5A-1); translation initiation factor Encodes eukaryotic translation initiation factor 5A (EIF-5A). Identical to Eukaryotic translation initiation factor 5A-1 (eIF-5A-1) [Arabidopsis Thaliana] (GB:Q9XI91;GB
MSGI1_13136	157977616	0	0.1	25.7	57.8	0	1.2	-5.7	-9.2	not assigned.unknown	not assigned.unknown
MSGI1_17552	157977624	7.7	11.3	82.8	251.3	0	1.6	-3.4	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_13969	157977625	5.5	8.4	12.9	28.9	0	0	0	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_13380	157977640	46.7	22.9	52.1	63.1	0	0	0	-1.5	PS.lightreaction.other electron carrier (ox/red).ferredoxin	"FED A (FERREDOXIN 2); electron carrier/ iron ion binding encodes a ferredoxin gene Identical to Ferredoxin-1, chloroplast precursor (PETF1) [Arabidopsis Thaliana] (GB:P16972); similar to ATFD1 (FERREDOXIN 1), electron carrier/ iron ion binding [Arabidops"
MSGI1_11134	157977653	134.1	76.4	47.2	120.8	0	1.4	1.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L15 (RPL15A)  Identical to 60S ribosomal protein L15-2 (RPL15B) [Arabidopsis Thaliana] (GB:Q8VYF1;GB:O23582); Identical to 60S ribosomal protein L15-1 (RPL15A) [Arabidopsis Thaliana] (GB:O23515); similar to 60S ribosomal protein L15
MSGI1_10728	157977655	746.4	147.8	264.4	352.3	-2.3	0	1.5	-1.3	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_8160	157977674	18.4	15.1	43.4	15.2	0	-1.5	0	0	cell wall	"glucan endo-1,3-beta-glucosidase-related  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29380.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF99730.1); similar to expressed protein [Oryza sativa (japonica cu"
MSGI1_8160	157977674	18.4	15.1	43.4	15.2	0	-1.5	0	0	"misc.gluco-, galacto- and mannosidases"	"glucan endo-1,3-beta-glucosidase-related  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29380.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF99730.1); similar to expressed protein [Oryza sativa (japonica cu"
MSGI1_8160	157977674	18.4	15.1	43.4	15.2	0	-1.5	0	0	"misc.beta 1,3 glucan hydrolases"	"glucan endo-1,3-beta-glucosidase-related  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29380.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF99730.1); similar to expressed protein [Oryza sativa (japonica cu"
MSGI1_8160	157977674	18.4	15.1	43.4	15.2	0	-1.5	0	0	cell wall	"glucan endo-1,3-beta-glucosidase-related  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29380.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF99730.1); similar to expressed protein [Oryza sativa (japonica cu"
MSGI1_13171	161610781	111.1	50.4	30.2	42.9	-1.1	0	1.9	0	protein.synthesis.misc ribososomal protein	ATRPS5B (RIBOSOMAL PROTEIN 5B); structural constituent of ribosome One of two genes encoding the ribosomal protein S5. Expressed at a lower level compared to ATRPS5A. Identical to 40S ribosomal protein S5-1 (RPS5A) [Arabidopsis Thaliana] (GB:Q9ZUT9;GB:Q8
MSGI1_17139	161610791	2.1	3.1	50.5	1.3	0	-5.3	-4.6	0	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN1 (DARK INDUCIBLE 6) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumul"
MSGI1_24174	161610798	78	39.9	32.6	51.6	0	0	1.3	0	protein.synthesis.misc ribososomal protein	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); structural constituent of ribosome Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identical to 60S ribosomal protein L5-1 (ATL5) [Arabid
MSGI1_18145	170677085	3858.7	979	2554.8	3399.8	-2	0	0	-1.8	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_34145	170677096	4	5.8	457.6	11.8	0	-5.3	-6.8	0	not assigned.unknown	not assigned.unknown
MSGI1_17712	170677102	36.4	8	19.4	17.4	-2.2	0	0	0	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_54644	170677106	18.2	15.8	109.6	19.3	0	-2.5	-2.6	0	major CHO metabolism.degradation.starch.starch cleavage	"BMY7/TR-BAMY (beta-amylase 7); beta-amylase  similar to CT-BMY (BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to beta-amylase 1 [Nicotiana langsdorffii x Nicotiana sanderae] (GB:AAY89374.1); similar to putative chloropl"
MSGI1_43382	170677107	47	101.9	103.3	67.2	1.1	0	-1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_46146	170677109	105.8	118.8	244.3	157.2	0	0	-1.2	0	PS.aminotransferases peroxisomal	AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE) Encodes a peroxisomal photorespiratory enzyme that catalyzes transamination reactions with multiple substrates. It is involved in photorespiration. Identical to Serine--glyoxylate aminotransferase (EC 2.6.1.45) (
MSGI1_46146	170677109	105.8	118.8	244.3	157.2	0	0	-1.2	0	amino acid metabolism.synthesis.central amino acid metabolism.alanine.alanine-glyoxylate aminotransferase	AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE) Encodes a peroxisomal photorespiratory enzyme that catalyzes transamination reactions with multiple substrates. It is involved in photorespiration. Identical to Serine--glyoxylate aminotransferase (EC 2.6.1.45) (
MSGI1_57348	170677110	0	0	32.5	0	0	-6	-6	0	not assigned.unknown	not assigned.unknown
MSGI1_31670	170677114	105	47.7	394.1	37.5	-1.1	-3.4	-1.9	0	redox.ascorbate and glutathione.glutathione	"ATGPX6 (GLUTATHIONE PEROXIDASE 6); glutathione peroxidase Encodes glutathione peroxidase. Identical to Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial precursor (EC 1.11.1.12) (PHGPx) (AtGPX1) (GPX6) [Arabidopsis Thaliana] (GB"
MSGI1_22214	170677115	59.3	24.7	22.7	54.8	-1.3	1.3	1.4	-1.1	PS.calvin cyle.GAP	GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase Encodes one of the two subunits forming the photosynthetic glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and as such a constituent of the supramolecula
MSGI1_31090	170677118	0.5	0.5	26.2	65.1	0	1.3	-5.7	-7	not assigned.unknown	not assigned.unknown
MSGI1_96532	170677119	4.9	2.4	1033.3	8.6	0	-6.9	-7.7	0	not assigned.unknown	not assigned.unknown
MSGI1_46776	170677130	64.9	63.8	17.3	34.3	0	0	1.9	0	minor CHO metabolism.myo-inositol.InsP Synthases	"MI-1-P SYNTHASE (Myo-inositol-1-phosphate synthase); inositol-3-phosphate synthase Columbia myo-inositol-1-phosphate synthase mRNA, complete Identical to Inositol-3-phosphate synthase isozyme 1 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 1) (MI-1-P"
MSGI1_37873	170677136	0.2	0.5	12.9	0.3	0	-5.4	-6	0	minor CHO metabolism.raffinose family.galactinol synthases.known	"ATGOLS1 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 1); transferase, transferring hexosyl groups  similar to ATGOLS2 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 2), transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabido"
MSGI1_68158	170677139	1.5	2.1	78.6	0.2	0	-8.6	-5.7	0	minor CHO metabolism.raffinose family.galactinol synthases.known	"ATGOLS2 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 2); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  similar to ATGOLS3 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 3), transferase, transferring glycosyl groups / trans"
MSGI1_57347	170677160	0	0.2	62.5	0	0	-7	-7	0	not assigned.unknown	not assigned.unknown
MSGI1_11305	20381681	542.4	167.9	311.9	220.8	-1.7	0	0	0	stress.abiotic.unspecified	major latex protein-related / MLP-related  Identical to MLP-like protein 43 (MLP43) [Arabidopsis Thaliana] (GB:Q9SSK5); similar to MLP28 (MLP-LIKE PROTEIN 28) [Arabidopsis thaliana] (TAIR:AT1G70830.3); similar to major latex-like protein [Prunus persica]
MSGI1_30339	20381690	144.8	78	66	115.8	0	0	1.1	0	protein.synthesis.misc ribososomal protein	ATRPS13A (RIBOSOMAL PROTEIN S13A); structural constituent of ribosome Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development Identical to 40S ribosomal protein S13-1 (RPS13A) [Arabidopsis Thaliana] (GB:P59223;GB:P49203;G
MSGI1_22143	20381697	96.2	28.4	337.6	222.3	-1.8	0	-1.8	-3	TCA / org. transformation.carbonic anhydrases	"CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding  Identical to Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase) (CA1) [Arabidopsis Thaliana] (GB:P27140;GB:Q8RWW2;GB:Q93VR8); similar to CA2 (BETA CARBONIC A"
MSGI1_8402	20381698	2.9	1.4	90.2	114.2	0	0	-5	-6.3	PS.lightreaction.other electron carrier (ox/red).ferredoxin reductase	ATLFNR1 (LEAF FNR 1); NADPH dehydrogenase/ oxidoreductase Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase.  It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid.  The affinity of this enzyme for fer
MSGI1_18478	20381703	22.5	29	15.6	47.7	0	1.6	0	0	stress.abiotic.unspecified	allergen V5/Tpx-1-related family protein  similar to allergen V5/Tpx-1-related family protein [Arabidopsis thaliana] (TAIR:AT5G57625.1); similar to Pathogenesis-related protein PR-1 precursor (GB:Q40374); contains InterPro domain Ves allergen; (InterPro:I
MSGI1_13447	20381710	14.1	7.3	48.3	5	0	-3.3	-1.8	0	redox.ascorbate and glutathione.glutathione	"ATGPX6 (GLUTATHIONE PEROXIDASE 6); glutathione peroxidase Encodes glutathione peroxidase. Identical to Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial precursor (EC 1.11.1.12) (PHGPx) (AtGPX1) (GPX6) [Arabidopsis Thaliana] (GB"
MSGI1_13590	20381714	15.5	1.1	4.1	0.8	-3.8	0	0	0	lipid metabolism.Phospholipid synthesis	ATGPAT6/GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase Encodes a protein with glycerol-3-phosphate acyltransferase activity. Identical to Glycerol-3-phosphate acyltransferase 6 (EC 2.3.1.15)
MSGI1_8545	20381717	34.7	23.8	106.4	145.4	0	0	-1.6	-2.6	PS.lightreaction.photosystem II.LHC-II	"chlorophyll A-B binding protein CP29 (LHCB4)  Identical to Chlorophyll a-b binding protein CP29.1, chloroplast precursor (LHCII protein 4.1) (LHCB4.1) (LHCB4.1) [Arabidopsis Thaliana] (GB:Q07473;GB:Q8RWN1;GB:Q94AD5;GB:Q94K17); similar to LHCB4.2 (LIGHT H"
MSGI1_14638	20381721	176.2	2.9	53.4	14.2	-5.9	-1.9	1.7	0	hormone metabolism.gibberelin.induced-regulated-responsive-activated	"GASA4 (GAST1 PROTEIN HOMOLOG 4) gibberellin-regulated (GASA4) Identical to Gibberellin-regulated protein 4 precursor (GASA4) [Arabidopsis Thaliana] (GB:P46690;GB:O49593); similar to gibberellin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT"
MSGI1_22744	20381724	29.7	22.7	7.3	24.1	0	0	2	0	redox.ascorbate and glutathione	ATMAPR2 (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 2); heme binding / transition metal ion binding  Identical to Putative steroid-binding protein 3 (AtMP3) (MP3) [Arabidopsis Thaliana] (GB:Q9SK39); similar to MSBP1 (ARABIDOPSIS
MSGI1_15211	20381727	113.8	2.4	23.1	1.1	-5.6	-4.4	2.3	0	stress.abiotic.unspecified	Bet v I allergen family protein  Identical to MLP-like protein 423 (MLP423) [Arabidopsis Thaliana] (GB:Q93VR4;GB:Q8L9L8;GB:Q9LR93); similar to MLP34 (MLP-LIKE PROTEIN 34) [Arabidopsis thaliana] (TAIR:AT1G70850.3); similar to Bet v I allergen [Medicago tru
MSGI1_8629	20381734	505.4	343.5	258.8	454	0	0	1	0	PS.lightreaction.photosystem II.LHC-II	LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding photosystem II encoding the light-harvesting chlorophyll a/b binding protein CP26 of the antenna system of the photosynthetic apparatus Identical to Chlorophyll a-b binding protein
MSGI1_15244	20381735	60.4	14.5	32.4	40.3	-2.1	0	0	-1.5	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_9212	20381752	40.2	86.5	69.4	81.7	1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_40941	28151200	24.8	31.2	20.2	65.2	0	1.7	0	-1.1	not assigned.unknown	not assigned.unknown
MSGI1_37703	283574867	237.4	111.3	112.1	147.4	-1.1	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_16939	283574868	19.8	13.8	45.3	8.4	0	-2.4	0	0	signalling.phosphinositides.phosphoinositide phospholipase C	"ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phosp"
MSGI1_16939	283574868	19.8	13.8	45.3	8.4	0	-2.4	0	0	lipid metabolism.lipid degradation.lysophospholipases.phosphoinositide phospholipase C	"ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phosp"
MSGI1_40940	283574913	205.1	867.4	199.3	553.8	2.1	1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_34144	283574925	1.9	33.5	8	19	4.1	0	0	0	protein.degradation.subtilases	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_34143	283574926	0.7	13	0.7	0.9	4.2	0	0	3.9	protein.degradation.subtilases	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_11275	283574927	83.6	43.9	20	55	0	1.5	2.1	0	stress.biotic	trypsin and protease inhibitor family protein / Kunitz family protein  similar to trypsin and protease inhibitor family protein / Kunitz family protein [Arabidopsis thaliana] (TAIR:AT1G73260.1); similar to Lemir [Lycopersicon esculentum] (GB:AAC63057.1);
MSGI1_55970	283574932	2.2	15.3	2.9	15.7	2.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_10019	283574934	13.9	56.6	75.5	18.2	2	-2.1	-2.4	1.6	major CHO metabolism.degradation.starch.starch cleavage	"BMY3 (beta-amylase 3); beta-amylase putative beta-amylase BMY3 (BMY3) similar to CT-BMY (BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to beta-amylase [Glycine max] (GB:CAI39245.1); contains InterPro domain Glycoside hy"
MSGI1_11250	284022783	85.3	120.8	177.6	55.5	0	-1.7	-1.1	1.1	not assigned.unknown	not assigned.unknown
MSGI1_16938	284022796	3.5	2.5	43.6	120.2	0	1.5	-3.6	-5.6	misc.short chain dehydrogenase/reductase (SDR)	short-chain dehydrogenase/reductase (SDR) family protein  similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G03980.1); similar to short chain dehydrogenase [Solanum tuberosum] (GB:BAE46415.1); contains Int
MSGI1_12675	284022815	1.3	12	23.3	4.4	0	-2.4	-4.2	0	RNA.regulation of transcription.C3H zinc finger family	"zinc finger (CCCH-type) family protein  similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT4G29190.1); similar to Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE91976.1); contains InterPro domain Zinc finger, CCCH-type;"
MSGI1_26755	284022817	32.3	33.1	6	7	0	0	2.4	2.2	RNA.transcription	"RPB15.9 (RNA polymerase II 15.9) 15.9 kDa subunit of RNA polymerase II similar to 4D11_3 [Brassica rapa subsp. pekinensis] (GB:AAZ67517.1); contains InterPro domain HRDC-like; (InterPro:IPR010997); contains InterPro domain RNA polymerase II, RPB4; (Inter"
MSGI1_9136	284022818	2	2.4	17.8	27.5	0	0	-3.2	-3.5	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G04790.1); similar to zinc finger family protein, putative, expressed [Oryza sativa (japonica cultivar-gro"
MSGI1_37702	284022827	125.3	59.9	67.1	66.6	-1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_33766	284022830	65.7	49.1	28.2	29.2	0	0	1.2	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S29 (RPS29C)  Identical to 40S ribosomal protein S29 (RPS29C) [Arabidopsis Thaliana] (GB:Q680P8;GB:Q9LDT9); similar to 40S ribosomal protein S29 (RPS29B) [Arabidopsis thaliana] (TAIR:AT3G44010.1); similar to 40S ribosomal protein S29
MSGI1_24481	284022831	3.5	59.3	20.1	77	4.1	1.9	-2.5	0	protein.degradation.subtilases	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_24481	284022831	3.5	59.3	20.1	77	4.1	1.9	-2.5	0	cell wall	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_41279	284022835	278.3	141.4	82	133.3	0	0	1.8	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L36 (RPL36C)  Identical to 60S ribosomal protein L36-3 (RPL36C) [Arabidopsis Thaliana] (GB:Q9LZ57); similar to 60S ribosomal protein L36 (RPL36B) [Arabidopsis thaliana] (TAIR:AT3G53740.4); similar to ribosomal protein L36 [Triticum a
MSGI1_12306	284022836	39.5	19.5	12.1	23.6	0	0	1.7	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S14 (RPS14B)  Identical to 40S ribosomal protein S14-2 (RPS14B) [Arabidopsis Thaliana] (GB:Q9CAX6); Identical to 40S ribosomal protein S14-1 (RPS14A) [Arabidopsis Thaliana] (GB:Q9SIH0); similar to 40S ribosomal protein S14 (RPS14A) [
MSGI1_10323	284022839	96.2	54.6	47.7	74.8	0	0	1	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S3A (RPS3aB)  Identical to 40S ribosomal protein S3a-2 (RPS3AB) [Arabidopsis Thaliana] (GB:Q42262;GB:O82816;GB:Q42293); similar to 40S ribosomal protein S3A (RPS3aA) [Arabidopsis thaliana] (TAIR:AT3G04840.1); similar to 40S ribosomal
MSGI1_47579	284022845	60.1	41.5	21.5	41.5	0	0	1.5	0	RNA.regulation of transcription.putative transcription regulator	"ATG2 (G2p-related protein); metalloexopeptidase putative nuclear DNA-binding protein G2p (AtG2) mRNA, similar to MAP2A (METHIONINE AMINOPEPTIDASE 2A), methionyl aminopeptidase [Arabidopsis thaliana] (TAIR:AT2G44180.1); similar to cold-induced cell cycle-"
MSGI1_27874	284022855	14.2	7	42.3	11.5	0	-1.9	-1.6	0	transporter.sugars	"ATINT1 (INOSITOL TRANSPORTER 1); carbohydrate transporter/ sugar porter  Identical to Probable inositol transporter 1 (INT1) [Arabidopsis Thaliana] (GB:Q8VZR6;GB:O22848); similar to ATINT2 (INOSITOL TRANSPORTER 2), carbohydrate transporter/ sugar porter"
MSGI1_25957	284022860	5.1	1.9	22.9	7.8	0	0	-2.2	0	transporter.sugars	"ATINT1 (INOSITOL TRANSPORTER 1); carbohydrate transporter/ sugar porter  Identical to Probable inositol transporter 1 (INT1) [Arabidopsis Thaliana] (GB:Q8VZR6;GB:O22848); similar to ATINT2 (INOSITOL TRANSPORTER 2), carbohydrate transporter/ sugar porter"
MSGI1_8278	284022867	31.2	39	22.7	59.4	0	1.4	0	0	redox.ascorbate and glutathione.ascorbate	"VTC2 (VITAMIN C DEFECTIVE 2) a gene encoding a novel protein is involved in ascorbate biosynthesis. recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxan"
MSGI1_15243	284022870	13.4	33.1	21.3	3.9	0	-2.4	0	3.1	not assigned.unknown	not assigned.unknown
MSGI1_20975	284022885	18.6	10.5	35.5	12.2	0	-1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_53584	284022890	3.2	3.1	25.2	28.1	0	0	-3	-3.2	not assigned.unknown	not assigned.unknown
MSGI1_10806	284022897	10	29.1	37.4	8.6	0	-2.1	-1.9	1.8	not assigned.unknown	not assigned.unknown
MSGI1_44784	284022919	0.5	0.1	11.4	2.7	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_48058	30052652	9.5	15.4	55	9.5	0	-2.5	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_44401	30052653	8.6	16.7	58.2	49.2	0	0	-2.8	-1.6	transport.amino acids	AAP8 (amino acid permease 8); amino acid permease Encodes a high affinity amino acid transporter that is probably responsible for import of organic nitrogen into developing seeds. One of eight gene family members that encode amino acid permeases.  Most c
MSGI1_46774	3297887	14	76.2	34.8	13.8	2.4	0	0	2.5	RNA.regulation of transcription.C2H2 zinc finger family	"AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2); nucleic acid binding / transcription factor/ zinc ion binding Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild dessication. The protein is localized to the nucleus"
MSGI1_28743	3421501	160.9	425.7	55.7	322.6	1.4	2.5	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_111283	50316582	47.9	28.9	18.1	42.3	0	1.2	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_26039	50316590	7.6	3.2	27.7	29.6	0	0	-1.9	-3.2	PS.lightreaction.photosystem II.PSII polypeptide subunits	photosystem II 5 kD protein  similar to PSBTN (photosystem II subunit T) [Arabidopsis thaliana] (TAIR:AT3G21055.1); similar to unknown [Brassica rapa] (GB:ABD91572.1)
MSGI1_18274	50316594	10.8	0.1	4.6	0	-6.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_34468	50316595	10.1	5.8	196.4	18.8	0	-3.4	-4.3	0	major CHO metabolism.degradation.starch.starch cleavage	"BMY7/TR-BAMY (beta-amylase 7); beta-amylase  similar to CT-BMY (BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to beta-amylase 1 [Nicotiana langsdorffii x Nicotiana sanderae] (GB:AAY89374.1); similar to putative chloropl"
MSGI1_17199	50316604	246.3	71	394.3	383.3	-1.8	0	0	-2.4	TCA / org. transformation.carbonic anhydrases	"CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding  Identical to Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase) (CA1) [Arabidopsis Thaliana] (GB:P27140;GB:Q8RWW2;GB:Q93VR8); similar to CA2 (BETA CARBONIC A"
MSGI1_16734	50316605	100.5	23.1	58.1	37.4	-2.1	0	0	0	misc.invertase/pectin methylesterase inhibitor family protein	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT3G47380.1); similar to putative ripening-related protein [Vitis vinife
MSGI1_16734	50316605	100.5	23.1	58.1	37.4	-2.1	0	0	0	cell wall	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT3G47380.1); similar to putative ripening-related protein [Vitis vinife
MSGI1_25955	50316623	5.9	5.8	25.7	5.8	0	-2.1	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_39905	50316628	76.1	23.2	38.5	26.8	-1.7	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_18078	50316644	0	0	403.3	495	0	0	-9.7	-10	not assigned.unknown	not assigned.unknown
MSGI1_18669	50316650	39.5	94.9	43.5	119.5	1.3	1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_17910	50316665	150.6	147.3	388	260.2	0	0	-1.4	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	"PSBR (photosystem II subunit R) Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gen"
MSGI1_24025	50316678	33.1	32.6	62.6	81.7	0	0	0	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_37521	50316691	35.4	19.9	85.3	13.7	0	-2.6	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_21657	50316695	1	4.8	14.9	30.5	0	0	-3.9	-2.7	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G38180.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE91665.1); contains InterPro domain Lipolytic en"
MSGI1_16581	50316698	3.9	12.4	37.2	8.4	0	-2.1	-3.3	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. simi"
MSGI1_16937	50316710	27.5	17.8	57.2	17	0	-1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_21243	50316736	0.6	0.1	13.9	0.7	0	-4.3	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_17859	50316745	124.1	1.5	21.2	2.4	-6.4	-3.1	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_19013	50316756	12.9	12.4	89.6	18.1	0	-2.3	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_19324	50316760	22.2	14.4	1.9	1.8	0	0	3.5	3	mitochondrial electron transport / ATP synthesis.cytochrome c oxidase	cytochrome c oxidase subunit Vc family protein / COX5C family protein  Identical to Probable cytochrome c oxidase polypeptide Vc-1 (EC 1.9.3.1) (Cytochrome c oxidase subunit 5c-1) [Arabidopsis Thaliana] (GB:O22912); similar to cytochrome-c oxidase [Arabid
MSGI1_17760	50316764	67.9	34.7	48.4	80.2	0	0	0	-1.2	PS.calvin cyle.rubisco interacting	"CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding / unfolded protein binding encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acqui"
MSGI1_19323	50316776	38.1	60.8	51.2	25.2	0	0	0	1.3	cell wall.precursor synthesis.GAE	"GAE1 (UDP-D-GLUCURONATE 4-EPIMERASE 1); UDP-glucuronate 4-epimerase/ catalytic UDP-D-glucuronate 4-epimerase similar to GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2), catalytic [Arabidopsis thaliana] (TAIR:AT1G02000.1); similar to UDP-glucuronic acid 4-epimeras"
MSGI1_18272	50316785	8	12.5	27.9	6.1	0	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_17908	50316789	15.3	1.1	8.2	1	-3.8	0	0	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT5G22810.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE90349.1); contains InterPro domain Lipolytic enzyme, G-D-S-L;"
MSGI1_17908	50316789	15.3	1.1	8.2	1	-3.8	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_26754	50316805	74.6	36.8	30.4	39.2	-1	0	1.3	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L29 (RPL29B)  Identical to 60S ribosomal protein L29-2 (RPL29B) [Arabidopsis Thaliana] (GB:Q84WM0;GB:Q9M7X5); similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G06700.3); similar to Ribosomal L29e protein
MSGI1_24173	50316837	1	1.1	14.2	8.8	0	0	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_17549	50316839	43.1	11.2	32	27.7	-1.9	0	0	0	lipid metabolism.lipid transfer proteins etc	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_17549	50316839	43.1	11.2	32	27.7	-1.9	0	0	0	cell wall	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_24407	50316852	21.8	5.2	27.5	3.5	-2.1	-3	0	0	stress.abiotic.cold	"COR413-PM1 (cold regulated 413 plasma membrane 1) encodes an alpha form of a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. similar to"
MSGI1_17305	50316859	38	15	11	11	0	0	1.8	0	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2AXb (HTA3) [Arabidopsis Thaliana] (GB:Q9S9K7); Identical to Probable histone H2AXa (HTA5) [Arabidopsis Thaliana] (GB:O04848;GB:Q8LAC0); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:A"
MSGI1_18344	50316892	8.7	17.7	207.4	50.1	0	-2	-4.6	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_17038	50316897	71.5	27.6	74.9	67.8	-1.4	0	0	-1.3	PS.lightreaction.other electron carrier (ox/red).ferredoxin	"FED A (FERREDOXIN 2); electron carrier/ iron ion binding encodes a ferredoxin gene Identical to Ferredoxin-1, chloroplast precursor (PETF1) [Arabidopsis Thaliana] (GB:P16972); similar to ATFD1 (FERREDOXIN 1), electron carrier/ iron ion binding [Arabidops"
MSGI1_16935	50316898	248.4	48.6	49.5	43.4	-2.4	0	2.3	0	cell wall	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT3G47380.1); similar to putative ripening-related protein [Vitis vinife
MSGI1_16935	50316898	248.4	48.6	49.5	43.4	-2.4	0	2.3	0	misc.invertase/pectin methylesterase inhibitor family protein	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT3G47380.1); similar to putative ripening-related protein [Vitis vinife
MSGI1_19412	50316900	0	0	477.1	637.1	0	0	-9.9	-10.3	not assigned.unknown	not assigned.unknown
MSGI1_17709	50316907	92.2	0.6	13.1	0.7	-7.3	-4.2	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_23142	50316910	17.3	45.8	42.6	27.5	1.4	0	0	0	stress.abiotic.touch/wounding	wound-responsive protein-related
MSGI1_18667	50316913	460.4	187	79.2	114.3	-1.3	0	2.5	0	stress.abiotic.unspecified	"SAH7 Encodes a protein, expressed in leaves, with similarity to pollen allergens. similar to pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] (TAIR:AT1G78040.2); similar to pollen-specific protein [Vitis pseudoreticulata] (GB:AB"
MSGI1_19269	50316928	14.6	0.4	4.3	0.3	-5.2	0	0	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	SHN3 (SHINE3); DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
MSGI1_17197	50316929	13.9	49.8	37.5	90.5	1.8	1.3	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_18206	50316933	2	4	27.9	4.3	0	-2.7	-3.8	0	cell wall.precursor synthesis.UGE	UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5); UDP-glucose 4-epimerase/ protein dimerization Encodes a protein with UDP-D-glucose 4-epimerase activity. Identical to Probable UDP-glucose 4-epimerase At4g10960 (EC 5.1.3.2) (Galactowaldenase) (UDP-gala
MSGI1_19320	50316945	125.7	2.8	27.8	1.8	-5.5	-3.9	2.2	0	stress.abiotic.unspecified	Bet v I allergen family protein  Identical to MLP-like protein 423 (MLP423) [Arabidopsis Thaliana] (GB:Q93VR4;GB:Q8L9L8;GB:Q9LR93); similar to MLP34 (MLP-LIKE PROTEIN 34) [Arabidopsis thaliana] (TAIR:AT1G70850.3); similar to Bet v I allergen [Medicago tru
MSGI1_19195	50316946	57.3	36.1	20	61.9	0	1.6	1.5	0	protein.synthesis.misc ribososomal protein	EMB2171 (EMBRYO DEFECTIVE 2171); structural constituent of ribosome  Identical to 60S ribosomal protein L23 (RPL23C) [Arabidopsis Thaliana] (GB:P49690;GB:Q8L8P0;GB:Q9SDB5); similar to 60S ribosomal protein L23 (RPL23A) [Arabidopsis thaliana] (TAIR:AT1G044
MSGI1_18205	50316955	25.3	0.2	13	0.2	-7	-6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_17707	50316960	72.4	85.9	24.2	81.4	0	1.8	1.6	0	protein.synthesis.elongation	elongation factor 1-alpha / EF-1-alpha  Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A) (A4) [Arabidopsis Thaliana] (GB:P13905); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar
MSGI1_18014	50316971	161.1	166.4	835.2	139	0	-2.6	-2.4	0	signalling.light	CCL (CCR-LIKE) transcripts are  differentially regulated at the level of mRNA stability at different times of day controlled by the circadian clock. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant
MSGI1_18343	50316988	129.3	76.9	43.1	113	0	1.4	1.6	0	glycolysis.enolase	LOS2 (Low expression of osmotically responsive genes 1); phosphopyruvate hydratase Involved in light-dependent cold tolerance and encodes an enolase. Identical to Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase) (2-phospho-D- glycerate hydro-lyase)
MSGI1_19319	50316992	25.1	78	73.6	167.9	1.6	1.2	-1.6	-1.1	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_18204	50316996	82	112.2	235.4	178.1	0	0	-1.5	0	amino acid metabolism.synthesis.central amino acid metabolism.alanine.alanine-glyoxylate aminotransferase	AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE) Encodes a peroxisomal photorespiratory enzyme that catalyzes transamination reactions with multiple substrates. It is involved in photorespiration. Identical to Serine--glyoxylate aminotransferase (EC 2.6.1.45) (
MSGI1_18204	50316996	82	112.2	235.4	178.1	0	0	-1.5	0	PS.aminotransferases peroxisomal	AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE) Encodes a peroxisomal photorespiratory enzyme that catalyzes transamination reactions with multiple substrates. It is involved in photorespiration. Identical to Serine--glyoxylate aminotransferase (EC 2.6.1.45) (
MSGI1_18203	50317010	12.1	45.5	13.6	35.2	1.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_18936	50317012	5.3	5.1	31.4	3.3	0	-3.3	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_18865	50317019	46	25.7	17.6	28.3	0	0	1.4	0	mitochondrial electron transport / ATP synthesis.cytochrome c reductase	"ubiquinol-cytochrome C reductase complex 14 kDa protein, putative  similar to ubiquinol-cytochrome C reductase complex 14 kDa protein, putative [Arabidopsis thaliana] (TAIR:AT4G32470.1); similar to Ubiquinol-cytochrome c reductase complex 14 kDa protein"
MSGI1_18342	50317021	9.5	3.5	35.2	2.8	0	-3.7	-1.9	0	stress.abiotic.cold	RCI2B (RARE-COLD-INDUCIBLE 2B)  Identical to Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B) (RCI2B) [Arabidopsis Thaliana] (GB:Q9ZNS6;GB:Q9M9K9); similar to RCI2A (RARE-COLD-INDUCIBLE 2A) [Arabidopsis thaliana] (TAIR:AT3G05
MSGI1_18342	50317021	9.5	3.5	35.2	2.8	0	-3.7	-1.9	0	stress.abiotic.drought/salt	RCI2B (RARE-COLD-INDUCIBLE 2B)  Identical to Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B) (RCI2B) [Arabidopsis Thaliana] (GB:Q9ZNS6;GB:Q9M9K9); similar to RCI2A (RARE-COLD-INDUCIBLE 2A) [Arabidopsis thaliana] (TAIR:AT3G05
MSGI1_22011	50317028	0.6	5.6	15.9	6.1	0	0	-4.7	0	cell wall.degradation	peptidoglycan-binding LysM domain-containing protein  similar to peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G25433.1); similar to Os10g0524300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065106.1); similar
MSGI1_17494	50317038	56.1	13.9	40.4	33.9	-2	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_17494	50317038	56.1	13.9	40.4	33.9	-2	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_18547	50317039	0	0	631.6	904.9	0	0	-10.3	-10.8	not assigned.unknown	not assigned.unknown
MSGI1_19411	50317041	323.3	69.5	49.2	53.2	-2.2	0	2.7	0	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_22357	50317045	128.7	60.5	31.9	63.4	-1.1	1	2	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S17 (RPS17D)  Identical to 40S ribosomal protein S17-2 (RPS17B) [Arabidopsis Thaliana] (GB:Q9SJ36;GB:Q94K44); Identical to 40S ribosomal protein S17-4 (RPS17D) [Arabidopsis Thaliana] (GB:Q9LZ17;GB:Q8LAE8); similar to 40S ribosomal pr
MSGI1_18201	50317056	7.4	6.5	42.3	6.5	0	-2.7	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_82597	50317079	3.1	9.6	22	8.5	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_17813	50317080	52.1	9.4	5.5	3.4	-2.5	0	3.2	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_17813	50317080	52.1	9.4	5.5	3.4	-2.5	0	3.2	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_17907	50317086	218.9	147.4	571.9	200.4	0	-1.5	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_17906	50317104	72.7	54.4	26.6	56.3	0	1.1	1.5	0	transport.p- and v-ATPases.H+-transporting two-sector ATPase	"AVA-P1 (vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 1); ATPase/ hydrogen ion transporting ATPase, rotational mechanism vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p1) Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 4 (EC 3."
MSGI1_19454	50317105	405.2	214.2	201.6	247.6	0	0	1	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	PSBX (photosystem II subunit X) Encodes a protein with sequence similarity to the spinach photosystem II subunit PsbX. similar to ultraviolet-B-repressible protein [Gossypium hirsutum] (GB:AAS58469.1); contains InterPro domain Photosystem II protein PsbX;
MSGI1_18473	50317114	92.5	22.4	10.6	11.2	-2	0	3.1	0	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_18935	50317115	32.3	0.6	16.5	0.3	-5.8	-5.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_17645	50317118	1.9	3.9	31.8	10.8	0	0	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_17905	50317126	0	0	225.6	373.9	0	0	-8.8	-9.5	not assigned.unknown	not assigned.unknown
MSGI1_18934	50317143	43.2	26.1	17.9	26.7	0	0	1.3	0	PS.lightreaction.photosystem I.PSI polypeptide subunits	"PSAL (photosystem I subunit L) Encodes subunit L of photosystem I reaction center. Identical to Photosystem I reaction center subunit XI, chloroplast precursor (PSI- L) (PSI subunit V) (PSAL) [Arabidopsis Thaliana] (GB:Q9SUI4;GB:Q9ST32;GB:Q9SU06); simila"
MSGI1_23412	50317151	1.1	0.7	63.8	0.3	0	-7.7	-5.9	0	not assigned.unknown	not assigned.unknown
MSGI1_31337	50317161	0	0	17.5	13.7	0	0	-5.1	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_25954	50317172	103.4	59.1	8.9	19.7	0	0	3.5	1.6	protein.synthesis.misc ribososomal protein	"60s acidic ribosomal protein P1, putative  similar to 60S acidic ribosomal protein P1 (RPP1B) [Arabidopsis thaliana] (TAIR:AT4G00810.2); similar to ribosomal protein P1 [Triticum aestivum] (GB:AAW50990.1); contains InterPro domain Ribosomal protein 60S;"
MSGI1_22078	50317202	113.9	64.5	41.9	79.7	0	0	1.4	0	protein.synthesis.misc ribososomal protein	ATRPS5B (RIBOSOMAL PROTEIN 5B); structural constituent of ribosome One of two genes encoding the ribosomal protein S5. Expressed at a lower level compared to ATRPS5A. Identical to 40S ribosomal protein S5-1 (RPS5A) [Arabidopsis Thaliana] (GB:Q9ZUT9;GB:Q8
MSGI1_18665	50317205	21.7	33.9	64.3	44	0	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_18664	50317208	30.7	1.6	12.7	1.4	-4.3	0	0	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT5G22810.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE90349.1); contains InterPro domain Lipolytic enzyme, G-D-S-L;"
MSGI1_18664	50317208	30.7	1.6	12.7	1.4	-4.3	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_18862	50317223	5.2	3.3	21.7	4.2	0	-2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_19318	50317254	140.9	171.3	266.6	81.3	0	-1.7	0	1.1	stress.abiotic.drought/salt	similar to nodulin-related [Arabidopsis thaliana] (TAIR:AT2G03440.1); similar to drought-induced protein SDi-6 - common sunflower (fragment) (GB:S71562)
MSGI1_19318	50317254	140.9	171.3	266.6	81.3	0	-1.7	0	1.1	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_18663	50317269	28.2	1.3	14.8	1.6	-4.4	-3.2	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_18663	50317269	28.2	1.3	14.8	1.6	-4.4	-3.2	0	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT5G22810.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE90349.1); contains InterPro domain Lipolytic enzyme, G-D-S-L;"
MSGI1_18663	50317269	28.2	1.3	14.8	1.6	-4.4	-3.2	0	0	cell wall	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT5G22810.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE90349.1); contains InterPro domain Lipolytic enzyme, G-D-S-L;"
MSGI1_22977	50317273	485.6	570.2	213.9	377.3	0	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_21799	50317278	100.8	11.4	79.4	48.1	-3.1	0	0	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_19194	50317280	37.6	7.2	25.6	12.6	-2.4	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_19194	50317280	37.6	7.2	25.6	12.6	-2.4	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_19193	50317281	77.2	29.4	50.7	73.4	-1.4	0	0	-1.3	stress.abiotic.unspecified	"SAH7 Encodes a protein, expressed in leaves, with similarity to pollen allergens. similar to pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] (TAIR:AT1G78040.2); similar to pollen-specific protein [Vitis pseudoreticulata] (GB:AB"
MSGI1_19267	50317285	2.1	0.4	18.3	2.8	0	-2.7	-3.1	0	misc.glutathione S transferases	"ATGSTU19 (GLUTATHIONE TRANSFERASE 8); glutathione transferase Encodes a glutathione transferase that is a member of Tau GST gene family. Expression is induced by drought stress, oxidative stress, and high doses of auxin and cytokinin. naming convention a"
MSGI1_18603	50317296	11	35.5	25.8	7.6	1.7	0	0	2.2	hormone metabolism.ethylene.signal transduction	ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6); DNA binding / transcription factor Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There ar
MSGI1_18603	50317296	11	35.5	25.8	7.6	1.7	0	0	2.2	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6); DNA binding / transcription factor Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There ar
MSGI1_19266	50317320	29.7	33.9	597.3	166.3	0	-1.8	-4.3	-2.3	stress.abiotic.drought/salt	similar to nodulin-related [Arabidopsis thaliana] (TAIR:AT2G03440.1); similar to drought-induced protein SDi-6 - common sunflower (fragment) (GB:S71562)
MSGI1_19266	50317320	29.7	33.9	597.3	166.3	0	-1.8	-4.3	-2.3	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_18471	50317329	115.4	129.7	433.4	93.6	0	-2.2	-1.9	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_18471	50317329	115.4	129.7	433.4	93.6	0	-2.2	-1.9	0	stress.abiotic.drought/salt	similar to nodulin-related [Arabidopsis thaliana] (TAIR:AT2G03440.1); similar to drought-induced protein SDi-6 - common sunflower (fragment) (GB:S71562)
MSGI1_21869	50317330	37.5	11.6	9	10.2	-1.7	0	2.1	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L38 (RPL38B)  Identical to 60S ribosomal protein L38 (RPL38B) [Arabidopsis Thaliana] (GB:O22860;GB:Q1WW90); similar to 60S ribosomal protein L38 (RPL38A) [Arabidopsis thaliana] (TAIR:AT2G43460.1); similar to Ribosomal L38e protein [M
MSGI1_17643	50317336	0	0	73.1	21.2	0	-1.8	-7.2	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_17904	50317342	17.3	0.1	11	0	-7.4	-4.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_21454	50317377	89.2	118.8	237.2	45.5	0	-2.4	-1.4	1.4	not assigned.unknown	not assigned.unknown
MSGI1_18264	50317379	24.7	0.4	14.1	0.2	-5.9	-6.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_18789	50317383	27.3	19	87.9	9.3	0	-3.2	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_19192	50317406	124	68.9	39.5	61.6	0	0	1.7	0	cell wall	"calreticulin 2 (CRT2)  Identical to Calreticulin-2 precursor (CRT2) [Arabidopsis Thaliana] (GB:Q38858;GB:O04152;GB:O80486); similar to CRT1 (CALRETICULIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT1G56340.1); similar to calreticulin-1 [Glycin"
MSGI1_19192	50317406	124	68.9	39.5	61.6	0	0	1.7	0	signalling.calcium	"calreticulin 2 (CRT2)  Identical to Calreticulin-2 precursor (CRT2) [Arabidopsis Thaliana] (GB:Q38858;GB:O04152;GB:O80486); similar to CRT1 (CALRETICULIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT1G56340.1); similar to calreticulin-1 [Glycin"
MSGI1_18469	50317430	68.7	17.7	53.9	63.9	-2	0	0	-1.9	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_18138	50317431	157.1	26.2	48.4	34.2	-2.6	0	1.7	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_18138	50317431	157.1	26.2	48.4	34.2	-2.6	0	1.7	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_18546	50317441	84.1	197	30.7	26	1.2	0	1.5	2.9	stress.abiotic.touch/wounding	wound-responsive protein-related  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G01740.1); similar to wound-induced protein WI12 [Mesembryanthemum crystallinum] (GB:AAD23999.1); contains InterPro domain Wound-induced WI12; (InterPro:IPR009798
MSGI1_17755	50317451	24.5	0.1	6.5	0.1	-7.9	0	1.9	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_17755	50317451	24.5	0.1	6.5	0.1	-7.9	0	1.9	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to ATLTL1/LTL1 (LI-TOLERANT LIPASE 1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT3G04290.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipo"
MSGI1_18263	50317456	29	54.9	3.7	1	0	0	3	5.8	not assigned.unknown	not assigned.unknown
MSGI1_18660	50317489	54.7	29.6	231.9	31.6	0	-2.9	-2.1	0	redox.ascorbate and glutathione.glutathione	"ATGPX6 (GLUTATHIONE PEROXIDASE 6); glutathione peroxidase Encodes glutathione peroxidase. Identical to Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial precursor (EC 1.11.1.12) (PHGPx) (AtGPX1) (GPX6) [Arabidopsis Thaliana] (GB"
MSGI1_17391	50317494	37.3	21.9	212.5	19.9	0	-3.4	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_17903	50317495	45.7	36.8	69.3	14.7	0	-2.2	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_17702	50317502	729.9	282.3	343.5	550.2	-1.4	0	1.1	0	PS.lightreaction.other electron carrier (ox/red).plastocyanin	"DRT112 (DNA-damage-repair/toleration protein 112); copper ion binding / electron carrier recombination and DNA-damage resistance protein (DRT112) Identical to Plastocyanin major isoform, chloroplast precursor (DNA-damage- repair/toleration protein DRT112"
MSGI1_23358	50317525	16.2	7.1	0.9	0.8	0	0	4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_68559	50317526	0.3	0	31	4.5	0	-2.8	-6.7	0	not assigned.unknown	not assigned.unknown
MSGI1_18261	50317538	15.2	20.7	48.6	23.4	0	0	-1.7	0	stress.abiotic.drought/salt	RD22 (RESPONSIVE TO DESSICATION 22) responsive to dehydration 22 (RD22) mediated by ABA Identical to Dehydration-responsive protein RD22 precursor (RD22) [Arabidopsis Thaliana] (GB:Q08298); similar to BURP domain-containing protein [Arabidopsis thaliana]
MSGI1_18410	50317553	12.6	0.2	8.2	0	-6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_18602	50317574	4.7	7.1	146	106.6	0	0	-5	-3.9	stress.abiotic.drought/salt	RD22 (RESPONSIVE TO DESSICATION 22) responsive to dehydration 22 (RD22) mediated by ABA Identical to Dehydration-responsive protein RD22 precursor (RD22) [Arabidopsis Thaliana] (GB:Q08298); similar to BURP domain-containing protein [Arabidopsis thaliana]
MSGI1_21042	50317586	23.4	45.5	155.7	19.9	0	-3	-2.7	0	stress.abiotic.heat	"J8; heat shock protein binding / unfolded protein binding J8 mRNA, nuclear gene encoding plastid protein, complete Identical to Chaperone protein dnaJ 8, chloroplast precursor (AtJ8) (AtDjC8) (ATJ8) [Arabidopsis Thaliana] (GB:Q9SAG8;GB:Q9ZSN1); similar t"
MSGI1_20912	50317588	13.7	9.9	31.5	8.7	0	-1.9	0	0	lipid metabolism.lipid degradation.lysophospholipases.phosphoinositide phospholipase C	"ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phosp"
MSGI1_20912	50317588	13.7	9.9	31.5	8.7	0	-1.9	0	0	signalling.phosphinositides.phosphoinositide phospholipase C	"ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phosp"
MSGI1_32597	50317602	111.7	39	31.2	48.2	-1.5	0	1.8	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L39 (RPL39C)  Identical to 60S ribosomal protein L39-1 (RPL39C) [Arabidopsis Thaliana] (GB:P51424;GB:Q541X1;GB:Q93VI7;GB:Q9SIS1); similar to 60S ribosomal protein L39 (RPL39B) [Arabidopsis thaliana] (TAIR:AT3G02190.1); similar to put
MSGI1_18545	50317603	18.8	0.3	8.4	0.1	-6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_18197	50317607	36.6	48	74.5	124.9	0	0	0	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_21654	50317617	59.4	94.4	428.4	75.3	0	-2.5	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_19128	50317621	47.7	33.2	3.8	6.5	0	0	3.6	2.4	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_19128	50317621	47.7	33.2	3.8	6.5	0	0	3.6	2.4	misc.plastocyanin-like	plastocyanin-like domain-containing protein  similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G07475.1); similar to blue copper-binding protein homolog [Triticum aestivum] (GB:AAD10251.1); contains InterPro domain Cup
MSGI1_18137	50317622	26.9	1.6	8.7	1.1	-4.1	0	0	0	cell wall	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT5G22810.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE90349.1); contains InterPro domain Lipolytic enzyme, G-D-S-L;"
MSGI1_18137	50317622	26.9	1.6	8.7	1.1	-4.1	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_18137	50317622	26.9	1.6	8.7	1.1	-4.1	0	0	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT5G22810.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE90349.1); contains InterPro domain Lipolytic enzyme, G-D-S-L;"
MSGI1_18336	50317629	21.4	0.1	8.7	0.2	-7.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_116651	50317636	99.9	2.9	33.6	3	-5.1	-3.5	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_18468	50317642	37.9	15.3	7.7	15.1	0	0	2.3	0	mitochondrial electron transport / ATP synthesis.cytochrome c oxidase	"cytochrome c oxidase family protein  similar to cytochrome c oxidase family protein [Arabidopsis thaliana] (TAIR:AT3G15640.1); similar to cytochrome c oxidase subunit Vb [Pisum sativum] (GB:BAF30483.1); contains InterPro domain Cytochrome c oxidase, subu"
MSGI1_21453	50317645	252.9	139.4	99.5	106.4	0	0	1.3	0	cell.organisation	"TUB6 (BETA-6 TUBULIN) Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment. Identical to Tubulin beta-6 chain (Beta-6 tubulin) (TUBB6) [Arabidopsis Thaliana] (GB:P29514); similar to TUB3 (Tubulin beta-3), st"
MSGI1_21453	50317645	252.9	139.4	99.5	106.4	0	0	1.3	0	cell wall	"TUB6 (BETA-6 TUBULIN) Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment. Identical to Tubulin beta-6 chain (Beta-6 tubulin) (TUBB6) [Arabidopsis Thaliana] (GB:P29514); similar to TUB3 (Tubulin beta-3), st"
MSGI1_19317	50317648	6.4	5.5	25.4	9.3	0	0	-2	0	redox.ascorbate and glutathione	"ACYB-2 (Arabidopsis cytochrome b561 -2); carbon-monoxide oxygenase Encodes cytochrome b561. similar to ACYB-1 (Arabidopsis cytochrome b561 -1), carbon-monoxide oxygenase [Arabidopsis thaliana] (TAIR:AT5G38630.1); similar to cytochrome b561 [Citrullus lan"
MSGI1_24647	50317660	10.1	12.9	145.3	91.2	0	0	-3.8	-2.8	not assigned.unknown	not assigned.unknown
MSGI1_18196	50317665	20.2	74.6	60.8	181.6	1.9	1.6	-1.6	-1.3	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_18657	50317671	36	153.2	105	75.7	2.1	0	-1.5	1	RNA.regulation of transcription.C3H zinc finger family	CZF1/ZFAR1; transcription factor  similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G55980.1); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR0021
MSGI1_18072	50317708	63	80.7	194.8	82.3	0	-1.2	-1.6	0	"metal handling.binding, chelation and storage"	"ATFER2 (FERRITIN 2); ferric iron binding  Identical to Ferritin-2, chloroplast precursor (EC 1.16.3.1) (FER2) [Arabidopsis Thaliana] (GB:Q9SRL5;GB:Q42288;GB:Q8L9N6;GB:Q8WHW4); similar to ATFER4 (FERRITIN 4), ferric iron binding [Arabidopsis thaliana] (TA"
MSGI1_33467	50317724	444.2	386.8	252.2	702.3	0	1.5	0	0	RNA.RNA binding	"ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circa"
MSGI1_111034	50317732	7.8	44	10.9	12.3	2.5	0	0	1.8	protein.degradation.ubiquitin.E2	"PHO2/UBC24 (PHOSPHATE 2); ubiquitin-protein ligase Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. similar to UBC23 (ubiquitin-conjugating enzyme"
MSGI1_28542	50317738	7.9	2.7	22.9	4	0	-2.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_18544	50317739	33.7	1	4.8	1	-5.1	0	2.8	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_18544	50317739	33.7	1	4.8	1	-5.1	0	2.8	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G29670.1); similar to GDSL-lipase 1 [Capsicum annuum] (GB:AAZ23955.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; ("
MSGI1_28816	50317745	58.3	87.7	42.7	35.4	0	0	0	1.3	redox.ascorbate and glutathione	B5 #4 (cytochrome b5 family protein #4); heme binding / transition metal ion binding member of Cytochromes b5 Identical to Probable cytochrome b5 isoform 2 [Arabidopsis Thaliana] (GB:O48845); similar to ATB5-B (Cytochrome b5 B) [Arabidopsis thaliana] (TAI
MSGI1_19126	50317753	0.1	0.1	36.8	31.9	0	0	-8.5	-8.3	not assigned.unknown	not assigned.unknown
MSGI1_18861	50317774	2	0.6	683.2	6.7	0	-6.7	-8.4	0	not assigned.unknown	not assigned.unknown
MSGI1_21728	50317775	1.5	0.3	23.5	1.8	0	-3.7	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_18783	50317802	34.2	90.1	62.4	95.2	1.4	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_18783	50317802	34.2	90.1	62.4	95.2	1.4	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_18260	50317816	2.7	4.4	19	38.4	0	0	-2.8	-3.1	not assigned.unknown	not assigned.unknown
MSGI1_17857	50317824	125	65	61.3	80.4	0	0	1	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S23 (RPS23B)  Identical to 40S ribosomal protein S23-2 (S12) (RPS23B) [Arabidopsis Thaliana] (GB:P49201;GB:Q9LYY9); similar to 40S ribosomal protein S23 (RPS23A) [Arabidopsis thaliana] (TAIR:AT3G09680.1); similar to Ribosomal protei
MSGI1_24804	50317825	59.5	21.6	16.3	22	-1.5	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_22597	50317829	35.8	12.9	30.6	37.8	-1.5	0	0	-1.6	PS.calvin cyle.phosphoglycerate kinase	"phosphoglycerate kinase, putative  similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2); similar to PGK1 (PHOSPHOGLYCERATE KINASE 1), phosphoglycerate kinase [Arabidopsis thaliana] (TAIR:AT3G12780.1); similar to chloroplast"
MSGI1_21934	50317832	93.2	60.9	29.9	78.2	0	1.4	1.6	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S29 (RPS29C)  Identical to 40S ribosomal protein S29 (RPS29C) [Arabidopsis Thaliana] (GB:Q680P8;GB:Q9LDT9); similar to 40S ribosomal protein S29 (RPS29B) [Arabidopsis thaliana] (TAIR:AT3G44010.1); similar to 40S ribosomal protein S29
MSGI1_19883	50317840	382.1	439.4	1274.1	1961.1	0	0	-1.7	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_18778	50317847	39.2	41.1	210.2	61.6	0	-1.8	-2.4	0	stress.abiotic.drought/salt	similar to nodulin-related [Arabidopsis thaliana] (TAIR:AT2G03440.1); similar to drought-induced protein SDi-6 - common sunflower (fragment) (GB:S71562)
MSGI1_18778	50317847	39.2	41.1	210.2	61.6	0	-1.8	-2.4	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_19260	50317860	26.5	4.6	22	12.5	-2.5	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_19260	50317860	26.5	4.6	22	12.5	-2.5	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_19314	50317865	38.6	57	144.4	31.2	0	-2.2	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_17345	50317876	52.2	62.3	130.1	55	0	-1.2	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_21933	50317897	75.6	43.9	32.5	40.5	0	0	1.2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L31 (RPL31C)  Identical to 60S ribosomal protein L31-3 (RPL31C) [Arabidopsis Thaliana] (GB:P51420;GB:Q8LEJ0;GB:Q9FJU1); similar to 60S ribosomal protein L31 (RPL31B) [Arabidopsis thaliana] (TAIR:AT4G26230.1); similar to 60S ribosomal
MSGI1_20910	50317903	102.4	47.5	51.2	47.1	-1.1	0	1	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S25 (RPS25B)  Identical to 40S ribosomal protein S25-2 (RPS25B) [Arabidopsis Thaliana] (GB:Q9SIK2); similar to 40S ribosomal protein S25 (RPS25E) [Arabidopsis thaliana] (TAIR:AT4G39200.1); similar to S25 ribosomal protein [Medicago t
MSGI1_17037	50317913	56.8	43.8	133.2	34.8	0	-1.9	-1.2	0	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19180.1); similar to PnFL-2 [Ipomoea nil] (GB:AAG49896.1); contains InterPro domain ZIM; (InterPro:IPR010399)
MSGI1_18599	50317933	26.9	65.5	36.6	104.8	1.3	1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_19403	50317934	69.2	33.7	48.6	28.8	-1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_22521	50317948	3.8	16	67.1	7	0	-3.3	-4.1	0	protein.postranslational modification	"protein phosphatase 2C, putative / PP2C, putative  similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G30020.1); similar to protein phosphatase 2C [Medicago sativa] (GB:CAA72341.1); contains InterPro domain Prote"
MSGI1_17961	50317957	38	42.8	125	21.7	0	-2.5	-1.7	0	signalling.calcium	"MSS3 (MULTICOPY SUPPRESSORS OF SNF4 DEFICIENCY IN YEAST 3); calcium ion binding Encodes calmodulin-like MSS3. similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G59440.1); similar to calcium-binding protein [Lotus japonicus] (GB"
MSGI1_18070	50317959	13.4	0.1	6.2	0.2	-7.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_18193	50317960	104.1	61.9	40	77	0	0.9	1.4	0	protein.synthesis.misc ribososomal protein	"60s acidic ribosomal protein P1, putative  similar to 60S acidic ribosomal protein P1 (RPP1B) [Arabidopsis thaliana] (TAIR:AT4G00810.2); similar to ribosomal protein P1 [Triticum aestivum] (GB:AAW50990.1); contains InterPro domain Ribosomal protein 60S;"
MSGI1_18134	50317964	16.9	11.6	2.6	4	0	0	2.7	0	signalling.misc	"RALFL33 (RALF-LIKE 33) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single e"
MSGI1_18134	50317964	16.9	11.6	2.6	4	0	0	2.7	0	cell wall	"RALFL33 (RALF-LIKE 33) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single e"
MSGI1_17811	50317968	15.3	0.1	12.4	0.2	-7.3	-6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_18406	50317983	14.8	0.1	9	0.1	-7.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_17699	50317990	38.1	50.6	98.5	43.8	0	-1.2	-1.4	0	protein.degradation.autophagy	"ATG8C (AUTOPHAGY 8C); microtubule binding  similar to ATG8D (autophagy gene 8-related), microtubule binding [Arabidopsis thaliana] (TAIR:AT2G05630.1); similar to microtubule-associated protein 1 light chain 3 [Gossypium hirsutum] (GB:AAQ76706.1); similar"
MSGI1_18405	50317997	29.8	6.5	23.8	14.5	-2.2	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_18405	50317997	29.8	6.5	23.8	14.5	-2.2	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_21727	50317999	10.8	11.9	42.9	15.6	0	-1.5	-2	0	protein.synthesis.release	"ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1); translation release factor Encodes a eukaryotic release factor 1 homolog.  Cosuppression of the gene's expression results affects cell elongation of the inflorescence stem, specifically the internodes, and radial c"
MSGI1_19402	50318002	0.1	0	530.5	804.3	0	0	-12.4	-10.7	not assigned.unknown	not assigned.unknown
MSGI1_18597	50318015	24.9	63.8	170.3	170.7	1.4	0	-2.8	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_17492	50318033	3.3	4.3	161.4	143.9	0	0	-5.6	-5.1	stress.abiotic.drought/salt	RD22 (RESPONSIVE TO DESSICATION 22) responsive to dehydration 22 (RD22) mediated by ABA Identical to Dehydration-responsive protein RD22 precursor (RD22) [Arabidopsis Thaliana] (GB:Q08298); similar to BURP domain-containing protein [Arabidopsis thaliana]
MSGI1_19185	50318059	1.6	1.7	30.4	4.4	0	-2.8	-4.2	0	stress.abiotic.drought/salt	similar to nodulin-related [Arabidopsis thaliana] (TAIR:AT2G03440.1); similar to drought-induced protein SDi-6 - common sunflower (fragment) (GB:S71562)
MSGI1_19185	50318059	1.6	1.7	30.4	4.4	0	-2.8	-4.2	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_22664	50318073	1.6	0.4	20.9	12.5	0	0	-3.7	-5	not assigned.unknown	not assigned.unknown
MSGI1_38993	50318074	58.3	45.6	15.7	30.7	0	0	1.9	0	stress.biotic	CHAT (ACETYL COA:(Z)-3-HEXEN-1-OL ACETYLTRANSFERASE); acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase  similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G17540.1); similar to benzoyl coenzyme A: benzyl alcohol benzoyl transferase [Petuni
MSGI1_19063	50318076	57.1	10.6	36.2	23.6	-2.4	0	0	0	misc.invertase/pectin methylesterase inhibitor family protein	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT3G47380.1); similar to putative ripening-related protein [Vitis vinife
MSGI1_19063	50318076	57.1	10.6	36.2	23.6	-2.4	0	0	0	cell wall	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT3G47380.1); similar to putative ripening-related protein [Vitis vinife
MSGI1_18329	50318079	107.2	37.5	48.7	136.2	-1.5	1.5	1.1	-1.9	cell wall.modification	"ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thali"
MSGI1_23975	50318095	2.3	19.9	100.5	256.2	3.1	1.4	-5.4	-3.7	not assigned.unknown	not assigned.unknown
MSGI1_19005	50318108	53.7	83.2	26.1	25.9	0	0	0	1.7	not assigned.unknown	not assigned.unknown
MSGI1_21179	50318124	6	32.2	25.4	4.4	2.4	-2.5	-2.1	2.9	stress.biotic	immediate-early fungal elicitor family protein  similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G37490.1); similar to immediate-early fungal elicitor protein CMPG1 [Petroselinum crispum] (GB:AAK69401.1); contains InterPro domain
MSGI1_17697	50318130	4.1	2.5	38	4.1	0	-3.2	-3.2	0	development.late embryogenesis abundant	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication. Identical to Putative desiccation-related prot
MSGI1_21578	50318137	19.9	18	1619.9	247.7	0	-2.7	-6.3	-3.8	not assigned.unknown	not assigned.unknown
MSGI1_18596	50318139	2.7	2.1	18.9	3.9	0	0	-2.8	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"AP2 domain-containing transcription factor, putative  similar to RAV1 (Related to ABI3/VP1 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G13260.1); similar to DNA binding protein Rav [Capsicum annuum] (GB:AAQ05799.1); contains In"
MSGI1_22520	50318156	11.9	13.8	0.6	0.9	0	0	4.3	3.9	not assigned.unknown	not assigned.unknown
MSGI1_22210	50318178	81.8	42.5	36.2	32.4	0	0	1.2	0	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2A.4 (HTA12) [Arabidopsis Thaliana] (GB:Q9LZ46); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT5G59870.1); similar to Histone H2A (GB:Q9M531); contains InterPro domain Histone-fold;"
MSGI1_18721	50318182	25.2	116.2	74.9	12.9	2.2	-2.5	-1.6	3.2	not assigned.unknown	not assigned.unknown
MSGI1_22287	50318197	6.9	12.2	21.4	1.3	0	-4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_18595	50318204	11.9	0.8	9.1	0.8	-3.9	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_18595	50318204	11.9	0.8	9.1	0.8	-3.9	0	0	0	cell wall	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT5G22810.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE90349.1); contains InterPro domain Lipolytic enzyme, G-D-S-L;"
MSGI1_18595	50318204	11.9	0.8	9.1	0.8	-3.9	0	0	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT5G22810.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE90349.1); contains InterPro domain Lipolytic enzyme, G-D-S-L;"
MSGI1_18540	50318210	62.7	65.6	230.9	57.5	0	-2	-1.9	0	stress.abiotic.drought/salt	similar to nodulin-related [Arabidopsis thaliana] (TAIR:AT2G03440.1); similar to drought-induced protein SDi-6 - common sunflower (fragment) (GB:S71562)
MSGI1_18540	50318210	62.7	65.6	230.9	57.5	0	-2	-1.9	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_19254	50318219	24.9	6.1	22.1	16.5	-2	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_19254	50318219	24.9	6.1	22.1	16.5	-2	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_24803	50318239	103.8	58.4	44.7	86.3	0	0.9	1.2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L32 (RPL32A)  Identical to 60S ribosomal protein L32-1 (RPL32A) [Arabidopsis Thaliana] (GB:P49211;GB:Q8LC86;GB:Q9SVW1); similar to 60S ribosomal protein L32 (RPL32B) [Arabidopsis thaliana] (TAIR:AT5G46430.2); similar to ly200 protein
MSGI1_27606	50318294	10.1	19.3	5.5	1.3	0	0	0	3.9	not assigned.unknown	not assigned.unknown
MSGI1_111282	50318308	0	0	17	21.4	0	0	-5.1	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_19398	50318309	21.4	0.2	3.9	0	-6.7	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_18594	50318315	154.6	32.5	104.5	169.2	-2.3	0	0	-2.4	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_18190	50318320	29.8	42.1	70.2	103.5	0	0	-1.2	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_19004	50318351	84.5	15.2	58.7	23.9	-2.5	-1.3	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_19004	50318351	84.5	15.2	58.7	23.9	-2.5	-1.3	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_18402	50318352	31.8	0.4	20.3	0.3	-6.3	-6.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_17389	50318356	4.8	12.6	27.3	1.3	0	-4.4	-2.5	0	stress	STZ (SALT TOLERANCE ZINC FINGER); nucleic acid binding / transcription factor/ zinc ion binding Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by
MSGI1_17389	50318356	4.8	12.6	27.3	1.3	0	-4.4	-2.5	0	RNA.regulation of transcription.C2H2 zinc finger family	STZ (SALT TOLERANCE ZINC FINGER); nucleic acid binding / transcription factor/ zinc ion binding Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by
MSGI1_18069	50318360	18.9	0.2	9.8	0.2	-6.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_22285	50318361	223.5	86.1	43.2	95	-1.4	1.1	2.4	0	protein.synthesis.misc ribososomal protein	60S acidic ribosomal protein P2 (RPP2B)  Identical to 60S acidic ribosomal protein P2-2 (RPP2B) [Arabidopsis Thaliana] (GB:Q9SLF7;GB:Q8LB03); similar to 60S acidic ribosomal protein P2 (RPP2A) [Arabidopsis thaliana] (TAIR:AT2G27720.1); similar to 60s acid
MSGI1_115464	50318372	7.7	16.5	0.3	0	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_18462	50318380	8.8	11	38.1	5.5	0	-2.8	-2.1	0	hormone metabolism.ethylene.signal transduction	ATERF-9/ATERF9/ERF9 (ERF domain protein 9); DNA binding / transcription factor/ transcriptional repressor encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2
MSGI1_18462	50318380	8.8	11	38.1	5.5	0	-2.8	-2.1	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	ATERF-9/ATERF9/ERF9 (ERF domain protein 9); DNA binding / transcription factor/ transcriptional repressor encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2
MSGI1_19394	50318388	16.1	25.7	63.9	60.9	0	0	-2	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_18770	50318432	58.3	72.8	117.7	48.4	0	-1.3	0	0	stress.abiotic.drought/salt	RD22 (RESPONSIVE TO DESSICATION 22) responsive to dehydration 22 (RD22) mediated by ABA Identical to Dehydration-responsive protein RD22 precursor (RD22) [Arabidopsis Thaliana] (GB:Q08298); similar to BURP domain-containing protein [Arabidopsis thaliana]
MSGI1_19182	50318457	0	0	1113.6	971.9	0	0	-11.1	-10.9	not assigned.unknown	not assigned.unknown
MSGI1_17642	50318473	16.3	18.6	9.3	1.1	0	0	0	4.1	stress.abiotic.drought/salt	similar to nodulin-related [Arabidopsis thaliana] (TAIR:AT2G03440.1); similar to drought-induced protein SDi-6 - common sunflower (fragment) (GB:S71562)
MSGI1_17642	50318473	16.3	18.6	9.3	1.1	0	0	0	4.1	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_17088	50318484	15.5	38	59.8	81.6	0	0	-1.9	-1.1	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_17088	50318484	15.5	38	59.8	81.6	0	0	-1.9	-1.1	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_17899	50318491	99.3	39.8	43.5	62.6	-1.3	0	1.2	0	PS.lightreaction.other electron carrier (ox/red).ferredoxin	"FED A (FERREDOXIN 2); electron carrier/ iron ion binding encodes a ferredoxin gene Identical to Ferredoxin-1, chloroplast precursor (PETF1) [Arabidopsis Thaliana] (GB:P16972); similar to ATFD1 (FERREDOXIN 1), electron carrier/ iron ion binding [Arabidops"
MSGI1_18068	50318502	5.3	7.8	245.8	102.1	0	-1.3	-5.5	-3.7	stress.abiotic.drought/salt	RD22 (RESPONSIVE TO DESSICATION 22) responsive to dehydration 22 (RD22) mediated by ABA Identical to Dehydration-responsive protein RD22 precursor (RD22) [Arabidopsis Thaliana] (GB:Q08298); similar to BURP domain-containing protein [Arabidopsis thaliana]
MSGI1_21304	50318505	219.9	82.4	119.4	173.5	-1.4	0	0	-1.1	PS.lightreaction.other electron carrier (ox/red).plastocyanin	"DRT112 (DNA-damage-repair/toleration protein 112); copper ion binding / electron carrier recombination and DNA-damage resistance protein (DRT112) Identical to Plastocyanin major isoform, chloroplast precursor (DNA-damage- repair/toleration protein DRT112"
MSGI1_32237	50318524	13.7	50.7	78.7	8.7	1.9	-3.2	-2.5	2.5	not assigned.unknown	not assigned.unknown
MSGI1_21384	50318569	18.4	1.4	9.1	2.4	-3.7	0	0	0	lipid metabolism.Phospholipid synthesis	ATGPAT6/GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase Encodes a protein with glycerol-3-phosphate acyltransferase activity. Identical to Glycerol-3-phosphate acyltransferase 6 (EC 2.3.1.15)
MSGI1_33628	50318600	42.8	39.4	96.8	65.4	0	0	-1.2	0	amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase	GAD (Glutamate decarboxylase 1); calmodulin binding Encodes one of two isoforms of glutamate decarboxylase. Identical to Glutamate decarboxylase 1 (EC 4.1.1.15) (GAD 1) (GAD1) [Arabidopsis Thaliana] (GB:Q42521;GB:Q9FFH9); similar to glutamate decarboxyla
MSGI1_117006	50318615	59.7	64.5	37.6	95.2	0	1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_31795	50318628	32.8	19.2	8.3	4.1	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_124020	50318630	2	3.5	15.4	23.3	0	0	-2.9	-2.7	not assigned.unknown	not assigned.unknown
MSGI1_25803	50318638	12.1	15.1	57.4	22.9	0	-1.3	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_21035	50318660	54.9	23.7	248.4	37.9	-1.2	-2.7	-2.2	0	cell wall	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_21035	50318660	54.9	23.7	248.4	37.9	-1.2	-2.7	-2.2	0	lipid metabolism.lipid transfer proteins etc	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_38326	50318662	10.4	13.4	42.3	21.2	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_22004	50318679	1.7	1.6	15.9	0.8	0	-4.3	-3.2	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	CBF4/DREB1D (C- REPEAT-BINDING FACTOR 4); DNA binding / transcription factor/ transcriptional activator encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF4). The protein contains one AP2 domain. There are six members i
MSGI1_59798	50318684	63.4	49.5	22.9	56.9	0	1.3	1.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L17 (RPL17A)  Identical to 60S ribosomal protein L17-1 (RPL17A) [Arabidopsis Thaliana] (GB:Q93VI3;GB:Q9FZJ5); similar to 60S ribosomal protein L17 (RPL17B) [Arabidopsis thaliana] (TAIR:AT1G67430.1); similar to ribosomal protein [Pet
MSGI1_18399	50318701	12.8	0.3	6.2	0.2	-5.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_17854	50318731	0	0	777.1	1122.3	0	0	-10.6	-11.1	not assigned.unknown	not assigned.unknown
MSGI1_17136	50318733	12.9	17.4	45.9	32.3	0	0	-1.8	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G48750.1); similar to TED4 [Zinnia elegans] (GB:BAA06462.1)
MSGI1_17547	50318739	39	0.6	8	6.2	-6	0	2.3	0	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19180.1); similar to PnFL-2 [Ipomoea nil] (GB:AAG49896.1); contains InterPro domain ZIM; (InterPro:IPR010399)
MSGI1_79672	50318741	54.9	10.4	6.3	11.2	-2.4	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_18717	50318744	1.9	1.3	29.2	11.4	0	0	-3.9	0	"lipid metabolism.'exotics' (steroids, squalene etc)"	sterol carrier protein 2 (SCP-2) family protein  similar to Sterol-binding [Medicago truncatula] (GB:ABE88913.1); contains InterPro domain Sterol-binding; (InterPro:IPR003033)
MSGI1_18007	50318767	96.3	94.2	31.4	51.5	0	0	1.6	0	protein.synthesis.misc ribososomal protein	"RPS18C (S18 RIBOSOMAL PROTEIN); structural constituent of ribosome encodes a ribosomal protein S18C, a constituent of the small subunit of the ribosomal complex Identical to 40S ribosomal protein S18 (RPS18C) [Arabidopsis Thaliana] (GB:P34788;GB:Q94K22);"
MSGI1_19392	50318769	80.8	128.4	195.5	198.8	0	0	-1.3	0	protein.synthesis.initiation	EIF-5A (eukaryotic translation initiation factor 5A-1); translation initiation factor Encodes eukaryotic translation initiation factor 5A (EIF-5A). Identical to Eukaryotic translation initiation factor 5A-1 (eIF-5A-1) [Arabidopsis Thaliana] (GB:Q9XI91;GB
MSGI1_17852	50318778	60.4	139.1	127.4	35.3	1.2	-1.9	-1.1	2	not assigned.unknown	not assigned.unknown
MSGI1_16341	50318787	19.9	24.4	97.4	46.5	0	-1.1	-2.3	0	stress.abiotic.drought/salt	RD22 (RESPONSIVE TO DESSICATION 22) responsive to dehydration 22 (RD22) mediated by ABA Identical to Dehydration-responsive protein RD22 precursor (RD22) [Arabidopsis Thaliana] (GB:Q08298); similar to BURP domain-containing protein [Arabidopsis thaliana]
MSGI1_29840	50318799	174.8	63.9	92.5	171.6	-1.5	0	0	-1.4	PS.calvin cyle.phosphoglycerate kinase	"phosphoglycerate kinase, putative  similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2); similar to PGK1 (PHOSPHOGLYCERATE KINASE 1), phosphoglycerate kinase [Arabidopsis thaliana] (TAIR:AT3G12780.1); similar to chloroplast"
MSGI1_17587	50318813	16.4	64.7	34.6	12.7	2	0	0	2.3	stress	STZ (SALT TOLERANCE ZINC FINGER); nucleic acid binding / transcription factor/ zinc ion binding Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by
MSGI1_17587	50318813	16.4	64.7	34.6	12.7	2	0	0	2.3	RNA.regulation of transcription.C2H2 zinc finger family	STZ (SALT TOLERANCE ZINC FINGER); nucleic acid binding / transcription factor/ zinc ion binding Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by
MSGI1_17435	50318814	65.2	45.9	24.1	34.7	0	0	1.4	0	cell.cycle.peptidylprolyl isomerase	ROC7 (rotamase CyP 7); peptidyl-prolyl cis-trans isomerase Encodes cyclophilin ROC7. Identical to Peptidyl-prolyl cis-trans isomerase CYP20-1 precursor (EC 5.2.1.8) (PPIase CYP20-1) (Rotamase cyclophilin-7) (Cyclophilin of 20 kDa 1) (CYP20-1) [Arabidopsi
MSGI1_67744	50318842	69.5	97.4	29	44.8	0	0	1.3	1.1	not assigned.unknown	not assigned.unknown
MSGI1_21034	50318843	17.2	20.2	29.1	2.2	0	-3.7	0	3.2	DNA.repair	heavy-metal-associated domain-containing protein  similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G23760.1); similar to Unknown (protein for MGC:78286) [Mus musculus] (GB:AAH71252.1); contains InterPro domain He
MSGI1_23064	50318848	1.1	5.4	68.9	24.6	0	-1.5	-6	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_19391	50318856	22.7	27.6	136.3	13.8	0	-3.3	-2.6	0	development.unspecified	nodulin-related  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13930.1); similar to drought-induced protein SDi-6 - common sunflower (fragment) (GB:S71562)
MSGI1_19391	50318856	22.7	27.6	136.3	13.8	0	-3.3	-2.6	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_28629	50318864	64.4	51.8	176	22.7	0	-3	-1.5	1.2	not assigned.unknown	not assigned.unknown
MSGI1_29727	50318882	65.5	120.9	198.4	158.9	0	0	-1.6	0	protein.degradation.cysteine protease	"RD19 (RESPONSIVE TO DEHYDRATION 19); cysteine-type peptidase Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Identical to Cysteine proteinase RD19a precursor (EC 3.4.22.-) (RD19) (RD19A) [Arabidopsis Thaliana] (GB:P43296);"
MSGI1_20854	50318892	35.7	8.2	33.9	31.2	-2.1	0	0	-1.9	misc.invertase/pectin methylesterase inhibitor family protein	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT3G47380.1); similar to putative ripening-related protein [Vitis vinife
MSGI1_20854	50318892	35.7	8.2	33.9	31.2	-2.1	0	0	-1.9	cell wall	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT3G47380.1); similar to putative ripening-related protein [Vitis vinife
MSGI1_96531	50318901	63.1	38.9	32	37.3	0	0	1	0	stress.abiotic.heat	"SHD (SHEPHERD); ATP binding encodes an ortholog of GRP94, an ER-resident HSP90-like protein and is involved in regulation of meristem size and organization. Single and double mutant analyses suggest that SHD may be required for the correct folding and/or"
MSGI1_22741	50318913	0.3	0.4	54.1	9.2	0	-2.6	-7.5	0	development.late embryogenesis abundant	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein  similar to jacalin lectin family protein [Arabidopsis thaliana] (TAIR:AT3G16460.2); similar to group 1 LEA protein [Sisymbrium irio] (GB:AAY26119.1); co
MSGI1_19308	50318924	39.5	13.1	105.2	2.8	-1.6	-5.2	-1.4	0	stress.abiotic.cold	RCI2B (RARE-COLD-INDUCIBLE 2B)  Identical to Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B) (RCI2B) [Arabidopsis Thaliana] (GB:Q9ZNS6;GB:Q9M9K9); similar to RCI2A (RARE-COLD-INDUCIBLE 2A) [Arabidopsis thaliana] (TAIR:AT3G05
MSGI1_19308	50318924	39.5	13.1	105.2	2.8	-1.6	-5.2	-1.4	0	stress.abiotic.drought/salt	RCI2B (RARE-COLD-INDUCIBLE 2B)  Identical to Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B) (RCI2B) [Arabidopsis Thaliana] (GB:Q9ZNS6;GB:Q9M9K9); similar to RCI2A (RARE-COLD-INDUCIBLE 2A) [Arabidopsis thaliana] (TAIR:AT3G05
MSGI1_21033	50318939	273.2	128	71.8	106.8	-1.1	0	1.9	0	PS.lightreaction.photosystem I.PSI polypeptide subunits	"PSAK (PHOTOSYSTEM I SUBUNIT K) Encodes subunit K of photosystem I reaction center. Identical to Photosystem I reaction center subunit psaK, chloroplast precursor (Photosystem I subunit X) (PSI-K) (PSAK) [Arabidopsis Thaliana] (GB:Q9SUI5;GB:Q9C8G7); simil"
MSGI1_22972	50318941	4	1	19	2.9	0	-2.7	0	0	lipid metabolism.lipid transfer proteins etc	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_22972	50318941	4	1	19	2.9	0	-2.7	0	0	cell wall	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_19003	50318945	0.3	0.1	53.2	45.5	0	0	-7.5	-8.8	transport.p- and v-ATPases.H+-transporting two-sector ATPase	"AVA-P4 (vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4); ATPase vacuolar H+-pumping ATPase 16 kD proteolipid (ava-p) mRNA, Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 4 (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit 4) (AV"
MSGI1_36198	50318966	0	0	12.7	0	0	-4.7	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_17898	50318979	37.9	10.3	12.4	10.6	-1.9	0	1.6	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_29283	50318994	20.7	83.3	42.7	23.3	2	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_22596	50319000	35.2	91	252.3	289.2	1.4	0	-2.8	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_28344	50319021	16.6	48.8	25.2	64.8	1.6	1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_28540	50319037	68.3	29	36	55.7	-1.2	0	0	0	PS.lightreaction.other electron carrier (ox/red).ferredoxin	"FED A (FERREDOXIN 2); electron carrier/ iron ion binding encodes a ferredoxin gene Identical to Ferredoxin-1, chloroplast precursor (PETF1) [Arabidopsis Thaliana] (GB:P16972); similar to ATFD1 (FERREDOXIN 1), electron carrier/ iron ion binding [Arabidops"
MSGI1_30335	50319060	79.5	171.4	185.6	202.4	1.1	0	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_20969	50319079	1.5	3.4	17.2	3.7	0	0	-3.5	0	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS11 (Arabidopsis thaliana trehalose phosphatase/synthase 11); transferase, transferring glycosyl groups Encodes an enzyme putatively involved in trehalose biosynthesis.  The protein has a trehalose synthase (TPS)-like domain that may or may not be ac"
MSGI1_27027	50319112	62.8	30.6	190.6	92.8	-1	0	-1.6	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_27026	50319117	2.2	17.2	31.6	14.6	3	0	-3.8	0	cell wall.degradation	peptidoglycan-binding LysM domain-containing protein  similar to peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G25433.1); similar to Os10g0524300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065106.1); similar
MSGI1_38807	50319164	98.1	62.1	32.9	52.7	0	0	1.6	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L31 (RPL31C)  Identical to 60S ribosomal protein L31-3 (RPL31C) [Arabidopsis Thaliana] (GB:P51420;GB:Q8LEJ0;GB:Q9FJU1); similar to 60S ribosomal protein L31 (RPL31B) [Arabidopsis thaliana] (TAIR:AT4G26230.1); similar to 60S ribosomal
MSGI1_18851	50319173	89.5	282.7	60.5	441.4	1.7	2.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_47804	50319182	2.4	5.4	16.8	4.6	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_21650	50319213	315.8	309.4	1.6	0.7	0	0	7.6	8.8	not assigned.unknown	not assigned.unknown
MSGI1_21649	50319215	302.5	196.5	122.8	195.4	0	0	1.3	0	protein.synthesis.elongation	elongation factor 1-alpha / EF-1-alpha  Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A) (A4) [Arabidopsis Thaliana] (GB:P13905); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar
MSGI1_20795	50319282	75.8	40.6	31.2	14.2	0	0	1.3	1.5	RNA.regulation of transcription.Aux/IAA family	IAA16 (indoleacetic acid-induced protein 16); transcription factor early auxin-induced (IAA16) Identical to Auxin-responsive protein IAA16 (Indoleacetic acid-induced protein 16) (IAA16) [Arabidopsis Thaliana] (GB:O24407); similar to IAA7 (AUXIN RESISTANT
MSGI1_20795	50319282	75.8	40.6	31.2	14.2	0	0	1.3	1.5	hormone metabolism.auxin.induced-regulated-responsive-activated	IAA16 (indoleacetic acid-induced protein 16); transcription factor early auxin-induced (IAA16) Identical to Auxin-responsive protein IAA16 (Indoleacetic acid-induced protein 16) (IAA16) [Arabidopsis Thaliana] (GB:O24407); similar to IAA7 (AUXIN RESISTANT
MSGI1_37870	50319283	101.9	48.2	43.3	55.4	-1.1	0	1.2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L29 (RPL29B)  Identical to 60S ribosomal protein L29-2 (RPL29B) [Arabidopsis Thaliana] (GB:Q84WM0;GB:Q9M7X5); similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G06700.3); similar to Ribosomal L29e protein
MSGI1_78514	50319295	29.1	44.4	31.6	15.3	0	0	0	1.5	not assigned.unknown	not assigned.unknown
MSGI1_23063	50319305	50.9	26.7	15.6	27.4	0	0	1.7	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L13A (RPL13aD)  Identical to 60S ribosomal protein L13a-4 (RPL13AD) [Arabidopsis Thaliana] (GB:Q9FKC0;GB:Q42084); similar to 60S ribosomal protein L13A (RPL13aA) [Arabidopsis thaliana] (TAIR:AT3G07110.1); similar to 60S ribosomal pr
MSGI1_19390	50319314	1.5	0.3	20.6	4.7	0	0	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_16478	50319315	22.9	0.2	11.9	0.1	-6.8	-6.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_18321	50319327	11.1	0.1	6	0.2	-6.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_16840	50319328	232.8	235.7	648.6	401.1	0	0	-1.5	0	misc.peroxidases	PRXR1 (peroxidase 42); peroxidase Encodes AT4g21960 (AT4g21960/T8O5_170). Identical to Peroxidase 42 precursor (EC 1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b) (PER42) [Arabidopsis Thaliana] (GB:Q9SB81;GB:Q41937;GB:Q42579;GB:Q43730); similar to peroxida
MSGI1_18252	50319336	29.1	14	6.4	10.3	0	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_24979	50319357	152.4	174.9	45.1	36.9	0	0	1.8	2.2	amino acid metabolism.synthesis.aspartate family.methionine.S-adenosylmethionine synthetase	"MTO3 (S-adenosylmethionine synthase 3); methionine adenosyltransferase S-adenosylmethionine synthetase similar to SAM1 (S-adenosylmethionine synthetase 1), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT1G02500.2); similar to MAT2/SAM-2 (S"
MSGI1_24979	50319357	152.4	174.9	45.1	36.9	0	0	1.8	2.2	"metal handling.binding, chelation and storage"	"MTO3 (S-adenosylmethionine synthase 3); methionine adenosyltransferase S-adenosylmethionine synthetase similar to SAM1 (S-adenosylmethionine synthetase 1), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT1G02500.2); similar to MAT2/SAM-2 (S"
MSGI1_18320	50319362	10.8	0.1	3.7	0.1	-6.8	0	0	0	cell wall.pectin*esterases.misc	pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT5G51490.1); similar to pectinesterase (EC 3.1.1.11) PECS-c2 - sweet orange (GB:T10494); similar to Pectinesterase-2 precursor (Pectin methylesterase) (
MSGI1_17035	50319379	16	49.7	12.5	54.5	1.6	2.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_17807	50319387	79.4	20.1	48.3	20.4	-2	0	0	0	cell wall.pectin*esterases.acetyl esterase	"pectinacetylesterase family protein  similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT4G19410.1); similar to pectinacetylesterase precursor [Vigna radiata var. radiata] (GB:CAA67728.1); contains InterPro domain Pectinacetylesteras"
MSGI1_18319	50319390	58.9	48.1	177.1	20.2	0	-3.1	-1.6	1.3	not assigned.unknown	not assigned.unknown
MSGI1_17086	50319394	177.4	36.6	68.7	92.3	-2.3	0	1.4	-1.3	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_21238	50319397	40.1	70	178.8	37.8	0	-2.2	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_18006	50319401	59	27.2	51	77.4	-1.1	0	0	-1.5	PS.lightreaction.other electron carrier (ox/red).ferredoxin	"FED A (FERREDOXIN 2); electron carrier/ iron ion binding encodes a ferredoxin gene Identical to Ferredoxin-1, chloroplast precursor (PETF1) [Arabidopsis Thaliana] (GB:P16972); similar to ATFD1 (FERREDOXIN 1), electron carrier/ iron ion binding [Arabidops"
MSGI1_24643	50319409	36.2	12.3	15.2	18.3	-1.6	0	0	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_24643	50319409	36.2	12.3	15.2	18.3	-1.6	0	0	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_19389	50319412	37.7	21.8	114.6	15.6	0	-2.9	-1.6	0	stress.abiotic.drought/salt	ERD4 (EARLY-RESPONSIVE TO DEHYDRATION 4)  similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT1G32090.1); similar to Os07g0150100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058898.1); sim
MSGI1_18537	50319444	7.7	20.2	25.1	50.4	0	0	0	-1.3	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_18537	50319444	7.7	20.2	25.1	50.4	0	0	0	-1.3	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_18646	50319448	30.5	109.3	85.1	211.7	1.8	1.3	-1.5	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_18923	50319465	30.4	26.1	5	10.4	0	0	2.6	0	protein.synthesis.initiation	"eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative  similar to EIF2 ALPHA (eukaryotic translation initiation factor 2 alpha subunit), RNA binding [Arabidopsis thaliana] (TAIR:AT5G05470.1); similar to"
MSGI1_22740	50319470	18	43.2	91.7	93.8	0	0	-2.3	-1.1	not assigned.unknown	not assigned.unknown
MSGI1_19306	50319499	7.3	8.3	136.1	111.5	0	0	-4.2	-3.7	stress.abiotic.drought/salt	RD22 (RESPONSIVE TO DESSICATION 22) responsive to dehydration 22 (RD22) mediated by ABA Identical to Dehydration-responsive protein RD22 precursor (RD22) [Arabidopsis Thaliana] (GB:Q08298); similar to BURP domain-containing protein [Arabidopsis thaliana]
MSGI1_21931	50319504	31	8.2	18.8	30.4	-1.9	0	0	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_18645	50319505	59.6	12.7	35.2	12.3	-2.2	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_18645	50319505	59.6	12.7	35.2	12.3	-2.2	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_21518	50319514	174.7	13.3	25.1	18	-3.7	0	2.8	0	cell wall.modification	"ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thali"
MSGI1_17850	50319523	69.7	18.7	33.4	97.5	-1.9	1.5	1.1	-2.4	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_17953	50319525	29	0.1	2.3	0	-8.2	0	3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_21646	50319530	32.5	0.3	5.2	1.4	-6.8	0	2.6	0	secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase	"CHS (CHALCONE SYNTHASE); naringenin-chalcone synthase Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids.  Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of"
MSGI1_19001	50319533	28.4	33.8	45.1	5.7	0	-3	0	2.6	DNA.repair	heavy-metal-associated domain-containing protein  similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G23760.1); similar to Unknown (protein for MGC:78286) [Mus musculus] (GB:AAH71252.1); contains InterPro domain He
MSGI1_28739	50319537	58.6	76.3	30.5	77	0	1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_18398	50319550	43.2	45	138.8	42.7	0	-1.7	-1.7	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_18398	50319550	43.2	45	138.8	42.7	0	-1.7	-1.7	0	stress.abiotic.drought/salt	similar to nodulin-related [Arabidopsis thaliana] (TAIR:AT2G03440.1); similar to drought-induced protein SDi-6 - common sunflower (fragment) (GB:S71562)
MSGI1_17340	50319559	151	235.2	565.3	370.8	0	0	-1.9	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G48750.1); similar to TED4 [Zinnia elegans] (GB:BAA06462.1)
MSGI1_37081	50319564	38.5	18.3	95.3	22.9	0	-2.1	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_29085	50319569	15.6	21.4	0.8	0.2	0	0	4.3	6.7	stress.abiotic.drought/salt	RD22 (RESPONSIVE TO DESSICATION 22) responsive to dehydration 22 (RD22) mediated by ABA Identical to Dehydration-responsive protein RD22 precursor (RD22) [Arabidopsis Thaliana] (GB:Q08298); similar to BURP domain-containing protein [Arabidopsis thaliana]
MSGI1_66916	50319576	12.4	0.1	7.7	1.6	-7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_22074	50319581	76.3	43.1	29.8	42.2	0	0	1.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L31 (RPL31C)  Identical to 60S ribosomal protein L31-3 (RPL31C) [Arabidopsis Thaliana] (GB:P51420;GB:Q8LEJ0;GB:Q9FJU1); similar to 60S ribosomal protein L31 (RPL31B) [Arabidopsis thaliana] (TAIR:AT4G26230.1); similar to 60S ribosomal
MSGI1_33626	50319583	58.3	58.1	485.7	139.8	0	-1.8	-3.1	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_34874	50319592	24	0.4	3.4	2.2	-5.9	0	2.8	0	secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase	"CHS (CHALCONE SYNTHASE); naringenin-chalcone synthase Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids.  Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of"
MSGI1_31902	50319600	111.8	69.7	48.8	92.8	0	0	1.2	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S3 (RPS3A)  Identical to 40S ribosomal protein S3-1 (RPS3A) [Arabidopsis Thaliana] (GB:Q9SIP7); similar to 40S ribosomal protein S3 (RPS3B) [Arabidopsis thaliana] (TAIR:AT3G53870.1); similar to ribosomal protein S3 [Medicago truncat
MSGI1_44783	50319604	86.4	48.5	95.1	104.3	0	0	0	-1.1	PS.lightreaction.ATP synthase	"ATP synthase family  similar to H+-transporting two-sector ATPase, B/B subunit [Medicago truncatula] (GB:ABE81773.1); contains InterPro domain ATPase, F0 complex, subunit B/B&apos; (InterPro:IPR002146)"
MSGI1_21236	50319632	20.8	62.8	37.8	119.3	1.6	1.7	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_22661	50319637	93.5	170.1	238.8	67.8	0	-1.8	-1.4	1.3	not assigned.unknown	not assigned.unknown
MSGI1_28077	50319669	71.7	36.7	17.5	56.2	0	1.7	2	0	protein.synthesis.misc ribososomal protein	"RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome Encodes a putative ribosomal protein S6 (rps6). Identical to 40S ribosomal protein S6-1 (RPS6A) [Arabidopsis Thaliana] (GB:O48549;GB:O81777); similar to EMB3010 (EMBRYO DEFECTIVE 3010), stru"
MSGI1_34873	50319672	13.5	0.3	19.5	0.9	-5.5	-4.4	0	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G62510.1); similar to 14 kDa polypeptide [Catharanthus rose
MSGI1_18713	50319675	42.8	53.1	18.8	45.5	0	1.3	0	0	protein.degradation.ubiquitin.E2	UBC8 (UBIQUITIN CONJUGATING ENZYME 8); ubiquitin-protein ligase One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2 Identical to Ubiquitin-conjugating enzyme E2-17 kDa 8 (EC 6.3.2.19) (Ubiquitin- protein ligase 8) (Ubiquitin carri
MSGI1_40409	50319699	0.6	0.7	11.9	0.6	0	-4.3	-4.3	0	misc.cytochrome P450	"CYP72A7 (cytochrome P450, family 72, subfamily A, polypeptide 7); oxygen binding putative cytochrome P450 similar to CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14690.1); similar to"
MSGI1_21382	50319701	111.4	198.2	332.4	61.7	0	-2.4	-1.6	1.7	not assigned.unknown	not assigned.unknown
MSGI1_70362	50319704	18.5	19.3	45.1	11.3	0	-2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_50784	50319711	31.4	25.2	58.9	26.3	0	-1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_19248	50319713	9.3	7.3	50.7	39	0	0	-2.4	-2.4	PS.lightreaction.photosystem II.PSII polypeptide subunits	"PSBR (photosystem II subunit R) Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gen"
MSGI1_24172	50319719	68.8	36.2	25.2	30.1	0	0	1.4	0	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2A.4 (HTA12) [Arabidopsis Thaliana] (GB:Q9LZ46); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT5G59870.1); similar to Histone H2A (GB:Q9M531); contains InterPro domain Histone-fold;"
MSGI1_17339	50319720	38.3	12.7	21.4	52.5	-1.6	1.3	0	-2	lipid metabolism.FA desaturation.omega 6 desaturase	"FAD2 (FATTY ACID DESATURASE 2); delta12-fatty acid dehydrogenase Major enzyme responsible for the synthesis of 18:2 fatty acids in the endoplasmic reticulum. Contains His-rich motifs, which contribute to the interaction with the electron donor cytochrome"
MSGI1_17805	50319726	82.3	44.8	14.3	29.1	0	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_18249	50319734	165.4	19	107.2	41	-3.1	-1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_38324	50319742	15.4	11.5	56.9	12.3	0	-2.2	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_16239	50319744	2.5	10	54.8	12.1	0	-2.2	-4.5	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. simi"
MSGI1_16838	50319751	11.9	33.5	32.3	75.5	0	1.2	0	-1.2	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_16838	50319751	11.9	33.5	32.3	75.5	0	1.2	0	-1.2	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_30334	50319760	37.8	40.5	69.8	25	0	-1.5	0	0	stress.abiotic.drought/salt	"ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis. similar to senescence/dehydration-associated protein-"
MSGI1_30334	50319760	37.8	40.5	69.8	25	0	-1.5	0	0	development.unspecified	"ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis. similar to senescence/dehydration-associated protein-"
MSGI1_16580	50319761	103.9	24.7	51.3	79.7	-2.1	0	1	-1.7	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_44397	50319773	0.1	0.1	34.7	14.4	0	0	-8.4	-7.2	not assigned.unknown	not assigned.unknown
MSGI1_18532	50319780	11.3	0.1	7.5	0.1	-6.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_17133	50319786	33	0.1	3.8	0.1	-8.4	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_24978	50319823	24.5	0.7	7.3	9.9	-5.1	0	0	0	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19180.1); similar to PnFL-2 [Ipomoea nil] (GB:AAG49896.1); contains InterPro domain ZIM; (InterPro:IPR010399)
MSGI1_24801	50319825	11.5	4.6	23.3	4.7	0	-2.3	0	0	lipid metabolism.lipid transfer proteins etc	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_24801	50319825	11.5	4.6	23.3	4.7	0	-2.3	0	0	cell wall	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_26751	50319863	69.6	51.8	32	45.4	0	0	1.1	0	cell wall	GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP5) Identical to Germin-like protein subfamily 2 member 1 precursor (GLP4) [Arabidopsis Thaliana] (GB:P94014;GB:O80538;GB:P94097); similar
MSGI1_26751	50319863	69.6	51.8	32	45.4	0	0	1.1	0	stress.abiotic.unspecified	GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP5) Identical to Germin-like protein subfamily 2 member 1 precursor (GLP4) [Arabidopsis Thaliana] (GB:P94014;GB:O80538;GB:P94097); similar
MSGI1_26658	50319864	18.1	5.1	9.6	25.1	0	0	0	-2.3	misc.UDP glucosyl and glucoronyl transferases	"UGT73C2 (UDP-glucosyl transferase 73C2); UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G3"
MSGI1_37869	50319882	43.8	19.2	11.8	15.3	0	0	1.9	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L29 (RPL29B)  Identical to 60S ribosomal protein L29-2 (RPL29B) [Arabidopsis Thaliana] (GB:Q84WM0;GB:Q9M7X5); similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G06700.3); similar to Ribosomal L29e protein
MSGI1_26204	50319890	19.4	22.5	10.7	3.5	0	0	0	2.7	not assigned.unknown	not assigned.unknown
MSGI1_27872	50319935	36.5	19	11.3	22.2	0	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_26203	50319940	44.7	24.4	14.8	26.2	0	0	1.6	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L35 (RPL35D)  Identical to 60S ribosomal protein L35-4 (RPL35D) [Arabidopsis Thaliana] (GB:Q9LZ41); similar to 60S ribosomal protein L35 (RPL35B) [Arabidopsis thaliana] (TAIR:AT2G39390.1); similar to 60S ribosomal protein L35 (RPL35A
MSGI1_24476	50319946	15.2	53	35.7	12.2	1.8	-1.5	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_43378	50319970	84.9	43.2	22.8	44	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_32933	50320034	3	2.2	31.6	5.8	0	-2.4	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_24328	50320048	19.4	7.9	50.3	17.5	0	-1.5	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_42489	50320069	32.7	27.5	3	1.2	0	0	3.4	4.5	not assigned.unknown	not assigned.unknown
MSGI1_24640	50320070	160.6	183.9	600.8	726.5	0	0	-1.9	-2	not assigned.unknown	not assigned.unknown
MSGI1_32360	50320089	101.5	56.7	39.6	43.8	0	0	1.4	0	protein.synthesis.misc ribososomal protein	ATRPL23A (RIBOSOMAL PROTEIN L23A); RNA binding / structural constituent of ribosome Encodes a putative ribosomal protein L23a (AtrpL23a). Identical to 60S ribosomal protein L23a-1 (AtRPL23A-1) (RPL23AA) [Arabidopsis Thaliana] (GB:Q8LD46;GB:O48553;GB:O806
MSGI1_43577	50320102	80.1	0.5	2.2	0	-7.3	0	5.2	0	cell wall	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25460.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain Protein of unknown function DUF642
MSGI1_24245	50320146	48.3	23.3	20.2	28.9	0	0	1.3	0	cell wall.precursor synthesis.AXS	AXS1 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 1) Encodes UDP-d-apiose/UDP-d-xylose synthase that requires NAD+ for enzymatic activity and is strongly inhibited by UDP-d-galacturonate. similar to AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2) [Arabidopsis thalian
MSGI1_24721	50320149	48.9	1.6	90.4	2.1	-4.9	-5.4	0	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G62510.1); similar to 14 kDa polypeptide [Catharanthus rose
MSGI1_18460	50320152	44.4	33	155.3	39.8	0	-2	-1.8	0	development.late embryogenesis abundant	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication. Identical to Putative desiccation-related prot
MSGI1_17693	50320163	37.8	30	13	21.4	0	0	1.5	0	RNA.regulation of transcription.General Transcription	"LIM domain-containing protein  similar to LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G39900.1); similar to LIM domain protein WLIM2a [Populus tremula x Populus alba] (GB:ABK58469.1); contains InterPro domain LIM, zinc-binding; (InterPr"
MSGI1_19122	50320167	62.2	13.6	24.9	18	-2.2	0	1.3	0	misc.invertase/pectin methylesterase inhibitor family protein	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT3G47380.1); similar to putative ripening-related protein [Vitis vinife
MSGI1_19122	50320167	62.2	13.6	24.9	18	-2.2	0	1.3	0	cell wall	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT3G47380.1); similar to putative ripening-related protein [Vitis vinife
MSGI1_18397	50320177	17.9	0.1	12.7	0.3	-7.5	-5.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_19387	50320183	19	0.5	6.4	0.1	-5.2	0	0	0	hormone metabolism.auxin.synthesis-degradation	"UGT74B1 (UDP-glucosyl transferase 74B1); UDP-glycosyltransferase/ thiohydroximate beta-D-glucosyltransferase/ transferase, transferring glycosyl groups Encodes a UDP-glucose:thiohydroximate S-glucosyltransferase, involved in glucosinolate biosynthesis si"
MSGI1_19387	50320183	19	0.5	6.4	0.1	-5.2	0	0	0	cell wall	"UGT74B1 (UDP-glucosyl transferase 74B1); UDP-glycosyltransferase/ thiohydroximate beta-D-glucosyltransferase/ transferase, transferring glycosyl groups Encodes a UDP-glucose:thiohydroximate S-glucosyltransferase, involved in glucosinolate biosynthesis si"
MSGI1_16985	50320187	25.8	11.6	69.5	17	0	-2	-1.4	0	lipid metabolism.lipid transfer proteins etc	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_16985	50320187	25.8	11.6	69.5	17	0	-2	-1.4	0	cell wall	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_23410	50320194	5.7	0	12.8	0.3	0	-5.4	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	"auxin-responsive protein, putative  similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G21210.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12778.1); contains InterPro domain Auxin responsive SAUR prot"
MSGI1_21793	50320195	9.4	11.1	33.5	4.5	0	-2.9	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_22516	50320196	1.6	2.6	42.5	52.1	0	0	-4.7	-4.3	RNA.regulation of transcription.unclassified	zinc finger (AN1-like) family protein  Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 4 (AtSAP4) (SAP4) [Arabidopsis Thaliana] (GB:Q9SJM6;GB:Q0IGN9); similar to zinc finger (AN1-like) family protein [Arabidopsis thaliana
MSGI1_35399	50320214	2.2	2.7	19.5	16.5	0	0	-3.1	-2.6	not assigned.unknown	not assigned.unknown
MSGI1_16632	50320216	19.3	51.6	96.4	142.5	1.4	0	-2.3	-1.5	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_16632	50320216	19.3	51.6	96.4	142.5	1.4	0	-2.3	-1.5	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_19121	50320236	29.5	0.8	5.3	0.7	-5.2	0	2.5	0	misc.plastocyanin-like	plastocyanin-like domain-containing protein  similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G18590.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO17030.1); similar to Os03g011500
MSGI1_19121	50320236	29.5	0.8	5.3	0.7	-5.2	0	2.5	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_18459	50320238	40.3	9.3	42.9	30.2	-2.1	0	0	-1.7	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_18459	50320238	40.3	9.3	42.9	30.2	-2.1	0	0	-1.7	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_48483	50320243	86.6	21.3	21.9	17.7	-2	0	2	0	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2A.4 (HTA12) [Arabidopsis Thaliana] (GB:Q9LZ46); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT5G59870.1); similar to Histone H2A (GB:Q9M531); contains InterPro domain Histone-fold;"
MSGI1_19120	50320279	298.5	63	116	187.5	-2.2	0	1.4	-1.6	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_51510	50320290	64.4	133.1	117.7	119.5	1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_24474	50320303	99.9	133.3	53.6	237.7	0	2.1	0	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_19057	50320312	154.4	32.5	140	194.2	-2.2	0	0	-2.6	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_74912	50320327	14.6	31.2	57.4	17.5	0	-1.7	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_22593	50320352	10.3	16.6	110.1	4.6	0	-4.6	-3.4	0	signalling.calcium	"calcium-binding EF hand family protein  similar to calmodulin-related protein, putative [Arabidopsis thaliana] (TAIR:AT1G76640.1); similar to regulator of gene silencing [Nicotiana tabacum] (GB:AAK11255.1); contains InterPro domain EF-Hand type; (InterPr"
MSGI1_29947	50320353	17.7	9.7	54.3	18.1	0	-1.6	-1.6	0	transporter.sugars	"ATINT1 (INOSITOL TRANSPORTER 1); carbohydrate transporter/ sugar porter  Identical to Probable inositol transporter 1 (INT1) [Arabidopsis Thaliana] (GB:Q8VZR6;GB:O22848); similar to ATINT2 (INOSITOL TRANSPORTER 2), carbohydrate transporter/ sugar porter"
MSGI1_22439	50320354	0.8	0.3	29.2	3.7	0	-3	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_22438	50320369	10	4.4	14.7	1.7	0	-3.1	0	0	signalling.in sugar and nutrient physiology	"photoassimilate-responsive protein-related  similar to photoassimilate-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT5G52390.1); similar to NtEIG-E80 [Nicotiana tabacum] (GB:BAB16427.1); contains InterPro domain PAR1; (InterPro:IPR009489)"
MSGI1_29724	50320377	50.7	48.8	26.8	58.8	0	1.1	0	0	RNA.RNA binding	"nuclear RNA-binding protein, putative  similar to nuclear RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT4G17520.1); similar to nuclear RNA binding protein, putative [Brassica oleracea] (GB:ABD64914.1); contains InterPro domain Hyaluronan/m"
MSGI1_24638	50320378	36.4	10.5	18.9	17.6	-1.8	0	0	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	"oxygen-evolving complex-related  Identical to Unknown thylakoid lumen protein, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9S720); similar to thylakoid lumen protein, chloroplast precursor-related [Medicago truncatula] (GB:ABE82597.1); similar to O"
MSGI1_25069	50320380	114.5	61.3	27.6	56	0	1	2.1	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S9 (RPS9C)  Identical to 40S ribosomal protein S9-2 (RPS9C) [Arabidopsis Thaliana] (GB:Q9FLF0); similar to 40S ribosomal protein S9 (RPS9B) [Arabidopsis thaliana] (TAIR:AT5G15200.1); similar to 40S ribosomal protein S9 [Catharanthus
MSGI1_57661	50320407	0	0.1	20.4	7.6	0	0	-5.4	0	not assigned.unknown	not assigned.unknown
MSGI1_18588	50320417	5.4	13.5	24.8	46.8	0	0	-2.2	-1.8	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_18588	50320417	5.4	13.5	24.8	46.8	0	0	-2.2	-1.8	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_54640	50320445	6.3	11.1	20.2	3.3	0	-2.6	0	0	RNA.regulation of transcription.unclassified	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT1G66180.1); similar to Os01g0844500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044781.1); similar to Aspartic proteinase nepenthesin-1 pr
MSGI1_24244	50320462	93.3	34.7	40.3	42.4	-1.4	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_22002	50320463	50.7	20.8	12	8.6	-1.3	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_79671	50320467	138.9	152	165.7	71.9	0	-1.2	0	1.1	not assigned.unknown	not assigned.unknown
MSGI1_18844	50320469	21.8	19.6	5.2	6.2	0	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_18065	50320470	18.4	23.1	33.4	51.7	0	0	0	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_18313	50320475	14.5	0.1	13.4	0.3	-7.2	-5.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_21301	50320481	100.3	44.1	121.6	126.2	-1.2	0	0	-1.5	PS.lightreaction.photosystem I.PSI polypeptide subunits	"PSAK (PHOTOSYSTEM I SUBUNIT K) Encodes subunit K of photosystem I reaction center. Identical to Photosystem I reaction center subunit psaK, chloroplast precursor (Photosystem I subunit X) (PSI-K) (PSAK) [Arabidopsis Thaliana] (GB:Q9SUI5;GB:Q9C8G7); simil"
MSGI1_18394	50320489	6.5	4.3	27	7.9	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_18126	50320494	1.1	0.6	37.7	0.3	0	-7	-5.1	0	misc.UDP glucosyl and glucoronyl transferases	"GT/UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2); UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Induced by Salicylic acid, virus, fungus and bacteria.Involved in the trypto"
MSGI1_18126	50320494	1.1	0.6	37.7	0.3	0	-7	-5.1	0	cell wall	"GT/UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2); UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Induced by Salicylic acid, virus, fungus and bacteria.Involved in the trypto"
MSGI1_18458	50320503	90.8	9.9	76.8	25.2	-3.2	-1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_21791	50320506	97.1	47.5	41.9	52.6	-1	0	1.2	0	protein.synthesis.misc ribososomal protein	"EMB1080 (EMBRYO DEFECTIVE 1080); structural constituent of ribosome  Identical to 40S ribosomal protein S11-1 (RPS11A) [Arabidopsis Thaliana] (GB:P16181); similar to RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA), structural constituent of ribosome [Arabidopsis"
MSGI1_22513	50320515	88.2	105.9	210.9	89.5	0	-1.2	-1.3	0	protein.degradation.cysteine protease	"cysteine proteinase (RD21A) / thiol protease  Identical to Cysteine proteinase RD21a precursor (EC 3.4.22.-) (RD21) (RD21A) [Arabidopsis Thaliana] (GB:P43297); similar to cysteine proteinase, putative / thiol protease, putative [Arabidopsis thaliana] (TA"
MSGI1_21790	50320521	65.8	109.4	299	59.9	0	-2.3	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_24881	50320524	406	610.6	333.4	2107.1	0	2.7	0	-1.8	major CHO metabolism.degradation.starch.starch cleavage	"ATBETA-AMY (BETA-AMYLASE); beta-amylase cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. Identical to Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (BMY"
MSGI1_39714	50320531	90.4	21.4	54.6	48	-2.1	0	0	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	photosystem II 5 kD protein  similar to PSBTN (photosystem II subunit T) [Arabidopsis thaliana] (TAIR:AT3G21055.1); similar to unknown [Brassica rapa] (GB:ABD91572.1)
MSGI1_30978	50320551	25.7	13.5	130.8	26.9	0	-2.3	-2.3	0	cell wall	LCR68/PDF2.3 (Low-molecular-weight cysteine-rich 68); protease inhibitor  Identical to Probable low-molecular-weight cysteine-rich protein LCR68 precursor (LCR68) [Arabidopsis Thaliana] (GB:Q9ZUL7); similar to LCR69/PDF2.2 (Low-molecular-weight cysteine-
MSGI1_30978	50320551	25.7	13.5	130.8	26.9	0	-2.3	-2.3	0	cell wall	LCR68/PDF2.3 (Low-molecular-weight cysteine-rich 68); protease inhibitor  Identical to Probable low-molecular-weight cysteine-rich protein LCR68 precursor (LCR68) [Arabidopsis Thaliana] (GB:Q9ZUL7); similar to LCR69/PDF2.2 (Low-molecular-weight cysteine-
MSGI1_30978	50320551	25.7	13.5	130.8	26.9	0	-2.3	-2.3	0	stress.biotic	LCR68/PDF2.3 (Low-molecular-weight cysteine-rich 68); protease inhibitor  Identical to Probable low-molecular-weight cysteine-rich protein LCR68 precursor (LCR68) [Arabidopsis Thaliana] (GB:Q9ZUL7); similar to LCR69/PDF2.2 (Low-molecular-weight cysteine-
MSGI1_30978	50320551	25.7	13.5	130.8	26.9	0	-2.3	-2.3	0	"metal handling.binding, chelation and storage"	LCR68/PDF2.3 (Low-molecular-weight cysteine-rich 68); protease inhibitor  Identical to Probable low-molecular-weight cysteine-rich protein LCR68 precursor (LCR68) [Arabidopsis Thaliana] (GB:Q9ZUL7); similar to LCR69/PDF2.2 (Low-molecular-weight cysteine-
MSGI1_21930	50320570	84	4.2	900.1	67.7	-4.3	-3.7	-3.4	-4	lipid metabolism.lipid transfer proteins etc	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_21930	50320570	84	4.2	900.1	67.7	-4.3	-3.7	-3.4	-4	cell wall	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_28075	50320573	65.3	133.7	81.3	91.4	1	0	0	0	major CHO metabolism.degradation.sucrose.Susy	"SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups Encodes a protein with sucrose synthase activity (SUS4). similar to SUS1 (SUCROSE SYNTHASE 1), UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TA"
MSGI1_28075	50320573	65.3	133.7	81.3	91.4	1	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_22000	50320593	44.7	92.8	71	51.6	1.1	0	0	0	RNA.regulation of transcription.unclassified	zinc finger (AN1-like) family protein  Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 5 (AtSAP5) (SAP5) [Arabidopsis Thaliana] (GB:Q9LHJ8); similar to DNA binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G51200
MSGI1_21575	50320603	58.2	102.1	191.8	43.4	0	-2.1	-1.7	1.2	not assigned.unknown	not assigned.unknown
MSGI1_25950	50320665	7.2	28.8	30.3	8.2	2	-1.9	-2.1	1.8	not assigned.unknown	not assigned.unknown
MSGI1_38990	50320682	28.4	50	93.3	54.4	0	0	-1.7	0	secondary metabolism.flavonoids.dihydroflavonols	UDP-glucoronosyl/UDP-glucosyl transferase family protein the glycosyltransferase (UGT72B1) is involved in metabolizing xenobiotica (chloroaniline and chlorophenole). Comparison between wild type and knock-out mutant demonstrates the central role of this g
MSGI1_24082	50320712	58.8	309.8	325.1	273.8	2.4	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_24401	50320713	7.3	7.6	55.2	39.5	0	0	-2.9	-2.4	development.late embryogenesis abundant	late embryogenesis abundant family protein / LEA family protein  similar to LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) [Arabidopsis thaliana] (TAIR:AT1G01470.1); similar to Os03g0843300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051862.1); similar to
MSGI1_21300	50320753	24.8	27.1	97.7	32.2	0	-1.6	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_22659	50320784	109.4	57.3	42.1	66.1	0	0	1.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L13A (RPL13aD)  Identical to 60S ribosomal protein L13a-4 (RPL13AD) [Arabidopsis Thaliana] (GB:Q9FKC0;GB:Q42084); similar to 60S ribosomal protein L13A (RPL13aA) [Arabidopsis thaliana] (TAIR:AT3G07110.1); similar to 60S ribosomal pr
MSGI1_25483	50320809	15.8	8.9	113.3	8.9	0	-3.7	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_28738	50320818	54.3	120.9	63.1	22.7	1.2	-1.5	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_21863	50320855	5.1	2.9	16.2	30.7	0	0	0	-3.4	hormone metabolism.jasmonate.synthesis-degradation.allene oxidase cyclase	"AOC3 (ALLENE OXIDE CYCLASE 3) Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis.  One of four genes in Arabidopsis that encode this enzyme.  mRNA expression is upregulated in senescing leaves.  Note: Nomenclature for"
MSGI1_24975	50320862	2.5	1.7	241.6	84.8	0	-1.5	-6.6	-5.6	cell wall	LCR68/PDF2.3 (Low-molecular-weight cysteine-rich 68); protease inhibitor  Identical to Probable low-molecular-weight cysteine-rich protein LCR68 precursor (LCR68) [Arabidopsis Thaliana] (GB:Q9ZUL7); similar to LCR69/PDF2.2 (Low-molecular-weight cysteine-
MSGI1_24975	50320862	2.5	1.7	241.6	84.8	0	-1.5	-6.6	-5.6	cell wall	LCR68/PDF2.3 (Low-molecular-weight cysteine-rich 68); protease inhibitor  Identical to Probable low-molecular-weight cysteine-rich protein LCR68 precursor (LCR68) [Arabidopsis Thaliana] (GB:Q9ZUL7); similar to LCR69/PDF2.2 (Low-molecular-weight cysteine-
MSGI1_24975	50320862	2.5	1.7	241.6	84.8	0	-1.5	-6.6	-5.6	"metal handling.binding, chelation and storage"	LCR68/PDF2.3 (Low-molecular-weight cysteine-rich 68); protease inhibitor  Identical to Probable low-molecular-weight cysteine-rich protein LCR68 precursor (LCR68) [Arabidopsis Thaliana] (GB:Q9ZUL7); similar to LCR69/PDF2.2 (Low-molecular-weight cysteine-
MSGI1_24975	50320862	2.5	1.7	241.6	84.8	0	-1.5	-6.6	-5.6	stress.biotic	LCR68/PDF2.3 (Low-molecular-weight cysteine-rich 68); protease inhibitor  Identical to Probable low-molecular-weight cysteine-rich protein LCR68 precursor (LCR68) [Arabidopsis Thaliana] (GB:Q9ZUL7); similar to LCR69/PDF2.2 (Low-molecular-weight cysteine-
MSGI1_21929	50320890	13.3	0.2	4.6	0.3	-6.1	0	0	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	SHN3 (SHINE3); DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
MSGI1_31900	50320903	45.2	69.6	13.4	10.9	0	0	1.8	2.7	hormone metabolism.brassinosteroid.signal transduction.BRI	BIN2 (BRASSINOSTEROID-INSENSITIVE 2); kinase ATSK (shaggy-like kinase) family member that encodes an AtSK protein involved in the cross-talk between auxin and brassinosteroid signaling pathways. BR-INSENSITIVE 2 mutant indicated that the BR-insensitive d
MSGI1_115817	50320925	40.6	10.1	41.2	8.9	-2	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_33104	50320941	51	29.6	20.1	40.2	0	0	1.3	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S29 (RPS29C)  Identical to 40S ribosomal protein S29 (RPS29C) [Arabidopsis Thaliana] (GB:Q680P8;GB:Q9LDT9); similar to 40S ribosomal protein S29 (RPS29B) [Arabidopsis thaliana] (TAIR:AT3G44010.1); similar to 40S ribosomal protein S29
MSGI1_116649	50320972	82.1	2.6	29.2	1.9	-5	-3.9	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_21998	50320979	101.2	50.1	71	51.5	-1	0	0	0	cell wall.cellulose synthesis.cellulose synthase	"CESA2 (CELLULASE SYNTHASE 2); cellulose synthase/ transferase, transferring glycosyl groups Encodes a cellulose synthase catalytic subunit. Identical to Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC 2.4.1.12) (AtCesA-2) (Ath-A) (CESA2) [Arab"
MSGI1_32810	50320989	56.6	15.8	17	13	-1.8	0	1.7	0	DNA.synthesis/chromatin structure.histone	histone H2B  Identical to Histone H2B.11 (HTB4) [Arabidopsis Thaliana] (GB:P40283;GB:Q5PP00;GB:Q8LDE5;GB:Q9FJE5); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold;
MSGI1_24553	50320998	16.4	1.4	7.8	0.8	-3.6	0	0	0	lipid metabolism.Phospholipid synthesis	ATGPAT6/GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase Encodes a protein with glycerol-3-phosphate acyltransferase activity. Identical to Glycerol-3-phosphate acyltransferase 6 (EC 2.3.1.15)
MSGI1_38508	50320999	80.4	33.2	9.8	12.6	-1.3	0	3	0	DNA.synthesis/chromatin structure.histone	"histone H2B, putative  Identical to Putative histone H2B.9 (HTB10) [Arabidopsis Thaliana] (GB:Q9LZ45); similar to histone H2B, putative [Arabidopsis thaliana] (TAIR:AT3G53650.1); similar to Probable histone H2B.3 (GB:Q1SU99); similar to Probable histone"
MSGI1_53299	50321002	17.3	17.7	22.6	4.1	0	-2.5	0	0	signalling.in sugar and nutrient physiology	"phosphate-responsive protein, putative (EXO)  similar to PHI-1 (PHOSPHATE-INDUCED 1) [Arabidopsis thaliana] (TAIR:AT1G35140.1); similar to phi-1 [Nicotiana tabacum] (GB:BAA33810.1); contains InterPro domain Phosphate-induced protein 1 conserved region; ("
MSGI1_53299	50321002	17.3	17.7	22.6	4.1	0	-2.5	0	0	cell wall	"phosphate-responsive protein, putative (EXO)  similar to PHI-1 (PHOSPHATE-INDUCED 1) [Arabidopsis thaliana] (TAIR:AT1G35140.1); similar to phi-1 [Nicotiana tabacum] (GB:BAA33810.1); contains InterPro domain Phosphate-induced protein 1 conserved region; ("
MSGI1_22877	50321010	2.9	6.5	26.6	33.7	0	0	-3.2	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_54639	50321015	151.6	89.7	56.3	82.1	0	0	1.4	0	nucleotide metabolism.phosphotransfer and pyrophosphatases.nucleoside diphosphate kinase	"NDPK1 (nucleoside diphosphate kinase 1); ATP binding / nucleoside diphosphate kinase nucleoside diphosphate kinase type 1 (NDPK1) gene, complete Identical to Nucleoside diphosphate kinase 1 (EC 2.7.4.6) (Nucleoside diphosphate kinase I) (NDK I) (NDP kina"
MSGI1_95743	50321021	1.8	3.4	24	1.8	0	-3.7	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_31212	50321025	7.3	17.5	0.1	0	0	0	0	5.1	not assigned.unknown	not assigned.unknown
MSGI1_24880	50321105	218	177.7	57.5	95.1	0	0	1.9	0	amino acid metabolism.synthesis.serine-glycine-cysteine group.glycine.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_24880	50321105	218	177.7	57.5	95.1	0	0	1.9	0	PS.photorespiration.serine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_24880	50321105	218	177.7	57.5	95.1	0	0	1.9	0	C1-metabolism.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_86398	50321115	2.1	9.2	16.2	12	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_23967	50321137	63.1	29.3	23.7	28.7	-1.1	0	1.4	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S25 (RPS25B)  Identical to 40S ribosomal protein S25-2 (RPS25B) [Arabidopsis Thaliana] (GB:Q9SIK2); similar to 40S ribosomal protein S25 (RPS25E) [Arabidopsis thaliana] (TAIR:AT4G39200.1); similar to S25 ribosomal protein [Medicago t
MSGI1_22590	50321165	32.7	14.1	9.6	8.2	0	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_34872	50321204	51	60.4	15.7	8.3	0	0	1.7	2.9	"metal handling.binding, chelation and storage"	"MTO3 (S-adenosylmethionine synthase 3); methionine adenosyltransferase S-adenosylmethionine synthetase similar to SAM1 (S-adenosylmethionine synthetase 1), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT1G02500.2); similar to MAT2/SAM-2 (S"
MSGI1_34872	50321204	51	60.4	15.7	8.3	0	0	1.7	2.9	amino acid metabolism.synthesis.aspartate family.methionine.S-adenosylmethionine synthetase	"MTO3 (S-adenosylmethionine synthase 3); methionine adenosyltransferase S-adenosylmethionine synthetase similar to SAM1 (S-adenosylmethionine synthetase 1), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT1G02500.2); similar to MAT2/SAM-2 (S"
MSGI1_57345	50321229	0.9	3.3	12.7	2.2	0	0	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_22510	50321257	36.4	49.1	90	55.8	0	0	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_30055	50321273	39.1	19.6	15.4	37.6	0	0	1.3	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L6 (RPL6B)  Identical to 60S ribosomal protein L6-3 (RPL6C) [Arabidopsis Thaliana] (GB:Q9C9C5); Identical to 60S ribosomal protein L6-2 (RPL6B) [Arabidopsis Thaliana] (GB:Q9C9C6); similar to 60S ribosomal protein L6 (RPL6C) [Arabido
MSGI1_24398	50321305	36	7.6	70.2	32.5	-2.2	-1.1	0	-2.1	cell wall.pectin*esterases.acetyl esterase	"pectinacetylesterase family protein  similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT4G19410.1); similar to pectinacetylesterase precursor [Vigna radiata var. radiata] (GB:CAA67728.1); contains InterPro domain Pectinacetylesteras"
MSGI1_20963	50321336	0	0	59.8	46.5	0	0	-6.9	-6.5	amino acid metabolism.degradation.aromatic aa.tyrosine	"fumarylacetoacetase, putative  similar to fumarylacetoacetase [Medicago truncatula] (GB:ABD33010.1); similar to Os02g0196800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046195.1); contains InterPro domain Fumarylacetoacetate (FAA) hydrolase; (Inte"
MSGI1_31088	50321344	49.7	45.5	17.9	20.4	0	0	1.5	0	protein.degradation.ubiquitin.E2	UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase ubiquitin conjugating enzyme Identical to SUMO-conjugating enzyme UBC9 (EC 6.3.2.-) (Ubiquitin-conjugating enzyme E2-17 kDa) (Ubiquitin-protein ligase 9) (Ubiquitin carrier protein 9) (UBCAT
MSGI1_32027	50321384	34	43.2	435.6	152.8	0	-1.5	-3.7	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_22071	50321386	8.3	6.7	47.2	9.8	0	-2.3	-2.5	0	development.unspecified	caleosin-related family protein  similar to caleosin-related family protein [Arabidopsis thaliana] (TAIR:AT1G70670.1); similar to Os06g0254700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057304.1); similar to putative ABA-induced protein [Cynodon d
MSGI1_22738	50321392	0.8	0.8	12.1	1.8	0	0	-3.9	0	cell.organisation	"dynein light chain, putative  similar to dynein light chain, putative [Arabidopsis thaliana] (TAIR:AT3G16120.1); similar to Os02g0269200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046516.1); similar to Dynein light chain, type 1 [Medicago truncat"
MSGI1_23060	50321395	28.8	88.5	38.3	44.5	1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_40407	50321408	10.3	17.5	72.4	21.5	0	-1.8	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_30332	50321427	29.6	8	19.9	15.7	-1.9	0	0	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX2 (LIPOXYGENASE 2) Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection. Identical to Lipoxygenase, chloroplast precur"
MSGI1_31898	50321439	32.2	61.6	13.1	28.4	0	0	0	1.1	protein.degradation.ubiquitin.E3.SCF.FBOX	kelch repeat-containing F-box family protein  similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G15670.1); similar to kelch repeat-containing F-box-like [Oryza sativa (japonica cultivar-group)] (GB:BAD25000.1); conta
MSGI1_26113	50321453	16.8	9.9	2	1.6	0	0	3.1	0	protein.degradation.ubiquitin	"UBQ1 (EARLY-RESPONSIVE TO DEHYDRATION 16, UBIQUITIN EXTENSION PROTEIN 1); protein binding Ubiquitin extension protein Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical"
MSGI1_28340	50321484	97	53.4	35.8	61.4	0	0	1.4	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S16 (RPS16A)  Identical to 40S ribosomal protein S16-3 (RPS16C) [Arabidopsis Thaliana] (GB:Q42340); Identical to 40S ribosomal protein S16-1 (RPS16A) [Arabidopsis Thaliana] (GB:Q9SK22); similar to 40S ribosomal protein S16 (RPS16C) [
MSGI1_24242	50321490	15.7	16.1	46.3	4.6	0	-3.3	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_79054	50321507	31.2	13.8	34.6	6.7	0	-2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_24877	50321548	83.3	36.1	28.5	56.5	-1.2	0	1.5	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S25 (RPS25B)  Identical to 40S ribosomal protein S25-2 (RPS25B) [Arabidopsis Thaliana] (GB:Q9SIK2); similar to 40S ribosomal protein S25 (RPS25E) [Arabidopsis thaliana] (TAIR:AT4G39200.1); similar to S25 ribosomal protein [Medicago t
MSGI1_21641	50321551	255.5	121.4	79.9	161.2	-1.1	1	1.7	0	protein.degradation.ubiquitin	"UBQ1 (EARLY-RESPONSIVE TO DEHYDRATION 16, UBIQUITIN EXTENSION PROTEIN 1); protein binding Ubiquitin extension protein Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical"
MSGI1_21025	50321552	31.7	20.5	2.9	5.6	0	0	3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_23133	50321557	28.6	22	86	56.6	0	0	-1.6	-1.4	amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase	GAD (Glutamate decarboxylase 1); calmodulin binding Encodes one of two isoforms of glutamate decarboxylase. Identical to Glutamate decarboxylase 1 (EC 4.1.1.15) (GAD 1) (GAD1) [Arabidopsis Thaliana] (GB:Q42521;GB:Q9FFH9); similar to glutamate decarboxyla
MSGI1_22433	50321605	54.3	46	13.1	22.7	0	0	2.1	0	redox.ascorbate and glutathione	ATMAPR2 (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 2); heme binding / transition metal ion binding  Identical to Putative steroid-binding protein 3 (AtMP3) (MP3) [Arabidopsis Thaliana] (GB:Q9SK39); similar to MSBP1 (ARABIDOPSIS
MSGI1_19383	50321622	31.7	40	150	68.7	0	-1.1	-2.2	0	stress.abiotic.drought/salt	RD22 (RESPONSIVE TO DESSICATION 22) responsive to dehydration 22 (RD22) mediated by ABA Identical to Dehydration-responsive protein RD22 precursor (RD22) [Arabidopsis Thaliana] (GB:Q08298); similar to BURP domain-containing protein [Arabidopsis thaliana]
MSGI1_21445	50321637	73.4	59.7	80.2	33.6	0	-1.3	0	0	signalling.calcium	"calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)  Identical to Putative calcium-transporting ATPase 7, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 7) (ACA7) [Arabidopsis Thaliana] (GB:O64806); simila"
MSGI1_26282	50321643	43.8	26	138.7	25.9	0	-2.4	-1.7	0	stress.abiotic.drought/salt	ERD4 (EARLY-RESPONSIVE TO DEHYDRATION 4)  similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT1G32090.1); similar to Os07g0150100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058898.1); sim
MSGI1_112866	50321655	16	11.9	1.2	0	0	0	3.7	4.6	not assigned.unknown	not assigned.unknown
MSGI1_21993	50321668	47.5	19.4	20.6	31.6	-1.3	0	1.2	0	transport.metabolite transporters at the mitochondrial membrane	dicarboxylate/tricarboxylate carrier (DTC)  similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT2G22500.1); similar to Mitochondrial carrier protein [Medicago truncatula] (GB:ABE79078.1); similar to oxoglutarate malate
MSGI1_22203	50321679	193.3	177.2	91.1	154.6	0	0	1.1	0	stress.abiotic.heat	"heat shock protein 81-4 (HSP81-4)  similar to HSP81-1 (HEAT SHOCK PROTEIN 81-1), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G52640.1); similar to HSP81-2 (EARLY-RESPONSIVE TO DEHYDRATION 8), ATP binding [Arabidopsis thaliana]"
MSGI1_24397	50321681	2	4.8	17.3	19.4	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_22349	50321697	2.6	3.5	8.9	24.4	0	0	0	-2.8	stress.biotic	"pathogenesis-related thaumatin family protein  similar to pathogenesis-related thaumatin family protein [Arabidopsis thaliana] (TAIR:AT2G17860.1); similar to Thaumatin, pathogenesis-related [Medicago truncatula] (GB:ABE77925.1); contains InterPro domain"
MSGI1_22349	50321697	2.6	3.5	8.9	24.4	0	0	0	-2.8	cell wall	"pathogenesis-related thaumatin family protein  similar to pathogenesis-related thaumatin family protein [Arabidopsis thaliana] (TAIR:AT2G17860.1); similar to Thaumatin, pathogenesis-related [Medicago truncatula] (GB:ABE77925.1); contains InterPro domain"
MSGI1_23058	50321715	154.9	89	84.7	288.5	0	1.8	0	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_27189	50321730	55.6	16.5	48	46.4	-1.8	0	0	-1.5	PS.photorespiration.glycine cleavage	"glycine cleavage system H protein, mitochondrial, putative  Identical to Probable glycine cleavage system H protein 2, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q9LQL0); similar to GDCH (Glycine decarboxylase complex H) [Arabidopsis thaliana] (T"
MSGI1_25559	50321745	14.8	14.3	68.6	12.5	0	-2.5	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_63895	50321750	1.7	1.6	8.6	14.1	0	0	0	-3.1	not assigned.unknown	not assigned.unknown
MSGI1_78511	50321781	98.9	51.6	26	31.1	0	0	1.9	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L38 (RPL38B)  Identical to 60S ribosomal protein L38 (RPL38B) [Arabidopsis Thaliana] (GB:O22860;GB:Q1WW90); similar to 60S ribosomal protein L38 (RPL38A) [Arabidopsis thaliana] (TAIR:AT2G43460.1); similar to Ribosomal L38e protein [M
MSGI1_46350	50321785	15.7	8	1.3	1.1	0	0	3.6	0	signalling.G-proteins	"AtRABA4a (Arabidopsis Rab GTPase homolog A4a); GTP binding  similar to ATGB3 (GTP-BINDING PROTEIN 3), GTP binding [Arabidopsis thaliana] (TAIR:AT4G39990.1); similar to 80A08_30 [Brassica rapa subsp. pekinensis] (GB:AAZ67615.1); contains InterPro domain S"
MSGI1_27603	50321800	17.7	27.9	66.4	44.5	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_28737	50321802	28.5	14.9	3.9	6.9	0	0	2.9	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S26 (RPS26C)  Identical to 40S ribosomal protein S26-3 (RPS26C) [Arabidopsis Thaliana] (GB:Q9LYK9); similar to 40S ribosomal protein S26 (RPS26B) [Arabidopsis thaliana] (TAIR:AT2G40590.1); similar to ribosomal protein S26 [Pisum sat
MSGI1_27188	50321807	76.5	33.9	28.9	32.5	-1.2	0	1.4	0	PS.lightreaction.photosystem I.PSI polypeptide subunits	"TMP14 (THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA) Encodes the P subunit of Photosystem I. About 25% of the TMP14 pool appeared to be phosphorylated, and this ratio is not affected by light. Contains seven phosphorylation sites on threonine residue and"
MSGI1_21296	50321894	183.3	239.1	1000.5	420.5	0	-1.3	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_34466	50321914	7.4	7.7	27.5	24.9	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_24471	50321922	107	23.8	37.6	22.4	-2.2	0	1.5	0	cell wall.pectin*esterases.acetyl esterase	"pectinacetylesterase family protein  similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT4G19410.1); similar to pectinacetylesterase precursor [Vigna radiata var. radiata] (GB:CAA67728.1); contains InterPro domain Pectinacetylesteras"
MSGI1_101490	50321946	4.2	16	26.4	7.5	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_30054	50321958	197.8	118.5	92.2	147.9	0	0	1.1	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L37a (RPL37aB)  Identical to Putative 60S ribosomal protein L37a-1 (RPL37AB) [Arabidopsis Thaliana] (GB:Q9SRK6); similar to 60S ribosomal protein L37a (RPL37aC) [Arabidopsis thaliana] (TAIR:AT3G60245.1); similar to 60S ribosomal prot
MSGI1_24712	50321969	64.2	32.8	24.5	39.9	0	0	1.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L26 (RPL26A)  Identical to 60S ribosomal protein L26-1 (RPL26A) [Arabidopsis Thaliana] (GB:P51414;GB:Q9M2W7); similar to 60S ribosomal protein L26 (RPL26B) [Arabidopsis thaliana] (TAIR:AT5G67510.1); similar to 60S ribosomal protein
MSGI1_22589	50322015	17.2	72.2	35.8	17.4	2.1	0	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_20850	50322019	44.1	52.1	30.8	60.5	0	1	0	0	RNA.transcription	"DNA-directed RNA polymerase II, putative  similar to DNA-directed RNA polymerase II, putative [Arabidopsis thaliana] (TAIR:AT2G04630.1); similar to Os07g0463100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059582.1); similar to Os03g0586600 [Oryza"
MSGI1_21111	50322058	1031.8	1252.9	483	816	0	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_24873	50322065	3	1.6	14.3	1	0	-3.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_21859	50322068	46.6	71.1	187	195.6	0	0	-2	-1.5	stress.abiotic.drought/salt	RD22 (RESPONSIVE TO DESSICATION 22) responsive to dehydration 22 (RD22) mediated by ABA Identical to Dehydration-responsive protein RD22 precursor (RD22) [Arabidopsis Thaliana] (GB:Q08298); similar to BURP domain-containing protein [Arabidopsis thaliana]
MSGI1_23212	50322071	65.9	130.2	58	123.7	0	1.1	0	0	S-assimilation.APS	"APS1 (ATP sulfurylase 3) encodes ATP sulfurylase, the first enzyme in the sulfate assimilation pathway of Arabidopsis. similar to APS3 (ATP sulfurylase 2), sulfate adenylyltransferase (ATP) [Arabidopsis thaliana] (TAIR:AT4G14680.1); similar to APS4 [Arab"
MSGI1_30975	50322074	162.5	30.5	96.9	62.2	-2.4	0	0	-1	misc.invertase/pectin methylesterase inhibitor family protein	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT3G47380.1); similar to putative ripening-related protein [Vitis vinife
MSGI1_22348	50322089	14.8	1.5	10.4	1.4	-3.3	0	0	0	lipid metabolism.FA synthesis and FA elongation.long chain fatty acid CoA ligase	"LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2) Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. similar to long-chain-fatty-acid--CoA ligase, putative / long-"
MSGI1_21787	50322103	69.5	46.9	400.1	131.2	0	-1.6	-2.5	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_26025	50322109	84.1	48	33.1	57.3	0	0	1.3	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L38 (RPL38B)  Identical to 60S ribosomal protein L38 (RPL38B) [Arabidopsis Thaliana] (GB:O22860;GB:Q1WW90); similar to 60S ribosomal protein L38 (RPL38A) [Arabidopsis thaliana] (TAIR:AT2G43460.1); similar to Ribosomal L38e protein [M
MSGI1_23282	50322112	162.3	96.7	124.7	236.1	0	0	0	-1.3	PS.calvin cyle.aldolase	"fructose-bisphosphate aldolase, putative  similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT2G21330.1); similar to plastidic aldolase NPALDP1 [Nicotiana paniculata] (GB:BAA77604.1); similar to latex plastidic aldolase-lik"
MSGI1_21923	50322130	12.5	0.1	6.6	1.2	-7	0	0	0	cell wall	GLP3 (GERMIN-LIKE PROTEIN 3); manganese ion binding / metal ion binding / nutrient reservoir Encodes a germin-like protein. Identical to Germin-like protein subfamily 3 member 3 precursor (AtGER3) (AtGLP2) (GER3) [Arabidopsis Thaliana] (GB:P94072;GB:P940
MSGI1_21923	50322130	12.5	0.1	6.6	1.2	-7	0	0	0	stress.abiotic.unspecified	GLP3 (GERMIN-LIKE PROTEIN 3); manganese ion binding / metal ion binding / nutrient reservoir Encodes a germin-like protein. Identical to Germin-like protein subfamily 3 member 3 precursor (AtGER3) (AtGLP2) (GER3) [Arabidopsis Thaliana] (GB:P94072;GB:P940
MSGI1_22127	50322138	6.9	3.4	42.7	1.4	0	-4.9	-2.6	0	stress.abiotic.cold	RCI2B (RARE-COLD-INDUCIBLE 2B)  Identical to Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B) (RCI2B) [Arabidopsis Thaliana] (GB:Q9ZNS6;GB:Q9M9K9); similar to RCI2A (RARE-COLD-INDUCIBLE 2A) [Arabidopsis thaliana] (TAIR:AT3G05
MSGI1_22127	50322138	6.9	3.4	42.7	1.4	0	-4.9	-2.6	0	stress.abiotic.drought/salt	RCI2B (RARE-COLD-INDUCIBLE 2B)  Identical to Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B) (RCI2B) [Arabidopsis Thaliana] (GB:Q9ZNS6;GB:Q9M9K9); similar to RCI2A (RARE-COLD-INDUCIBLE 2A) [Arabidopsis thaliana] (TAIR:AT3G05
MSGI1_25798	50322145	103.1	191.1	219.8	182.4	0	0	-1.1	0	protein.degradation.cysteine protease	"RD19 (RESPONSIVE TO DEHYDRATION 19); cysteine-type peptidase Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Identical to Cysteine proteinase RD19a precursor (EC 3.4.22.-) (RD19) (RD19A) [Arabidopsis Thaliana] (GB:P43296);"
MSGI1_22065	50322157	3.5	4.7	101.1	40.7	0	-1.3	-4.9	-3.1	stress.abiotic.drought/salt	RD22 (RESPONSIVE TO DESSICATION 22) responsive to dehydration 22 (RD22) mediated by ABA Identical to Dehydration-responsive protein RD22 precursor (RD22) [Arabidopsis Thaliana] (GB:Q08298); similar to BURP domain-containing protein [Arabidopsis thaliana]
MSGI1_29084	50322164	44.9	0.3	2	0.3	-7.2	0	4.5	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_29084	50322164	44.9	0.3	2	0.3	-7.2	0	4.5	0	misc.GDSL-motif lipase	ATLTL1/LTL1 (LI-TOLERANT LIPASE 1); carboxylic ester hydrolase  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G33370.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipo
MSGI1_23281	50322174	25.9	4.6	6.8	8.8	-2.5	0	1.9	0	cell wall.modification	"xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 6 precursor (EC 2.4.1.207) (At-XTH6) (XTH-6) (XTH6)"
MSGI1_24018	50322192	45.3	10	31	11.4	-2.2	0	0	0	cell wall.pectin*esterases.acetyl esterase	"pectinacetylesterase family protein  similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT4G19410.1); similar to pectinacetylesterase precursor [Vigna radiata var. radiata] (GB:CAA67728.1); contains InterPro domain Pectinacetylesteras"
MSGI1_48054	67953534	3.4	15.8	12.1	2.2	0	0	0	2.8	not assigned.unknown	not assigned.unknown
MSGI1_15326	67953546	52.4	113.2	111.1	74.8	1.1	0	-1.1	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	"phenylalanine ammonia-lyase, putative  Identical to Phenylalanine ammonia-lyase 4 (EC 4.3.1.5) (PAL4) [Arabidopsis Thaliana] (GB:Q9SS45;GB:Q53ZM8); similar to PAL2 (phenylalanine ammonia-lyase 2), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:"
MSGI1_21922	68214792	45	17.6	8.1	9.2	-1.4	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_37518	7580925	1.5	3.5	44.6	6.5	0	-2.8	-4.9	0	stress.abiotic.heat	"J8; heat shock protein binding / unfolded protein binding J8 mRNA, nuclear gene encoding plastid protein, complete Identical to Chaperone protein dnaJ 8, chloroplast precursor (AtJ8) (AtDjC8) (ATJ8) [Arabidopsis Thaliana] (GB:Q9SAG8;GB:Q9ZSN1); similar t"
MSGI1_73994	7580936	61.1	39.8	15.5	29.5	0	0	2	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S3 (RPS3C)  Identical to 40S ribosomal protein S3-3 (RPS3C) [Arabidopsis Thaliana] (GB:Q9FJA6); similar to 40S ribosomal protein S3 (RPS3A) [Arabidopsis thaliana] (TAIR:AT2G31610.1); similar to ribosomal protein S3 [Medicago truncat
MSGI1_83845	7580943	9.4	12.7	32.3	19	0	0	-1.8	0	cell wall.cell wall proteins.HRGP	hydroxyproline-rich glycoprotein family protein Encodes a protein with 13.6% proline amino acids that is predicted to localize to the cell wall. similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT5G14540.1); similar to Os05g0169400 [Or
MSGI1_107001	7580956	0.5	0.4	96.6	0.5	0	-7.6	-7.6	0	not assigned.unknown	not assigned.unknown
MSGI1_54638	7580977	13	21.1	57.5	32.6	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_102362	7580981	17.3	5.9	0	0	0	0	5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_47154	7581037	12.5	0.4	2	0.2	-5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_55413	7581109	18	12.5	36.7	5.8	0	-2.7	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_75920	7581137	12.7	1.9	32.6	1.7	0	-4.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_44169	7581276	78.8	54.6	11.8	22.3	0	0	2.7	1.3	transport.Major Intrinsic Proteins.TIP	"GAMMA-TIP (Tonoplast intrinsic protein (TIP) gamma); water channel encodes a tonoplast intrinsic protein, which functions as water channel. highly expressed in root, stem, cauline leaves and flowers. Identical to Aquaporin TIP1.1 (Tonoplast intrinsic pro"
MSGI1_44169	7581276	78.8	54.6	11.8	22.3	0	0	2.7	1.3	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_38989	7581279	60.6	28.6	2	5	-1.1	0	4.9	2.5	PS.lightreaction.photosystem II.LHC-II	"LHB1B1 (Photosystem II light harvesting complex gene 1.4); chlorophyll binding Photosystem II type I chlorophyll            a/b-binding protein similar to CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G2993"
MSGI1_56521	7581284	9.3	1.6	19.3	2	0	-3.3	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_56521	7581284	9.3	1.6	19.3	2	0	-3.3	0	0	misc.acyl transferases	"acetylesterase, putative  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G26430.1); similar to lanatoside 15-O-acetylesterase [Di (GB:AAY41077.1); similar to lanatoside 15'-O-acetylesterase [Di (GB:CAA09694.1); cont"
MSGI1_39193	7581305	56.5	35.4	22.6	55.9	0	1.3	1.3	0	protein.synthesis.elongation	"LOS1 (Low expression of osmotically responsive genes 1); translation elongation factor/ translation factor, nucleic acid binding encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene s"
MSGI1_66486	7581308	0	0	22.5	39.5	0	0	-5.5	-6.3	PS.calvin cyle.phosphoglycerate kinase	"phosphoglycerate kinase, putative  similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2); similar to PGK1 (PHOSPHOGLYCERATE KINASE 1), phosphoglycerate kinase [Arabidopsis thaliana] (TAIR:AT3G12780.1); similar to chloroplast"
MSGI1_40405	7581331	24	29.7	0.1	0	0	0	7.9	5.9	not assigned.unknown	not assigned.unknown
MSGI1_32930	7581340	35.7	27.8	11.2	21.3	0	0	1.7	0	tetrapyrrole synthesis.magnesium chelatase	GUN5 (GENOMES UNCOUPLED 5) Encodes magnesium chelatase involved in plastid-to-nucleus signal transduction. similar to Mg protoporphyrin IX chelatase [Nicotiana tabacum] (GB:AAB97152.1); similar to protoporphyrin IX:Mg Chelatase [Antirrhinum majus] (GB:CA
MSGI1_91229	7581341	0	0	21	18.3	0	0	-5.4	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_32488	7581344	81.5	47.8	1	0.6	0	0	6.3	6.3	PS.lightreaction.photosystem II.PSII polypeptide subunits	"photosystem II reaction center W (PsbW) protein-related Encodes a protein similar to photosystem II reaction center subunit W. Identical to Photosystem II reaction center W protein, chloroplast precursor (PSII 6.1 kDa protein) (PSBW) [Arabidopsis Thalian"
MSGI1_89749	7581360	3.1	0.5	22	0.2	0	-6.8	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_39713	7581364	93.9	13.6	41.1	22.5	-2.8	0	1.2	0	hormone metabolism.auxin.induced-regulated-responsive-activated	IAA16 (indoleacetic acid-induced protein 16); transcription factor early auxin-induced (IAA16) Identical to Auxin-responsive protein IAA16 (Indoleacetic acid-induced protein 16) (IAA16) [Arabidopsis Thaliana] (GB:O24407); similar to IAA7 (AUXIN RESISTANT
MSGI1_39713	7581364	93.9	13.6	41.1	22.5	-2.8	0	1.2	0	RNA.regulation of transcription.Aux/IAA family	IAA16 (indoleacetic acid-induced protein 16); transcription factor early auxin-induced (IAA16) Identical to Auxin-responsive protein IAA16 (Indoleacetic acid-induced protein 16) (IAA16) [Arabidopsis Thaliana] (GB:O24407); similar to IAA7 (AUXIN RESISTANT
MSGI1_33100	7581407	62.2	41.7	23.1	16.5	0	0	1.4	1.3	PS.lightreaction.photosystem II.LHC-II	LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding photosystem II encoding the light-harvesting chlorophyll a/b binding protein CP26 of the antenna system of the photosynthetic apparatus Identical to Chlorophyll a-b binding protein
MSGI1_80249	7581446	67.5	27.1	43	69.6	-1.3	0	0	-1.4	glycolysis.phosphoglycerate kinases	"PGK1 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase nuclear phosphoglycerate kinase (PGK1) similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2); similar to phosphoglycerate kinase, putative [Arabidopsis thaliana] (TAIR"
MSGI1_80249	7581446	67.5	27.1	43	69.6	-1.3	0	0	-1.4	PS.calvin cyle.phosphoglycerate kinase	"PGK1 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase nuclear phosphoglycerate kinase (PGK1) similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2); similar to phosphoglycerate kinase, putative [Arabidopsis thaliana] (TAIR"
MSGI1_12019	81485459	11	18.8	3.8	2.8	0	0	0	2.7	stress.abiotic.heat	AT-HSFB2B (Arabidopsis thaliana heat shock transcription factor B2B); transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor B-2b (AtHsfB2b) (Heat shock factor protein 7) (HSF 7) (Heat s
MSGI1_12019	81485459	11	18.8	3.8	2.8	0	0	0	2.7	"RNA.regulation of transcription.HSF,Heat-shock transcription factor family"	AT-HSFB2B (Arabidopsis thaliana heat shock transcription factor B2B); transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor B-2b (AtHsfB2b) (Heat shock factor protein 7) (HSF 7) (Heat s
MSGI1_27697	81485506	29.9	15.1	9.5	16.2	0	0	1.7	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_27697	81485506	29.9	15.1	9.5	16.2	0	0	1.7	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_10776	81485509	561.7	384.6	137.9	260.4	0	0	2	0	protein.synthesis.elongation	elongation factor 1-alpha / EF-1-alpha  Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A) (A4) [Arabidopsis Thaliana] (GB:P13905); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar
MSGI1_36489	F7SND4003F010C	38.3	44.7	47.7	280.6	0	2.6	0	-2.7	not assigned.unknown	not assigned.unknown
MSGI1_111029	F7SND4003F0IJX	2.1	3.2	25.5	42.7	0	0	-3.6	-3.7	"RNA.regulation of transcription.ARF, Auxin Response Factor family"	"ARF2 (AUXIN RESPONSE FACTOR 2); transcription factor Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons."
MSGI1_111029	F7SND4003F0IJX	2.1	3.2	25.5	42.7	0	0	-3.6	-3.7	hormone metabolism.auxin.signal transduction	"ARF2 (AUXIN RESPONSE FACTOR 2); transcription factor Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons."
MSGI1_114220	F7SND4003F0OYH	27.9	10.2	44.4	17	0	-1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_90506	F7SND4003F1339	21.6	11.1	76.3	32.7	0	-1.2	-1.8	-1.6	protein.degradation.cysteine protease	XCP1 (XYLEM CYSTEINE PEPTIDASE 1); cysteine-type peptidase tracheary element vacuolar protein Identical to Xylem cysteine proteinase 1 precursor (EC 3.4.22.-) (AtXCP1) (XCP1) [Arabidopsis Thaliana] (GB:O65493); similar to XCP2 (XYLEM CYSTEINE PEPTIDASE 2
MSGI1_123341	F7SND4003F1HHJ	28.7	45.4	157.3	74.6	0	-1.1	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_98890	F7SND4003F1U86	31.4	74	139.3	125.9	1.2	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_51506	F7SND4003F29PR	53.8	48.3	64.6	25.2	0	-1.4	0	0	transport.Major Intrinsic Proteins.PIP	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1;3); water channel a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein le
MSGI1_57341	F7SND4003F2Y88	175.6	183.3	549.5	309.7	0	0	-1.6	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	"PSBR (photosystem II subunit R) Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gen"
MSGI1_47153	F7SND4003F2ZVQ	16.1	17.2	49.5	12.7	0	-2	-1.6	0	fermentation.aldehyde dehydrogenase	ALDH7B4 (ALDEHYDE DEHYDROGENASE 7B4); 3-chloroallyl aldehyde dehydrogenase Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 7B4 (EC 1.2.1.3) (Antiquitin-1) (Turgor- responsive ALDH) (ALDH7B4) [Arabidopsis Thaliana] (GB:Q9SYG7;GB:Q546B7); simila
MSGI1_111739	F7SND4003F376B	23.1	12.2	30.3	6.5	0	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_81392	F7SND4003F3B8U	11.2	5.8	53.9	7	0	-2.9	-2.3	0	stress.abiotic.drought/salt	ERD4 (EARLY-RESPONSIVE TO DEHYDRATION 4)  similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT1G32090.1); similar to Os07g0150100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058898.1); sim
MSGI1_91226	F7SND4003F3FIY	0	0	17.2	15.1	0	0	-5.1	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_113458	F7SND4003F3HZY	8.8	10.3	34.2	42.7	0	0	-2	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_29837	F7SND4003F3TBA	66.8	157.2	66.5	95.8	1.2	0	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.C4H	ATC4H (CINNAMATE-4-HYDROXYLASE) Encodes a cinnamate-4-hydroxylase. Identical to Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic acid 4- hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) (CYP73A5) [Arabidopsis Thaliana] (GB:P92994;GB:O049
MSGI1_41119	F7SND4003F3X24	163.3	2	68.5	0.4	-6.4	-7.4	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_80248	F7SND4003F42P0	25	37.3	227.7	69.6	0	-1.7	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_62094	F7SND4003F43AU	75.6	70	84	152.5	0	0	0	-1.1	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.3 (HTR8) [Arabidopsis Thaliana] (GB:P59169;GB:Q6NR95); similar to histone H3.2 [Arabidopsis thaliana] (TAIR:AT4G40030.3); similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G40040.2); similar to disease-resistent-re
MSGI1_30449	F7SND4003F4EDI	31.4	28.6	10	14.7	0	0	1.7	0	cell wall	TUB3 (Tubulin beta-3); structural molecule encodes tubulin beta-2/beta-3 chain Identical to Tubulin beta-2/beta-3 chain (TUBB3) [Arabidopsis Thaliana] (GB:P29512); similar to TUB7 (tubulin beta-7 chain) [Arabidopsis thaliana] (TAIR:AT2G29550.1); similar
MSGI1_30449	F7SND4003F4EDI	31.4	28.6	10	14.7	0	0	1.7	0	cell.organisation	TUB3 (Tubulin beta-3); structural molecule encodes tubulin beta-2/beta-3 chain Identical to Tubulin beta-2/beta-3 chain (TUBB3) [Arabidopsis Thaliana] (GB:P29512); similar to TUB7 (tubulin beta-7 chain) [Arabidopsis thaliana] (TAIR:AT2G29550.1); similar
MSGI1_57936	F7SND4003F4KQO	117.8	39.8	59.8	85.7	-1.6	0	1	-1.1	not assigned.unknown	not assigned.unknown
MSGI1_50781	F7SND4003F4RPQ	11.5	11.7	83.6	102.3	0	0	-2.9	-3.1	protein.degradation.subtilases	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_50781	F7SND4003F4RPQ	11.5	11.7	83.6	102.3	0	0	-2.9	-3.1	cell wall	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_79047	F7SND4003F4TIO	3.1	4.5	20.1	2.2	0	-3.2	-2.7	0	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G28440.1); similar to leucine-rich repeat receptor-like protein kinase [Pyru"
MSGI1_43990	F7SND4003F4ZOU	13.7	57.5	67.2	30.6	2.1	-1.1	-2.3	0	major CHO metabolism.degradation.starch.starch cleavage	"BMY3 (beta-amylase 3); beta-amylase putative beta-amylase BMY3 (BMY3) similar to CT-BMY (BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to beta-amylase [Glycine max] (GB:CAI39245.1); contains InterPro domain Glycoside hy"
MSGI1_114007	F7SND4003F55HH	16.1	5	15.9	1.6	0	-3.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_116054	F7SND4003F5C9K	8.8	11.8	36.2	28.7	0	0	-2	0	amino acid metabolism.degradation.serine-glycine-cysteine group.glycine	"glycine dehydrogenase (decarboxylating), putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative  Identical to Glycine dehydrogenase [decarboxylating], mitochondrial precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine"
MSGI1_81390	F7SND4003F5CU2	57.4	1.5	16.1	2.7	-5.3	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_117517	F7SND4003F5MLC	0	0	12.9	5.5	0	0	-4.7	0	amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase	"GAD2 (GLUTAMATE DECARBOXYLASE 2); calmodulin binding glutamate decarboxylase (GAD2) Identical to Glutamate decarboxylase 2 (EC 4.1.1.15) (GAD 2) (GAD2) [Arabidopsis Thaliana] (GB:Q42472); similar to GAD (Glutamate decarboxylase 1), calmodulin binding [Ar"
MSGI1_79663	F7SND4003F5VAX	20.6	0.4	23.7	0.2	-5.7	-6.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_61064	F7SND4003F64NH	38.8	0.2	13.3	0	-7.6	-4.7	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_123604	F7SND4003F6786	0	0	55.4	35.6	0	0	-6.8	-6.2	stress.abiotic.heat	"heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)  Identical to Heat shock cognate 70 kDa protein 3 (Hsc70.3) (HSC70-3) [Arabidopsis Thaliana] (GB:O65719;GB:Q42345); similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR"
MSGI1_46768	F7SND4003F6CYR	41.2	60.5	85.3	661.8	0	3	-1	-3.5	major CHO metabolism.degradation.starch.starch cleavage	"ATBETA-AMY (BETA-AMYLASE); beta-amylase cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. Identical to Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (BMY"
MSGI1_35236	F7SND4003F6EB9	11.9	15.5	45.4	24.4	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_115589	F7SND4003F6KNB	7.3	16.6	75.5	17.5	0	-2.1	-3.4	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_115589	F7SND4003F6KNB	7.3	16.6	75.5	17.5	0	-2.1	-3.4	0	cell wall	"SUS2 (SUCROSE SYNTHASE 2); UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups Encodes a putative sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). Induced"
MSGI1_115589	F7SND4003F6KNB	7.3	16.6	75.5	17.5	0	-2.1	-3.4	0	major CHO metabolism.degradation.sucrose.Susy	"SUS2 (SUCROSE SYNTHASE 2); UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups Encodes a putative sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). Induced"
MSGI1_34137	F7SND4003F6L5R	0.3	0	11.7	12.9	0	0	-5.3	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_44389	F7SND4003F6LCQ	53.8	18.7	1800.5	215.4	-1.5	-3.1	-5.1	-3.5	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT5G05960.1); similar to Os01g0849000 [Oryza sativa (japonica
MSGI1_70348	F7SND4003F6OP9	51.2	106.4	44.3	65.5	1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_43003	F7SND4003F6QTR	12.1	0.1	0.4	0	-6.9	0	4.9	0	cell wall	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G11420.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain Protein of unknown function DUF642
MSGI1_113455	F7SND4003F75IA	2.6	0.9	12.8	17.2	0	0	0	-4.3	protein.synthesis.elongation	"EMB2726 (EMBRYO DEFECTIVE 2726); translation elongation factor  similar to translation elongation factor Ts (EF-Ts), putative [Arabidopsis thaliana] (TAIR:AT4G11120.1); similar to Os12g0541500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066956.1);"
MSGI1_100598	F7SND4003F78OB	89.4	67.4	200.8	98.7	0	0	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_41684	F7SND4003F7GO9	101.4	56.9	44.9	36.9	0	0	1.2	0	cell wall.precursor synthesis.UXS	"UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE); catalytic Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be cytosolic by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hem"
MSGI1_58239	F7SND4003F7J7S	0	0	27.4	41.4	0	0	-5.8	-6.4	not assigned.unknown	not assigned.unknown
MSGI1_39895	F7SND4003F7T1L	185	92.8	83.9	44.2	0	0	1.1	1.1	not assigned.unknown	not assigned.unknown
MSGI1_31086	F7SND4003F7WNB	0	0	9.9	11.9	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_59792	F7SND4003F7Z1K	37	24.3	12.5	9.4	0	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_34314	F7SND4003F8114	20.1	16.5	48.2	42.7	0	0	0	-1.4	amino acid metabolism.synthesis.aspartate family.methionine	"ATCIMS (COBALAMIN-INDEPENDENT METHIONINE SYNTHASE); 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase Encodes a cytosolic cobalamin-independent methionine synthase, involved in methionine regeneration via the act"
MSGI1_56217	F7SND4003F8353	0	0	11.3	13.6	0	0	-4.5	-4.8	C1-metabolism.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_56217	F7SND4003F8353	0	0	11.3	13.6	0	0	-4.5	-4.8	amino acid metabolism.synthesis.serine-glycine-cysteine group.glycine.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_56217	F7SND4003F8353	0	0	11.3	13.6	0	0	-4.5	-4.8	PS.photorespiration.serine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_109998	F7SND4003F843X	105	48.3	67.3	61.5	-1.1	0	0	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"RPS1 (ribosomal protein S1); RNA binding  similar to S1 RNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G71720.1); similar to 30S ribosomal protein S1, chloroplast precursor (CS1) (GB:P29344); contains InterPro domain Nucleic acid-b"
MSGI1_34135	F7SND4003F85HY	85.3	67.6	40.2	55.2	0	0	1.1	0	cell wall	"subtilase family protein  similar to AIR3 (Auxin-Induced in Root cultures 3), subtilase [Arabidopsis thaliana] (TAIR:AT2G04160.1); similar to subtilisin-like protease [Triticum aestivum] (GB:CAJ75644.1); similar to subtilisin-like protease [Glycine max]"
MSGI1_34135	F7SND4003F85HY	85.3	67.6	40.2	55.2	0	0	1.1	0	protein.degradation.subtilases	"subtilase family protein  similar to AIR3 (Auxin-Induced in Root cultures 3), subtilase [Arabidopsis thaliana] (TAIR:AT2G04160.1); similar to subtilisin-like protease [Triticum aestivum] (GB:CAJ75644.1); similar to subtilisin-like protease [Glycine max]"
MSGI1_58559	F7SND4003F85NP	64.1	30.4	20.5	12.6	-1.1	0	1.6	0	cell wall.degradation.pectate lyases and polygalacturonases	pectate lyase family protein  Identical to Probable pectate lyase 1 precursor (EC 4.2.2.2) (Pectate lyase A1) [Arabidopsis Thaliana] (GB:Q940Q1;GB:O23017;GB:O23666); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G48900.1); simil
MSGI1_30133	F7SND4003F8L03	0.5	0.4	16.5	35.9	0	0	-5	-6.5	not assigned.unknown	not assigned.unknown
MSGI1_52783	F7SND4003F8V9N	96.6	67.6	49.6	74.5	0	0	1	0	protein.folding	HSC70-1 (heat shock cognate 70 kDa protein 1); ATP binding encodes a member of heat shock protein 70 family. Identical to Heat shock cognate 70 kDa protein 1 (Hsc70.1) (HSC70-1) [Arabidopsis Thaliana] (GB:P22953;GB:Q9LZ52); similar to HSP70 (heat shock p
MSGI1_41682	F7SND4003F8YHQ	26.6	56.6	38.7	52.2	1.1	0	0	0	hormone metabolism.auxin.signal transduction	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_41682	F7SND4003F8YHQ	26.6	56.6	38.7	52.2	1.1	0	0	0	transport.misc	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_41682	F7SND4003F8YHQ	26.6	56.6	38.7	52.2	1.1	0	0	0	transport.amino acids	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_30447	F7SND4003F92Z9	54.9	28.1	22.7	40.2	0	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_34313	F7SND4003F9B0P	69.3	24.4	34.9	33.3	-1.5	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_73527	F7SND4003F9K4X	21.1	28.2	66.2	64.1	0	0	-1.6	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_54630	F7SND4003FJ7WC	20.7	16.4	51.6	70.9	0	0	-1.3	-2.1	OPP.oxidative PP.6-phosphogluconolactonase	EMB2024 (EMBRYO DEFECTIVE 2024); catalytic  similar to glucosamine/galactosamine-6-phosphate isomerase family protein [Arabidopsis thaliana] (TAIR:AT3G49360.1); similar to putative 6-phosphogluconolactonase [Elaeis guineensis] (GB:AAO26315.1); contains In
MSGI1_116995	F7SND4003FJJ1T	188.2	137.8	73.4	153.1	0	1.1	1.4	0	redox.ascorbate and glutathione.ascorbate	"DHAR1 (DEHYDROASCORBATE REDUCTASE); glutathione dehydrogenase (ascorbate)  similar to DHAR2, glutathione dehydrogenase (ascorbate) [Arabidopsis thaliana] (TAIR:AT1G75270.1); similar to dehydroascorbate reductase-like protein [Solanum tuberosum] (GB:ABA46"
MSGI1_88416	F7SND4003FJQBY	49.7	21.9	23.8	25.8	-1.2	0	0	0	amino acid metabolism.synthesis.serine-glycine-cysteine group.glycine.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_88416	F7SND4003FJQBY	49.7	21.9	23.8	25.8	-1.2	0	0	0	PS.photorespiration.serine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_88416	F7SND4003FJQBY	49.7	21.9	23.8	25.8	-1.2	0	0	0	C1-metabolism.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_46572	F7SND4003FK2AZ	5.3	8.6	25.8	20	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_52497	F7SND4003FKJ5W	22.3	6.6	121.5	8.4	0	-3.9	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_61436	F7SND4003FKP0Q	15.4	11.9	57.5	17.9	0	-1.7	-1.9	0	N-metabolism.ammonia metabolism.glutamate synthase.ferredoxin dependent	GLU1 (FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1) Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression in leaves is induced by light and sucrose. Proposed to be involved in photorespiration and nitroge
MSGI1_50069	F7SND4003FKQVG	0.1	0	21.8	14	0	0	-7.8	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_30050	F7SND4003FKTO1	16.2	9.9	20.9	3.7	0	-2.5	0	0	cell wall	"BXL1 (BETA-XYLOSIDASE 1); hydrolase, hydrolyzing O-glycosyl compounds encodes a beta-xylosidase located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase fa"
MSGI1_48258	F7SND4003FKZIQ	54.3	0.3	9.2	2.2	-7.5	0	2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_95738	F7SND4003FL1QK	157.2	1.5	71.9	2	-6.7	-5.2	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_46138	F7SND4003FL5KH	50.1	53.6	73.2	30	0	-1.3	0	0	cell wall.cellulose synthesis.cellulose synthase	"CESA8 (CELLULASE SYNTHASE 8); cellulose synthase/ transferase, transferring glycosyl groups Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content,"
MSGI1_54892	F7SND4003FL7JC	11	12.8	49.1	11.5	0	-2.1	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_43797	F7SND4003FLFB8	22.6	0.5	2.7	0.7	-5.5	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_56519	F7SND4003FLI4E	61.2	27.6	17.9	45.7	-1.1	1.4	1.8	0	protein.synthesis.misc ribososomal protein	"40S ribosomal protein S15 (RPS15D)  Identical to 40S ribosomal protein S15-4 (RPS15D) [Arabidopsis Thaliana] (GB:Q9FY64); Identical to 40S ribosomal protein S15-1 (RPS15A) [Arabidopsis Thaliana] (GB:Q08112); similar to RPS15 (RIBOSOMAL PROTEIN S15), stru"
MSGI1_45477	F7SND4003FM6E8	72.7	47.2	22.2	31.1	0	0	1.7	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_45477	F7SND4003FM6E8	72.7	47.2	22.2	31.1	0	0	1.7	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_117769	F7SND4003FM75M	8.5	13.2	29.7	16.4	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_117515	F7SND4003FNNM3	94.6	78.9	42.2	104.1	0	1.3	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_79041	F7SND4003FNPYS	18.6	25.3	47.1	17.2	0	-1.5	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_113448	F7SND4003FNSOO	69.4	175.7	199.8	249.3	1.3	0	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_116049	F7SND4003FNT5V	39.7	5.8	49.4	4.7	-2.8	-3.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_41117	F7SND4003FOFV0	31.9	19.9	9.7	12	0	0	1.7	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BXL2 (BETA-XYLOSIDASE 2); hydrolase, hydrolyzing O-glycosyl compounds encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. similar t"
MSGI1_35945	F7SND4003FOUUV	6.1	3.9	25.7	11.1	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_111272	F7SND4003FOXYJ	49.7	23.1	17	23.1	0	0	1.5	0	cell wall.precursor synthesis.UGD	"UDP-glucose 6-dehydrogenase, putative  similar to ATUGD1/UGD1 (UDP-glucose dehydrogenase 1), UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G26570.1); similar to UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G29360.2); similar"
MSGI1_33758	F7SND4003FP2S0	131.8	65.8	88.2	73	-1	0	0	0	transport.p- and v-ATPases	VMA10 (VACUOLAR MEMBRANE ATPASE 10) Subunit G of the vacuolar membrane ATPAse complex Identical to Vacuolar ATP synthase subunit G 1 (EC 3.6.3.14) (V-ATPase G subunit 1) (Vacuolar proton pump G subunit 1) (VATG1) [Arabidopsis Thaliana] (GB:O82628); simil
MSGI1_55697	F7SND4003FP9M9	116.3	129.8	28.8	139.8	0	2.3	2	0	not assigned.unknown	not assigned.unknown
MSGI1_34131	F7SND4003FPNFD	0.9	2.2	4.9	19.8	0	0	0	-3.2	not assigned.unknown	not assigned.unknown
MSGI1_48475	F7SND4003FPNJ9	19.3	48.1	96.7	82.8	1.3	0	-2.3	0	stress.abiotic.heat	ATJ3 (Arabidopsis thaliana DnaJ homologue 3) homologous to the co-chaperon DNAJ protein from E coli Identical to Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) (ATJ3) [Arabidopsis Thaliana] (GB:Q94AW8;GB:O22663;GB:Q42530); similar to ATJ2 (Arabidopsis thaliana
MSGI1_37075	F7SND4003FPQWK	110.6	60.3	15.5	21.5	0	0	2.8	1.5	cell.organisation	TUA6 (tubulin alpha-6 chiain) Encodes an alpha-tubulin isoform required for right handed helical growth. Identical to Tubulin alpha-6 chain (TUBA6) [Arabidopsis Thaliana] (GB:P29511); Identical to Tubulin alpha-2/alpha-4 chain (TUBA4) [Arabidopsis Thalia
MSGI1_45680	F7SND4003FQ5PQ	71.7	32.3	30.1	54.5	-1.2	0	1.3	0	cell wall.precursor synthesis.AXS	AXS1 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 1) Encodes UDP-d-apiose/UDP-d-xylose synthase that requires NAD+ for enzymatic activity and is strongly inhibited by UDP-d-galacturonate. similar to AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2) [Arabidopsis thalian
MSGI1_58554	F7SND4003FQ8MH	37.9	51.9	15.2	20.2	0	0	0	1.4	not assigned.unknown	not assigned.unknown
MSGI1_46136	F7SND4003FQIGY	62.5	34.3	17.2	47.1	0	1.5	1.9	0	protein.synthesis.misc ribososomal protein	"40S ribosomal protein S15 (RPS15D)  Identical to 40S ribosomal protein S15-4 (RPS15D) [Arabidopsis Thaliana] (GB:Q9FY64); Identical to 40S ribosomal protein S15-1 (RPS15A) [Arabidopsis Thaliana] (GB:Q08112); similar to RPS15 (RIBOSOMAL PROTEIN S15), stru"
MSGI1_90495	F7SND4003FQSEA	53.6	30.7	11.3	20.8	0	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_28879	F7SND4003FQVTS	19	0.5	14.1	0.6	-5.2	-4.6	0	0	major CHO metabolism.degradation.sucrose.invertases.vacuolar	"ATBETAFRUCT4/VAC-INV (VACUOLAR INVERTASE); beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds  similar to beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar [Arabidopsis thaliana] (TAIR:AT1G62660.1); similar to"
MSGI1_73525	F7SND4003FR205	102.3	43.8	189.3	64.1	-1.2	-1.6	0	0	transport.metal	CAX3 (cation exchanger 3); cation:cation antiporter  Identical to Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger 3) (Ca(2+)/H(+) antiporter CAX3) (CAX3) [Arabidopsis Thaliana] (GB:Q93Z81;GB:O65022;GB:Q0WUY4;GB:Q9LKW8); similar to CAX1 (CATION
MSGI1_73525	F7SND4003FR205	102.3	43.8	189.3	64.1	-1.2	-1.6	0	0	transport.calcium	CAX3 (cation exchanger 3); cation:cation antiporter  Identical to Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger 3) (Ca(2+)/H(+) antiporter CAX3) (CAX3) [Arabidopsis Thaliana] (GB:Q93Z81;GB:O65022;GB:Q0WUY4;GB:Q9LKW8); similar to CAX1 (CATION
MSGI1_38503	F7SND4003FR9XE	24.5	35.7	65.2	59.3	0	0	-1.4	0	transport.p- and v-ATPases.H+-exporting ATPase	"AHA1 (PLASMA MEMBRANE PROTON ATPASE); ATPase plasma membrane proton ATPase Identical to ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1) (AHA1) [Arabidopsis Thaliana] (GB:P20649;GB:O64626); similar to AHA3 (Arabidopsis H(+)-ATPase 3), ATPase ["
MSGI1_34867	F7SND4003FRE4M	258.2	308	721.8	1016.5	0	0	-1.5	-1.7	protein.degradation.ubiquitin.ubiquitin	UBQ10 (POLYUBIQUITIN 10); protein binding One of five polyubiquitin genes in A. thaliana.  These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiqu
MSGI1_123965	F7SND4003FREBK	65.5	16.1	18.6	4.9	-2	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_54625	F7SND4003FREQY	49.6	49.5	113.3	59.2	0	0	-1.2	0	amino acid metabolism.degradation.serine-glycine-cysteine group.glycine	"glycine dehydrogenase (decarboxylating), putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative  Identical to Putative glycine dehydrogenase [decarboxylating] 2, mitochondrial precursor (EC 1.4.4.2) (Glycine decarboxylas"
MSGI1_122685	F7SND4003FROYQ	30.3	20.8	7.6	22.4	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_27869	F7SND4003FRQS7	27.4	7	17.2	14.5	-2	0	0	0	lipid metabolism.lipid degradation.lysophospholipases.glycerophosphodiester phosphodiesterase	glycerophosphoryl diester phosphodiesterase family protein  similar to glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] (TAIR:AT5G55480.1); similar to glycerophosphoryl diester phosphodiesterase family protein [Arabidopsi
MSGI1_33621	F7SND4003FRTOP	16.7	1.4	8.3	1.9	-3.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_123215	F7SND4003FRYIZ	46.3	1.4	6	0.9	-5	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_123151	F7SND4003FS44K	84.8	22.1	16.2	6.2	-1.9	0	2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_57646	F7SND4003FSBEL	1	1.3	14.3	9	0	0	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_112246	F7SND4003FSGN4	0	0	9.3	14	0	0	0	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_84469	F7SND4003FSJGD	9.8	30.5	17.1	23.7	1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_38978	F7SND4003FSNVU	21.7	35.3	79.2	45.7	0	0	-1.9	0	secondary metabolism.simple phenols	"IRX12/LAC4 (laccase 4); copper ion binding / oxidoreductase Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem ph"
MSGI1_65332	F7SND4003FT7XV	32.9	48.3	80.4	33.4	0	-1.3	-1.3	0	protein.targeting.secretory pathway.vacuole	GAMMA-VPE (Vacuolar processing enzyme gamma); cysteine-type endopeptidase Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types
MSGI1_116046	F7SND4003FTB82	104.9	32.8	80	242.5	-1.7	1.6	0	-2.9	not assigned.unknown	not assigned.unknown
MSGI1_123597	F7SND4003FTBW7	64.4	14.7	39.5	18.3	-2.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_31334	F7SND4003FTCQT	2	5.1	18	7.3	0	0	-3.2	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY11 (WRKY DNA-binding protein 11); transcription factor member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae. Identical to Probable WRKY transcription factor 11 (WRKY DNA-binding protein 11) (
MSGI1_38800	F7SND4003FTNXS	22.4	5.5	6	8.8	-2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_66076	F7SND4003FTUEU	49	93	17.8	56.6	0	1.7	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_42270	F7SND4003FTXHL	53.6	61.2	291.6	85.1	0	-1.8	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_50544	F7SND4003FTXJO	64.1	61.5	209.6	103.3	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_43365	F7SND4003FU872	0	0	48.5	35.7	0	0	-6.6	-6.2	not assigned.unknown	not assigned.unknown
MSGI1_112611	F7SND4003FUD74	42.4	91.4	59.4	47.1	1.1	0	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	PAL1 (PHE AMMONIA LYASE 1); phenylalanine ammonia-lyase encodes a protein similar to phenylalanine ammonia-lyase Identical to Phenylalanine ammonia-lyase 1 (EC 4.3.1.5) (PAL1) [Arabidopsis Thaliana] (GB:P35510;GB:Q94AN1;GB:Q9ZQD6); similar to PAL2 (pheny
MSGI1_61431	F7SND4003FUPZM	6.9	7	16.4	1.9	0	-3.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_41678	F7SND4003FUZIQ	27	13.4	5.9	10.7	0	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_116375	F7SND4003FV1RS	3.2	6.4	31.6	12.8	0	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_79655	F7SND4003FV8DF	117.1	23.4	28.2	28.2	-2.3	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_117152	F7SND4003FVE5D	7	12.4	28.6	14.2	0	0	-2	0	cell wall.modification	"XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2); hydrolase, acting on glycosyl bonds member of Glycoside Hydrolase Family 16 Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 28 precursor (EC 2.4.1.207) (At-XTH28) (XTH-28) (XTH28)"
MSGI1_79038	F7SND4003FVGH7	36.5	8.3	6.7	10.7	-2.1	0	2.4	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_94205	F7SND4003FVPVZ	4	1.2	43.1	2.2	0	-4.3	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_42480	F7SND4003FVRTR	18.9	52.4	114	87.9	1.5	0	-2.6	0	stress.abiotic.heat	"HSP70B (heat shock protein 70B); ATP binding  similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR:AT3G12580.1); similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); s"
MSGI1_84463	F7SND4003FW0P2	74.5	0.7	12.4	0.5	-6.7	-4.6	2.6	0	cell wall.modification	"EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4); hydrolase, acting on glycosyl bonds EXGT-A4, endoxyloglucan transferase, Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 5 precursor (EC 2.4.1.207) (At-XTH5) (XTH-5) (XTH5) [Arabidopsis Tha"
MSGI1_44384	F7SND4003FW9L9	24.2	30.3	63	36.7	0	0	-1.4	0	protein.degradation.aspartate protease	aspartyl protease family protein  similar to pepsin A [Arabidopsis thaliana] (TAIR:AT1G62290.2); similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT4G04460.1); similar to aspartic protease (GB:AAB03108.1); similar to Aspartic prot
MSGI1_88412	F7SND4003FWFFJ	250.6	176.3	323.6	562.2	0	0	0	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_35388	F7SND4003FWXE0	2.3	6.1	16.6	9.1	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_85697	F7SND4003FX8EL	28.2	5.7	3.9	9.1	-2.3	0	2.9	0	cell wall.modification	"ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3) putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thal"
MSGI1_33095	F7SND4003FXDQU	13.4	13.6	46.5	10.4	0	-2.2	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_79652	F7SND4003FY5H6	56.9	120.2	181.1	174.6	1.1	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_40394	F7SND4003FYCIZ	3.7	1.7	36	8.2	0	-2.1	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_98885	F7SND4003FYFY5	0.5	1.2	25	19.7	0	0	-5.6	-4	not assigned.unknown	not assigned.unknown
MSGI1_69883	F7SND4003FZ6X5	84.7	132.3	38.5	66.4	0	0	1.1	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_95734	F7SND4003FZ7TW	46.2	8.9	19.4	25.6	-2.4	0	1.3	0	cell wall	"endo-1,4-beta-glucanase, putative / cellulase, putative  Identical to Endoglucanase 19 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 19) [Arabidopsis Thaliana] (GB:Q8L7I0;GB:O82513); similar to endo-1,4-beta-glucanase, putative / cellulase, putative [A"
MSGI1_95734	F7SND4003FZ7TW	46.2	8.9	19.4	25.6	-2.4	0	1.3	0	"cell wall.degradation.cellulases and beta -1,4-glucanases"	"endo-1,4-beta-glucanase, putative / cellulase, putative  Identical to Endoglucanase 19 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 19) [Arabidopsis Thaliana] (GB:Q8L7I0;GB:O82513); similar to endo-1,4-beta-glucanase, putative / cellulase, putative [A"
MSGI1_95734	F7SND4003FZ7TW	46.2	8.9	19.4	25.6	-2.4	0	1.3	0	cell wall	"endo-1,4-beta-glucanase, putative / cellulase, putative  Identical to Endoglucanase 19 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 19) [Arabidopsis Thaliana] (GB:Q8L7I0;GB:O82513); similar to endo-1,4-beta-glucanase, putative / cellulase, putative [A"
MSGI1_95734	F7SND4003FZ7TW	46.2	8.9	19.4	25.6	-2.4	0	1.3	0	"misc.gluco-, galacto- and mannosidases"	"endo-1,4-beta-glucanase, putative / cellulase, putative  Identical to Endoglucanase 19 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 19) [Arabidopsis Thaliana] (GB:Q8L7I0;GB:O82513); similar to endo-1,4-beta-glucanase, putative / cellulase, putative [A"
MSGI1_111381	F7SND4003FZHJ3	6.7	16.2	42.3	11.8	0	-1.8	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_46567	F7SND4003FZM1E	0	0	53.3	133.7	0	1.3	-6.7	-8.1	not assigned.unknown	not assigned.unknown
MSGI1_64259	F7SND4003FZQ9J	43.4	18.5	12	20.8	0	0	1.9	0	cell.organisation	"TUB6 (BETA-6 TUBULIN) Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment. Identical to Tubulin beta-6 chain (Beta-6 tubulin) (TUBB6) [Arabidopsis Thaliana] (GB:P29514); similar to TUB3 (Tubulin beta-3), st"
MSGI1_89084	F7SND4003FZTD6	13	17.2	83.7	28.8	0	-1.5	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_113222	F7SND4003FZTGR	56.4	1.1	29.3	3.4	-5.7	-3.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_45679	F7SND4003FZXFB	6.5	2.5	25.8	2	0	-3.7	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_80230	F7SND4003G0096	57.9	19.1	15.5	22.1	-1.6	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_108994	F7SND4003G0FC5	7.1	1.5	21	4.1	0	-2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_91211	F7SND4003G0QZ6	21.2	5.4	51	29	0	0	-1.3	-2.4	protein.degradation.cysteine protease	"XCP2 (XYLEM CYSTEINE PEPTIDASE 2); cysteine-type peptidase/ peptidase  Identical to Xylem cysteine proteinase 2 precursor (EC 3.4.22.-) (AtXCP2) (XCP2) [Arabidopsis Thaliana] (GB:Q9LM66;GB:Q9SYQ2); similar to XCP1 (XYLEM CYSTEINE PEPTIDASE 1), cysteine-t"
MSGI1_35095	F7SND4003G0WB2	0.5	0.4	17.6	12.6	0	0	-5.1	-5	not assigned.unknown	not assigned.unknown
MSGI1_67317	F7SND4003G0Y0V	49.5	40	30.3	73.3	0	1.3	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_115573	F7SND4003G24LE	101.3	2.6	31.5	4.9	-5.3	-2.7	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_84460	F7SND4003G28Z2	76.6	69.5	171.7	90.6	0	0	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_57934	F7SND4003G2E48	9.2	15.2	32.2	14.1	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_27782	F7SND4003G2QB6	28.7	44.4	100.1	62.5	0	0	-1.8	0	transport.p- and v-ATPases	"AHA6 (ARABIDOPSIS H(+)-ATPASE 6); ATPase  Identical to ATPase 6, plasma membrane-type (EC 3.6.3.6) (Proton pump 6) (AHA6) [Arabidopsis Thaliana] (GB:Q9SH76); similar to AHA8 (ARABIDOPSIS H(+)-ATPASE 8), ATPase [Arabidopsis thaliana] (TAIR:AT3G42640.1); s"
MSGI1_83825	F7SND4003G2TFD	24.2	21.9	48.6	74.5	0	0	0	-1.8	signalling.calcium	CAM3 (CALMODULIN 3); calcium ion binding encodes a calmodulin Identical to Calmodulin-7 (CaM-7) (CAM7) [Arabidopsis Thaliana] (GB:P59220); Identical to Calmodulin-6 (CaM-6) (CAM6) [Arabidopsis Thaliana] (GB:Q03509); Identical to Calmodulin-2/3/5 (CaM-2/3
MSGI1_90484	F7SND4003G35B9	0	0	13.4	13.8	0	0	-4.7	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_50294	F7SND4003G3JAE	94.8	59.9	41.2	48	0	0	1.2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L27 (RPL27C)  Identical to 60S ribosomal protein L27-3 (RPL27C) [Arabidopsis Thaliana] (GB:P51419;GB:O23354); similar to 60S ribosomal protein L27 (RPL27B) [Arabidopsis thaliana] (TAIR:AT3G22230.1); similar to Ribosomal protein L27e;
MSGI1_63879	F7SND4003G3ORU	18.4	105.1	101.9	240.3	2.5	1.2	-2.5	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_47793	F7SND4003G3QTF	8.5	48.5	3.7	32.7	2.5	3.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_40928	F7SND4003G3VO6	144.9	145.9	271.9	102.7	0	-1.4	0	0	cell wall	"chitinase  similar to POM1 (POM-POM1), chitinase [Arabidopsis thaliana] (TAIR:AT1G05850.1); similar to chitinase-like protein [Gossypium hirsutum] (GB:AAQ56599.1); contains InterPro domain Glycoside hydrolase, family 19; (InterPro:IPR000726)"
MSGI1_40928	F7SND4003G3VO6	144.9	145.9	271.9	102.7	0	-1.4	0	0	stress.biotic	"chitinase  similar to POM1 (POM-POM1), chitinase [Arabidopsis thaliana] (TAIR:AT1G05850.1); similar to chitinase-like protein [Gossypium hirsutum] (GB:AAQ56599.1); contains InterPro domain Glycoside hydrolase, family 19; (InterPro:IPR000726)"
MSGI1_53284	F7SND4003G3WQ2	107.3	114.7	170.7	75.2	0	-1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_38975	F7SND4003G44Z0	86.6	349.4	47.2	297.4	2	2.7	0	0	metal handling	"auxin/aluminum-responsive protein, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43830.1); similar to aluminum-induced [Brassica napus] (GB:BAA25999.1); contains domain ASPARAGINE SYNTHETASE (PTHR11772); contains domain no descrip"
MSGI1_37215	F7SND4003G498P	74.3	39.8	36.6	52.4	0	0	1	0	protein.synthesis.initiation	"EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E); RNA binding / translation initiation factor eIF4E protein.  The cum1 mutation affects the local spreading of CMV within the inoculated leaf, delaying accumulation of cucumber mosaic virus coat protein."
MSGI1_116148	F7SND4003G49K1	0	0	269.5	695	0	1.4	-9.1	-10.4	not assigned.unknown	not assigned.unknown
MSGI1_108992	F7SND4003G49U0	26.3	58.5	31.7	31.7	1.2	0	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	"phenylalanine ammonia-lyase, putative  Identical to Phenylalanine ammonia-lyase 4 (EC 4.3.1.5) (PAL4) [Arabidopsis Thaliana] (GB:Q9SS45;GB:Q53ZM8); similar to PAL2 (phenylalanine ammonia-lyase 2), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:"
MSGI1_31889	F7SND4003G4BNW	30.6	55.9	75.2	76.2	0	0	-1.3	0	protein.degradation.cysteine protease	"RD19 (RESPONSIVE TO DEHYDRATION 19); cysteine-type peptidase Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Identical to Cysteine proteinase RD19a precursor (EC 3.4.22.-) (RD19) (RD19A) [Arabidopsis Thaliana] (GB:P43296);"
MSGI1_74898	F7SND4003G4DKN	22.4	5.6	20.9	26.7	0	0	0	-2.3	not assigned.unknown	not assigned.unknown
MSGI1_48469	F7SND4003G4NR0	59	121.1	62.2	109.9	1	0	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL	"4CL1 (4-COUMARATE:COA LIGASE 1); 4-coumarate-CoA ligase encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate.  The catalytic e"
MSGI1_33619	F7SND4003G4VS6	15.2	19.3	71.8	30.6	0	-1.2	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_78503	F7SND4003G4XHZ	0.1	0	16.6	18.7	0	0	-7.4	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_48669	F7SND4003G52W9	39.6	21.3	9.1	24.1	0	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_79647	F7SND4003G577G	44	17.4	19.5	20.6	-1.3	0	0	0	cell wall.cellulose synthesis.cellulose synthase	"CESA6 (CELLULASE SYNTHASE 6); transferase, transferring glycosyl groups Encodes a cellulase synthase.  Mutants are defective in hypocotyl elongation dark-grown plants. Normal hypocotyl elongation is restored in plants grown in white, blue or red light. I"
MSGI1_59448	F7SND4003G5ER6	26.4	12.1	44.8	10.5	0	-2.1	0	0	protein.degradation.subtilases	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_59448	F7SND4003G5ER6	26.4	12.1	44.8	10.5	0	-2.1	0	0	cell wall	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_27601	F7SND4003G5J2S	49.5	40.4	23.9	59.4	0	1.3	0	0	amino acid metabolism.synthesis.branched chain group.common	"ketol-acid reductoisomerase  Identical to Ketol-acid reductoisomerase, chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) [Arabidopsis Thaliana] (GB:Q05758;GB:Q42559); similar to Ketol"
MSGI1_115707	F7SND4003G5JSO	21.5	32.9	56.6	20.1	0	-1.5	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_69881	F7SND4003G5RIK	3.3	1.3	13.9	16.2	0	0	0	-3.6	PS.calvin cyle.FBPase	"fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative  Identical to Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D- fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase)"
MSGI1_64254	F7SND4003G5RIR	22.6	63.5	58.3	67	1.5	0	-1.4	0	"cell wall.degradation.cellulases and beta -1,4-glucanases"	glycosyl hydrolase family 5 protein / cellulase family protein  similar to glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] (TAIR:AT4G28320.1); similar to putative (1-4)-beta-mannan endohydrolase [Oryza sativa (japoni
MSGI1_64254	F7SND4003G5RIR	22.6	63.5	58.3	67	1.5	0	-1.4	0	"misc.gluco-, galacto- and mannosidases"	glycosyl hydrolase family 5 protein / cellulase family protein  similar to glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] (TAIR:AT4G28320.1); similar to putative (1-4)-beta-mannan endohydrolase [Oryza sativa (japoni
MSGI1_30445	F7SND4003G5WI1	29.8	18.5	44.3	65.7	0	0	0	-1.8	cell wall	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_30445	F7SND4003G5WI1	29.8	18.5	44.3	65.7	0	0	0	-1.8	protein.degradation.subtilases	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_115142	F7SND4003G61XB	0	0	10.2	12.6	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_50771	F7SND4003G65JS	1.8	2.6	39.3	102.5	0	1.4	-4.4	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_40746	F7SND4003G67NY	0.1	0.1	14.1	21.9	0	0	-7.1	-7.8	cell wall	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_40746	F7SND4003G67NY	0.1	0.1	14.1	21.9	0	0	-7.1	-7.8	protein.degradation.subtilases	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_52486	F7SND4003G6DCN	27.9	8.4	6.2	4.9	-1.7	0	2.2	0	amino acid metabolism.synthesis.aspartate family.methionine.S-adenosylmethionine synthetase	SAM1 (S-adenosylmethionine synthetase 1); methionine adenosyltransferase encodes a S-adenosylmethionine synthetase. SAM1 is regulated by protein S-nitrosylation. The covalent binding of nitric oxide (NO) to the Cys114 residue inhibits the enzyme activity
MSGI1_112087	F7SND4003G6LAI	75.4	19.8	24.1	29.8	-1.9	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_54052	F7SND4003G6U8U	4.4	3.4	26.9	14.6	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_60716	F7SND4003G6UMK	102.7	58.7	127.5	43.6	0	-1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_114398	F7SND4003G72R1	21.3	29.5	22.3	106.5	0	2.3	0	-1.9	major CHO metabolism.degradation.starch.starch cleavage	"ATBETA-AMY (BETA-AMYLASE); beta-amylase cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. Identical to Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (BMY"
MSGI1_34127	F7SND4003G7E3V	14.1	38.6	16.4	44.1	1.5	1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_35092	F7SND4003G7KHP	14.1	0.2	12.4	0.8	-6.1	-4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_43567	F7SND4003G7PN0	21.3	50.7	11.7	23.5	1.3	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_43567	F7SND4003G7PN0	21.3	50.7	11.7	23.5	1.3	0	0	0	cell wall	"SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups Encodes a protein with sucrose synthase activity (SUS4). similar to SUS1 (SUCROSE SYNTHASE 1), UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TA"
MSGI1_43567	F7SND4003G7PN0	21.3	50.7	11.7	23.5	1.3	0	0	0	major CHO metabolism.degradation.sucrose.Susy	"SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups Encodes a protein with sucrose synthase activity (SUS4). similar to SUS1 (SUCROSE SYNTHASE 1), UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TA"
MSGI1_95730	F7SND4003G7RK3	73.4	36.1	13.6	26.6	-1	0	2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_37860	F7SND4003G7SWU	0	0	18.1	37.8	0	0	-5.2	-6.2	not assigned.unknown	not assigned.unknown
MSGI1_112359	F7SND4003G7TJA	0	0	17.9	12.9	0	0	-5.2	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_40744	F7SND4003G7WL7	9.9	7.1	32.4	20.1	0	0	-1.7	0	cell wall.precursor synthesis.GMD	"GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1); GDP-mannose 4,6-dehydratase GDP-D-mannose 4,6-dehydratase Identical to GDP-mannose 4,6 dehydratase 1 (EC 4.2.1.47) (GDP-D-mannose dehydratase 1) (GMD 1) (GMD1) [Arabidopsis Thaliana] (GB:Q9SNY3); similar to MUR1 (M"
MSGI1_74894	F7SND4003G841T	28.9	37.1	7.5	14.4	0	0	1.9	0	protein.degradation.subtilases	"subtilase family protein  similar to AIR3 (Auxin-Induced in Root cultures 3), subtilase [Arabidopsis thaliana] (TAIR:AT2G04160.1); similar to subtilisin-like protease [Triticum aestivum] (GB:CAJ75644.1); similar to subtilisin-like protease [Glycine max]"
MSGI1_74894	F7SND4003G841T	28.9	37.1	7.5	14.4	0	0	1.9	0	cell wall	"subtilase family protein  similar to AIR3 (Auxin-Induced in Root cultures 3), subtilase [Arabidopsis thaliana] (TAIR:AT2G04160.1); similar to subtilisin-like protease [Triticum aestivum] (GB:CAJ75644.1); similar to subtilisin-like protease [Glycine max]"
MSGI1_38137	F7SND4003G84ZM	1.7	1.5	9.4	13.8	0	0	0	-3.2	not assigned.unknown	not assigned.unknown
MSGI1_99693	F7SND4003G8BZL	148.1	72.2	236.9	179.7	-1	0	0	-1.3	protein.degradation.cysteine protease	"XCP2 (XYLEM CYSTEINE PEPTIDASE 2); cysteine-type peptidase/ peptidase  Identical to Xylem cysteine proteinase 2 precursor (EC 3.4.22.-) (AtXCP2) (XCP2) [Arabidopsis Thaliana] (GB:Q9LM66;GB:Q9SYQ2); similar to XCP1 (XYLEM CYSTEINE PEPTIDASE 1), cysteine-t"
MSGI1_64252	F7SND4003G8FFW	82.9	51.3	111.3	28.7	0	-2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_94198	F7SND4003G8WIY	3.8	7.7	21.6	17.9	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_80221	F7SND4003G907L	7	5.3	27.3	58.1	0	1.1	-2	-3.5	cell wall	dehydration-responsive family protein  similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G18030.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G10440.1); similar to dehydration-responsi
MSGI1_80221	F7SND4003G907L	7	5.3	27.3	58.1	0	1.1	-2	-3.5	stress.abiotic.drought/salt	dehydration-responsive family protein  similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G18030.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G10440.1); similar to dehydration-responsi
MSGI1_112849	F7SND4003G9CKI	11.9	9.3	0.6	1.5	0	0	4.3	0	not assigned.unknown	not assigned.unknown
MSGI1_114397	F7SND4003G9LRC	27.6	70.3	17.9	24	1.3	0	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_51489	F7SND4003G9MZE	20.1	0.1	1.5	0.8	-7.7	0	3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_32588	F7SND4003G9N38	257.2	77.7	186	90.4	-1.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_79643	F7SND4003G9N6U	41.5	28.8	41	65.4	0	0	0	-1.2	transport.p- and v-ATPases.H+-transporting two-sector ATPase	"(VACUOLAR ATP SYNTHASE SUBUNIT D); hydrogen ion transporting ATP synthase, rotational mechanism / hydrogen ion transporting ATPase, rotational mechanism  Identical to Vacuolar ATP synthase subunit D (EC 3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pum"
MSGI1_37682	F7SND4003G9UEJ	6.7	0.1	11.4	0.1	0	-6.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_92643	F7SND4003G9WRT	1.6	1.6	90.5	36.4	0	-1.3	-5.8	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_106981	F7SND4003GA6XW	3.2	5.1	20	5.1	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_48465	F7SND4003GAACV	59.2	50.3	65.3	106.9	0	0	0	-1.1	PS.lightreaction.photosystem II.PSII polypeptide subunits	PSBY (photosystem II BY) PsbY precursor (psbY) mRNA. This single nuclear gene is imported into the chloroplasts where it is processed into two integral membrane proteins with identical topology (PsbY-1 and PsbY-2). The protein appears to bind manganese b
MSGI1_49817	F7SND4003GAAQ9	15.1	0.5	4.1	3.9	-4.9	0	0	0	stress.abiotic.unspecified	GLP1 (GERMIN-LIKE PROTEIN 1); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP1) Identical to Germin-like protein subfamily 3 member 1 precursor (AtGER1) (At-GERM1) (AtGLP1) (GLP1) [Arabidopsis Thaliana] (GB:P94040;
MSGI1_49817	F7SND4003GAAQ9	15.1	0.5	4.1	3.9	-4.9	0	0	0	cell wall	GLP1 (GERMIN-LIKE PROTEIN 1); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP1) Identical to Germin-like protein subfamily 3 member 1 precursor (AtGER1) (At-GERM1) (AtGLP1) (GLP1) [Arabidopsis Thaliana] (GB:P94040;
MSGI1_30674	F7SND4003GABCQ	8.6	9	46.3	41.9	0	0	-2.4	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_57012	F7SND4003GAC9B	8.6	8.8	128.6	148.4	0	0	-3.9	-4.1	secondary metabolism.phenylpropanoids.lignin biosynthesis.COMT	ATOMT1 (O-METHYLTRANSFERASE 1) A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay.  AtOMT1 (At5g54160) encodes a flavonol 3?-O-methyltransferase that is highly active towards quercetin and myr
MSGI1_96507	F7SND4003GAF4J	0.7	0.6	7.6	12.3	0	0	0	-4.4	secondary metabolism.isoprenoids.mevalonate pathway.acetyl-CoA C-acyltransferase	"acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative  Identical to Probable acetyl-CoA acetyltransferase, cytosolic 2 (EC 2.3.1.9) (Cytosolic acetoacetyl-CoA thiolase 2) (Thiolase 2) [Arabidopsis Thaliana] (GB:Q9FIK7;GB:Q3E710;GB:Q3"
MSGI1_96507	F7SND4003GAF4J	0.7	0.6	7.6	12.3	0	0	0	-4.4	amino acid metabolism.degradation.aspartate family.lysine	"acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative  Identical to Probable acetyl-CoA acetyltransferase, cytosolic 2 (EC 2.3.1.9) (Cytosolic acetoacetyl-CoA thiolase 2) (Thiolase 2) [Arabidopsis Thaliana] (GB:Q9FIK7;GB:Q3E710;GB:Q3"
MSGI1_96507	F7SND4003GAF4J	0.7	0.6	7.6	12.3	0	0	0	-4.4	amino acid metabolism.degradation.aromatic aa.tryptophan	"acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative  Identical to Probable acetyl-CoA acetyltransferase, cytosolic 2 (EC 2.3.1.9) (Cytosolic acetoacetyl-CoA thiolase 2) (Thiolase 2) [Arabidopsis Thaliana] (GB:Q9FIK7;GB:Q3E710;GB:Q3"
MSGI1_36635	F7SND4003GAJEA	34.8	55.3	79	40.7	0	0	-1.2	0	stress.abiotic.unspecified	GLP3 (GERMIN-LIKE PROTEIN 3); manganese ion binding / metal ion binding / nutrient reservoir Encodes a germin-like protein. Identical to Germin-like protein subfamily 3 member 3 precursor (AtGER3) (AtGLP2) (GER3) [Arabidopsis Thaliana] (GB:P94072;GB:P940
MSGI1_34455	F7SND4003GATQ8	10.9	9.3	37.2	28.8	0	0	-1.8	0	cell wall.cellulose synthesis.cellulose synthase	"CESA3 (CELLULASE SYNTHASE 3); cellulose synthase/ transferase, transferring glycosyl groups cellulose synthase. Involved in defense signaling. Identical to Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC 2.4.1.12) (AtCesA-3) (Constitutive expr"
MSGI1_115805	F7SND4003GAZG2	44.6	1.1	3.4	0.4	-5.3	0	3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_38311	F7SND4003GB43R	24.5	28.8	58.5	28.3	0	0	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_109984	F7SND4003GBRD8	4.4	3.9	10.8	22.6	0	0	0	-2.5	not assigned.unknown	not assigned.unknown
MSGI1_116371	F7SND4003GCD8P	102.9	39.4	34.5	34.9	-1.4	0	1.6	0	cell.organisation	"ACT3 (ACTIN 3); structural constituent of cytoskeleton Member of the Actin gene family. Expressed in mature pollen. Identical to Actin-1/3 (ACT3) [Arabidopsis Thaliana] (GB:P10671;GB:P53493;GB:Q9M351); similar to ACT11 (ACTIN-11), structural constituent"
MSGI1_59779	F7SND4003GCDG7	80.3	77	102.4	47.3	0	-1.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_35937	F7SND4003GCGKO	5.1	8.5	197.3	7.9	0	-4.6	-5.3	0	minor CHO metabolism.myo-inositol.InsP Synthases	"inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative  Identical to Probable inositol-3-phosphate synthase isozyme 3 (EC 5.5.1.4) (Myo- inositol-1-phosphate synthase 3) (MI-1-P synthase 3) (IPS"
MSGI1_64247	F7SND4003GCQDL	61.2	29.3	90.8	38.8	-1.1	-1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_43983	F7SND4003GCQRK	61	37.2	89.5	9.1	0	-3.3	0	2	not assigned.unknown	not assigned.unknown
MSGI1_48046	F7SND4003GD55B	0.1	0.1	16.7	14.2	0	0	-7.4	-7.1	cell.organisation	TUB4 (tubulin beta-4 chain) beta tubulin gene Identical to Tubulin beta-4 chain (Beta-4 tubulin) (TUBB4) [Arabidopsis Thaliana] (GB:P24636;GB:Q9FKV4); similar to TUB7 (tubulin beta-7 chain) [Arabidopsis thaliana] (TAIR:AT2G29550.1); similar to TUB6 (BETA
MSGI1_48046	F7SND4003GD55B	0.1	0.1	16.7	14.2	0	0	-7.4	-7.1	cell wall	TUB4 (tubulin beta-4 chain) beta tubulin gene Identical to Tubulin beta-4 chain (Beta-4 tubulin) (TUBB4) [Arabidopsis Thaliana] (GB:P24636;GB:Q9FKV4); similar to TUB7 (tubulin beta-7 chain) [Arabidopsis thaliana] (TAIR:AT2G29550.1); similar to TUB6 (BETA
MSGI1_29936	F7SND4003GD9L1	15	57.6	131.6	152.9	1.9	0	-3.1	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_28070	F7SND4003GDM5B	10.7	17	44.2	33.7	0	0	-2	0	transport.p- and v-ATPases.H+-exporting ATPase	"AHA3 (Arabidopsis H(+)-ATPase 3); ATPase member of Plasma membrane H+-ATPase family Identical to ATPase 3, plasma membrane-type (EC 3.6.3.6) (Proton pump 3) (AHA3) [Arabidopsis Thaliana] (GB:P20431); similar to AHA1 (PLASMA MEMBRANE PROTON ATPASE), ATPas"
MSGI1_35787	F7SND4003GDYKD	205	2.3	102.8	1.6	-6.5	-6	1	0	cell wall	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25460.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain Protein of unknown function DUF642
MSGI1_98880	F7SND4003GE104	6.5	5.4	15.1	22.3	0	0	0	-2	not assigned.unknown	not assigned.unknown
MSGI1_76399	F7SND4003GE91Y	62.9	18.9	56.9	29.3	-1.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_31781	F7SND4003GEDWR	182.3	2.4	132.1	3.5	-6.2	-5.2	0	0	cell wall	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25460.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain Protein of unknown function DUF642
MSGI1_33226	F7SND4003GEG9S	54	41.3	73.7	171.9	0	1.2	0	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_112085	F7SND4003GEIWI	13.5	0.6	0.8	0	-4.5	0	4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_114499	F7SND4003GEOUA	77.4	74	103.5	194.8	0	0	0	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_25940	F7SND4003GER7K	16.2	17.8	53.6	20.1	0	-1.4	-1.7	0	amino acid metabolism.degradation.serine-glycine-cysteine group.glycine	"glycine dehydrogenase (decarboxylating), putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative  Identical to Glycine dehydrogenase [decarboxylating], mitochondrial precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine"
MSGI1_45468	F7SND4003GETPW	245.7	70.3	75.7	144.9	-1.8	0	1.7	-1	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_55684	F7SND4003GEVKZ	54.9	22.4	30.5	29.7	-1.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_50764	F7SND4003GEWVH	27	5.3	31.4	5.4	-2.3	-2.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_115705	F7SND4003GFEXQ	20.2	83.1	34.1	65.4	2	0.9	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL	"4CL5 (4-COUMARATE:COA LIGASE 5); 4-coumarate-CoA ligase The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order:  p-coumaric acid, caffeic acid, 5-OH-ferul"
MSGI1_87706	F7SND4003GFHBH	10.9	3.4	33.4	2.4	0	-3.8	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_51726	F7SND4003GFKXP	1.5	4.5	23.2	11.7	0	0	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_39698	F7SND4003GFLZW	32.4	17	66.3	43.9	0	0	0	-1.4	transport.p- and v-ATPases.H+-transporting two-sector ATPase	"AVA-P1 (vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 1); ATPase/ hydrogen ion transporting ATPase, rotational mechanism vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p1) Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 4 (EC 3."
MSGI1_112456	F7SND4003GFW7N	114.2	245.7	1955.8	669.7	1.1	-1.5	-4.1	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_51486	F7SND4003GFZFX	140.7	137.5	70.4	82.6	0	0	1	0	protein.synthesis.misc ribososomal protein	"RPS18C (S18 RIBOSOMAL PROTEIN); structural constituent of ribosome encodes a ribosomal protein S18C, a constituent of the small subunit of the ribosomal complex Identical to 40S ribosomal protein S18 (RPS18C) [Arabidopsis Thaliana] (GB:P34788;GB:Q94K22);"
MSGI1_64244	F7SND4003GG99Q	13.6	3.1	49.3	5	0	-3.3	-1.9	0	stress.abiotic.cold	"COR413-PM1 (cold regulated 413 plasma membrane 1) encodes an alpha form of a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. similar to"
MSGI1_33752	F7SND4003GGR37	33.8	1.6	11.3	3.9	-4.4	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_75898	F7SND4003GGZIE	2.4	5.2	32.9	21.5	0	0	-3.8	0	stress.abiotic.heat	HSP70 (heat shock protein 70); ATP binding  similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G
MSGI1_45467	F7SND4003GH3HX	73.2	19.7	22.6	9.2	-1.9	0	1.7	0	misc.peroxidases	peroxidase encodes peroxidase involved in the lignification of tracheary elements (TE) in roots Identical to Peroxidase 66 precursor (EC 1.11.1.7) (Atperox P66) (ATP27a) (PER66) [Arabidopsis Thaliana] (GB:Q9LT91;GB:P93727); similar to peroxidase 64 (PER6
MSGI1_45467	F7SND4003GH3HX	73.2	19.7	22.6	9.2	-1.9	0	1.7	0	cell wall	peroxidase encodes peroxidase involved in the lignification of tracheary elements (TE) in roots Identical to Peroxidase 66 precursor (EC 1.11.1.7) (Atperox P66) (ATP27a) (PER66) [Arabidopsis Thaliana] (GB:Q9LT91;GB:P93727); similar to peroxidase 64 (PER6
MSGI1_56504	F7SND4003GHEPA	21.7	26.3	74.7	82.1	0	0	-1.8	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_103248	F7SND4003GHGZ1	0.1	0	30	20.2	0	0	-8.2	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_93386	F7SND4003GHH6O	0	0	5.5	12.6	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_54350	F7SND4003GHS95	17.2	16.8	71.2	34.6	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_42996	F7SND4003GI1SM	23.2	0.5	7.4	2.5	-5.5	0	0	0	secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase	"CHS (CHALCONE SYNTHASE); naringenin-chalcone synthase Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids.  Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of"
MSGI1_97245	F7SND4003GI24D	0	0	8.1	13.2	0	0	0	-4.7	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G04790.1); similar to zinc finger family protein, putative, expressed [Oryza sativa (japonica cultivar-gro"
MSGI1_105053	F7SND4003GICU4	18.1	9.4	3.1	6.4	0	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_51724	F7SND4003GIFSX	225.8	100.6	124.5	157.6	-1.2	0	0	0	PS.calvin cyle.GAP	GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase Encodes one of the two subunits forming the photosynthetic glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and as such a constituent of the supramolecula
MSGI1_24969	F7SND4003GIKB9	179.7	79.2	80.4	124.2	-1.2	0	1.2	0	protein.synthesis.misc ribososomal protein	"STV1 (SHORT VALVE1); structural constituent of ribosome RPL24B encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B. Mutants showed defects in"
MSGI1_21637	F7SND4003GIKF9	48.1	21.2	10.7	9.7	0	0	2.2	0	cell wall	DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); protein binding Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. Identical to DNA-damage-repair/toleration protein DRT100 precursor (DRT100) [Arabidopsis Thaliana] (GB:Q00874;G
MSGI1_21637	F7SND4003GIKF9	48.1	21.2	10.7	9.7	0	0	2.2	0	DNA.repair	DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); protein binding Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. Identical to DNA-damage-repair/toleration protein DRT100 precursor (DRT100) [Arabidopsis Thaliana] (GB:Q00874;G
MSGI1_66895	F7SND4003GIPY3	7.8	89.2	80.9	78.4	3.5	0	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_73977	F7SND4003GISNN	14.9	25.4	56.1	13.7	0	-2	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_32585	F7SND4003GIWWY	24.7	8.3	113	6.6	0	-4.1	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_43360	F7SND4003GJA41	2.6	1.6	84.6	161.1	0	0	-5	-6.7	not assigned.unknown	not assigned.unknown
MSGI1_113873	F7SND4003GJE0E	1.3	0.7	73.8	237.9	0	1.7	-5.8	-8.4	PS.calvin cyle.GAP	"GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase Encodes chloroplast localized glyceraldehyde-3-phosphate dehydrogenase. Identical to Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor (EC"
MSGI1_44996	F7SND4003GJG2E	43.3	31.1	14.1	28.5	0	0	1.6	0	cell.organisation	TUB3 (Tubulin beta-3); structural molecule encodes tubulin beta-2/beta-3 chain Identical to Tubulin beta-2/beta-3 chain (TUBB3) [Arabidopsis Thaliana] (GB:P29512); similar to TUB7 (tubulin beta-7 chain) [Arabidopsis thaliana] (TAIR:AT2G29550.1); similar
MSGI1_22965	F7SND4003GJI92	91.9	67	32.2	61.5	0	0	1.5	0	cell wall	TUB3 (Tubulin beta-3); structural molecule encodes tubulin beta-2/beta-3 chain Identical to Tubulin beta-2/beta-3 chain (TUBB3) [Arabidopsis Thaliana] (GB:P29512); similar to TUB7 (tubulin beta-7 chain) [Arabidopsis thaliana] (TAIR:AT2G29550.1); similar
MSGI1_22965	F7SND4003GJI92	91.9	67	32.2	61.5	0	0	1.5	0	cell.organisation	TUB3 (Tubulin beta-3); structural molecule encodes tubulin beta-2/beta-3 chain Identical to Tubulin beta-2/beta-3 chain (TUBB3) [Arabidopsis Thaliana] (GB:P29512); similar to TUB7 (tubulin beta-7 chain) [Arabidopsis thaliana] (TAIR:AT2G29550.1); similar
MSGI1_50290	F7SND4003GJOEZ	17.2	21.6	27.2	49.5	0	0	0	-1.2	protein.targeting.nucleus	AT-IMP (Arabidopsis thaliana importin alpha); protein transporter Encodes importin alpha involved in nuclear import. Identical to Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) (KAP1) [Arabidopsis Thaliana] (GB:Q96321;GB:O49599;GB:O81
MSGI1_38969	F7SND4003GJPNP	0	0	25.6	41.1	0	0	-5.7	-6.4	cell wall	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_38969	F7SND4003GJPNP	0	0	25.6	41.1	0	0	-5.7	-6.4	protein.degradation.subtilases	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_66894	F7SND4003GJSQY	10.4	5	34.2	7.8	0	-2.1	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_29168	F7SND4003GJX2W	307.3	211.5	156.9	233	0	0	1	0	glycolysis.aldolase	"fructose-bisphosphate aldolase, putative  similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT2G36460.1); similar to Fructose-bisphosphate aldolase, class-I [Medicago truncatula] (GB:ABE84500.1); contains InterPro domain Fr"
MSGI1_26852	F7SND4003GK46D	0.5	0.5	24	50.7	0	1.1	-5.6	-6.7	not assigned.unknown	not assigned.unknown
MSGI1_54347	F7SND4003GKAQR	86.1	71.9	63.5	146.1	0	1.2	0	-1	not assigned.unknown	not assigned.unknown
MSGI1_123065	F7SND4003GKP8P	15.4	20.8	44.8	24.5	0	0	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_112082	F7SND4003GKQEQ	9.4	4	30.8	16.2	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_46757	F7SND4003GKUAU	18.9	32.1	27.2	61.2	0	1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_36072	F7SND4003GKXMV	161.3	99.6	72.8	92.9	0	0	1.1	0	stress.abiotic.heat	"SHD (SHEPHERD); ATP binding encodes an ortholog of GRP94, an ER-resident HSP90-like protein and is involved in regulation of meristem size and organization. Single and double mutant analyses suggest that SHD may be required for the correct folding and/or"
MSGI1_113872	F7SND4003GL05X	0	0	29.9	15.1	0	0	-5.9	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_113425	F7SND4003GL1WB	63	38.1	102.9	25.5	0	-2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_25797	F7SND4003GLE8A	0	0	11.6	11.6	0	0	-4.5	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_56501	F7SND4003GLU2W	0	0	14.8	24.3	0	0	-4.9	-5.6	not assigned.unknown	not assigned.unknown
MSGI1_54346	F7SND4003GLXVE	100.5	71.3	54.6	118.6	0	1.1	0	0	stress.abiotic.heat	"heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)  Identical to Heat shock cognate 70 kDa protein 3 (Hsc70.3) (HSC70-3) [Arabidopsis Thaliana] (GB:O65719;GB:Q42345); similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR"
MSGI1_29079	F7SND4003GMBGO	45.4	111.5	65	64.5	1.3	0	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL	"4CL2 (4-coumarate:CoA ligase 2); 4-coumarate-CoA ligase encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order:  p-co"
MSGI1_31887	F7SND4003GME5E	28	3	29.2	13.8	-3.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_65317	F7SND4003GMOQ2	4.1	6	38.6	28.7	0	0	-3.2	-2.3	not assigned.unknown	not assigned.unknown
MSGI1_43784	F7SND4003GN1KN	0.4	0.7	16.9	4.8	0	0	-5.4	0	not assigned.unknown	not assigned.unknown
MSGI1_75894	F7SND4003GND5I	6.2	6.4	16	26.3	0	0	0	-2	protein.folding	HSC70-1 (heat shock cognate 70 kDa protein 1); ATP binding encodes a member of heat shock protein 70 family. Identical to Heat shock cognate 70 kDa protein 1 (Hsc70.1) (HSC70-1) [Arabidopsis Thaliana] (GB:P22953;GB:Q9LZ52); similar to HSP70 (heat shock p
MSGI1_89074	F7SND4003GNJZS	14.2	23.3	31.2	54	0	0	0	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_115439	F7SND4003GNKOF	0.3	0.9	174.4	96.1	0	0	-9.2	-6.7	not assigned.unknown	not assigned.unknown
MSGI1_34120	F7SND4003GNOYI	30.1	36.4	85.4	181.3	0	1.1	-1.5	-2.3	"misc.gluco-, galacto- and mannosidases"	"glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT2G44450.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE86373.1); contains InterPro domain 6-phospho-beta-galacto"
MSGI1_63859	F7SND4003GNQ5Z	15.5	2.4	41.2	9.1	0	-2.2	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_42475	F7SND4003GNS21	72.3	63.6	36.6	25.5	0	0	1	1.3	amino acid metabolism.synthesis.serine-glycine-cysteine group.glycine.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_42475	F7SND4003GNS21	72.3	63.6	36.6	25.5	0	0	1	1.3	PS.photorespiration.serine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_42475	F7SND4003GNS21	72.3	63.6	36.6	25.5	0	0	1	1.3	C1-metabolism.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_84453	F7SND4003GNWFE	2	0.4	9	12.8	0	0	0	-5	not assigned.unknown	not assigned.unknown
MSGI1_113212	F7SND4003GO1GN	26.9	3.7	8.3	3.1	-2.9	0	0	0	cell wall.pectin*esterases.misc	pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT3G49220.1); similar to pectinesterase inhibitor [Lycoris aurea] (GB:ABJ99595.1); similar to Pectinesterase; Pectinesterase inhibitor [Medicago truncatu
MSGI1_69873	F7SND4003GODAX	29.1	16.4	9.3	10.7	0	0	1.6	0	TCA / org. transformation.other organic acid transformaitons.atp-citrate lyase	ACLB-2 (ATP-citrate lyase B-2) One of the two genes encoding subunit B of the cytosolic enzyme ATP Citrate Lyase (ACL) similar to ACLB-1 (ATP-citrate lyase B-1) [Arabidopsis thaliana] (TAIR:AT3G06650.1); similar to ATP citrate lyase a-subunit [Lupinus al
MSGI1_113211	F7SND4003GP21T	2.5	4.3	27.8	7	0	-2	-3.5	0	transport.amino acids	amino acid transporter family protein  similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT2G39130.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABE77592.1); contains InterPro domain Amino acid/p
MSGI1_103243	F7SND4003GP3CB	32.6	8.4	49.3	9.4	-2	-2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_96502	F7SND4003GP65O	25.7	16.1	62.2	17.4	0	-1.8	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_80210	F7SND4003GPPX5	0.2	0	102.3	87.8	0	0	-9	-7.5	not assigned.unknown	not assigned.unknown
MSGI1_74884	F7SND4003GPT15	49.5	16.1	55.3	23.1	-1.6	-1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_86373	F7SND4003GQEUC	13	5.9	34	8.5	0	-2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_115436	F7SND4003GQI62	31.7	10.3	8.7	8.3	-1.6	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_100573	F7SND4003GQK8T	23.2	29	5.3	15.8	0	0	2.1	0	transport.misc	"permease, putative  Identical to Nucleobase-ascorbate transporter 6 (AtNAT6) (NAT6) [Arabidopsis Thaliana] (GB:Q27GI3;GB:Q3E869;GB:Q94CA7;GB:Q9FM07); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:AT5G49990.1); similar to"
MSGI1_90474	F7SND4003GQKFO	42	67.7	58.9	222	0	1.9	0	-1.7	major CHO metabolism.degradation.starch.starch cleavage	"ATBETA-AMY (BETA-AMYLASE); beta-amylase cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. Identical to Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (BMY"
MSGI1_61419	F7SND4003GQY6V	0.1	0.1	3.5	10.2	0	0	0	-6.7	protein.synthesis.misc ribososomal protein	40S ribosomal protein S8 (RPS8B)  Identical to 40S ribosomal protein S8-2 (RPS8B) [Arabidopsis Thaliana] (GB:Q9FIF3); similar to 40S ribosomal protein S8 (RPS8A) [Arabidopsis thaliana] (TAIR:AT5G20290.1); similar to ribosomal protein S8 [Oryza sativa (jap
MSGI1_91199	F7SND4003GQY7F	8.4	10.5	19.1	38.2	0	0	0	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_38490	F7SND4003GR1FH	3.8	3.2	39.7	47.6	0	0	-3.4	-3.9	not assigned.unknown	not assigned.unknown
MSGI1_53271	F7SND4003GR3QK	4.2	1.5	6.6	14.2	0	0	0	-3.2	not assigned.unknown	not assigned.unknown
MSGI1_60085	F7SND4003GR7Q6	91.5	47.2	88.8	37.9	0	-1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_33222	F7SND4003GR9FE	245.3	289.1	114.2	180.7	0	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_36633	F7SND4003GRB3Z	39.3	46.3	26.5	83.5	0	1.7	0	0	amino acid metabolism.synthesis.aspartate family.methionine.cystathionine beta-lyase	"MTO1 (METHIONINE OVERACCUMULATION 1) encodes a cystathionine gamma-synthase, which performs the first committed step in methionine biosynthesis. A conserved motif of 13 amino acids in the first exon is required for posttranscriptional autoregulation. Thi"
MSGI1_93377	F7SND4003GRD7F	3.4	2.2	23.7	1.5	0	-4	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_39180	F7SND4003GROPF	17.2	7	4.6	21.5	0	2.2	0	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L4/L1 (RPL4A)  Identical to 60S ribosomal protein L4-1 (L1) (RPL4A) [Arabidopsis Thaliana] (GB:Q9SF40); similar to 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] (TAIR:AT5G02870.1); similar to putative 60S ribosomal prot
MSGI1_62799	F7SND4003GRURY	21.9	30.5	87.8	55.4	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_79017	F7SND4003GS5JX	6.4	8.8	26.8	16.3	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_117135	F7SND4003GS6F5	0	0	66.5	2.7	0	-4.6	-7.1	0	not assigned.unknown	not assigned.unknown
MSGI1_112080	F7SND4003GSGIB	19.7	15.7	43.2	44	0	0	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_36632	F7SND4003GSPQQ	60.1	35.3	23.8	44.3	0	0	1.3	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S9 (RPS9C)  Identical to 40S ribosomal protein S9-2 (RPS9C) [Arabidopsis Thaliana] (GB:Q9FLF0); similar to 40S ribosomal protein S9 (RPS9B) [Arabidopsis thaliana] (TAIR:AT5G15200.1); similar to 40S ribosomal protein S9 [Catharanthus
MSGI1_44759	F7SND4003GSWZK	0	0.1	17.7	18.4	0	0	-5.1	-7.5	not assigned.unknown	not assigned.unknown
MSGI1_115800	F7SND4003GSYT3	1.1	0.3	23	1.8	0	-3.7	-4.4	0	not assigned.unknown	not assigned.unknown
MSGI1_122882	F7SND4003GTBVN	4.4	1.3	20.6	14.9	0	0	0	-3.5	not assigned.unknown	not assigned.unknown
MSGI1_53553	F7SND4003GTFFD	221.5	187.5	98	151.3	0	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_111899	F7SND4003GTIY1	666.3	325	101.7	126.8	-1	0	2.7	1.4	cell.organisation	"TUA4 (tubulin alpha-4 chain) Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers. Identical to Tubulin alpha-6 chain (TUBA6) [Arabidopsis Thaliana] (GB:P29511); Identical to Tubulin alpha-2/alpha-4 chain (TUBA4) [Arabidopsis T"
MSGI1_43977	F7SND4003GTL3H	48.7	70.9	28.7	34.8	0	0	0	1	not assigned.unknown	not assigned.unknown
MSGI1_61777	F7SND4003GTQ8K	137.4	156.8	81.5	166.7	0	1	0	0	amino acid metabolism.degradation.aspartate family.methionine	SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase  Identical to Adenosylhomocysteinase 2 (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase 1) (SAH hydrolase 2) (AdoHcyase 2) (SAHH2) [Arabidopsis Thaliana] (GB:Q9LK36;GB:Q8LPS8;GB
MSGI1_51218	F7SND4003GTU84	21.7	24.8	51.2	34.5	0	0	-1.2	0	protein.targeting.secretory pathway.vacuole	"vacuolar sorting receptor, putative  Identical to Vacuolar sorting receptor 6 precursor (AtVSR6) (Epidermal growth factor receptor-like protein 6) (AtELP6) (BP80-like protein d) (AtBP80d) (VSR6) [Arabidopsis Thaliana] (GB:Q9FYH7); similar to vacuolar sor"
MSGI1_41668	F7SND4003GU6D2	0	0	12.4	8.7	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_51217	F7SND4003GU8PG	0	0	54.5	3.2	0	-4.1	-6.8	0	not assigned.unknown	not assigned.unknown
MSGI1_40737	F7SND4003GUAXY	30.2	7.7	16.1	14.4	-2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_113421	F7SND4003GUDW6	35.6	22	12.8	13.5	0	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_28735	F7SND4003GUDYU	1.5	2.9	43.2	2.1	0	-4.4	-4.8	0	protein.postranslational modification	"CIPK25 (CBL-INTERACTING PROTEIN KINASE 25); kinase member of AtCIPKs similar to CIPK5 (CBL-INTERACTING PROTEIN KINASE 5), kinase [Arabidopsis thaliana] (TAIR:AT5G10930.1); similar to CBL-interacting protein kinase 6 [Populus trichocarpa] (GB:ABJ91234.1);"
MSGI1_43782	F7SND4003GUIWJ	43.7	15.9	43	23.8	-1.5	0	0	0	secondary metabolism.simple phenols	"LAC10 (laccase 10); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_30972	F7SND4003GUQ6Q	326.7	135.4	127.5	90.1	-1.3	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_63169	F7SND4003GUXPP	6.1	8.7	35.1	17.8	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_68958	F7SND4003GUZSG	88.2	53	158	26.9	0	-2.6	0	0	transport.metal	CAX3 (cation exchanger 3); cation:cation antiporter  Identical to Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger 3) (Ca(2+)/H(+) antiporter CAX3) (CAX3) [Arabidopsis Thaliana] (GB:Q93Z81;GB:O65022;GB:Q0WUY4;GB:Q9LKW8); similar to CAX1 (CATION
MSGI1_68958	F7SND4003GUZSG	88.2	53	158	26.9	0	-2.6	0	0	transport.calcium	CAX3 (cation exchanger 3); cation:cation antiporter  Identical to Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger 3) (Ca(2+)/H(+) antiporter CAX3) (CAX3) [Arabidopsis Thaliana] (GB:Q93Z81;GB:O65022;GB:Q0WUY4;GB:Q9LKW8); similar to CAX1 (CATION
MSGI1_84451	F7SND4003GV7P8	89.4	124.9	102.6	59.3	0	0	0	1.1	not assigned.unknown	not assigned.unknown
MSGI1_50531	F7SND4003GVB62	19.2	17.2	3.5	6.6	0	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_71617	F7SND4003GVIWF	83.7	168	83.3	206	1	1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_73967	F7SND4003GVLQ1	59.1	0.6	24.4	0.4	-6.6	-5.9	1.3	0	cell wall.modification	"EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4); hydrolase, acting on glycosyl bonds EXGT-A4, endoxyloglucan transferase, Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 5 precursor (EC 2.4.1.207) (At-XTH5) (XTH-5) (XTH5) [Arabidopsis Tha"
MSGI1_76393	F7SND4003GVMXI	66.6	30.1	68.3	60	-1.1	0	0	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"chloroplast 30S ribosomal protein S20, putative  Identical to 30S ribosomal protein S20, chloroplast precursor (RPS20) [Arabidopsis Thaliana] (GB:Q9ASV6;GB:Q9LIL6); similar to Os01g0678600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043859.1); sim"
MSGI1_62797	F7SND4003GVZAX	5.6	13.4	52.2	92.9	0	0	-3.2	-2.8	TCA / org. transformation.other organic acid transformaitons.malic	"ATNADP-ME3 (NADP-MALIC ENZYME 3); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor The malic enzyme (EC 1.1.1.40) encoded by the ATNADP-ME3 is presumably cytosolic"
MSGI1_73966	F7SND4003GW9QQ	2.6	0.7	18.2	4.1	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_66888	F7SND4003GWBKI	0.2	0.6	4.6	14	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_38301	F7SND4003GWKMG	9.4	35.6	57.9	46.4	1.9	0	-2.6	0	protein.degradation.ubiquitin.E3.SCF.FBOX	"F-box family protein AtSKP2;1 is a homolog of human SKP2, the human F-box protein that recruits E2F1.  Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain.  Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-bo"
MSGI1_114489	F7SND4003GXUW6	16.3	13	36.7	7.8	0	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_102331	F7SND4003GXYP4	13.1	29.8	50.8	20.4	0	-1.3	-2	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	PAL1 (PHE AMMONIA LYASE 1); phenylalanine ammonia-lyase encodes a protein similar to phenylalanine ammonia-lyase Identical to Phenylalanine ammonia-lyase 1 (EC 4.3.1.5) (PAL1) [Arabidopsis Thaliana] (GB:P35510;GB:Q94AN1;GB:Q9ZQD6); similar to PAL2 (pheny
MSGI1_42643	F7SND4003GY4OT	71.2	47.8	97.4	40.8	0	-1.3	0	0	PS.lightreaction.photosystem I.PSI polypeptide subunits	"PSAG Encodes subunit G of photosystem I, an 11-kDa membrane protein that plays an  important role in electron transport between plastocyanin and PSI and is involved in  the stability of the PSI complex. PSI-G subunit is bound to  PSI-B and is in contact"
MSGI1_76392	F7SND4003GYAQD	40.3	30.5	16.3	25.3	0	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_56203	F7SND4003GYBP9	9.2	4	56.6	26	0	0	-2.6	-2.7	not assigned.unknown	not assigned.unknown
MSGI1_112228	F7SND4003GYHLK	7.4	2.9	20.6	4.1	0	-2.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_61413	F7SND4003GYI6G	187.1	93.1	179.7	160.6	-1	0	0	0	PS.calvin cyle.GAP	"GAPA-2; glyceraldehyde-3-phosphate dehydrogenase  similar to GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT), glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G26650.1); similar to glyceraldehyde-3-phosphate dehydrogenas"
MSGI1_33864	F7SND4003GYIXF	6.6	26.6	22.8	12.5	2	0	0	0	secondary metabolism.isoprenoids.non-mevalonate pathway.DXR	"DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE) 1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) catalyzes the first committed step of the 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis. In Arabidopsis, DXR is encoded"
MSGI1_112341	F7SND4003GYUTJ	2.5	5.5	17.9	12.3	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_39178	F7SND4003GYYZN	104.9	79.2	49.7	49.5	0	0	1.1	0	glycolysis.UGPase	"UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative  Identical to UTP--glucose-1-phosphate uridylyltransferase 1 (EC 2.7.7.9) (UDP- glucose pyrophosphorylase 1) (UDPGP 1) (UGPase 1) [Arabido"
MSGI1_30046	F7SND4003GZKVW	0	0	17.4	18.9	0	0	-5.1	-5.2	PS.lightreaction.photosystem II.LHC-II	LHCB2.1 (Photosystem II light harvesting complex gene 2.1); chlorophyll binding Lhcb2.1 protein encoding a subunit of the light harvesting complex II. Member of a gene family with high degree of sequence similarity. Initially LHCB2.3 was considered as a
MSGI1_55675	F7SND4003GZQEM	23.2	19.7	11.1	45.4	0	2	0	0	"misc.gluco-, galacto- and mannosidases"	glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G18070.1); similar to beta-mannosidase enzyme [Lycopersicon esculentum] (GB:AAL37714.1); similar to beta-mannosidase 3 [Oncidium Gower Ram
MSGI1_112600	F7SND4003GZQG6	87.7	17.3	11.5	8	-2.3	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_115889	F7SND4003GZUKJ	62.4	17.6	28.7	28.5	-1.8	0	1.1	0	cell wall.cellulose synthesis	"ATCSLA02 (Cellulose synthase-like A2); transferase, transferring glycosyl groups encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein similar to ATCSLA15 (Cellulose synthase-like A15), transferase, transfer"
MSGI1_39176	F7SND4003GZWRO	0.4	0.5	19.8	14.8	0	0	-5.6	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_69869	F7SND4003GZZBJ	1.2	1.8	14.9	1.2	0	-3.6	-3.6	0	minor CHO metabolism.myo-inositol.InsP Synthases	"inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative  Identical to Probable inositol-3-phosphate synthase isozyme 3 (EC 5.5.1.4) (Myo- inositol-1-phosphate synthase 3) (MI-1-P synthase 3) (IPS"
MSGI1_50055	F7SND4003HADN6	12.3	0.5	9.3	0.7	-4.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_103237	F7SND4003HADO0	5.5	3.8	5.1	18.9	0	0	0	-2.3	not assigned.unknown	not assigned.unknown
MSGI1_27693	F7SND4003HAJ5B	40.2	46.2	13.1	48.6	0	1.9	1.6	0	amino acid metabolism.synthesis.aspartate family.methionine.cystathionine beta-lyase	"MTO1 (METHIONINE OVERACCUMULATION 1) encodes a cystathionine gamma-synthase, which performs the first committed step in methionine biosynthesis. A conserved motif of 13 amino acids in the first exon is required for posttranscriptional autoregulation. Thi"
MSGI1_64596	F7SND4003HBC30	29.2	7.2	13.4	14.4	-2	0	0	0	cell wall.cellulose synthesis	"ATCSLA02 (Cellulose synthase-like A2); transferase, transferring glycosyl groups encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein similar to ATCSLA15 (Cellulose synthase-like A15), transferase, transfer"
MSGI1_92633	F7SND4003HBF98	25.3	36.9	120.3	81.1	0	0	-2.2	-1.1	not assigned.unknown	not assigned.unknown
MSGI1_73025	F7SND4003HBHE8	2.9	1.6	17.5	2.1	0	-3.1	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_40919	F7SND4003HBJCY	89.1	10	36.1	26.5	-3.2	0	1.3	0	cell wall	"leucine-rich repeat family protein  similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G49750.1); similar to Leucine-rich repeat, plant specific [Medicago truncatula] (GB:ABD32635.1); contains InterPro domain Leucine-rich repea"
MSGI1_37850	F7SND4003HBL1E	42.9	7.9	22	26	-2.4	0	0	0	cell wall	"endo-1,4-beta-glucanase, putative / cellulase, putative  Identical to Endoglucanase 6 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 6) [Arabidopsis Thaliana] (GB:Q42059;GB:Q8H160;GB:Q9C7W3); similar to endo-1,4-beta-glucanase, putative / cellulase, put"
MSGI1_37850	F7SND4003HBL1E	42.9	7.9	22	26	-2.4	0	0	0	cell wall	"endo-1,4-beta-glucanase, putative / cellulase, putative  Identical to Endoglucanase 6 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 6) [Arabidopsis Thaliana] (GB:Q42059;GB:Q8H160;GB:Q9C7W3); similar to endo-1,4-beta-glucanase, putative / cellulase, put"
MSGI1_37850	F7SND4003HBL1E	42.9	7.9	22	26	-2.4	0	0	0	"cell wall.degradation.cellulases and beta -1,4-glucanases"	"endo-1,4-beta-glucanase, putative / cellulase, putative  Identical to Endoglucanase 6 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 6) [Arabidopsis Thaliana] (GB:Q42059;GB:Q8H160;GB:Q9C7W3); similar to endo-1,4-beta-glucanase, putative / cellulase, put"
MSGI1_37850	F7SND4003HBL1E	42.9	7.9	22	26	-2.4	0	0	0	"misc.gluco-, galacto- and mannosidases"	"endo-1,4-beta-glucanase, putative / cellulase, putative  Identical to Endoglucanase 6 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 6) [Arabidopsis Thaliana] (GB:Q42059;GB:Q8H160;GB:Q9C7W3); similar to endo-1,4-beta-glucanase, putative / cellulase, put"
MSGI1_25480	F7SND4003HBMWW	53.7	38.2	213.6	305.9	0	0	-2	-3	PS.lightreaction.photosystem I.LHC-I	"LHCA2 (Photosystem I light harvesting complex gene 2); chlorophyll binding Encodes a component of the light harvesting antenna complex of photosystem I. similar to LHCA6 (Photosystem I light harvesting complex gene 6), chlorophyll binding [Arabidopsis th"
MSGI1_40373	F7SND4003HBS89	2.3	0.4	34.1	12.6	0	0	-3.9	-5	cell wall.pectin*esterases.acetyl esterase	"pectinacetylesterase, putative  similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT5G26670.1); similar to Pectinacetylesterase [Medicago truncatula] (GB:ABD33181.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963"
MSGI1_48036	F7SND4003HBYOB	112.4	5.9	12.4	6.2	-4.3	0	3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_64232	F7SND4003HC26V	9.2	5.5	60.5	11.1	0	-2.4	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_111251	F7SND4003HC6HO	8.3	8.5	34.8	10.3	0	-1.8	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_41110	F7SND4003HCB8N	108.7	7.4	37.4	10.9	-3.9	-1.8	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_63166	F7SND4003HCBPN	3.4	0	11.7	0	0	-4.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_32345	F7SND4003HCH5R	46.9	105.8	89.2	137.6	1.2	0	0	0	protein.degradation.cysteine protease	AALP (ARABIDOPSIS ALEURAIN-LIKE PROTEASE); cysteine-type peptidase Encodes AALP protein. Identical to Thiol protease aleurain precursor (EC 3.4.22.16) (AtALEU) (Senescence- associated gene product 2) (ALEU) [Arabidopsis Thaliana] (GB:Q8H166;GB:Q9LL83;GB:
MSGI1_74870	F7SND4003HCIGP	103.9	30.5	21.5	63.8	-1.8	1.6	2.3	-1.1	not assigned.unknown	not assigned.unknown
MSGI1_42829	F7SND4003HCRLV	0.1	0	4.7	14.8	0	0	0	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_113415	F7SND4003HCTO9	29.2	1.1	3.6	0.6	-4.7	0	3	0	not assigned.unknown	not assigned.unknown
MSGI1_67713	F7SND4003HD8KI	97.9	161.9	665.7	162	0	-2	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_35089	F7SND4003HD9HX	3.8	5.6	35	11.3	0	-1.6	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_72092	F7SND4003HDGC3	64.6	4.8	10.2	8.6	-3.8	0	2.7	0	cell wall.modification	"ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thali"
MSGI1_29269	F7SND4003HDJLE	0.1	0	124.9	183.7	0	0	-10.3	-8.5	not assigned.unknown	not assigned.unknown
MSGI1_48660	F7SND4003HDZCJ	158.6	153.6	90.4	312.9	0	1.8	0	-1	not assigned.unknown	not assigned.unknown
MSGI1_71612	F7SND4003HE027	0.3	5.8	5.1	34.5	0	2.8	0	-2.6	not assigned.unknown	not assigned.unknown
MSGI1_75398	F7SND4003HE0PA	23.2	31.3	6.3	36.1	0	2.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_38299	F7SND4003HE41I	26.9	15.8	53.2	43.4	0	0	0	-1.5	tetrapyrrole synthesis.magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase	"AT103 (DICARBOXYLATE DIIRON 1) Encodes a putative ZIP protein with varying mRNA accumulation in leaves, stems and roots.  Has a consensus carboxylate-bridged di-iron binding site. Identical to Magnesium-protoporphyrin IX monomethyl ester [oxidative] cycl"
MSGI1_108975	F7SND4003HECTR	128.2	44.7	80.3	76.4	-1.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_73500	F7SND4003HEFIW	3.9	2.8	9.7	21.3	0	0	0	-2.9	not assigned.unknown	not assigned.unknown
MSGI1_84444	F7SND4003HEFWL	1.7	1.8	19.8	13.7	0	0	-3.5	0	major CHO metabolism.synthesis.starch.transporter	"GPT1 (glucose-6-phosphate transporter 1); antiporter/ glucose-6-phosphate transporter glucose6-Phosphate/phosphate transporter 1 Identical to Glucose-6-phosphate/phosphate translocator 1, chloroplast precursor (GPT1) [Arabidopsis Thaliana] (GB:Q9M5A9;GB:"
MSGI1_84444	F7SND4003HEFWL	1.7	1.8	19.8	13.7	0	0	-3.5	0	transport.metabolite transporters at the envelope membrane	"GPT1 (glucose-6-phosphate transporter 1); antiporter/ glucose-6-phosphate transporter glucose6-Phosphate/phosphate transporter 1 Identical to Glucose-6-phosphate/phosphate translocator 1, chloroplast precursor (GPT1) [Arabidopsis Thaliana] (GB:Q9M5A9;GB:"
MSGI1_23278	F7SND4003HEMIR	987.3	897.5	449	812.3	0	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_37500	F7SND4003HENER	218.6	106.3	88.7	136.6	-1	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_115556	F7SND4003HEOYL	0	0	9.5	17.1	0	0	0	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_47557	F7SND4003HEVLA	33.8	13.1	64.6	13.8	0	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_87699	F7SND4003HFNKF	0.2	0	19.6	14.3	0	0	-6.6	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_113088	F7SND4003HFUQC	45.9	15.9	38.5	24	-1.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_37359	F7SND4003HFW6R	3.8	3.3	34.8	60.1	0	0	-3.2	-4.2	not assigned.unknown	not assigned.unknown
MSGI1_74867	F7SND4003HFXUJ	32.5	17.1	9.6	11.9	0	0	1.8	0	cell wall.pectin*esterases.PME	ATPME2 (Arabidopsis thaliana pectin methylesterase 2) encodes a pectin methylesterase Identical to Pectinesterase-2 precursor (EC 3.1.1.11) (Pectin methylesterase 2) (PE 2) (PME2) [Arabidopsis Thaliana] (GB:Q42534;GB:Q9SSB0); similar to ATPME3 (Arabidops
MSGI1_49801	F7SND4003HGU7L	4.9	4.3	131.9	193.8	0	0	-4.8	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_38962	F7SND4003HGUEF	8.4	16.9	45.3	15.4	0	-1.6	-2.4	0	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS6 (Arabidopsis thaliana trehalose phosphatase/synthase 6); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that"
MSGI1_49554	F7SND4003HGYPD	30.9	19.6	64.6	44.2	0	0	-1.1	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	"photosystem II reaction center W (PsbW) protein-related Encodes a protein similar to photosystem II reaction center subunit W. Identical to Photosystem II reaction center W protein, chloroplast precursor (PSII 6.1 kDa protein) (PSBW) [Arabidopsis Thalian"
MSGI1_111247	F7SND4003HGYPX	41.2	24.3	13.7	30.6	0	0	1.6	0	protein.folding	"chaperonin, putative  similar to T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative [Arabidopsis thaliana] (TAIR:AT1G24510.1); similar to cytosolic chaperonin delta-subunit [Glycine max] (GB:CAE47772.1); simila"
MSGI1_117127	F7SND4003HGZQH	315.9	3.5	73.2	1.2	-6.5	-5.9	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_77960	F7SND4003HH8P7	43.3	13	30.4	18.6	-1.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_59763	F7SND4003HHE43	1.7	24.1	7.7	13.3	3.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_39171	F7SND4003HHEV1	60.5	35.1	50.5	15.5	0	-1.7	0	0	transport.Major Intrinsic Proteins.PIP	"PIP2;4/PIP2F (plasma membrane intrinsic protein 2;4); water channel  Identical to Probable aquaporin PIP2.4 (Plasma membrane intrinsic protein 2.4) (PIP2.4) [Arabidopsis Thaliana] (GB:Q9FF53); similar to PIP2B (plasma membrane intrinsic protein 2,2), wat"
MSGI1_106974	F7SND4003HIC7Y	69.2	26.1	23.1	51.2	-1.4	1.1	1.6	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_64953	F7SND4003HIF43	36.8	11.7	23.3	31.9	-1.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_84438	F7SND4003HIG3H	4	4	27.2	5.1	0	-2.4	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_63162	F7SND4003HIJKB	4.6	1.4	39.6	22.1	0	0	-3.1	-4	not assigned.unknown	not assigned.unknown
MSGI1_25874	F7SND4003HIQUE	461.6	330.3	103.3	181.8	0	0	2.2	0	protein.synthesis.elongation	elongation factor 1-alpha / EF-1-alpha  Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A) (A4) [Arabidopsis Thaliana] (GB:P13905); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar
MSGI1_39883	F7SND4003HIRX8	110.2	76.4	42.7	111.3	0	1.4	1.4	0	protein.folding	"heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2)  Identical to Heat shock cognate 70 kDa protein 2 (Hsc70.2) (HSC70-2) [Arabidopsis Thaliana] (GB:P22954;GB:Q9LZ53); similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR"
MSGI1_75393	F7SND4003HJ13G	48	31.7	32.1	86.8	0	1.4	0	-1.5	protein.synthesis.misc ribososomal protein	60S ribosomal protein L15 (RPL15B)  Identical to 60S ribosomal protein L15-2 (RPL15B) [Arabidopsis Thaliana] (GB:Q8VYF1;GB:O23582); Identical to 60S ribosomal protein L15-1 (RPL15A) [Arabidopsis Thaliana] (GB:O23515); similar to 60S ribosomal protein L15
MSGI1_39491	F7SND4003HJ1N5	6.8	3.6	23.1	3.2	0	-2.9	0	0	stress.abiotic.drought/salt	ERD4 (EARLY-RESPONSIVE TO DEHYDRATION 4)  similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT1G32090.1); similar to Os07g0150100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058898.1); sim
MSGI1_60696	F7SND4003HJC1V	1.1	2.8	13.8	9.9	0	0	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_37498	F7SND4003HJFB6	0	0	78.6	181.6	0	1.2	-7.3	-8.5	not assigned.unknown	not assigned.unknown
MSGI1_31775	F7SND4003HJFWY	54.6	22.7	18.6	16.2	-1.3	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_81371	F7SND4003HJKHP	0	0	32.3	8.6	0	-1.9	-6	0	not assigned.unknown	not assigned.unknown
MSGI1_62791	F7SND4003HJLNV	64.4	15.3	13.7	15.3	-2.1	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_79626	F7SND4003HJREB	27.5	34	11.5	11.7	0	0	0	1.5	not assigned.unknown	not assigned.unknown
MSGI1_25939	F7SND4003HJSNG	58.2	83.9	44.7	89	0	1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_87697	F7SND4003HKDFD	20.4	7.3	31.8	28.3	0	0	0	-2	tetrapyrrole synthesis.magnesium chelatase	"CHLI1 (CHLORINA 42); magnesium chelatase Encodes the CHLI subunit of magnesium chelatase which is required for chlorophyll biosynthesis. Identical to Magnesium-chelatase subunit chlI, chloroplast precursor (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase) (P"
MSGI1_115553	F7SND4003HKF24	5.2	10.2	38.6	13.3	0	-1.5	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_47551	F7SND4003HKGCM	11.8	6.7	22.6	27.5	0	0	0	-2	cell wall.degradation.mannan-xylose-arabinose-fucose	"(1-4)-beta-mannan endohydrolase, putative  similar to (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] (TAIR:AT5G66460.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAV44080.1); contains InterPro domain"
MSGI1_61402	F7SND4003HKQDH	327.6	114.1	79.9	79.3	-1.5	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_66880	F7SND4004H20S2	2.4	3.2	105.7	129.8	0	0	-5.5	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_115024	F7SND4004H20UC	0.2	0.3	13.7	17.6	0	0	-6.1	-5.9	cell wall	GRF2 (GENERAL REGULATORY FACTOR 2); protein phosphorylated amino acid binding G-box binding factor GF14 omega encoding a 14-3-3 protein Identical to 14-3-3-like protein GF14 omega (General regulatory factor 2) (GRF2) [Arabidopsis Thaliana] (GB:Q01525); s
MSGI1_115024	F7SND4004H20UC	0.2	0.3	13.7	17.6	0	0	-6.1	-5.9	signalling.14-3-3 proteins	GRF2 (GENERAL REGULATORY FACTOR 2); protein phosphorylated amino acid binding G-box binding factor GF14 omega encoding a 14-3-3 protein Identical to 14-3-3-like protein GF14 omega (General regulatory factor 2) (GRF2) [Arabidopsis Thaliana] (GB:Q01525); s
MSGI1_115552	F7SND4004H29DL	0	0	13.5	7	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_63849	F7SND4004H29EM	0.3	0.5	45.7	15.7	0	-1.5	-7.3	-5	fermentation.aldehyde dehydrogenase	ALDH7B4 (ALDEHYDE DEHYDROGENASE 7B4); 3-chloroallyl aldehyde dehydrogenase Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 7B4 (EC 1.2.1.3) (Antiquitin-1) (Turgor- responsive ALDH) (ALDH7B4) [Arabidopsis Thaliana] (GB:Q9SYG7;GB:Q546B7); simila
MSGI1_111169	F7SND4004H2H4B	0.3	0.4	16.4	8.9	0	0	-5.8	0	cell wall	GLP7 (GERMIN-LIKE PROTEIN 7); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP7) Identical to Germin-like protein subfamily 1 member 1 precursor (GLP7) [Arabidopsis Thaliana] (GB:P92998;GB:Q9S7Q1); similar to germin
MSGI1_111169	F7SND4004H2H4B	0.3	0.4	16.4	8.9	0	0	-5.8	0	stress.abiotic.unspecified	GLP7 (GERMIN-LIKE PROTEIN 7); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP7) Identical to Germin-like protein subfamily 1 member 1 precursor (GLP7) [Arabidopsis Thaliana] (GB:P92998;GB:Q9S7Q1); similar to germin
MSGI1_37062	F7SND4004H2ME7	0.8	1.2	19	1.1	0	-4.1	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_113547	F7SND4004H2N0I	5.2	3.6	37.4	4	0	-3.2	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_114916	F7SND4004H2XGT	1.2	2.1	13.3	5	0	0	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_37667	F7SND4004H2Z2Q	11.7	100.3	289.2	246.5	3.1	0	-4.6	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_103232	F7SND4004H3754	45.6	50.6	8.6	39.4	0	2.2	2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_77384	F7SND4004H3CQH	6.1	32.7	10.9	10.1	2.4	0	0	1.7	cell wall.cellulose synthesis	"ATCSLA09 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 4); transferase, transferring glycosyl groups encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium"
MSGI1_51955	F7SND4004H3GU8	51	105.1	380	137.9	1	-1.5	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_41108	F7SND4004H3HOE	217	124.8	153	345.4	0	1.2	0	-1.5	protein.synthesis.elongation	elongation factor 1-alpha / EF-1-alpha  Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A) (A4) [Arabidopsis Thaliana] (GB:P13905); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar
MSGI1_62409	F7SND4004H3I1U	111.4	124.2	49.4	78.3	0	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_95712	F7SND4004H3S8H	0	0	27	5.3	0	-2.3	-5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_63161	F7SND4004H3WAB	7	121.5	27.9	147.4	4.1	2.4	-2	0	protein.degradation.subtilases	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_66453	F7SND4004H454Q	0.2	0.1	12.3	11.7	0	0	-5.9	-6.9	PS.lightreaction.other electron carrier (ox/red).ferredoxin reductase	ATLFNR1 (LEAF FNR 1); NADPH dehydrogenase/ oxidoreductase Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase.  It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid.  The affinity of this enzyme for fer
MSGI1_34848	F7SND4004H464J	1.4	3.9	15.4	3.5	0	0	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_113963	F7SND4004H4R69	10.2	9.5	46.6	44.3	0	0	-2.2	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_76381	F7SND4004H4UOG	76.4	46.2	25.8	53.7	0	1.1	1.6	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S9 (RPS9C)  Identical to 40S ribosomal protein S9-2 (RPS9C) [Arabidopsis Thaliana] (GB:Q9FLF0); similar to 40S ribosomal protein S9 (RPS9B) [Arabidopsis thaliana] (TAIR:AT5G15200.1); similar to 40S ribosomal protein S9 [Catharanthus
MSGI1_44362	F7SND4004H5279	33.7	13.2	11.4	23.3	0	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_60077	F7SND4004H552D	30.5	71	26.1	41.6	1.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_109954	F7SND4004H55B2	1.8	29	58.6	52	4	0	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_50524	F7SND4004H55IA	125.4	68.1	115	171.1	0	0	0	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_61401	F7SND4004H5GH3	46.8	16.1	69.1	91.5	-1.5	0	0	-2.5	not assigned.unknown	not assigned.unknown
MSGI1_114914	F7SND4004H5IN9	51	41.4	12.7	18.4	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_43773	F7SND4004H5IX9	4.3	7.5	28.4	9.4	0	0	-2.7	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_43773	F7SND4004H5IX9	4.3	7.5	28.4	9.4	0	0	-2.7	0	misc.plastocyanin-like	plastocyanin-like domain-containing protein  Identical to Early nodulin-like protein 2 precursor (Phytocyanin-like protein) [Arabidopsis Thaliana] (GB:Q9T076;GB:Q5PNT5;GB:Q8LBE5); similar to plastocyanin-like domain-containing protein [Arabidopsis thalian
MSGI1_71603	F7SND4004H5KHH	0	0	19.3	26	0	0	-5.3	-5.7	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G04790.1); similar to zinc finger family protein, putative, expressed [Oryza sativa (japonica cultivar-gro"
MSGI1_113085	F7SND4004H5PRU	26.1	18.7	80.8	56.7	0	0	-1.6	-1.6	PS.lightreaction.photosystem II.LHC-II	"chlorophyll A-B binding protein CP29 (LHCB4)  Identical to Chlorophyll a-b binding protein CP29.1, chloroplast precursor (LHCII protein 4.1) (LHCB4.1) (LHCB4.1) [Arabidopsis Thaliana] (GB:Q07473;GB:Q8RWN1;GB:Q94AD5;GB:Q94K17); similar to LHCB4.2 (LIGHT H"
MSGI1_113402	F7SND4004H5SMN	0	0.5	12.8	42.7	0	1.7	-4.7	-6.4	not assigned.unknown	not assigned.unknown
MSGI1_65311	F7SND4004H6HQB	6.8	7.8	26.6	28.7	0	0	-2	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_44978	F7SND4004H6Y2A	93.6	77.7	126.9	163.5	0	0	0	-1.1	PS.photorespiration.glycolate oxydase	"(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative  Identical to Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 (EC 1.1.3.15) (Glycolate oxidase 2) (GOX 2) (Short chain al"
MSGI1_48656	F7SND4004H73NV	19	32.3	359.7	21.7	0	-4.1	-4.2	0	minor CHO metabolism.myo-inositol.InsP Synthases	"inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative  Identical to Probable inositol-3-phosphate synthase isozyme 3 (EC 5.5.1.4) (Myo- inositol-1-phosphate synthase 3) (MI-1-P synthase 3) (IPS"
MSGI1_66451	F7SND4004H7AIZ	24.8	82.1	19.8	81.6	1.7	2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_72081	F7SND4004H7NHA	75.8	72.6	29.5	57.6	0	0	1.4	0	nucleotide metabolism.phosphotransfer and pyrophosphatases.misc	"inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative  similar to inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative [Arabidopsis thaliana] (TA"
MSGI1_32011	F7SND4004H85NQ	8.4	11.4	29.1	20.9	0	0	-1.8	0	protein.degradation.aspartate protease	aspartyl protease family protein  similar to pepsin A [Arabidopsis thaliana] (TAIR:AT1G62290.2); similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT4G04460.1); similar to aspartic protease (GB:AAB03108.1); similar to Aspartic prot
MSGI1_53806	F7SND4004H8F18	32.3	66.5	26.9	51.5	1	0	0	0	hormone metabolism.auxin.signal transduction	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_53806	F7SND4004H8F18	32.3	66.5	26.9	51.5	1	0	0	0	transport.misc	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_53806	F7SND4004H8F18	32.3	66.5	26.9	51.5	1	0	0	0	transport.amino acids	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_84432	F7SND4004H8STV	23.8	13.9	355	33.7	0	-3.4	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_57623	F7SND4004H8YGY	14	23.4	44.4	18.7	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_32919	F7SND4004H92XO	4.1	4.8	9.5	27.6	0	0	0	-2.5	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase family protein  similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to lipoxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G72520.1); similar to LOX2 (LIPOXYGENASE 2) [Arabi"
MSGI1_41660	F7SND4004H99FY	0.7	1.3	17.6	10.7	0	0	-4.7	0	transport.misc	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  Identical to Patellin-5 (PATL5) [Arabidopsis Thaliana] (GB:Q9M0R2); similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis
MSGI1_41660	F7SND4004H99FY	0.7	1.3	17.6	10.7	0	0	-4.7	0	DNA.unspecified	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  Identical to Patellin-5 (PATL5) [Arabidopsis Thaliana] (GB:Q9M0R2); similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis
MSGI1_33745	F7SND4004H9HYD	9.7	17.7	32.3	22	0	0	-1.7	0	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS6 (Arabidopsis thaliana trehalose phosphatase/synthase 6); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that"
MSGI1_76892	F7SND4004H9LYT	0.2	0.2	18.3	148.2	0	3	-6.5	-9.5	not assigned.unknown	not assigned.unknown
MSGI1_73016	F7SND4004H9N0N	5	21.4	11.9	12.3	2.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_66447	F7SND4004H9QUS	10.8	33.7	29.1	25.2	1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_39487	F7SND4004H9UV1	34.6	18.9	12	19.4	0	0	1.5	0	signalling.calcium	CRT1 (CALRETICULIN 1); calcium ion binding Encodes calreticulin CRT1. Identical to Calreticulin-1 precursor (CRT1) [Arabidopsis Thaliana] (GB:O04151); similar to calreticulin 2 (CRT2) [Arabidopsis thaliana] (TAIR:AT1G09210.1); similar to calreticulin-1 [
MSGI1_32009	F7SND4004I079U	6.5	71.5	14.8	53.1	3.5	1.8	0	0	signalling.receptor kinases.DUF 26	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G21400.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G00970.1); similar to receptor-like protein kinase homolog RK20-1
MSGI1_39486	F7SND4004I0AKV	17.4	16.7	43.8	54.1	0	0	0	-1.7	tetrapyrrole synthesis.magnesium chelatase	GUN5 (GENOMES UNCOUPLED 5) Encodes magnesium chelatase involved in plastid-to-nucleus signal transduction. similar to Mg protoporphyrin IX chelatase [Nicotiana tabacum] (GB:AAB97152.1); similar to protoporphyrin IX:Mg Chelatase [Antirrhinum majus] (GB:CA
MSGI1_83791	F7SND4004I0DQL	14	50.2	35	43.9	1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_104128	F7SND4004I0FL4	37.5	54.5	45.5	24	0	0	0	1.2	not assigned.unknown	not assigned.unknown
MSGI1_49121	F7SND4004I0QXP	16.1	32	74.1	54.2	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_51716	F7SND4004I0TYG	51.6	28	23.6	19.6	0	0	1.1	0	DNA.synthesis/chromatin structure.histone	"histone H2B, putative  Identical to Histone H2B.10 (HTB2) [Arabidopsis Thaliana] (GB:Q9FFC0;GB:Q96516); similar to histone H2B, putative [Arabidopsis thaliana] (TAIR:AT3G46030.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold;"
MSGI1_35227	F7SND4004I0VRM	93.6	146.1	70	150.3	0	1.1	0	0	cell wall.cell wall proteins.AGPs	FLA12 (fasciclin-like arabinogalactan-protein 12)  Identical to Fasciclin-like arabinogalactan protein 12 precursor (FLA12) [Arabidopsis Thaliana] (GB:Q8LEE9;GB:Q94EG7;GB:Q9FKJ8); similar to FLA11 (fasciclin-like arabinogalactan-protein 11) [Arabidopsis t
MSGI1_32340	F7SND4004I10XF	5.3	14.1	1.5	13.7	0	3.2	0	0	stress.abiotic.heat	heat shock protein-related  similar to heat shock protein-related [Arabidopsis thaliana] (TAIR:AT2G29970.1); similar to Os11g0104300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065527.1); similar to expressed protein [Oryza sativa (japonica cultiva
MSGI1_33743	F7SND4004I16RK	44.2	28	320.6	219.7	0	0	-2.9	-3	PS.lightreaction.photosystem II.LHC-II	"chlorophyll A-B binding protein CP29 (LHCB4)  Identical to Chlorophyll a-b binding protein CP29.1, chloroplast precursor (LHCII protein 4.1) (LHCB4.1) (LHCB4.1) [Arabidopsis Thaliana] (GB:Q07473;GB:Q8RWN1;GB:Q94AD5;GB:Q94K17); similar to LHCB4.2 (LIGHT H"
MSGI1_43769	F7SND4004I1A7M	24.2	34.3	471.5	31.6	0	-3.9	-4.3	0	minor CHO metabolism.myo-inositol.InsP Synthases	"inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative  Identical to Probable inositol-3-phosphate synthase isozyme 3 (EC 5.5.1.4) (Myo- inositol-1-phosphate synthase 3) (MI-1-P synthase 3) (IPS"
MSGI1_42822	F7SND4004I1B1I	0.5	0.3	14.4	10.3	0	0	-4.8	-5.1	cell wall	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_42822	F7SND4004I1B1I	0.5	0.3	14.4	10.3	0	0	-4.8	-5.1	protein.degradation.subtilases	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_52750	F7SND4004I1LZI	46	113.5	34.3	60.6	1.3	0	0	0	cell wall.cell wall proteins.AGPs	FLA12 (fasciclin-like arabinogalactan-protein 12)  Identical to Fasciclin-like arabinogalactan protein 12 precursor (FLA12) [Arabidopsis Thaliana] (GB:Q8LEE9;GB:Q94EG7;GB:Q9FKJ8); similar to FLA11 (fasciclin-like arabinogalactan-protein 11) [Arabidopsis t
MSGI1_112684	F7SND4004I1NHU	91.8	74	96.4	38.1	0	-1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_60687	F7SND4004I1QW7	34.5	31.7	22.3	55.5	0	1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_59758	F7SND4004I1WZW	3.7	4.3	15.4	2	0	-2.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_38787	F7SND4004I23BZ	10.9	0.1	5.1	0	-6.8	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_38787	F7SND4004I23BZ	10.9	0.1	5.1	0	-6.8	0	0	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to ATLTL1/LTL1 (LI-TOLERANT LIPASE 1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT3G04290.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipo"
MSGI1_43349	F7SND4004I2EML	1.1	3	16.6	25.3	0	0	-3.9	-3.1	stress.biotic	"disease resistance protein (CC-NBS-LRR class), putative  Identical to Probable disease resistance protein At5g66900 [Arabidopsis Thaliana] (GB:Q9FKZ1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G66"
MSGI1_114911	F7SND4004I2INO	3	13	49.7	11.1	0	-2.2	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_73013	F7SND4004I2PZC	8.4	46.4	95.3	22.3	2.5	-2.1	-3.5	0	protein.targeting.secretory pathway.vacuole	GAMMA-VPE (Vacuolar processing enzyme gamma); cysteine-type endopeptidase Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types
MSGI1_38786	F7SND4004I2Q98	2	1.7	23.1	104.5	0	2.2	-3.5	-5.9	signalling.calcium	calmodulin-binding protein-related  similar to Os05g0512400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056021.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048)
MSGI1_58850	F7SND4004I2SH2	0	0	14.7	21.6	0	0	-4.9	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_25627	F7SND4004I2XC1	2.2	5.1	18.3	6.4	0	0	-3.1	0	signalling.receptor kinases.RKF3 like	"protein kinase family protein  similar to RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3), kinase [Arabidopsis thaliana] (TAIR:AT2G48010.1); similar to Os05g0423500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055591.1); similar to SHR5-receptor-like k"
MSGI1_33456	F7SND4004I2Y4K	3.7	36.9	12.8	40	3.3	1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_53803	F7SND4004I347E	55.3	49.6	23.5	50	0	1.1	1.2	0	RNA.processing	"PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed."
MSGI1_67699	F7SND4004I3891	0	0	11.7	16.9	0	0	-4.5	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_35625	F7SND4004I38PU	29.2	45.4	63.1	44	0	0	-1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_116024	F7SND4004I38XD	32.1	13.6	10.1	23.7	0	0	1.7	0	cell wall	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G61820.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japoni
MSGI1_116024	F7SND4004I38XD	32.1	13.6	10.1	23.7	0	0	1.7	0	protein.degradation.aspartate protease	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G61820.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japoni
MSGI1_102315	F7SND4004I3JFF	6.1	8.7	32.1	10.4	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_66874	F7SND4004I3JIG	11.7	5.3	34.6	29.9	0	0	-1.6	-2.5	not assigned.unknown	not assigned.unknown
MSGI1_115421	F7SND4004I3K4L	14.1	11.1	5.7	0.3	0	0	0	5.2	not assigned.unknown	not assigned.unknown
MSGI1_33081	F7SND4004I3OEE	91.6	191.5	439.6	844.3	1.1	0.9	-2.3	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_122975	F7SND4004I3VCI	64.9	38.6	41.5	110.4	0	1.4	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_80797	F7SND4004I45VP	0	0.1	35.9	53.6	0	0	-6.2	-9.1	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_39164	F7SND4004I47T2	20	31.2	49.2	52.2	0	0	-1.3	0	transport.p- and v-ATPases	"AHA5 (ARABIDOPSIS H(+)-ATPASE 5); ATPase  Identical to ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump 5) (AHA5) [Arabidopsis Thaliana] (GB:Q9SJB3); similar to AHA1 (PLASMA MEMBRANE PROTON ATPASE), ATPase [Arabidopsis thaliana] (TAIR:AT2G18960.1"
MSGI1_33742	F7SND4004I47YH	13.5	12.1	32.8	51.2	0	0	0	-2.1	protein.synthesis.initiation	translation initiation factor  similar to eukaryotic translation initiation factor 2 family protein / eIF-2 family protein [Arabidopsis thaliana] (TAIR:AT1G76810.1); similar to translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G21160.1); simi
MSGI1_27860	F7SND4004I4BLJ	49.9	33.1	21	29.9	0	0	1.2	0	stress.abiotic.heat	"heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)  Identical to Heat shock cognate 70 kDa protein 3 (Hsc70.3) (HSC70-3) [Arabidopsis Thaliana] (GB:O65719;GB:Q42345); similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR"
MSGI1_40731	F7SND4004I4DDS	71.6	76.3	102.5	239.9	0	1.2	0	-1.7	major CHO metabolism.synthesis.starch.starch synthase	"starch synthase, putative  Identical to Probable granule-bound starch synthase 1, chloroplast precursor (EC 2.4.1.242) (Granule-bound starch synthase I) (GBSS-I) (WAXY) [Arabidopsis Thaliana] (GB:Q9MAQ0); similar to glycogen synthase, putative [Arabidops"
MSGI1_73012	F7SND4004I4H0B	0	0	47.2	32.4	0	0	-6.6	-6	transport.amino acids	"AAP3 (amino acid permease 3); amino acid permease Amino acid permease which transports basic amino acids. similar to AAP4 (amino acid permease 4), amino acid permease [Arabidopsis thaliana] (TAIR:AT5G63850.1); similar to AAP5 (amino acid permease 5), ami"
MSGI1_48651	F7SND4004I4Z60	5.7	11.4	39	6.4	0	-2.6	-2.8	0	cell wall	"CYP71A16 (cytochrome P450, family 71, subfamily A, polypeptide 16); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71A16 (EC 1.14.-.-) (CYP71A16) [Arabidopsis Thaliana] (GB:Q9FH66); similar to CYP71A14 (cytochrome P450, family 71, s"
MSGI1_48651	F7SND4004I4Z60	5.7	11.4	39	6.4	0	-2.6	-2.8	0	misc.cytochrome P450	"CYP71A16 (cytochrome P450, family 71, subfamily A, polypeptide 16); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71A16 (EC 1.14.-.-) (CYP71A16) [Arabidopsis Thaliana] (GB:Q9FH66); similar to CYP71A14 (cytochrome P450, family 71, s"
MSGI1_33607	F7SND4004I5FNU	4.1	17.3	66.9	83.8	0	0	-4	-2.3	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_36312	F7SND4004I5HK1	60.4	67.3	133	114.6	0	0	-1.1	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.COMT	ATOMT1 (O-METHYLTRANSFERASE 1) A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay.  AtOMT1 (At5g54160) encodes a flavonol 3?-O-methyltransferase that is highly active towards quercetin and myr
MSGI1_99667	F7SND4004I5IOW	0	0	37.6	49.1	0	0	-6.2	-6.6	not assigned.unknown	not assigned.unknown
MSGI1_53544	F7SND4004I5OU2	1.9	4.1	23.4	21.2	0	0	-3.6	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_88363	F7SND4004I5WXT	96.1	50.4	19.4	60.2	0	1.6	2.3	0	stress.abiotic.heat	BIP (LUMINAL BINDING PROTEIN); ATP binding luminal binding protein (BiP) Identical to Luminal-binding protein 2 precursor (BiP2) (AtBP2) [Arabidopsis Thaliana] (GB:Q39043;GB:Q39042); Identical to Luminal-binding protein 1 precursor (BiP1) (AtBP1) [Arabido
MSGI1_84428	F7SND4004I5Y0I	10.1	8.9	36.2	22.3	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_32917	F7SND4004I61RR	6.6	32.4	33.1	75.7	2.3	1.2	-2.3	-1.2	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN1 (DARK INDUCIBLE 6) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumul"
MSGI1_51198	F7SND4004I64RF	24.1	9.4	13.8	35.4	0	0	0	-1.9	cell wall.modification	"ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A10) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to Expan"
MSGI1_42821	F7SND4004I6C6G	8.9	0.6	225.4	323.2	0	0	-4.7	-9.1	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B)  Identical to Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) (RBCS-1B) [Arabidopsis Thaliana]"
MSGI1_85073	F7SND4004I6ELZ	15.8	44.1	23.7	50.7	1.5	1.1	0	0	transport.ABC transporters and multidrug resistance systems	"ATPDR3/PDR3 (PLEIOTROPIC DRUG RESISTANCE 3); ATPase, coupled to transmembrane movement of substances  Identical to Probable pleiotropic drug resistance protein 3 (PDR3) [Arabidopsis Thaliana] (GB:Q7PC88;GB:O80878); similar to PDR8/PEN3 (PLEIOTROPIC DRUG"
MSGI1_44973	F7SND4004I6KT1	306	129.2	138.2	81.9	-1.2	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_64222	F7SND4004I6XSO	33.3	25.8	49.4	73	0	0	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_49543	F7SND4004I7HBW	32.1	176.3	226.4	189.7	2.5	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_33739	F7SND4004I7VD6	56.9	55.5	44.4	87.9	0	1	0	0	protein.synthesis.elongation	elongation factor 1-alpha / EF-1-alpha  Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A) (A4) [Arabidopsis Thaliana] (GB:P13905); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar
MSGI1_65686	F7SND4004I8AMV	73.8	110.1	83.6	415.1	0	2.3	0	-1.9	major CHO metabolism.degradation.starch.starch cleavage	"ATBETA-AMY (BETA-AMYLASE); beta-amylase cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. Identical to Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (BMY"
MSGI1_113391	F7SND4004I8HG0	90.6	48	37.5	86.9	0	1.2	1.3	0	PS.calvin cyle.rubisco interacting	"CPN60A (chloroplast / 60 kDa chaperonin alpha subunit); ATP binding / protein binding / unfolded protein binding Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding.  Mutants display aberrant chloroplast and embryo development."
MSGI1_69399	F7SND4004I8K8T	0	0.1	6.5	16.5	0	0	0	-7.4	not assigned.unknown	not assigned.unknown
MSGI1_29930	F7SND4004I8XVD	6.4	24.8	22.5	18.9	2	0	0	0	secondary metabolism.isoprenoids.non-mevalonate pathway.DXR	"DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE) 1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) catalyzes the first committed step of the 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis. In Arabidopsis, DXR is encoded"
MSGI1_113958	F7SND4004I9M19	0.3	0	13.8	5.1	0	0	-5.5	0	not assigned.unknown	not assigned.unknown
MSGI1_32339	F7SND4004I9OIR	21.1	65.3	12.3	32.4	1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_24709	F7SND4004I9XTM	10.9	8.5	56.8	5.1	0	-3.5	-2.4	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL12 (beta-galactosidase 12); beta-galactosidase putative beta-galactosidase similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis"
MSGI1_24709	F7SND4004I9XTM	10.9	8.5	56.8	5.1	0	-3.5	-2.4	0	"misc.gluco-, galacto- and mannosidases"	"BGAL12 (beta-galactosidase 12); beta-galactosidase putative beta-galactosidase similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis"
MSGI1_48649	F7SND4004IA31A	10.1	21.1	68.6	24	0	-1.5	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_30439	F7SND4004IA4R9	8.6	4	63.2	3	0	-4.4	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_40905	F7SND4004IAB3X	3.4	3.8	10.9	22.3	0	0	0	-2.6	stress.biotic.respiratory burst	RHD2 (ROOT HAIR DEFECTIVE 2) RHD2 (along with RHD3 and RHD4) is required for normal root hair elongation. Has NADPH oxidase activity. Gene is expressed in the elongation and differential zone in the elongating root hairs. similar to RBOHD (RESPIRATORY BU
MSGI1_51195	F7SND4004IAJSK	0	0	11.6	6.3	0	0	-4.5	0	DNA.unspecified	"SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  Identical to Patellin-2 (PATL2) [Arabidopsis Thaliana] (GB:Q56ZI2;GB:Q9SK94); similar to PATL1 (PATELLIN 1), transporter [Arabidopsis thaliana] (TAIR:AT1G72150.1); similar"
MSGI1_51195	F7SND4004IAJSK	0	0	11.6	6.3	0	0	-4.5	0	transport.misc	"SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  Identical to Patellin-2 (PATL2) [Arabidopsis Thaliana] (GB:Q56ZI2;GB:Q9SK94); similar to PATL1 (PATELLIN 1), transporter [Arabidopsis thaliana] (TAIR:AT1G72150.1); similar"
MSGI1_114796	F7SND4004IAJVB	3	35.5	16.8	32.3	3.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_113734	F7SND4004IAY3D	0.6	0	13.3	11.3	0	0	-4.5	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_29453	F7SND4004IB11I	0.3	0.2	4.4	15.9	0	0	0	-6.3	amino acid metabolism.synthesis.branched chain group.common	"CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphu"
MSGI1_50732	F7SND4004IB3TV	113.2	142.2	121.9	641.2	0	2.4	0	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_59754	F7SND4004IB49F	8	10.7	73.6	20.2	0	-1.9	-3.2	0	misc.peroxidases	PRXR1 (peroxidase 42); peroxidase Encodes AT4g21960 (AT4g21960/T8O5_170). Identical to Peroxidase 42 precursor (EC 1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b) (PER42) [Arabidopsis Thaliana] (GB:Q9SB81;GB:Q41937;GB:Q42579;GB:Q43730); similar to peroxida
MSGI1_32217	F7SND4004IB5HV	1.1	78.1	136.1	187.6	6.1	0	-7	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_58529	F7SND4004IB8B2	73.8	60.5	117.7	196.8	0	0	0	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_113540	F7SND4004IB8DN	0	0	23.3	18.2	0	0	-5.5	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_116021	F7SND4004IBC0Q	0	0	13.2	14.4	0	0	-4.7	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_61394	F7SND4004IBC83	9.2	16.3	25.2	42.4	0	0	0	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_37490	F7SND4004IBL32	22.8	14.1	45.9	15.8	0	-1.5	0	0	misc.cytochrome P450	"CYP72A7 (cytochrome P450, family 72, subfamily A, polypeptide 7); oxygen binding putative cytochrome P450 similar to CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14690.1); similar to"
MSGI1_97226	F7SND4004IBLN0	0	0	10.3	14.2	0	0	0	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_34968	F7SND4004IBOBL	0.1	0.1	59.3	83.7	0	0	-9.2	-9.7	PS.lightreaction.other electron carrier (ox/red).ferredoxin reductase	ATLFNR1 (LEAF FNR 1); NADPH dehydrogenase/ oxidoreductase Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase.  It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid.  The affinity of this enzyme for fer
MSGI1_84425	F7SND4004IBZ9E	23.7	59.9	25.2	36.5	1.3	0	0	0	amino acid metabolism.degradation.histidine	"EMB1075 (EMBRYO DEFECTIVE 1075); carboxy-lyase  similar to GAD2 (GLUTAMATE DECARBOXYLASE 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G65960.1); similar to serine decarboxylase [Brassica napus] (GB:BAA78331.1); similar to Os02g0541300 [Oryza sa"
MSGI1_84425	F7SND4004IBZ9E	23.7	59.9	25.2	36.5	1.3	0	0	0	lipid metabolism.Phospholipid synthesis	"EMB1075 (EMBRYO DEFECTIVE 1075); carboxy-lyase  similar to GAD2 (GLUTAMATE DECARBOXYLASE 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G65960.1); similar to serine decarboxylase [Brassica napus] (GB:BAA78331.1); similar to Os02g0541300 [Oryza sa"
MSGI1_113957	F7SND4004IC2YR	6	9.7	24.2	7.6	0	0	-2	0	signalling.calcium	ACA10 (autoinhibited Ca2+ -ATPase 10); calcium-transporting ATPase/ calmodulin binding one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain. Identical to Pu
MSGI1_67692	F7SND4004IC3GB	7.1	16.3	26.3	18.9	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_76370	F7SND4004IC5A0	56.9	76.9	237.3	374.9	0	0	-2.1	-2.3	not assigned.unknown	not assigned.unknown
MSGI1_35223	F7SND4004ICGMQ	47.6	30.1	20.8	29.5	0	0	1.2	0	stress.abiotic.heat	"SHD (SHEPHERD); ATP binding encodes an ortholog of GRP94, an ER-resident HSP90-like protein and is involved in regulation of meristem size and organization. Single and double mutant analyses suggest that SHD may be required for the correct folding and/or"
MSGI1_27099	F7SND4004ICW7W	77.1	86.7	178.6	90.8	0	0	-1.2	0	amino acid metabolism.degradation.serine-glycine-cysteine group.glycine	"glycine dehydrogenase (decarboxylating), putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative  Identical to Glycine dehydrogenase [decarboxylating], mitochondrial precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine"
MSGI1_32337	F7SND4004ICXHF	89.4	36.4	19.3	50.2	-1.3	1.4	2.2	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S9 (RPS9C)  Identical to 40S ribosomal protein S9-2 (RPS9C) [Arabidopsis Thaliana] (GB:Q9FLF0); similar to 40S ribosomal protein S9 (RPS9B) [Arabidopsis thaliana] (TAIR:AT5G15200.1); similar to 40S ribosomal protein S9 [Catharanthus
MSGI1_88357	F7SND4004ICY5Z	155.4	139.8	507.3	213.8	0	-1.2	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_60678	F7SND4004ICYA6	26.7	160.9	44.2	235.7	2.6	2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_75382	F7SND4004IDITW	10.2	20.6	0.8	1.5	0	0	0	3.8	not assigned.unknown	not assigned.unknown
MSGI1_23043	F7SND4004IDIXD	32.4	43.6	28.2	15.9	0	0	0	1.5	not assigned.unknown	not assigned.unknown
MSGI1_33078	F7SND4004IDZZQ	6.2	31.3	16.4	36.6	2.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_88355	F7SND4004IE125	9.6	9.3	25.2	71.9	0	1.5	0	-3	not assigned.unknown	not assigned.unknown
MSGI1_24463	F7SND4004IE7RZ	105.6	221	137.1	168.9	1.1	0	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL	"4CL5 (4-COUMARATE:COA LIGASE 5); 4-coumarate-CoA ligase The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order:  p-coumaric acid, caffeic acid, 5-OH-ferul"
MSGI1_53538	F7SND4004IEFJO	2.2	22.3	2.5	11	3.3	0	0	0	protein.degradation.ubiquitin.E3.RING	U-box domain-containing protein  similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT1G67530.1); similar to armadillo/beta-catenin repeat family protein / U-box domain-containing
MSGI1_62398	F7SND4004IEH8W	160.2	225.3	1267.1	2167.8	0	0	-3	-3.3	not assigned.unknown	not assigned.unknown
MSGI1_71592	F7SND4004IEOKS	14.9	40.4	153.7	44	1.4	-1.8	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_27857	F7SND4004IEOO1	5.4	43.4	216	205.5	3	0	-5.3	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_50509	F7SND4004IEUTA	1.9	0.4	19.7	1.1	0	-4.2	-3.4	0	secondary metabolism.isoprenoids.carotenoids	"BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2); beta-carotene hydroxylase Converts &#946;-carotene to zeaxanthin via cryptoxanthin. similar to BETA-OHASE 1 (BETA-HYDROXYLASE 1), beta-carotene hydroxylase [Arabidopsis thaliana] (TAIR:AT4G25700.1); similar to"
MSGI1_117116	F7SND4004IEYJW	1.6	3	120.1	6.1	0	-4.3	-6.2	0	not assigned.unknown	not assigned.unknown
MSGI1_68946	F7SND4004IFCBK	1.3	25.1	4.9	13.6	4.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_88354	F7SND4004IFGF5	20.9	57.1	51.8	60.9	1.4	0	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_35919	F7SND4004IFIVS	26.3	55.8	23.5	57.5	1.1	1.3	0	0	hormone metabolism.auxin.signal transduction	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_35919	F7SND4004IFIVS	26.3	55.8	23.5	57.5	1.1	1.3	0	0	transport.misc	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_35919	F7SND4004IFIVS	26.3	55.8	23.5	57.5	1.1	1.3	0	0	transport.amino acids	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_53253	F7SND4004IFQBR	7.7	7.1	20.8	43.7	0	0	0	-2.6	development.unspecified	"plastid developmental protein DAG, putative  similar to plastid developmental protein DAG, putative [Arabidopsis thaliana] (TAIR:AT1G32580.1); similar to putative plastid protein [Oryza sativa (japonica cultivar-group)] (GB:BAC22214.1); similar to OSJNBa"
MSGI1_45204	F7SND4004IG32Z	1.6	1.5	16.4	6.4	0	0	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_50728	F7SND4004IG42A	22.7	27.9	205.5	349.6	0	0	-3.2	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_112679	F7SND4004IG7JU	18.1	58.7	34.6	44.1	1.7	0	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL	"4CL3 (4-coumarate:CoA ligase 3); 4-coumarate-CoA ligase encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infect"
MSGI1_50727	F7SND4004IG7UV	15	22.5	41.6	11.8	0	-1.8	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_113954	F7SND4004IGESU	0	0.3	12.3	9.5	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_60069	F7SND4004IGYG5	99.5	52.4	151.3	105.4	0	0	0	-1	PS.calvin cyle.GAP	"GAPA-2; glyceraldehyde-3-phosphate dehydrogenase  similar to GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT), glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G26650.1); similar to glyceraldehyde-3-phosphate dehydrogenas"
MSGI1_43531	F7SND4004IH0OZ	76	37.9	68.9	97.4	-1	0	0	-1.4	protein.synthesis.elongation	"AtRABE1b/AtRab8D (Arabidopsis Rab GTPase homolog E1b); translation elongation factor  Identical to Elongation factor Tu, chloroplast precursor (EF-Tu) (TUFA) [Arabidopsis Thaliana] (GB:P17745); similar to elongation factor Tu, putative / EF-Tu, putative"
MSGI1_66866	F7SND4004IH6M9	63.7	40.9	102	87.3	0	0	0	-1.1	PS.lightreaction.other electron carrier (ox/red).ferredoxin reductase	ATLFNR1 (LEAF FNR 1); NADPH dehydrogenase/ oxidoreductase Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase.  It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid.  The affinity of this enzyme for fer
MSGI1_34446	F7SND4004IHA59	8.4	17.4	54.1	84.8	0	0	-2.7	-2.3	cell wall.cell wall proteins.HRGP	hydroxyproline-rich glycoprotein family protein  similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT3G22440.1); similar to putative hydroxyproline-rich glycoprotein [Oryza sativa (japonica cultivar-group)] (GB:BAC836
MSGI1_64216	F7SND4004IHA7H	19.5	32.7	50	34.2	0	0	-1.4	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_64216	F7SND4004IHA7H	19.5	32.7	50	34.2	0	0	-1.4	0	development.unspecified	nodulin MtN21 family protein  similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT1G44800.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT58856.1); contains InterPro domain Protein of unknown function DUF
MSGI1_67277	F7SND4004IHB5O	0.1	1	14.4	3.6	0	0	-7.2	0	not assigned.unknown	not assigned.unknown
MSGI1_82540	F7SND4004IHC6K	48.3	41.3	38.9	98.8	0	1.3	0	-1.3	DNA.synthesis/chromatin structure	"NAP1;3 (NUCLEOSOME ASSEMBLY PROTEIN1;3); DNA binding  similar to NAP1,1 (NUCLEOSOME ASSEMBLY PROTEIN1,1), DNA binding [Arabidopsis thaliana] (TAIR:AT4G26110.1); similar to nucleosome assembly protein I-like protein; similar to mouse nap I, PIR Accession"
MSGI1_90445	F7SND4004IHDMS	6.8	8.6	22.5	1.7	0	-3.7	0	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	RAV1 (Related to ABI3/VP1 1); DNA binding / transcription factor Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a neg
MSGI1_41263	F7SND4004IHHE0	31.1	63.6	27	38.5	1	0	0	0	transport.amino acids	"amino acid permease, putative  Identical to Auxin transporter-like protein 1 (AUX1-like protein 1) (LAX1) [Arabidopsis Thaliana] (GB:Q9LFB2;GB:Q9SMW2); similar to amino acid permease, putative [Arabidopsis thaliana] (TAIR:AT2G21050.1); similar to AUX1 (A"
MSGI1_54323	F7SND4004IHJXT	31.7	58.7	164.8	87.8	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_34286	F7SND4004IHQDH	7.9	10.9	75.3	14.2	0	-2.4	-3.3	0	cell wall.modification	"ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2) member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-like A2 precursor (AtEXLA2) (AtEXPL2) (At-EXPL2) (Ath- ExpBeta-2.2) (EXLA2"
MSGI1_45440	F7SND4004IHTMO	49.3	23.2	116.6	32.7	0	-1.8	-1.2	0	transport.calcium	CAX3 (cation exchanger 3); cation:cation antiporter  Identical to Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger 3) (Ca(2+)/H(+) antiporter CAX3) (CAX3) [Arabidopsis Thaliana] (GB:Q93Z81;GB:O65022;GB:Q0WUY4;GB:Q9LKW8); similar to CAX1 (CATION
MSGI1_45440	F7SND4004IHTMO	49.3	23.2	116.6	32.7	0	-1.8	-1.2	0	transport.metal	CAX3 (cation exchanger 3); cation:cation antiporter  Identical to Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger 3) (Ca(2+)/H(+) antiporter CAX3) (CAX3) [Arabidopsis Thaliana] (GB:Q93Z81;GB:O65022;GB:Q0WUY4;GB:Q9LKW8); similar to CAX1 (CATION
MSGI1_45203	F7SND4004IHUG2	0.1	0.1	56.7	65	0	0	-9.1	-9.3	cell wall.cell wall proteins.HRGP	hydroxyproline-rich glycoprotein family protein  similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT4G14900.1); similar to Os03g0794900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051543.1); similar to putativ
MSGI1_36885	F7SND4004II1ET	72.1	63.5	43.5	95.7	0	1.1	0	0	tetrapyrrole synthesis.magnesium chelatase	GUN5 (GENOMES UNCOUPLED 5) Encodes magnesium chelatase involved in plastid-to-nucleus signal transduction. similar to Mg protoporphyrin IX chelatase [Nicotiana tabacum] (GB:AAB97152.1); similar to protoporphyrin IX:Mg Chelatase [Antirrhinum majus] (GB:CA
MSGI1_67276	F7SND4004II2M9	166.3	157.1	299.4	99.9	0	-1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_65296	F7SND4004II4UG	10.6	37.3	54.2	21.4	1.8	-1.3	-2.4	0	development.unspecified	TET8 (TETRASPANIN8) Member of TETRASPANIN family similar to TET9 (TETRASPANIN9) [Arabidopsis thaliana] (TAIR:AT4G30430.1); similar to senescence-associated protein 5 [Hemerocallis hybrid cultivar] (GB:AAC34855.1); contains InterPro domain CD9/CD37/CD63 an
MSGI1_115874	F7SND4004II73Z	20.5	12.9	54.3	7.1	0	-2.9	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_96487	F7SND4004IIDRC	0	0	5.4	10.8	0	0	0	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_68531	F7SND4004IIM1F	1.3	5.7	33.6	8.9	0	-1.9	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_47130	F7SND4004IIV93	9.1	20.9	55.3	21.6	0	-1.4	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_79600	F7SND4004IIY37	5.7	19.9	27.8	10.5	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_123038	F7SND4004IJ09R	1.6	3.2	22.4	7.9	0	0	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_51452	F7SND4004IJ6E2	0.6	1	22	11.5	0	0	-5.2	0	stress.abiotic.heat	HSP81-1 (HEAT SHOCK PROTEIN 81-1); ATP binding / unfolded protein binding Encodes a cytosolic heat shock protein AtHSP90.1.  AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance. Ide
MSGI1_54320	F7SND4004IJ795	16.4	21.5	42.7	32.3	0	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_30668	F7SND4004IJF48	32.2	37.2	89.9	62.8	0	0	-1.5	0	amino acid metabolism.degradation.serine-glycine-cysteine group.glycine	"glycine dehydrogenase (decarboxylating), putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative  Identical to Putative glycine dehydrogenase [decarboxylating] 2, mitochondrial precursor (EC 1.4.4.2) (Glycine decarboxylas"
MSGI1_36310	F7SND4004IJFVZ	12.5	16.2	93.5	75.7	0	0	-2.9	-2.2	RNA.regulation of transcription.EIN3-like(EIL) transcription factor family	"EIN3 (ETHYLENE-INSENSITIVE3); transcription factor ethylene-insensitive3 Identical to ETHYLENE-INSENSITIVE3 protein (EIN3) [Arabidopsis Thaliana] (GB:O24606;GB:Q8VYW4); similar to EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1), transcription factor [Arabidopsis tha"
MSGI1_36310	F7SND4004IJFVZ	12.5	16.2	93.5	75.7	0	0	-2.9	-2.2	hormone metabolism.ethylene.signal transduction	"EIN3 (ETHYLENE-INSENSITIVE3); transcription factor ethylene-insensitive3 Identical to ETHYLENE-INSENSITIVE3 protein (EIN3) [Arabidopsis Thaliana] (GB:O24606;GB:Q8VYW4); similar to EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1), transcription factor [Arabidopsis tha"
MSGI1_27856	F7SND4004IJG49	43.1	23.8	10.3	16.8	0	0	2.1	0	secondary metabolism.phenylpropanoids	transferase family protein  similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT2G39980.1); similar to AER [Nicotiana tabacum] (GB:AAM73656.1); contains InterPro domain Transferase; (InterPro:IPR003480)
MSGI1_34693	F7SND4004IJGXM	12.7	22.4	1.9	2.8	0	0	0	3	not assigned.unknown	not assigned.unknown
MSGI1_73480	F7SND4004IJHJ4	0	0.4	14.6	5.3	0	0	-4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_96486	F7SND4004IJLNY	0.1	0.1	26.1	8.3	0	0	-8	0	secondary metabolism.simple phenols	"LAC2 (laccase 2); copper ion binding / oxidoreductase putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1)"
MSGI1_35918	F7SND4004IJOIH	35.9	18.2	10.4	13.5	0	0	1.8	0	secondary metabolism.phenylpropanoids	transferase family protein  similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT2G39980.1); similar to AER [Nicotiana tabacum] (GB:AAM73656.1); contains InterPro domain Transferase; (InterPro:IPR003480)
MSGI1_34692	F7SND4004IJVVK	104.9	84.4	459.6	614.6	0	0	-2.1	-2.9	PS.lightreaction.photosystem I.LHC-I	LHCA4 (Photosystem I light harvesting complex gene 4); chlorophyll binding Encodes a chlorophyll a/b-binding protein that is more similar to the PSI Cab proteins than the PSII cab proteins. The predicted protein is about 20 amino acids shorter than most
MSGI1_43965	F7SND4004IK1P9	9.3	31.4	25.6	11.1	1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_57613	F7SND4004IK3RH	18.2	46.6	34.6	33.2	1.4	0	0	0	hormone metabolism.auxin.signal transduction	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_57613	F7SND4004IK3RH	18.2	46.6	34.6	33.2	1.4	0	0	0	transport.amino acids	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_57613	F7SND4004IK3RH	18.2	46.6	34.6	33.2	1.4	0	0	0	transport.misc	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_38772	F7SND4004IK650	87	33.8	159.3	212.8	-1.4	0	0	-2.7	misc.acid and other phosphatases	ATPAP9/PAP9 (purple acid phosphatase 9); acid phosphatase/ protein serine/threonine phosphatase  similar to calcineurin-like phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT1G13900.1); similar to Os07g0111600 [Oryza sativa (japonica cultivar
MSGI1_57612	F7SND4004IKA4R	102.3	173.4	93.6	80.4	0	0	0	1.1	amino acid metabolism.synthesis.aspartate family.methionine.S-adenosylmethionine synthetase	SAM1 (S-adenosylmethionine synthetase 1); methionine adenosyltransferase encodes a S-adenosylmethionine synthetase. SAM1 is regulated by protein S-nitrosylation. The covalent binding of nitric oxide (NO) to the Cys114 residue inhibits the enzyme activity
MSGI1_32470	F7SND4004IKG8I	2	9.3	24.1	6.9	0	0	-3.6	0	secondary metabolism.isoprenoids.non-mevalonate pathway.DXR	"DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE) 1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) catalyzes the first committed step of the 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis. In Arabidopsis, DXR is encoded"
MSGI1_34103	F7SND4004IKK1G	104.7	58.7	43.3	116.2	0	1.4	1.3	-1	PS.calvin cyle.GAP	"GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase Encodes chloroplast localized glyceraldehyde-3-phosphate dehydrogenase. Identical to Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor (EC"
MSGI1_85667	F7SND4004IKKUW	0.2	0.2	9.5	17.1	0	0	0	-6.4	not assigned.unknown	not assigned.unknown
MSGI1_35917	F7SND4004IKUOT	45.5	99.2	46.2	46.7	1.1	0	0	1.1	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_35917	F7SND4004IKUOT	45.5	99.2	46.2	46.7	1.1	0	0	1.1	major CHO metabolism.degradation.sucrose.Susy	SUS1 (SUCROSE SYNTHASE 1); UDP-glycosyltransferase/ sucrose synthase Encodes a protein with sucrose synthase activity (SUS1). Identical to Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase) (SUS1) [Arabidopsis Thaliana] (GB:P49040); similar
MSGI1_35917	F7SND4004IKUOT	45.5	99.2	46.2	46.7	1.1	0	0	1.1	cell wall	SUS1 (SUCROSE SYNTHASE 1); UDP-glycosyltransferase/ sucrose synthase Encodes a protein with sucrose synthase activity (SUS1). Identical to Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase) (SUS1) [Arabidopsis Thaliana] (GB:P49040); similar
MSGI1_116591	F7SND4004IKW8J	6.2	10.6	29.9	8.9	0	-1.7	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_40723	F7SND4004IL06L	36.3	81.3	179.9	52.6	1.2	-1.8	-2.3	0	hormone metabolism.auxin.induced-regulated-responsive-activated	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15450.1); similar to unknown [Glycine max] (GB:AAG00940.1); contains domain no description (G3D.3.60.20.10); contains domain N-terminal nucleophile aminohydrolases (Ntn hydrolases) (SSF56235)
MSGI1_49536	F7SND4004IL1C7	3	1.4	9.2	16.5	0	0	0	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_36880	F7SND4004IL3ST	60.3	102	39.9	40.7	0	0	0	1.3	cell wall.cell wall proteins.HRGP	hydroxyproline-rich glycoprotein family protein  similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT4G14900.1); similar to Os03g0794900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051543.1); similar to putativ
MSGI1_83778	F7SND4004IL5A4	20.9	18.8	2.2	4.9	0	0	3.2	0	protein.synthesis.initiation	"eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative  Identical to Eukaryotic translation initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3d) (p66) (TIF3D1) [Arabidopsis Thaliana] (GB:P56820); similar to"
MSGI1_117472	F7SND4004IL88C	4.1	8.7	147.2	18.1	0	-3	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_61752	F7SND4004ILOIT	269.9	166.1	142.8	283.3	0	1	0	0	PS.lightreaction.photosystem II.LHC-II	LHCB2.1 (Photosystem II light harvesting complex gene 2.1); chlorophyll binding Lhcb2.1 protein encoding a subunit of the light harvesting complex II. Member of a gene family with high degree of sequence similarity. Initially LHCB2.3 was considered as a
MSGI1_43530	F7SND4004ILW6D	0.1	0.2	2.4	12.2	0	0	0	-5.9	not assigned.unknown	not assigned.unknown
MSGI1_32469	F7SND4004IM0QB	20.9	5.5	39.3	9.7	0	-2	0	0	cell wall	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_32469	F7SND4004IM0QB	20.9	5.5	39.3	9.7	0	-2	0	0	secondary metabolism.simple phenols	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_49105	F7SND4004IM1L2	5.2	11.5	51.4	27.2	0	0	-3.3	0	stress.biotic	"secretory protein, putative  similar to plant basic secretory protein (BSP) family protein [Arabidopsis thaliana] (TAIR:AT2G15130.1); similar to NtPRp27 [Nicotiana tabacum] (GB:BAA81904.1); contains InterPro domain Plant Basic Secretory Protein; (InterPr"
MSGI1_24968	F7SND4004IM2IJ	167.6	96.8	75.9	99.6	0	0	1.1	0	stress.abiotic.heat	HSP70 (heat shock protein 70); ATP binding  similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G
MSGI1_47760	F7SND4004IM9YT	910.5	836.8	454.8	451.1	0	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_79599	F7SND4004IMAK3	3	4.3	59.7	21.3	0	-1.5	-4.3	-2.3	not assigned.unknown	not assigned.unknown
MSGI1_43757	F7SND4004IMGX9	28.8	18	146.3	7.6	0	-4.3	-2.3	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1)"
MSGI1_43757	F7SND4004IMGX9	28.8	18	146.3	7.6	0	-4.3	-2.3	0	"misc.gluco-, galacto- and mannosidases"	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1)"
MSGI1_50272	F7SND4004IMK0O	9.2	43.7	18.4	35.6	2.2	0	0	0	transport.amino acids	"ProT2 (PROLINE TRANSPORTER 2); amino acid permease Encodes a proline transporter with affinity for gly betaine, proline, and GABA.  Protein is expressed most highly in the roots. similar to ProT1 (PROLINE TRANSPORTER 1) [Arabidopsis thaliana] (TAIR:AT2G3"
MSGI1_112328	F7SND4004IMS0D	44.3	56.4	72.9	163.7	0	1.2	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_78994	F7SND4004IMZCW	31.8	40.8	19	50.2	0	1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_49781	F7SND4004IN15A	0	0	8.6	11.9	0	0	0	-4.6	"cell wall.degradation.cellulases and beta -1,4-glucanases"	glycosyl hydrolase family 5 protein / cellulase family protein  similar to glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] (TAIR:AT4G28320.1); similar to putative (1-4)-beta-mannan endohydrolase [Oryza sativa (japoni
MSGI1_49781	F7SND4004IN15A	0	0	8.6	11.9	0	0	0	-4.6	"misc.gluco-, galacto- and mannosidases"	glycosyl hydrolase family 5 protein / cellulase family protein  similar to glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] (TAIR:AT4G28320.1); similar to putative (1-4)-beta-mannan endohydrolase [Oryza sativa (japoni
MSGI1_112327	F7SND4004IN81K	0.8	0.1	46.5	19.9	0	0	-5.9	-7.6	not assigned.unknown	not assigned.unknown
MSGI1_71153	F7SND4004INCHZ	0	0	12.3	12.9	0	0	-4.6	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_29073	F7SND4004INMYV	311.9	392.5	1253.2	689.6	0	0	-2	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.COMT	ATOMT1 (O-METHYLTRANSFERASE 1) A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay.  AtOMT1 (At5g54160) encodes a flavonol 3?-O-methyltransferase that is highly active towards quercetin and myr
MSGI1_48015	F7SND4004INVJ6	7	115.6	38	164.9	4	2.1	-2.4	0	protein.degradation.subtilases	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_48015	F7SND4004INVJ6	7	115.6	38	164.9	4	2.1	-2.4	0	cell wall	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_79598	F7SND4004INYGY	11.3	11.6	52.1	14.1	0	-1.9	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_30666	F7SND4004IO3BH	148	173.1	300.7	365.4	0	0	0	-1.1	not assigned.unknown	not assigned.unknown
MSGI1_41652	F7SND4004IO71F	8.4	27.2	113.9	163.9	0	0	-3.8	-2.6	not assigned.unknown	not assigned.unknown
MSGI1_114709	F7SND4004IOEG3	47.8	106.1	70.6	52	1.2	0	0	1	not assigned.unknown	not assigned.unknown
MSGI1_70297	F7SND4004IOF6U	15.9	21.1	81.6	18.5	0	-2.1	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_39335	F7SND4004IOQQJ	36.6	1	57.4	0.6	-5.2	-6.6	0	0	major CHO metabolism.degradation.sucrose.invertases.vacuolar	"beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar  similar to ATBETAFRUCT4/VAC-INV (VACUOLAR INVERTASE), beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G12240.1); similar to"
MSGI1_38125	F7SND4004IOTQK	4.3	38.8	64.9	48.2	3.2	0	-3.9	0	hormone metabolism.auxin.induced-regulated-responsive-activated	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15450.1); similar to unknown [Glycine max] (GB:AAG00940.1); contains domain no description (G3D.3.60.20.10); contains domain N-terminal nucleophile aminohydrolases (Ntn hydrolases) (SSF56235)
MSGI1_51707	F7SND4004IP88I	10.1	26.6	36.1	17.1	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_67273	F7SND4004IPIDN	23.8	27.9	109.6	104.5	0	0	-2.2	-1.9	amino acid metabolism.synthesis.central amino acid metabolism.alanine.alanine aminotransferase	AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2); alanine transaminase Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1 similar to GGT1 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1) [Arabidopsis thaliana] (TAIR:AT1G23310.1); similar to
MSGI1_67273	F7SND4004IPIDN	23.8	27.9	109.6	104.5	0	0	-2.2	-1.9	PS.aminotransferases peroxisomal	AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2); alanine transaminase Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1 similar to GGT1 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1) [Arabidopsis thaliana] (TAIR:AT1G23310.1); similar to
MSGI1_26107	F7SND4004IPJ52	100.5	181.9	65.4	86.5	0	0	0	1.1	cell wall.cell wall proteins.HRGP	hydroxyproline-rich glycoprotein family protein  similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT4G14900.1); similar to Os03g0794900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051543.1); similar to putativ
MSGI1_106958	F7SND4004IPNQL	0.7	1.1	14.5	1.3	0	-3.5	-4.4	0	not assigned.unknown	not assigned.unknown
MSGI1_83773	F7SND4004IPQ2K	0.6	9.8	0.9	16.2	0	4.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_42811	F7SND4004IPW3B	29.5	39.7	611.6	33.9	0	-4.2	-4.4	0	minor CHO metabolism.myo-inositol.InsP Synthases	"MI-1-P SYNTHASE (Myo-inositol-1-phosphate synthase); inositol-3-phosphate synthase Columbia myo-inositol-1-phosphate synthase mRNA, complete Identical to Inositol-3-phosphate synthase isozyme 1 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 1) (MI-1-P"
MSGI1_116342	F7SND4004IPWUV	36.7	53.4	125.2	145	0	0	-1.8	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_46095	F7SND4004IPZF7	45.9	39.6	55.6	92.4	0	0	0	-1.2	signalling.calcium	CAM7 (CALMODULIN 7); calcium ion binding EF hand domain protein encodes a calmodulin. Can functionally complement a yeast CaM mutant. Identical to Calmodulin-7 (CaM-7) (CAM7) [Arabidopsis Thaliana] (GB:P59220); Identical to Calmodulin-6 (CaM-6) (CAM6) [A
MSGI1_38947	F7SND4004IQ0ON	56.7	47.8	36.1	72.2	0	1	0	0	RNA.processing	"PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed."
MSGI1_78988	F7SND4004IQBM4	4.5	8.4	43.2	24.1	0	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_38123	F7SND4004IQPEE	36.8	50.2	17.4	52.4	0	1.6	0	0	RNA.regulation of transcription	PTAC2 (PLASTID TRANSCRIPTIONALLY ACTIVE2); binding Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G02860.1); simila
MSGI1_31193	F7SND4004IQXJ9	64.8	70.5	763.4	720.3	0	0	-3.6	-3.4	not assigned.unknown	not assigned.unknown
MSGI1_47121	F7SND4004IR0XG	8.1	9.4	66	32	0	0	-3	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_49533	F7SND4004IR74Z	7.3	17.1	32.3	38.7	0	0	-2.1	0	misc.glutathione S transferases	ATGSTF9 (Arabidopsis thaliana Glutathione S-transferase (class phi) 9); glutathione transferase Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTF10 (EARLY DEHYDRATIO
MSGI1_34689	F7SND4004IR7MB	64.2	36.6	87.2	97.7	0	0	0	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_55368	F7SND4004IR81Q	31.6	10.5	9.5	21.9	-1.6	0	1.7	0	PS.photorespiration.glycine cleavage	"glycine cleavage system H protein, mitochondrial, putative  Identical to Probable glycine cleavage system H protein 2, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q9LQL0); similar to GDCH (Glycine decarboxylase complex H) [Arabidopsis thaliana] (T"
MSGI1_53248	F7SND4004IRAA9	47	56.7	65.6	132.3	0	1	0	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_27778	F7SND4004IRDFY	4.2	40.8	113.5	142.8	3.3	0	-4.8	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_52193	F7SND4004IRDH2	0	0	10.1	20.5	0	0	0	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_53247	F7SND4004IRQY8	123.9	35.6	34.4	67.2	-1.8	1	1.8	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_87680	F7SND4004IRWJ3	622.2	309.9	97.4	115.1	-1	0	2.7	1.4	cell.organisation	"TUA4 (tubulin alpha-4 chain) Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers. Identical to Tubulin alpha-6 chain (TUBA6) [Arabidopsis Thaliana] (GB:P29511); Identical to Tubulin alpha-2/alpha-4 chain (TUBA4) [Arabidopsis T"
MSGI1_44740	F7SND4004IRWT2	47.5	31.1	16.4	41.3	0	1.3	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_36307	F7SND4004IS08E	32	16.6	21.3	44.3	0	0	0	-1.4	secondary metabolism.isoprenoids.non-mevalonate pathway	geranylgeranyl reductase Encodes for a multifunctional protein with geranylgeranyl reductase activity shown to catalyze the reduction of prenylated geranylgeranyl-chlorophyll a to phytyl-chlorophyll a (chlorophyll a) and free geranylgeranyl pyrophosphate
MSGI1_113728	F7SND4004IS551	8.6	29.1	8.2	17.5	1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_54581	F7SND4004IS6HY	1.4	1.3	72.1	92.8	0	0	-5.7	-6.2	not assigned.unknown	not assigned.unknown
MSGI1_26024	F7SND4004ISAR1	34.6	60	26.6	59	0	1.1	0	0	transport.p- and v-ATPases	"AHA6 (ARABIDOPSIS H(+)-ATPASE 6); ATPase  Identical to ATPase 6, plasma membrane-type (EC 3.6.3.6) (Proton pump 6) (AHA6) [Arabidopsis Thaliana] (GB:Q9SH76); similar to AHA8 (ARABIDOPSIS H(+)-ATPASE 8), ATPase [Arabidopsis thaliana] (TAIR:AT3G42640.1); s"
MSGI1_91173	F7SND4004ISFWM	55.1	38.7	142	46.5	0	-1.6	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_45195	F7SND4004ISJ7U	0.1	0.1	5.3	10.8	0	0	0	-6.8	development.unspecified	AGO1 (ARGONAUTE 1) Encodes an RNA Slicer that selectively recruits microRNAs and siRNAs.  There is currently no evidence that AGO1 Slicer is in a high molecular weight RNA-induced silencing complex (RISC).  Mutants are defective in post-transcriptional g
MSGI1_45195	F7SND4004ISJ7U	0.1	0.1	5.3	10.8	0	0	0	-6.8	RNA.regulation of transcription.Argonaute	AGO1 (ARGONAUTE 1) Encodes an RNA Slicer that selectively recruits microRNAs and siRNAs.  There is currently no evidence that AGO1 Slicer is in a high molecular weight RNA-induced silencing complex (RISC).  Mutants are defective in post-transcriptional g
MSGI1_51187	F7SND4004ISKMN	2.4	6.4	25.3	11.5	0	0	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_53245	F7SND4004ISLNH	43.5	17	16	11.8	-1.4	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_32909	F7SND4004ISVLI	11.8	15.6	31.2	201.1	0	2.7	0	-3.7	major CHO metabolism.degradation.starch.starch cleavage	"BMY5 (beta-amylase 5); beta-amylase  similar to ATBETA-AMY (BETA-AMYLASE), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G15210.1); similar to beta-amylase [Glycine max] (GB:AAY40266.1); similar to Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant"
MSGI1_39149	F7SND4004ISWW6	48.6	112	28.8	61.6	1.2	1.1	0	0	major CHO metabolism.degradation.sucrose.Susy	"SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups Encodes a protein with sucrose synthase activity (SUS4). similar to SUS1 (SUCROSE SYNTHASE 1), UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TA"
MSGI1_39149	F7SND4004ISWW6	48.6	112	28.8	61.6	1.2	1.1	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_106957	F7SND4004IT0R0	52.2	79.3	40.2	112.3	0	1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_48012	F7SND4004IT99U	19.9	11.9	57.2	106.8	0	0	-1.5	-3.2	PS.lightreaction.photosystem II.PSII polypeptide subunits	"photosystem II reaction center W (PsbW) protein-related Encodes a protein similar to photosystem II reaction center subunit W. Identical to Photosystem II reaction center W protein, chloroplast precursor (PSII 6.1 kDa protein) (PSBW) [Arabidopsis Thalian"
MSGI1_32578	F7SND4004ITLO3	2.6	4.3	86.1	28.5	0	-1.6	-5	-2.7	not assigned.unknown	not assigned.unknown
MSGI1_91171	F7SND4004ITQ6X	3.9	13.6	95.3	13.6	0	-2.8	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_51185	F7SND4004ITWDT	9.4	13.3	115.5	162.9	0	0	-3.6	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_45428	F7SND4004IU7PI	2.6	7	127.5	47.1	0	-1.4	-5.6	-2.8	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	"CAD4 (CINNAMYL ALCOHOL DEHYDROGENASE 4); cinnamyl-alcohol dehydrogenase Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use caffeyl, coniferyl and  d-hydroxyconiferyl alde"
MSGI1_54579	F7SND4004IUAYI	0.2	0.1	10.3	17.5	0	0	0	-7.5	not assigned.unknown	not assigned.unknown
MSGI1_111679	F7SND4004IUMIJ	5.9	37.9	29.5	71.7	2.7	1.3	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_51706	F7SND4004IUVM6	610.4	606.8	349	780.7	0	1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_115407	F7SND4004IUVOH	0	0	3.7	16.7	0	0	0	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_42439	F7SND4004IUWQY	6.1	13.4	41	13.7	0	-1.6	-2.7	0	cell wall	"ATTPS6 (Arabidopsis thaliana trehalose phosphatase/synthase 6); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that"
MSGI1_42439	F7SND4004IUWQY	6.1	13.4	41	13.7	0	-1.6	-2.7	0	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS6 (Arabidopsis thaliana trehalose phosphatase/synthase 6); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that"
MSGI1_35365	F7SND4004IV5H9	1.9	2.9	41.8	20.7	0	0	-4.5	-2.8	not assigned.unknown	not assigned.unknown
MSGI1_123923	F7SND4004IV817	0	0	11	13.3	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_35220	F7SND4004IV9OG	1.7	2.3	14.6	6.6	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_25701	F7SND4004IVLVW	7.6	22.2	79.1	33.2	0	-1.3	-3.4	0	protein.postranslational modification	"CIPK4 (CBL-INTERACTING PROTEIN KINASE 4); kinase CBL-interacting protein kinase similar to CIPK7 (CBL-INTERACTING PROTEIN KINASE 7), kinase [Arabidopsis thaliana] (TAIR:AT3G23000.1); similar to CBL-interacting protein kinase 5 [Populus trichocarpa] (GB:A"
MSGI1_52463	F7SND4004IVMQI	76.7	37.3	23.9	43.4	-1	0	1.7	0	mitochondrial electron transport / ATP synthesis.F1-ATPase	"ATP synthase beta chain, mitochondrial, putative  Identical to ATP synthase subunit beta-3, mitochondrial precursor (EC 3.6.3.14) [Arabidopsis Thaliana] (GB:Q9C5A9); similar to ATP synthase beta chain 1, mitochondrial [Arabidopsis thaliana] (TAIR:AT5G086"
MSGI1_102302	F7SND4004IVMYK	0	0	14.7	21.9	0	0	-4.9	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_42040	F7SND4004IVOU5	7.6	25.5	41.8	14.8	0	-1.5	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_62772	F7SND4004IVS6U	0.3	0.2	15	18.2	0	0	-5.6	-6.5	transport.amino acids	amino acid transporter family protein  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G08230.2); similar to Os05g0586500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056462.1); similar to Os01g0621200 [Oryza sativa (japonica cultivar-gr
MSGI1_45427	F7SND4004IW0EU	2.4	3.8	86.8	2.4	0	-5.2	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_30967	F7SND4004IW1CA	76.1	41.7	27.5	79	0	1.5	1.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L15 (RPL15B)  Identical to 60S ribosomal protein L15-2 (RPL15B) [Arabidopsis Thaliana] (GB:Q8VYF1;GB:O23582); Identical to 60S ribosomal protein L15-1 (RPL15A) [Arabidopsis Thaliana] (GB:O23515); similar to 60S ribosomal protein L15
MSGI1_35772	F7SND4004IW3MZ	123.9	137.4	39.3	174.2	0	2.1	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_40353	F7SND4004IW3XG	5.9	8.5	44.5	4.5	0	-3.3	-2.9	0	minor CHO metabolism.myo-inositol.InsP Synthases	"inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative  Identical to Probable inositol-3-phosphate synthase isozyme 3 (EC 5.5.1.4) (Myo- inositol-1-phosphate synthase 3) (MI-1-P synthase 3) (IPS"
MSGI1_44958	F7SND4004IW4N0	0.5	0.7	32.2	0.8	0	-5.3	-6	0	not assigned.unknown	not assigned.unknown
MSGI1_117110	F7SND4004IW5Z7	16.9	15.1	40.5	43.7	0	0	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_40560	F7SND4004IWBHK	0.4	0.2	10.6	11.1	0	0	0	-5.8	not assigned.unknown	not assigned.unknown
MSGI1_41843	F7SND4004IWJL8	127.5	87.6	60.1	112.2	0	0	1.1	0	transport.H+ transporting pyrophosphatase	"AVP1 (vacuolar-type H+-pumping pyrophosphatase 1); ATPase Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including m"
MSGI1_24626	F7SND4004IX603	14.9	11.2	38.7	12.6	0	-1.6	0	0	N-metabolism.ammonia metabolism.glutamate synthase.ferredoxin dependent	GLU1 (FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1) Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression in leaves is induced by light and sucrose. Proposed to be involved in photorespiration and nitroge
MSGI1_86331	F7SND4004IX6ON	14.4	13.4	349.9	333.1	0	0	-4.6	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_112203	F7SND4004IXGFQ	0.9	0.4	416.8	546.7	0	0	-8.9	-10.4	not assigned.unknown	not assigned.unknown
MSGI1_27365	F7SND4004IXGMG	0	0	10.2	18.3	0	0	0	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_30223	F7SND4004IXMC2	32.6	50.3	77.2	26.3	0	-1.6	-1.2	0	cell wall.cellulose synthesis.cellulose synthase	"CESA4 (CELLULASE SYNTHASE 4); transferase, transferring glycosyl groups Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Identical to Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC 2.4.1.12) (AtCesA-4) (Irregular xyl"
MSGI1_43335	F7SND4004IXU96	32.8	49.7	101.9	76.9	0	0	-1.6	0	transport.p- and v-ATPases.H+-exporting ATPase	"AHA1 (PLASMA MEMBRANE PROTON ATPASE); ATPase plasma membrane proton ATPase Identical to ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1) (AHA1) [Arabidopsis Thaliana] (GB:P20649;GB:O64626); similar to AHA3 (Arabidopsis H(+)-ATPase 3), ATPase ["
MSGI1_80180	F7SND4004IXZ3J	19.8	6.2	154.8	7.4	0	-4.4	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_88346	F7SND4004IY5LE	30.4	64.6	101.6	62.8	1.1	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_50497	F7SND4004IYSCZ	1.8	3.1	19.7	15.1	0	0	-3.5	0	development.unspecified	nodulin MtN21 family protein  similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT1G44800.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT58856.1); contains InterPro domain Protein of unknown function DUF
MSGI1_50497	F7SND4004IYSCZ	1.8	3.1	19.7	15.1	0	0	-3.5	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_54576	F7SND4004IYZBD	15.6	61.5	13.8	51.9	2	1.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_35217	F7SND4004IZ09L	279	368.8	1393.7	610.6	0	-1.2	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_75862	F7SND4004IZG9B	125.3	117.1	357.4	147	0	-1.3	-1.5	0	secondary metabolism.flavonoids.isoflavonols	"isoflavone reductase, putative isoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress. Iden"
MSGI1_63146	F7SND4004IZHR7	65.1	25.8	34.8	16.1	-1.3	0	0	0	cell wall	"chitinase  similar to POM1 (POM-POM1), chitinase [Arabidopsis thaliana] (TAIR:AT1G05850.1); similar to chitinase-like protein [Gossypium hirsutum] (GB:AAQ56599.1); contains InterPro domain Glycoside hydrolase, family 19; (InterPro:IPR000726)"
MSGI1_63146	F7SND4004IZHR7	65.1	25.8	34.8	16.1	-1.3	0	0	0	stress.biotic	"chitinase  similar to POM1 (POM-POM1), chitinase [Arabidopsis thaliana] (TAIR:AT1G05850.1); similar to chitinase-like protein [Gossypium hirsutum] (GB:AAQ56599.1); contains InterPro domain Glycoside hydrolase, family 19; (InterPro:IPR000726)"
MSGI1_24548	F7SND4004IZKF5	17.9	7	2.8	4	0	0	2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_42226	F7SND4004IZOGH	6.7	20.8	43.9	26.9	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_91882	F7SND4004IZRR8	0.9	2.2	14.5	2	0	0	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_86327	F7SND4004IZU82	0	0	15.7	7.5	0	0	-5	0	protein.postranslational modification	"CKI1 (CASEIN KINASE I); casein kinase I/ kinase Phosphorylates serine or threonine residues that are near and C-terminal to acidic side chains on a variety of target proteins similar to CKL10 (Casein Kinase I-like 10), casein kinase I/ kinase [Arabidopsi"
MSGI1_102298	F7SND4004IZUMZ	28.7	14.5	7.8	7.3	0	0	1.9	0	cell wall	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_102298	F7SND4004IZUMZ	28.7	14.5	7.8	7.3	0	0	1.9	0	secondary metabolism.simple phenols	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_78984	F7SND4004IZWZQ	2.7	7.7	23.6	23.9	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_113949	F7SND4004IZX1W	1	14.9	1.8	8.5	3.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_33728	F7SND4004J0673	0.6	2.2	19.5	25.4	0	0	-5	-3.5	cell wall.cell wall proteins.HRGP	hydroxyproline-rich glycoprotein family protein  similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT3G22440.1); similar to putative hydroxyproline-rich glycoprotein [Oryza sativa (japonica cultivar-group)] (GB:BAC836
MSGI1_39669	F7SND4004J08QQ	25.3	13.6	99.4	86.6	0	0	-2	-2.7	PS.lightreaction.photosystem II.PSII polypeptide subunits	"PSBP-2 (photosystem II subunit P-2); calcium ion binding Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. similar to PSBP-1 (OXYGEN-EVOLVING ENHANCER PROTEIN 2), calcium ion binding"
MSGI1_123031	F7SND4004J0VAK	2.8	10.7	16.9	35.4	0	0	0	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_87047	F7SND4004J13A5	5.9	3.8	154.5	10.4	0	-3.9	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_44141	F7SND4004J1BS3	60.7	138.8	48.1	80	1.2	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_44141	F7SND4004J1BS3	60.7	138.8	48.1	80	1.2	0	0	0	major CHO metabolism.degradation.sucrose.Susy	"SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups Encodes a protein with sucrose synthase activity (SUS4). similar to SUS1 (SUCROSE SYNTHASE 1), UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TA"
MSGI1_23339	F7SND4004J1S7W	13.6	18.9	11.5	3.2	0	0	0	2.6	not assigned.unknown	not assigned.unknown
MSGI1_84412	F7SND4004J1UMA	2	8.7	22.7	15.1	0	0	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_36186	F7SND4004J3K4M	1.1	0.6	26.6	3.4	0	-3	-4.6	0	protein.postranslational modification	AHG3/ATPP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA); protein binding / protein phosphatase type 2C Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA.
MSGI1_38938	F7SND4004JAAQ4	8.5	9.2	144.8	57.2	0	-1.3	-4.1	-2.6	fermentation.aldehyde dehydrogenase	ALDH7B4 (ALDEHYDE DEHYDROGENASE 7B4); 3-chloroallyl aldehyde dehydrogenase Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 7B4 (EC 1.2.1.3) (Antiquitin-1) (Turgor- responsive ALDH) (ALDH7B4) [Arabidopsis Thaliana] (GB:Q9SYG7;GB:Q546B7); simila
MSGI1_58199	F7SND4004JAB7W	198.7	236.5	544.1	755.6	0	0	-1.5	-1.7	protein.aa activation	"UBQ11 (UBIQUITIN 11); protein binding polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14.  Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana"
MSGI1_64211	F7SND4004JAQIM	23.6	25.5	85.2	43.1	0	0	-1.9	0	amino acid metabolism.degradation.serine-glycine-cysteine group.glycine	"glycine dehydrogenase (decarboxylating), putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative  Identical to Putative glycine dehydrogenase [decarboxylating] 2, mitochondrial precursor (EC 1.4.4.2) (Glycine decarboxylas"
MSGI1_115093	F7SND4004JB3KM	12.5	19	83.6	18.7	0	-2.2	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_27965	F7SND4004JB689	34.5	20.1	8.5	14	0	0	2	0	secondary metabolism.phenylpropanoids	transferase family protein  similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT2G39980.1); similar to AER [Nicotiana tabacum] (GB:AAM73656.1); contains InterPro domain Transferase; (InterPro:IPR003480)
MSGI1_116444	F7SND4004JC24C	0	0	14.3	3	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_28730	F7SND4004JCBZB	37.6	55.5	79.8	70.8	0	0	-1.1	0	transport.p- and v-ATPases.H+-exporting ATPase	"AHA1 (PLASMA MEMBRANE PROTON ATPASE); ATPase plasma membrane proton ATPase Identical to ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1) (AHA1) [Arabidopsis Thaliana] (GB:P20649;GB:O64626); similar to AHA3 (Arabidopsis H(+)-ATPase 3), ATPase ["
MSGI1_56732	F7SND4004JCCXV	15.7	21.5	40.3	13.9	0	-1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_114358	F7SND4004JCED4	0	0	10.1	10.7	0	0	0	-4.4	protein.degradation.ubiquitin.proteasom	"26S proteasome regulatory subunit, putative (RPN7)  Identical to Probable 26S proteasome non-ATPase regulatory subunit 6 [Arabidopsis Thaliana] (GB:Q93Y35;GB:Q9SZX2); similar to FUS6 (FUSCA 6) [Arabidopsis thaliana] (TAIR:AT3G61140.1); similar to 26S pro"
MSGI1_117462	F7SND4004JCEL4	36.1	80.2	32.7	67.1	1.2	1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_72560	F7SND4004JCM5P	3	1.4	110.8	63.1	0	0	-5.2	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_47118	F7SND4004JCWL9	22.7	27.1	5.5	21.3	0	0	2	0	RNA.regulation of transcription	PTAC2 (PLASTID TRANSCRIPTIONALLY ACTIVE2); binding Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G02860.1); simila
MSGI1_54021	F7SND4004JCZOU	141.9	75.4	43.6	29.8	0	0	1.7	1.3	PS.lightreaction.photosystem I.PSI polypeptide subunits	"PSAF (photosystem I subunit F) Encodes subunit F of photosystem I. similar to photosystem I reaction center subunit III [Vigna radiata] (GB:AAD27880.2); contains InterPro domain Photosystem I reaction center protein PsaF, subunit III; (InterPro:IPR003666"
MSGI1_46727	F7SND4004JD5EE	87.8	7.2	44.7	40.4	-3.6	0	1	-2.5	not assigned.unknown	not assigned.unknown
MSGI1_66849	F7SND4004JDAON	59.8	83.4	40.4	91.9	0	1.2	0	0	redox.ascorbate and glutathione.ascorbate	"VTC2 (VITAMIN C DEFECTIVE 2) a gene encoding a novel protein is involved in ascorbate biosynthesis. recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxan"
MSGI1_51703	F7SND4004JDB96	13.7	19.2	40.8	22.7	0	0	-1.6	0	transport.unspecified anions	"anion exchange family protein  Identical to Putative boron transporter 2 [Arabidopsis Thaliana] (GB:Q9M1P7); similar to BOR1 (REQUIRES HIGH BORON 1), anion exchanger [Arabidopsis thaliana] (TAIR:AT2G47160.1); similar to anion exchange family protein [Ara"
MSGI1_113522	F7SND4004JDJI2	0.1	0.3	8.1	10.2	0	0	0	-5.1	cell. vesicle transport	"oxysterol-binding family protein  similar to UNE18 (unfertilized embryo sac 18), oxysterol binding [Arabidopsis thaliana] (TAIR:AT5G02100.1); similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT3G09300.1); similar to Os03g0274000 ["
MSGI1_29924	F7SND4004JDRM4	40.4	47.6	125.6	75	0	0	-1.6	0	PS.calvin cyle.rubisco interacting	"RCA (RUBISCO ACTIVASE) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco. Identical to Ribulose bisphosphate carboxylase/ox"
MSGI1_98073	F7SND4004JE9VN	876.9	1007.8	350.6	730.8	0	1.1	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_122845	F7SND4004JEQRX	17.3	30.1	54	27.7	0	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_90436	F7SND4004JEWEL	8.2	4.4	36.2	15	0	0	-2.1	0	protein.degradation.serine protease	"SCPL47 (serine carboxypeptidase-like 47); serine carboxypeptidase  similar to SCPL48 (serine carboxypeptidase-like 48), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G45010.1); similar to SCPL49 (serine carboxypeptidase-like 49), serine carboxy"
MSGI1_34683	F7SND4004JEX73	0.2	0.4	17.7	11	0	0	-6.5	-4.8	signalling.light	"leucine-rich repeat protein kinase, putative  similar to light repressible receptor protein kinase [Arabidopsis thaliana] (TAIR:AT4G29990.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G19230.1); similar to le"
MSGI1_34683	F7SND4004JEX73	0.2	0.4	17.7	11	0	0	-6.5	-4.8	signalling.receptor kinases.misc	"leucine-rich repeat protein kinase, putative  similar to light repressible receptor protein kinase [Arabidopsis thaliana] (TAIR:AT4G29990.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G19230.1); similar to le"
MSGI1_43330	F7SND4004JEYTD	166.5	342.8	83.4	202.5	1	1.3	1	0	cell wall	SUS1 (SUCROSE SYNTHASE 1); UDP-glycosyltransferase/ sucrose synthase Encodes a protein with sucrose synthase activity (SUS1). Identical to Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase) (SUS1) [Arabidopsis Thaliana] (GB:P49040); similar
MSGI1_43330	F7SND4004JEYTD	166.5	342.8	83.4	202.5	1	1.3	1	0	major CHO metabolism.degradation.sucrose.Susy	SUS1 (SUCROSE SYNTHASE 1); UDP-glycosyltransferase/ sucrose synthase Encodes a protein with sucrose synthase activity (SUS1). Identical to Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase) (SUS1) [Arabidopsis Thaliana] (GB:P49040); similar
MSGI1_43330	F7SND4004JEYTD	166.5	342.8	83.4	202.5	1	1.3	1	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_44948	F7SND4004JF1T6	5.8	13.2	28.9	26.5	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_95689	F7SND4004JFAS2	0	0.1	10.4	16.3	0	0	0	-7.3	not assigned.unknown	not assigned.unknown
MSGI1_73471	F7SND4004JFM5N	53.3	180.5	596	205.4	1.8	-1.5	-3.5	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT5G05960.1); similar to hypothetical protein [Plantago major]
MSGI1_55359	F7SND4004JFOLM	16.7	43.2	17	34	1.4	0	0	0	transporter.sugars.sucrose	"SUC2 (SUCROSE-PROTON SYMPORTER 2); carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter Encodes for a high-affinity  transporter essential for phloem loading and long-distance transport. A major sucrose transporter, AtSUC2 can also transpor"
MSGI1_41636	F7SND4004JG64X	1.8	7	50.9	53.1	0	0	-4.8	-2.9	not assigned.unknown	not assigned.unknown
MSGI1_105987	F7SND4004JG7W3	26.2	60.1	89.4	47.7	1.2	0	-1.8	0	stress.abiotic.heat	"heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)  Identical to Heat shock cognate 70 kDa protein 3 (Hsc70.3) (HSC70-3) [Arabidopsis Thaliana] (GB:O65719;GB:Q42345); similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR"
MSGI1_37045	F7SND4004JG8DT	13.7	31.3	56.3	55.3	0	0	-2	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	"phenylalanine ammonia-lyase, putative  Identical to Phenylalanine ammonia-lyase 4 (EC 4.3.1.5) (PAL4) [Arabidopsis Thaliana] (GB:Q9SS45;GB:Q53ZM8); similar to PAL2 (phenylalanine ammonia-lyase 2), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:"
MSGI1_85658	F7SND4004JGU5H	34.9	21.2	75.9	20.2	0	-1.9	-1.1	0	transporter.sugars	"ATINT1 (INOSITOL TRANSPORTER 1); carbohydrate transporter/ sugar porter  Identical to Probable inositol transporter 1 (INT1) [Arabidopsis Thaliana] (GB:Q8VZR6;GB:O22848); similar to ATINT2 (INOSITOL TRANSPORTER 2), carbohydrate transporter/ sugar porter"
MSGI1_47529	F7SND4004JH4HG	210.4	58.8	486.4	330.5	-1.8	0	-1.2	-2.5	TCA / org. transformation.carbonic anhydrases	"CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding  Identical to Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase) (CA1) [Arabidopsis Thaliana] (GB:P27140;GB:Q8RWW2;GB:Q93VR8); similar to CA2 (BETA CARBONIC A"
MSGI1_31065	F7SND4004JHATA	4.9	5.6	15.9	29.4	0	0	0	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_40175	F7SND4004JHD6U	0	0	18.7	44.6	0	1.3	-5.2	-6.5	not assigned.unknown	not assigned.unknown
MSGI1_34681	F7SND4004JHIBT	82.8	132.2	58.7	127.7	0	1.1	0	0	transport.p- and v-ATPases	"AHA5 (ARABIDOPSIS H(+)-ATPASE 5); ATPase  Identical to ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump 5) (AHA5) [Arabidopsis Thaliana] (GB:Q9SJB3); similar to AHA1 (PLASMA MEMBRANE PROTON ATPASE), ATPase [Arabidopsis thaliana] (TAIR:AT2G18960.1"
MSGI1_87675	F7SND4004JHK42	4.6	15.3	16.8	41.6	0	1.3	0	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_34436	F7SND4004JHSGZ	6.9	25.8	25.8	12.1	1.9	0	0	0	secondary metabolism.isoprenoids.non-mevalonate pathway.DXR	"DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE) 1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) catalyzes the first committed step of the 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis. In Arabidopsis, DXR is encoded"
MSGI1_57597	F7SND4004JHXKY	6.4	44.6	66.2	22.7	2.8	-1.5	-3.4	0	protein.targeting.secretory pathway.vacuole	ALPHA-VPE (ALPHA-VACUOLAR PROCESSING ENZYME); cysteine-type endopeptidase Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types
MSGI1_55646	F7SND4004JI0WR	36.2	40.8	19.6	50.5	0	1.4	0	0	hormone metabolism.auxin.signal transduction	ATPGP1 (ARABIDOPSIS THALIANA P GLYCOPROTEIN1); calmodulin binding Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR1.Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root.  E
MSGI1_55646	F7SND4004JI0WR	36.2	40.8	19.6	50.5	0	1.4	0	0	transport.ABC transporters and multidrug resistance systems	ATPGP1 (ARABIDOPSIS THALIANA P GLYCOPROTEIN1); calmodulin binding Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR1.Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root.  E
MSGI1_33593	F7SND4004JI0XU	14.8	22.7	52.7	17.4	0	-1.6	-1.8	0	misc.plastocyanin-like	plastocyanin-like domain-containing protein  similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G27520.1); similar to putative early nodulin-like 2 predicted GPI-anchored protein [Trifolium pratense] (GB:BAE71287.1); co
MSGI1_33593	F7SND4004JI0XU	14.8	22.7	52.7	17.4	0	-1.6	-1.8	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_33726	F7SND4004JI39L	20.2	36.5	82.4	67.4	0	0	-2	0	transport.p- and v-ATPases.H+-exporting ATPase	"AHA1 (PLASMA MEMBRANE PROTON ATPASE); ATPase plasma membrane proton ATPase Identical to ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1) (AHA1) [Arabidopsis Thaliana] (GB:P20649;GB:O64626); similar to AHA3 (Arabidopsis H(+)-ATPase 3), ATPase ["
MSGI1_36611	F7SND4004JI77P	20	73.5	15.7	57.7	1.9	1.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_30561	F7SND4004JI8GF	1.2	8	10.9	64.2	0	2.6	0	-3	protein.degradation.serine protease	"SCPL33 (serine carboxypeptidase-like 33); serine carboxypeptidase  similar to SCPL34, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G23210.1); similar to Os01g0332500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042932.1); similar to Os05"
MSGI1_50269	F7SND4004JIB16	0.1	0.1	10	11.4	0	0	0	-6.8	secondary metabolism.isoprenoids.mevalonate pathway.isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase	IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLLALLYL PYROPHOSPHATE ISOMERASE 2); isopentenyl-diphosphate delta-isomerase Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. Identical to Isopentenyl-diphosphate Delta-iso
MSGI1_37638	F7SND4004JIE8D	63.6	64.6	47.8	105	0	1.1	0	0	major CHO metabolism.synthesis.starch.starch synthase	"starch synthase, putative  Identical to Probable granule-bound starch synthase 1, chloroplast precursor (EC 2.4.1.242) (Granule-bound starch synthase I) (GBSS-I) (WAXY) [Arabidopsis Thaliana] (GB:Q9MAQ0); similar to glycogen synthase, putative [Arabidops"
MSGI1_39137	F7SND4004JIXU2	18.5	14.8	312.8	30.5	0	-3.4	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_22728	F7SND4004JJGSG	0	0	11.2	5.9	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_37482	F7SND4004JJQQ3	11.6	52.9	86	113.4	2.2	0	-2.9	-1.1	not assigned.unknown	not assigned.unknown
MSGI1_36300	F7SND4004JK1HA	33.2	63.5	27	88.6	0	1.7	0	0	protein.degradation.ubiquitin.E2	UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase ubiquitin conjugating enzyme Identical to SUMO-conjugating enzyme UBC9 (EC 6.3.2.-) (Ubiquitin-conjugating enzyme E2-17 kDa) (Ubiquitin-protein ligase 9) (Ubiquitin carrier protein 9) (UBCAT
MSGI1_44732	F7SND4004JK1M6	26.2	50.8	19.8	86.6	0	2.1	0	0	TCA / org. transformation.other organic acid transformaitons.malic	"ATNADP-ME2 (NADP-MALIC ENZYME 2); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME2 is presumably a cytosolic e"
MSGI1_71147	F7SND4004JKOQZ	36.3	59	98.9	50	0	0	-1.4	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	"CAD4 (CINNAMYL ALCOHOL DEHYDROGENASE 4); cinnamyl-alcohol dehydrogenase Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use caffeyl, coniferyl and  d-hydroxyconiferyl alde"
MSGI1_35355	F7SND4004JKZVW	16.3	40.6	109.9	42.5	0	-1.4	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_40715	F7SND4004JLAZ4	88	79.3	191.4	112.3	0	0	-1.1	0	glycolysis.UGPase	UGP (UDP-glucose pyrophosphorylase); UTP:glucose-1-phosphate uridylyltransferase Is thought to encode a cytosolic UDP-glucose pyrophosphorylase with strong similarity to potato UTP--glucose-1-phosphate uridylyltransferase.  Downregulated by flooding. Ide
MSGI1_25623	F7SND4004JLKTG	0.6	0	14.9	2.4	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_32572	F7SND4004JM2AI	54.6	58	47.2	90.6	0	0.9	0	0	"misc.gluco-, galacto- and mannosidases"	"glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT2G44450.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE86373.1); contains InterPro domain 6-phospho-beta-galacto"
MSGI1_32572	F7SND4004JM2AI	54.6	58	47.2	90.6	0	0.9	0	0	cell wall	"glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT2G44450.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE86373.1); contains InterPro domain 6-phospho-beta-galacto"
MSGI1_32327	F7SND4004JM8TQ	0	0	11.1	36.2	0	1.7	0	-6.2	not assigned.unknown	not assigned.unknown
MSGI1_75365	F7SND4004JMHLR	2.6	5.2	69.6	39.4	0	0	-4.7	-2.9	not assigned.unknown	not assigned.unknown
MSGI1_80172	F7SND4004JMN4S	31.1	58.4	65.2	67.8	0	0	-1.1	0	polyamine metabolism.synthesis.SAM decarboxylase	adenosylmethionine decarboxylase family protein  Identical to S-adenosylmethionine decarboxylase proenzyme 2 (EC 4.1.1.50) (AdoMetDC 2) (SamDC 2) [Contains: S-adenosylmethionine decarboxylase 2 alpha chain; S-adenosylmethionine decarboxylase 2 beta chain]
MSGI1_123097	F7SND4004JMNLM	124.7	63.5	59.3	60.8	0	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_39865	F7SND4004JMZDF	24.7	29.5	55.6	25	0	0	-1.2	0	transport.calcium	"ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8); calcium-transporting ATPase/ calmodulin binding Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the"
MSGI1_32119	F7SND4004JN2F4	0	0	6.1	14.2	0	0	0	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_85654	F7SND4004JN4ZZ	3	3	28.2	45.7	0	0	-3.2	-3.9	cell.division	regulator of chromosome condensation (RCC1) family protein  similar to regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] (TAIR:AT3G02510.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96878.1); contains InterP
MSGI1_123778	F7SND4004JN7MR	31.5	88.5	50.9	58.4	1.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_56726	F7SND4004JNMUW	22.6	31.9	72.6	69.2	0	0	-1.7	-1.1	protein.degradation.aspartate protease	aspartyl protease family protein  similar to pepsin A [Arabidopsis thaliana] (TAIR:AT1G62290.2); similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT4G04460.1); similar to aspartic protease (GB:AAB03108.1); similar to Aspartic prot
MSGI1_112430	F7SND4004JNOXG	44	22.4	4.8	16.8	0	0	3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_50021	F7SND4004JNRS0	2.3	22	20	136.6	3.3	2.8	-3.1	-2.6	not assigned.unknown	not assigned.unknown
MSGI1_67259	F7SND4004JNVFP	31.8	239.6	287	366.8	2.9	0	-3.2	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_111222	F7SND4004JO0IX	0	0	14	0	0	-4.8	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_58191	F7SND4004JO68T	2.3	6.4	40.1	36.3	0	0	-4.1	-2.5	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_58191	F7SND4004JO68T	2.3	6.4	40.1	36.3	0	0	-4.1	-2.5	development.unspecified	nodulin MtN21 family protein  similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT1G44800.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT58856.1); contains InterPro domain Protein of unknown function DUF
MSGI1_47112	F7SND4004JOK1W	229.1	170.4	85.1	192.8	0	1.2	1.4	0	transport.H+ transporting pyrophosphatase	"AVP1 (vacuolar-type H+-pumping pyrophosphatase 1); ATPase Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including m"
MSGI1_53524	F7SND4004JOQ7H	49	18.2	20.4	14.5	-1.4	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_31760	F7SND4004JP1ZV	4.3	11.2	12.6	53.6	0	2.1	0	-2.3	not assigned.unknown	not assigned.unknown
MSGI1_46077	F7SND4004JP8EN	113.7	68.9	119.2	150.7	0	0	0	-1.1	glycolysis.glyceraldehyde 3-phosphate dehydrogenase	GAPC (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced
MSGI1_67258	F7SND4004JP8FT	0	0	35.5	8.2	0	-2.1	-6.1	0	fermentation.aldehyde dehydrogenase	ALDH7B4 (ALDEHYDE DEHYDROGENASE 7B4); 3-chloroallyl aldehyde dehydrogenase Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 7B4 (EC 1.2.1.3) (Antiquitin-1) (Turgor- responsive ALDH) (ALDH7B4) [Arabidopsis Thaliana] (GB:Q9SYG7;GB:Q546B7); simila
MSGI1_34272	F7SND4004JP9LZ	17	28.4	61.1	45.1	0	0	-1.8	0	transport.p- and v-ATPases.H+-exporting ATPase	"AHA3 (Arabidopsis H(+)-ATPase 3); ATPase member of Plasma membrane H+-ATPase family Identical to ATPase 3, plasma membrane-type (EC 3.6.3.6) (Proton pump 3) (AHA3) [Arabidopsis Thaliana] (GB:P20431); similar to AHA1 (PLASMA MEMBRANE PROTON ATPASE), ATPas"
MSGI1_33591	F7SND4004JPC9W	58	22.1	61.2	28.7	-1.4	0	0	0	secondary metabolism.simple phenols	"IRX12/LAC4 (laccase 4); copper ion binding / oxidoreductase Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem ph"
MSGI1_52177	F7SND4004JPIZK	4.3	3.2	29	15.7	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_112298	F7SND4004JQ1RE	7.4	3.5	29.2	9.4	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_88340	F7SND4004JQ36H	59.6	84.3	2.1	4.1	0	0	4.8	4.4	not assigned.unknown	not assigned.unknown
MSGI1_75363	F7SND4004JQ484	1.7	1.9	27.3	4.5	0	-2.6	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_45183	F7SND4004JQJCN	5	3.7	22.8	1.4	0	-4	-2.2	0	"misc.gluco-, galacto- and mannosidases"	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT3G52840.1)"
MSGI1_45183	F7SND4004JQJCN	5	3.7	22.8	1.4	0	-4	-2.2	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT3G52840.1)"
MSGI1_41098	F7SND4004JQKTA	261.9	314.5	575.8	774.8	0	0	-1.1	-1.3	protein.aa activation	"UBQ11 (UBIQUITIN 11); protein binding polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14.  Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana"
MSGI1_59734	F7SND4004JQONB	20.6	28.4	95.1	49.9	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_77352	F7SND4004JQRFV	23.9	35.7	14.3	50.9	0	1.8	0	0	glycolysis.pyrophosphate-fructose-6-P phosphotransferase	"MEE51 (maternal effect embryo arrest 51); diphosphate-fructose-6-phosphate 1-phosphotransferase  similar to pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative [Ar"
MSGI1_38453	F7SND4004JQSLX	18.7	42.1	46.8	38.9	0	0	-1.3	0	"lipid metabolism.'exotics' (steroids, squalene etc).phosphatidylcholine+sterol O-acyltransferase"	lecithin:cholesterol acyltransferase family protein / LACT family protein  similar to lecithin:cholesterol acyltransferase family protein / LACT family protein [Arabidopsis thaliana] (TAIR:AT3G03310.1); similar to lecithine cholesterol acyltransferase-lik
MSGI1_32002	F7SND4004JQSUU	0	0	54.8	105.9	0	1	-6.8	-7.7	not assigned.unknown	not assigned.unknown
MSGI1_27962	F7SND4004JQXKM	9	12.4	217.7	10.1	0	-4.4	-4.6	0	minor CHO metabolism.myo-inositol.InsP Synthases	"inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative  Identical to Probable inositol-3-phosphate synthase isozyme 3 (EC 5.5.1.4) (Myo- inositol-1-phosphate synthase 3) (MI-1-P synthase 3) (IPS"
MSGI1_37184	F7SND4004JQY37	8.6	33.7	31.5	17.2	2	0	-1.9	0	secondary metabolism.isoprenoids.non-mevalonate pathway.DXR	"DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE) 1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) catalyzes the first committed step of the 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis. In Arabidopsis, DXR is encoded"
MSGI1_114062	F7SND4004JRACH	2.2	3.8	22.8	4.8	0	-2.2	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_44140	F7SND4004JRG0Q	59.5	59.2	39.1	81.1	0	1.1	0	0	protein.synthesis.elongation	elongation factor 1-alpha / EF-1-alpha  Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A) (A4) [Arabidopsis Thaliana] (GB:P13905); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar
MSGI1_35760	F7SND4004JRORL	85	117.2	29.2	84.1	0	1.5	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_39662	F7SND4004JRQ43	89.6	192.6	51.8	94.6	1.1	0	0	1	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_39662	F7SND4004JRQ43	89.6	192.6	51.8	94.6	1.1	0	0	1	cell wall	SUS1 (SUCROSE SYNTHASE 1); UDP-glycosyltransferase/ sucrose synthase Encodes a protein with sucrose synthase activity (SUS1). Identical to Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase) (SUS1) [Arabidopsis Thaliana] (GB:P49040); similar
MSGI1_39662	F7SND4004JRQ43	89.6	192.6	51.8	94.6	1.1	0	0	1	major CHO metabolism.degradation.sucrose.Susy	SUS1 (SUCROSE SYNTHASE 1); UDP-glycosyltransferase/ sucrose synthase Encodes a protein with sucrose synthase activity (SUS1). Identical to Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase) (SUS1) [Arabidopsis Thaliana] (GB:P49040); similar
MSGI1_74836	F7SND4004JRZ0R	112.5	59.7	44.9	112.1	0	1.3	1.3	0	PS.calvin cyle.GAP	"GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase Encodes chloroplast localized glyceraldehyde-3-phosphate dehydrogenase. Identical to Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor (EC"
MSGI1_69830	F7SND4004JS4JQ	2.7	6.9	34.6	8.8	0	-2	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_35759	F7SND4004JS9AL	39.7	43.7	12.4	82.9	0	2.7	1.7	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_46718	F7SND4004JSCWL	375.6	161	127	244.9	-1.2	0.9	1.6	0	cell wall.precursor synthesis.AXS	AXS1 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 1) Encodes UDP-d-apiose/UDP-d-xylose synthase that requires NAD+ for enzymatic activity and is strongly inhibited by UDP-d-galacturonate. similar to AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2) [Arabidopsis thalian
MSGI1_44331	F7SND4004JSS5X	80.7	48.1	33.3	37.7	0	0	1.3	0	cell.organisation	"TUB6 (BETA-6 TUBULIN) Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment. Identical to Tubulin beta-6 chain (Beta-6 tubulin) (TUBB6) [Arabidopsis Thaliana] (GB:P29514); similar to TUB3 (Tubulin beta-3), st"
MSGI1_37633	F7SND4004JT330	13.2	56	24.3	63.4	2.1	1.4	0	0	protein.postranslational modification	"CIPK12 (CIPK12); kinase Encodes CBL-interacting protein kinase 12 (CIPK12). similar to CIPK19 (CIPK19), kinase [Arabidopsis thaliana] (TAIR:AT5G45810.1); similar to CIPK13 (CIPK13), kinase [Arabidopsis thaliana] (TAIR:AT2G34180.1); similar to CIPK18 (CIP"
MSGI1_47526	F7SND4004JT3ME	84.1	41.5	68.7	86.4	-1	0	0	-1.1	PS.calvin cyle.seduheptulose bisphosphatase	"SBPASE (sedoheptulose-bisphosphatase); phosphoric ester hydrolase Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate u"
MSGI1_47999	F7SND4004JTQ0J	8.1	4.9	32.5	3.6	0	-3.2	-2	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL12 (beta-galactosidase 12); beta-galactosidase putative beta-galactosidase similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis"
MSGI1_47999	F7SND4004JTQ0J	8.1	4.9	32.5	3.6	0	-3.2	-2	0	"misc.gluco-, galacto- and mannosidases"	"BGAL12 (beta-galactosidase 12); beta-galactosidase putative beta-galactosidase similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis"
MSGI1_47752	F7SND4004JU2W8	25.6	11.2	7	12	0	0	1.9	0	cell wall.cell wall proteins.AGPs	FLA10 (fasciclin-like arabinogalactan-protein 10)  Identical to Fasciclin-like arabinogalactan protein 10 precursor (FLA10) [Arabidopsis Thaliana] (GB:Q9LZX4;GB:Q94JM1); similar to FLA8 (Arabinogalactan protein 8) [Arabidopsis thaliana] (TAIR:AT2G45470.1)
MSGI1_33849	F7SND4004JU9IC	67.7	280.1	69.7	233.2	2	1.7	0	0	metal handling	"auxin/aluminum-responsive protein, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43830.1); similar to aluminum-induced [Brassica napus] (GB:BAA25999.1); contains domain ASPARAGINE SYNTHETASE (PTHR11772); contains domain no descrip"
MSGI1_91161	F7SND4004JUV2K	23.1	34.7	559.6	204.1	0	-1.5	-4.6	-2.6	not assigned.unknown	not assigned.unknown
MSGI1_53225	F7SND4004JUV2V	14.8	45.6	51	25.2	1.6	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_64206	F7SND4004JV0JV	55	94.8	69.7	322.6	0	2.2	0	-1.8	major CHO metabolism.degradation.starch.starch cleavage	"ATBETA-AMY (BETA-AMYLASE); beta-amylase cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. Identical to Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (BMY"
MSGI1_37829	F7SND4004JVWHX	0.5	0.3	32.4	9.8	0	-1.7	-6	0	fermentation.aldehyde dehydrogenase	ALDH7B4 (ALDEHYDE DEHYDROGENASE 7B4); 3-chloroallyl aldehyde dehydrogenase Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 7B4 (EC 1.2.1.3) (Antiquitin-1) (Turgor- responsive ALDH) (ALDH7B4) [Arabidopsis Thaliana] (GB:Q9SYG7;GB:Q546B7); simila
MSGI1_53224	F7SND4004JW2TR	0.2	0	29.9	31	0	0	-7.2	-6	not assigned.unknown	not assigned.unknown
MSGI1_45854	F7SND4004JW6BC	0	0	12.9	19.2	0	0	-4.7	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_116938	F7SND4004JWKOE	126.4	57.4	14	25.5	-1.1	0	3.2	1.2	not assigned.unknown	not assigned.unknown
MSGI1_61352	F7SND4004JXBWT	11.9	18.1	2.4	0.8	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_50705	F7SND4004JXF0B	6.1	32.8	6.7	34.9	2.4	2.4	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.F5H	FAH1 (FERULATE-5-HYDROXYLASE 1); ferulate 5-hydroxylase encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis. Identical to Cytochrome P450 84A1 (EC 1.14.-.-) (Ferulate-5-hydroxylase) (F5H) (CYP84A1) [Arabidopsis Thaliana] (GB:Q42600); si
MSGI1_80168	F7SND4004JXO0G	0.2	0.4	26.4	7.9	0	0	-7	0	not assigned.unknown	not assigned.unknown
MSGI1_93331	F7SND4004JXSU8	0.6	2.6	230.3	218.9	0	0	-8.6	-6.4	not assigned.unknown	not assigned.unknown
MSGI1_87038	F7SND4004JYYCR	0	0	35.1	42.8	0	0	-6.1	-6.4	not assigned.unknown	not assigned.unknown
MSGI1_28424	F7SND4004JZI3T	19.4	54	28.8	36.9	1.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_43736	NODE_10000_length_275_cov_33.563637	41	35.4	78.8	28.9	0	-1.4	0	0	protein.degradation.ubiquitin.E2	UBC6 (UBIQUITIN-CONJUGATING ENZYME 6); ubiquitin-protein ligase Ubiquitin conjugating enzyme E2 Identical to Ubiquitin-conjugating enzyme E2-21 kDa 3 (EC 6.3.2.19) (Ubiquitin- protein ligase 6) (Ubiquitin carrier protein 6) (UBC6) [Arabidopsis Thaliana]
MSGI1_122633	NODE_10019_length_61_cov_118.557381	29.8	46	29.9	67.1	0	1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_13208	NODE_10026_length_652_cov_146.259201	97.8	51.5	0	0	0	0	7.6	6.7	not assigned.unknown	not assigned.unknown
MSGI1_73926	NODE_10035_length_174_cov_20.362068	22.6	1.5	2.9	0	-3.9	0	3	0	not assigned.unknown	not assigned.unknown
MSGI1_60379	NODE_10036_length_208_cov_71.740387	1.4	0.7	76.3	39.1	0	0	-5.8	-5.8	not assigned.unknown	not assigned.unknown
MSGI1_18312	NODE_10042_length_533_cov_31.568480	22.7	49.4	8.1	32.6	0	2	0	0	protein.degradation.ubiquitin.E3.RING	zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G60710.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2
MSGI1_14150	NODE_10048_length_626_cov_17.493610	4	4.7	22.8	4.9	0	-2.2	-2.5	0	development.unspecified	SEN1 (DARK INDUCIBLE 1) Senescence-associated gene that is strongly induced by phosphate starvation.  Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway medi
MSGI1_14150	NODE_10048_length_626_cov_17.493610	4	4.7	22.8	4.9	0	-2.2	-2.5	0	RNA.regulation of transcription.unclassified	SEN1 (DARK INDUCIBLE 1) Senescence-associated gene that is strongly induced by phosphate starvation.  Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway medi
MSGI1_46318	NODE_10056_length_263_cov_21.266159	25	23.5	0	0	0	0	5.6	5.6	protein.degradation	ATAPP1 (aminopeptidase P1) Arabidopsis aminopeptidase P1 similar to aminopeptidase [Arabidopsis thaliana] (TAIR:AT3G05350.1); similar to Xaa-Pro aminopeptidase 2 [Solanum lycopersicum] (GB:CAC59824.1); similar to metallopeptidase family M24 containing pr
MSGI1_111153	NODE_10057_length_121_cov_105.347107	96.4	100	57.3	193.8	0	1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_87037	NODE_10060_length_151_cov_103.543045	51.2	26	20.6	45.9	0	1.2	1.3	0	PS.calvin cyle.rubisco interacting	"CPN60A (chloroplast / 60 kDa chaperonin alpha subunit); ATP binding / protein binding / unfolded protein binding Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding.  Mutants display aberrant chloroplast and embryo development."
MSGI1_122627	NODE_10073_length_61_cov_126.147537	71.4	19.2	0	0	-1.9	0	7.2	5.3	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_65279	NODE_10078_length_194_cov_15.695876	0.3	0.7	13.3	19.8	0	0	-5.5	-4.8	cell.organisation	ankyrin repeat family protein  similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT5G07270.1); similar to ring zinc finger protein [Artemisia desertorum] (GB:AAY17949.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contain
MSGI1_122626	NODE_1008_length_61_cov_62.311474	13.1	7.7	0	0	0	0	4.7	0	protein.synthesis.misc ribososomal protein	"EMB3010 (EMBRYO DEFECTIVE 3010); structural constituent of ribosome  Identical to 40S ribosomal protein S6-2 (RPS6B) [Arabidopsis Thaliana] (GB:P51430;GB:O04670;GB:Q9LX91); similar to RPS6 (RIBOSOMAL PROTEIN S6), structural constituent of ribosome [Arabi"
MSGI1_51945	NODE_10080_length_238_cov_71.445381	50	33.2	14.8	28.2	0	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_57591	NODE_10083_length_217_cov_357.456207	78.3	200.6	93.8	102	1.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_122625	NODE_10086_length_61_cov_57.032787	36	29.8	0.8	0.4	0	0	5.5	6.2	not assigned.unknown	not assigned.unknown
MSGI1_38759	NODE_10087_length_302_cov_14.317881	0	0.1	35.6	4.5	0	-3	-6.2	0	not assigned.unknown	not assigned.unknown
MSGI1_64576	NODE_10088_length_196_cov_29.974489	30.4	11.5	5.7	16.4	0	0	2.4	0	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit At1g60390 precursor (Aromatic-rich glycoprotein At1g60390) [Arabidopsis Thaliana] (GB:O80760); similar to JP630, polygalacturonase"
MSGI1_74834	NODE_10090_length_172_cov_5.668605	0	0	8.8	12.5	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_4262	NODE_10097_length_1139_cov_50.195786	38.8	32.4	14.8	37.9	0	1.4	1.4	0	glycolysis.PK	"pyruvate kinase, putative  similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT5G63680.1); similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT4G26390.1); similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:A"
MSGI1_122624	NODE_10107_length_61_cov_19.983606	12.1	8.8	0	0	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_104106	NODE_10108_length_129_cov_11.550387	3	5.8	24.5	4.2	0	-2.5	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_98069	NODE_10112_length_136_cov_19.941177	28	7.2	0.2	0	-2	0	7.1	0	not assigned.unknown	not assigned.unknown
MSGI1_55640	NODE_1012_length_224_cov_101.468750	72.2	29.2	30	51	-1.3	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_22123	NODE_10123_length_468_cov_18.388889	9.5	13.9	42.3	25.6	0	0	-2.2	0	lipid metabolism.FA synthesis and FA elongation.long chain fatty acid CoA ligase	"long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)  similar to LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9), long-chain-fatty-acid-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G77590.1); similar to Os05g031"
MSGI1_50017	NODE_10124_length_246_cov_7.426829	9.6	12.7	0	0.5	0	0	0	4.7	secondary metabolism.phenylpropanoids	"4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0"
MSGI1_25789	NODE_10125_length_417_cov_82.647484	82.5	4.8	9.1	6.1	-4.1	0	3.2	0	lipid metabolism.FA synthesis and FA elongation.acyl coa ligase	acyl-activating enzyme 11 (AAE11)  similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT1G68270.1); similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT1G65880.1); similar t
MSGI1_38898	NODE_10127_length_301_cov_118.973419	69.4	67.7	32	28.7	0	0	1.1	1.2	not assigned.unknown	not assigned.unknown
MSGI1_40342	NODE_10128_length_293_cov_9.017065	11.8	0.6	31	2.3	-4.3	-3.8	0	0	cell wall.degradation.pectate lyases and polygalacturonases	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT1G02460.1); similar to unknown protein [O
MSGI1_94902	NODE_10130_length_140_cov_33.221428	33.7	83.9	10.6	22.2	1.3	0	1.7	1.9	not assigned.unknown	not assigned.unknown
MSGI1_8741	NODE_10136_length_819_cov_51.169720	37.8	40.6	1.3	2.2	0	0	4.9	4.2	not assigned.unknown	not assigned.unknown
MSGI1_3022	NODE_10138_length_1329_cov_25.188864	10.6	27.3	41.1	19.8	0	0	-2	0	protein.postranslational modification	"protein kinase, putative  similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G40540.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06440.1); contai"
MSGI1_3022	NODE_10138_length_1329_cov_25.188864	10.6	27.3	41.1	19.8	0	0	-2	0	cell wall	"protein kinase, putative  similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G40540.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06440.1); contai"
MSGI1_11064	NODE_10140_length_721_cov_27.873787	18.3	26.7	2.5	1.7	0	0	2.9	4	DNA.synthesis/chromatin structure	SYD (SPLAYED) Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral  homeotic gene expr
MSGI1_113063	NODE_10141_length_105_cov_26.504763	30.6	1.3	2.1	0	-4.6	0	3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_8139	NODE_10149_length_850_cov_56.811764	33.6	24.1	11.9	9.8	0	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_45409	NODE_1015_length_267_cov_164.254684	148.4	78	24.1	54.9	0	1.2	2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_90427	NODE_10156_length_146_cov_47.041096	26.8	124.1	20.9	86.5	2.2	2	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.F5H	FAH1 (FERULATE-5-HYDROXYLASE 1); ferulate 5-hydroxylase encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis. Identical to Cytochrome P450 84A1 (EC 1.14.-.-) (Ferulate-5-hydroxylase) (F5H) (CYP84A1) [Arabidopsis Thaliana] (GB:Q42600); si
MSGI1_89039	NODE_10158_length_148_cov_82.986488	43.3	27.7	9.3	18.7	0	0	2.2	0	cell.organisation	TUB3 (Tubulin beta-3); structural molecule encodes tubulin beta-2/beta-3 chain Identical to Tubulin beta-2/beta-3 chain (TUBB3) [Arabidopsis Thaliana] (GB:P29512); similar to TUB7 (tubulin beta-7 chain) [Arabidopsis thaliana] (TAIR:AT2G29550.1); similar
MSGI1_101451	NODE_1016_length_132_cov_16.325758	8.6	13	0.5	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_20302	NODE_10168_length_498_cov_76.255020	20.9	6.3	2.9	4.3	0	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_107941	NODE_1017_length_125_cov_15.032000	0.6	3.2	13.8	7.3	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_47522	NODE_10172_length_257_cov_50.319065	56.6	39.1	11.7	7.9	0	0	2.3	2.3	cell. vesicle transport	"coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative  similar to coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative [Arabidopsis thaliana] (TAIR:AT4G31480.1); similar to Adaptin N terminal re"
MSGI1_22955	NODE_10174_length_457_cov_23.142233	19.5	19.4	0.2	0	0	0	6.6	5.3	not assigned.unknown	not assigned.unknown
MSGI1_64575	NODE_10179_length_196_cov_45.301022	12.1	41.8	41	83.4	1.8	1	-1.8	-1	RNA.regulation of transcription.unclassified	"MIF2 (MINI ZINC FINGER 2); DNA binding  similar to MIF1 (MINI ZINC FINGER 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G74660.1); similar to Os11g0128300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065634.1); similar to Z"
MSGI1_23793	NODE_10183_length_444_cov_77.445946	57.7	111.5	163.8	72	0	-1.2	-1.5	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT3G53980.2); similar to hypothetical protein [Plantago major]
MSGI1_118011	NODE_10185_length_63_cov_58.952381	23.7	14	0	0	0	0	5.6	4.8	not assigned.unknown	not assigned.unknown
MSGI1_74380	NODE_10222_length_173_cov_29.479769	42.7	62.1	10.8	19.3	0	0	2	1.7	not assigned.unknown	not assigned.unknown
MSGI1_37631	NODE_10227_length_309_cov_35.993526	13.5	25.9	8.2	5.5	0	0	0	2.2	RNA.regulation of transcription.unclassified	"ATEXO70B1 (exocyst subunit EXO70 family protein B1); protein binding A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on"
MSGI1_11518	NODE_10227_length_706_cov_108.983002	61.6	54	35.3	69.8	0	1	0	0	RNA.RNA binding	"ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circa"
MSGI1_100535	NODE_10228_length_133_cov_252.383453	124.5	83.7	0	0	0	0	8	7.4	not assigned.unknown	not assigned.unknown
MSGI1_49322	NODE_10229_length_249_cov_47.040161	33.6	80.6	64.9	72.1	1.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_104105	NODE_10237_length_129_cov_11.023255	2.3	1.5	13	1.1	0	-3.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_115770	NODE_10245_length_81_cov_34.567902	30.8	21.2	8.6	16.6	0	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_56183	NODE_10249_length_222_cov_24.351351	6.9	38	13	6.2	2.5	0	0	2.6	stress.abiotic.touch/wounding	"wound-responsive family protein  similar to wound-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G10265.1); similar to putative wound-induced protein [Medicago sativa subsp. x varia] (GB:CAB65284.1); similar to wound induced protein [Solanu"
MSGI1_122617	NODE_10249_length_61_cov_56.934425	28.3	11	8	11.5	0	0	1.8	0	protein.postranslational modification	protein kinase-related  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G41260.1); similar to Protein kinase [Medicago truncatula] (GB:ABE92129.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); co
MSGI1_17336	NODE_1025_length_551_cov_51.892921	58.3	51.1	17.4	22.8	0	0	1.7	0	RNA.regulation of transcription.unclassified	zinc finger (CCCH-type) family protein  similar to putative uncharacterized hypothalamus protein HT010 [Oryza sativa (japonica cultivar-group)] (GB:BAD73384.1); similar to Os01g0834700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044722.1); contain
MSGI1_122616	NODE_10250_length_61_cov_13.311476	5.6	17.3	16.8	2.5	0	-2.7	0	2.8	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY41 (WRKY DNA-binding protein 41); transcription factor member of WRKY Transcription Factor; Group III Identical to Probable WRKY transcription factor 41 (WRKY DNA-binding protein 41) (WRKY41) [Arabidopsis Thaliana] (GB:Q8H0Y8;GB:O82511); similar to W
MSGI1_68517	NODE_10262_length_186_cov_332.134399	409.2	378	149.8	261	0	0	1.4	0	protein.synthesis.misc ribososomal protein	"RPS18C (S18 RIBOSOMAL PROTEIN); structural constituent of ribosome encodes a ribosomal protein S18C, a constituent of the small subunit of the ribosomal complex Identical to 40S ribosomal protein S18 (RPS18C) [Arabidopsis Thaliana] (GB:P34788;GB:Q94K22);"
MSGI1_117098	NODE_10262_length_70_cov_103.014282	34.2	27.5	52	64.9	0	0	0	-1.2	PS.aminotransferases peroxisomal	GGT1 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1) Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic sal
MSGI1_117098	NODE_10262_length_70_cov_103.014282	34.2	27.5	52	64.9	0	0	0	-1.2	amino acid metabolism.synthesis.central amino acid metabolism.alanine.alanine aminotransferase	GGT1 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1) Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic sal
MSGI1_49754	NODE_10263_length_247_cov_38.020245	23.8	26.4	1.3	0.6	0	0	4.2	5.5	not assigned.unknown	not assigned.unknown
MSGI1_113167	NODE_10265_length_104_cov_93.913460	66.7	55.8	0.3	0	0	0	7.8	6.8	protein.synthesis.misc ribososomal protein	40S ribosomal protein S7 (RPS7A)  Identical to 40S ribosomal protein S7-1 (RPS7A) [Arabidopsis Thaliana] (GB:Q9C514); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.2); similar to 40S ribosomal protein S7-like protein [
MSGI1_66038	NODE_1027_length_192_cov_29.677084	31.8	18.9	6.7	12.3	0	0	2.2	0	protein.synthesis.initiation	EIF3E (eukaryotic translation initiation factor 3E) Encodes a protein that is found in not only the eif3 complex but also in association with subunits of the COP9 signalosome. similar to Os07g0222300 [Oryza sativa (japonica cultivar-group)] (GB:NP_0010592
MSGI1_20848	NODE_10277_length_487_cov_97.897331	71.7	79.7	18	42.5	0	1.2	2	0	RNA.processing.RNA helicase	PRH75 (plant RNA helicase 75); ATP-dependent helicase DEAD/DEAH box RNA helicase PRH75 Identical to DEAD-box ATP-dependent RNA helicase 7 (EC 3.6.1.-) (RH7) [Arabidopsis Thaliana] (GB:Q39189;GB:Q94BX7;GB:Q9LVB7); similar to EMB1138 (EMBRYO DEFECTIVE 1138
MSGI1_47110	NODE_1028_length_259_cov_56.038609	57.9	28.7	97.4	26.4	0	-1.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_89037	NODE_10285_length_148_cov_44.216217	33.4	28	11.6	11.3	0	0	1.5	0	cell wall	"LAC12 (laccase 12); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to LAC3 (laccase 3), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G30210.1); simila"
MSGI1_89037	NODE_10285_length_148_cov_44.216217	33.4	28	11.6	11.3	0	0	1.5	0	secondary metabolism.simple phenols	"LAC12 (laccase 12); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to LAC3 (laccase 3), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G30210.1); simila"
MSGI1_100533	NODE_10287_length_133_cov_13.451128	123.7	0.5	30.3	1	-8	-4.9	2	0	not assigned.unknown	not assigned.unknown
MSGI1_94900	NODE_10287_length_140_cov_22.585714	20.6	24.1	40.4	7.7	0	-2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_52446	NODE_10292_length_236_cov_200.114410	97.2	155.5	44	100.6	0	1.2	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_71142	NODE_10298_length_180_cov_23.733334	0	0	41.8	8.8	0	-2.2	-6.4	0	not assigned.unknown	not assigned.unknown
MSGI1_102274	NODE_10303_length_131_cov_14.198473	13.4	9.3	23.5	39.9	0	0	0	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_25555	NODE_10308_length_420_cov_7.354762	11.1	19.4	0	0	0	0	4.5	5.3	not assigned.unknown	not assigned.unknown
MSGI1_49321	NODE_10316_length_249_cov_5.160643	0.4	3.9	14.4	7.6	0	0	-5.2	0	misc.cytochrome P450	"CYP81D3 (cytochrome P450, family 81, subfamily D, polypeptide 3); oxygen binding member of CYP81D similar to CYP81D2 (cytochrome P450, family 81, subfamily D, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37360.1); similar to CYP81D8 (c"
MSGI1_60377	NODE_10321_length_208_cov_12.927885	14.8	6.6	149.5	36.7	0	-2	-3.3	-2.5	not assigned.unknown	not assigned.unknown
MSGI1_26934	NODE_10325_length_403_cov_17.471464	22.4	1.3	2.2	0.2	-4.1	0	3.3	0	secondary metabolism.phenylpropanoids	transferase family protein  similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT3G50300.1); similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase [Malus x domestica] (GB:AAV50009.1); contains InterPro domain Transferase; (InterPro
MSGI1_100532	NODE_10328_length_133_cov_52.902256	46.5	30.6	0	0	0	0	6.5	5.9	secondary metabolism.isoprenoids.non-mevalonate pathway	geranylgeranyl reductase Encodes for a multifunctional protein with geranylgeranyl reductase activity shown to catalyze the reduction of prenylated geranylgeranyl-chlorophyll a to phytyl-chlorophyll a (chlorophyll a) and free geranylgeranyl pyrophosphate
MSGI1_23526	NODE_10329_length_449_cov_56.405346	62	109.9	114.3	42.5	0	-1.4	0	1.4	N-metabolism.ammonia metabolism.glutamate synthase.NADH dependent	GLT1 (NADH-dependent glutamate synthase 1 gene) NADH-dependent glutamate synthase similar to GLU1 (FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1) [Arabidopsis thaliana] (TAIR:AT5G04140.1); similar to GLU2 (Glutamate synthase) [Arabidopsis thaliana] (TAIR:AT2
MSGI1_15417	NODE_1033_length_593_cov_409.617188	214.6	149.8	37.4	42.6	0	0	2.5	1.8	cell wall	TUA6 (tubulin alpha-6 chiain) Encodes an alpha-tubulin isoform required for right handed helical growth. Identical to Tubulin alpha-6 chain (TUBA6) [Arabidopsis Thaliana] (GB:P29511); Identical to Tubulin alpha-2/alpha-4 chain (TUBA4) [Arabidopsis Thalia
MSGI1_15417	NODE_1033_length_593_cov_409.617188	214.6	149.8	37.4	42.6	0	0	2.5	1.8	cell.organisation	TUA6 (tubulin alpha-6 chiain) Encodes an alpha-tubulin isoform required for right handed helical growth. Identical to Tubulin alpha-6 chain (TUBA6) [Arabidopsis Thaliana] (GB:P29511); Identical to Tubulin alpha-2/alpha-4 chain (TUBA4) [Arabidopsis Thalia
MSGI1_83761	NODE_10337_length_156_cov_4.673077	0.5	0.9	11.7	2.3	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_46917	NODE_10339_length_260_cov_3.530769	0.7	0.1	33.5	5.3	0	-2.7	-5.6	0	not assigned.unknown	not assigned.unknown
MSGI1_122612	NODE_1034_length_61_cov_190.229507	20.9	86.7	16	64.2	2.1	2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_21293	NODE_10340_length_480_cov_46.668751	1.9	29.9	6.4	23.1	4	0	0	0	metal handling.acquisition	"ATFRO8/FRO8 (FERRIC REDUCTION OXIDASE 8); ferric-chelate reductase/ oxidoreductase Encodes a ferric chelate reductase that is expressed in shoots and flowers. similar to FRO1 (FERRIC REDUCTION OXIDASE 1), ferric-chelate reductase [Arabidopsis thaliana] ("
MSGI1_60052	NODE_10349_length_209_cov_79.918663	55	134.9	120.1	151.8	1.3	0	-1.1	0	RNA.regulation of transcription.bZIP transcription factor family	GBF5 (G-box binding factor 5); DNA binding / transcription factor Encodes a b-ZIP transcription factor. similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G75390.1); similar to cAMP response element binding (CREB) protein
MSGI1_37630	NODE_10355_length_309_cov_92.802589	62	20.3	20	18.2	-1.6	0	1.6	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_122610	NODE_1036_length_61_cov_43.754097	53.3	21.2	15.2	22.2	-1.3	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_122608	NODE_10367_length_61_cov_56.852459	33.4	25.7	0.4	0	0	0	6.4	5.7	not assigned.unknown	not assigned.unknown
MSGI1_73457	NODE_10376_length_175_cov_19.171429	11	8.2	27.8	44.3	0	0	0	-2.4	stress.abiotic.heat	"heat shock protein 70, putative / HSP70, putative  similar to HSP91 (Heat shock protein 91) [Arabidopsis thaliana] (TAIR:AT1G79930.2); similar to ATP binding [Arabidopsis thaliana] (TAIR:AT1G11660.2); similar to 97 kDa heat shock protein (Heat shock prot"
MSGI1_111490	NODE_10377_length_118_cov_27.305084	13.6	22	0	0	0	0	4.8	5.5	not assigned.unknown	not assigned.unknown
MSGI1_18064	NODE_10378_length_537_cov_8.165735	4.5	11.9	28.4	14	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_71141	NODE_10383_length_180_cov_54.133335	6.1	21.7	66.4	60.9	0	0	-3.4	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_77931	NODE_10385_length_166_cov_11.397591	21.6	10.3	4.9	13.5	0	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_122606	NODE_10385_length_61_cov_45.409836	24.6	25.4	0.4	0	0	0	5.9	5.7	not assigned.unknown	not assigned.unknown
MSGI1_7540	NODE_1039_length_881_cov_25.676504	14.9	53	59.4	49.3	1.8	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_33587	NODE_10409_length_338_cov_58.713017	103.2	25.7	52.6	61.4	-2	0	1	-1.3	nucleotide metabolism.phosphotransfer and pyrophosphatases.nucleoside diphosphate kinase	"nucleoside diphosphate kinase 4 (NDK4)  Identical to Nucleoside diphosphate kinase IV, chloroplast/mitochondrial precursor (EC 2.7.4.6) (NDK IV) (NDP kinase IV) (NDPK IV) (Nucleoside diphosphate kinase 4) (NDK4) [Arabidopsis Thaliana] (GB:Q8LAH8;GB:Q9T0A"
MSGI1_104104	NODE_10418_length_129_cov_91.658913	32.4	44.8	18.4	66.7	0	1.9	0	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase, putative  similar to lipoxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G67560.1); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to LOX2 (LIPOXYGENASE 2) [Arabi"
MSGI1_32566	NODE_10418_length_346_cov_16.939306	6.8	12.3	0.2	0	0	0	0	4.6	signalling.receptor kinases.leucine rich repeat I	"leucine-rich repeat protein kinase, putative  similar to light repressible receptor protein kinase [Arabidopsis thaliana] (TAIR:AT4G29990.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G29180.1); similar to le"
MSGI1_46526	NODE_10421_length_262_cov_9.190840	0.5	11.2	0.3	1.2	4.5	0	0	0	signalling.calcium	"CPK21 (calcium-dependent protein kinase 21); calcium- and calmodulin-dependent protein kinase/ kinase member of Calcium Dependent Protein Kinase similar to CPK23 (calcium-dependent protein kinase 23), calcium- and calmodulin-dependent protein kinase/ kin"
MSGI1_46526	NODE_10421_length_262_cov_9.190840	0.5	11.2	0.3	1.2	4.5	0	0	0	protein.postranslational modification	"CPK21 (calcium-dependent protein kinase 21); calcium- and calmodulin-dependent protein kinase/ kinase member of Calcium Dependent Protein Kinase similar to CPK23 (calcium-dependent protein kinase 23), calcium- and calmodulin-dependent protein kinase/ kin"
MSGI1_115322	NODE_10424_length_85_cov_62.070587	40.3	31.3	0	0	0	0	6.3	6	not assigned.unknown	not assigned.unknown
MSGI1_37347	NODE_10432_length_311_cov_46.543407	66.4	49.2	56.1	103.6	0	0	0	-1.1	misc.short chain dehydrogenase/reductase (SDR)	short-chain dehydrogenase/reductase (SDR) family protein  similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT2G47130.1); similar to 3-beta hydroxysteroid dehydrogenase [Di (GB:AAV68714.1); contains InterPro
MSGI1_113166	NODE_10439_length_104_cov_53.932693	23.4	28.8	18	44.9	0	1.3	0	0	stress.biotic	"pathogenesis-related protein, putative  similar to allergen V5/Tpx-1-related family protein [Arabidopsis thaliana] (TAIR:AT5G57625.1); similar to Allergen V5/Tpx-1 related [Medicago truncatula] (GB:ABE83411.1); contains InterPro domain Ves allergen; (Int"
MSGI1_91873	NODE_10440_length_144_cov_33.673611	31.4	53	50	131.4	0	1.4	0	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_46715	NODE_10441_length_261_cov_9.927203	0	0	24.8	1.9	0	-3.7	-5.6	0	not assigned.unknown	not assigned.unknown
MSGI1_28808	NODE_10462_length_382_cov_17.227749	16.7	21.4	72.7	9.8	0	-2.9	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_115998	NODE_10469_length_79_cov_33.873417	26.5	26.8	45.6	15.8	0	-1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_112192	NODE_10492_length_112_cov_19.785715	2.2	14.7	0.3	0.6	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_105000	NODE_10496_length_128_cov_33.898438	27.5	3.2	12.1	0.8	-3.1	-3.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_7900	NODE_10496_length_861_cov_17.030197	0.5	2	46.2	4	0	-3.5	-6.5	0	cell wall.modification	"XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6); hydrolase, acting on glycosyl bonds xyloglucan endotransglycosylase-related protein (XTR6) Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor (EC 2.4.1.207) (At-XTH23) (XTH-23) ("
MSGI1_7900	NODE_10496_length_861_cov_17.030197	0.5	2	46.2	4	0	-3.5	-6.5	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6); hydrolase, acting on glycosyl bonds xyloglucan endotransglycosylase-related protein (XTR6) Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor (EC 2.4.1.207) (At-XTH23) (XTH-23) ("
MSGI1_112800	NODE_10504_length_107_cov_85.943924	9.6	44.5	27.3	25.5	2.2	0	0	0	cell wall.cell wall proteins.LRR	leucine-rich repeat family protein  similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT2G15880.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT
MSGI1_39330	NODE_10504_length_299_cov_15.598662	10.1	14.5	20.6	4.3	0	-2.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_56455	NODE_10523_length_221_cov_31.579185	1.9	4.6	58.5	0.4	0	-7.2	-4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_43153	NODE_10524_length_278_cov_58.967625	8.9	6.9	23	31.5	0	0	0	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_19628	NODE_10527_length_512_cov_117.419922	108.1	58.7	45.1	69.5	0	0	1.3	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L22-2 (RPL22B)  Identical to 60S ribosomal protein L22-2 (RPL22B) [Arabidopsis Thaliana] (GB:Q9M9W1); similar to 60S ribosomal protein L22 (RPL22C) [Arabidopsis thaliana] (TAIR:AT5G27770.1); similar to Ribosomal L22e protein [Medicag
MSGI1_3679	NODE_1053_length_1217_cov_83.708298	58.8	136.5	191.3	120.9	1.2	0	-1.7	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	"BLH1 (BLH1); DNA binding / transcription factor BEL1-like homeodomain 1 (BLH1) similar to BLH4 (BLH4), DNA binding [Arabidopsis thaliana] (TAIR:AT2G23760.3); similar to BEL1-like homeodomain transcription factor [Trifolium pratense] (GB:BAE71188.1); cont"
MSGI1_94899	NODE_10530_length_140_cov_8.657143	0	0	18.6	0.7	0	-4.7	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_87034	NODE_10530_length_151_cov_6.867550	8.5	16.8	0	0	0	0	0	5.1	not assigned.unknown	not assigned.unknown
MSGI1_54015	NODE_10531_length_230_cov_52.247826	35.7	17.1	6.8	9.1	0	0	2.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L4/L1 (RPL4A)  Identical to 60S ribosomal protein L4-1 (L1) (RPL4A) [Arabidopsis Thaliana] (GB:Q9SF40); similar to 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] (TAIR:AT5G02870.1); similar to putative 60S ribosomal prot
MSGI1_6514	NODE_10536_length_939_cov_20.805111	14.2	15.7	0	0	0	0	4.8	5	not assigned.unknown	not assigned.unknown
MSGI1_68921	NODE_10543_length_185_cov_15.783784	11	23.2	2.4	4.3	0	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_27265	NODE_10544_length_399_cov_13.877193	0	0	2.7	12.4	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_79569	NODE_1055_length_163_cov_15.472393	15.3	6.6	0.2	0	0	0	6.3	0	not assigned.unknown	not assigned.unknown
MSGI1_39329	NODE_10555_length_299_cov_6.829432	0.1	0.5	7.8	11.4	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_24870	NODE_10560_length_429_cov_119.680656	65.8	42.4	215.1	80.9	0	-1.4	-1.7	0	protein.degradation	"SCPL48 (serine carboxypeptidase-like 48); serine carboxypeptidase  similar to SCPL47 (serine carboxypeptidase-like 47), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G22980.1); similar to SCPL49 (serine carboxypeptidase-like 49), serine carboxy"
MSGI1_115676	NODE_10565_length_82_cov_569.268311	23.7	27.9	12.3	40.5	0	1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_73925	NODE_10566_length_174_cov_16.287355	9.8	53.5	6.6	4.1	2.4	0	0	3.7	not assigned.unknown	not assigned.unknown
MSGI1_66417	NODE_10568_length_191_cov_53.554974	17.1	54.5	22.3	60.6	1.7	1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_122599	NODE_10568_length_61_cov_23.327869	24.4	137.5	18.7	13.6	2.5	0	0	3.3	not assigned.unknown	not assigned.unknown
MSGI1_88330	NODE_10575_length_149_cov_14.550336	2.4	1.9	23.8	2.2	0	-3.4	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_50955	NODE_10578_length_242_cov_22.528925	0.7	4.6	22.9	1.3	0	-4.1	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_113941	NODE_10579_length_98_cov_174.173462	64.4	31.4	29.1	27.5	-1	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_52444	NODE_10581_length_236_cov_32.733051	35.9	30.1	12.8	26.7	0	0	1.5	0	cell wall	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT1G25510.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japoni
MSGI1_52444	NODE_10581_length_236_cov_32.733051	35.9	30.1	12.8	26.7	0	0	1.5	0	RNA.regulation of transcription.unclassified	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT1G25510.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japoni
MSGI1_72050	NODE_10586_length_178_cov_6.893259	1	1.6	18.9	12.8	0	0	-4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_29625	NODE_10608_length_373_cov_17.284182	15	9.8	0	0	0	0	4.9	0	cell. vesicle transport	"coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16200.1); similar to Adaptin N terminal re (GB:ABE87941.1); similar to PREDICTED: similar to coatomer"
MSGI1_47521	NODE_10615_length_257_cov_23.949417	1.4	2.5	8.5	16.7	0	0	0	-2.7	lipid metabolism.FA synthesis and FA elongation.acyl coa ligase	AAE7/ACN1 (ACYL-ACTIVATING ENZYME 7); AMP binding / acetate-CoA ligase Encodes a peroxisomal protein with acetyl-CoA synthetase activity that is responsible for the activation of acetate for entry into the glyoxylate cycle. similar to AMP-dependent synth
MSGI1_23472	NODE_10619_length_450_cov_20.946667	0.9	1.7	20.3	34.1	0	0	-4.5	-4.3	secondary metabolism.flavonoids.dihydroflavonols	"CYP706A4 (cytochrome P450, family 706, subfamily A, polypeptide 4); oxygen binding member of CYP706A similar to CYP706A6 (cytochrome P450, family 706, subfamily A, polypeptide 6), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G12320.1); similar to CYP70"
MSGI1_60374	NODE_10621_length_208_cov_33.221153	4.1	20.2	37.2	18.8	2.3	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_85055	NODE_10634_length_154_cov_9.240260	0.3	0.5	20.8	9.1	0	0	-6.1	0	secondary metabolism.flavonoids.dihydroflavonols	"CYP82C2 (cytochrome P450, family 82, subfamily C, polypeptide 2); oxygen binding member of CYP82C similar to CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31950.1); similar to CYP82C4 (c"
MSGI1_85055	NODE_10634_length_154_cov_9.240260	0.3	0.5	20.8	9.1	0	0	-6.1	0	misc.cytochrome P450	"CYP82C2 (cytochrome P450, family 82, subfamily C, polypeptide 2); oxygen binding member of CYP82C similar to CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31950.1); similar to CYP82C4 (c"
MSGI1_111151	NODE_10639_length_121_cov_197.280991	22.6	83.9	22.9	20.4	1.9	0	0	2	hormone metabolism.ethylene.signal transduction	ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5); DNA binding / transcription factor/ transcriptional activator encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-5). The protein contains
MSGI1_111151	NODE_10639_length_121_cov_197.280991	22.6	83.9	22.9	20.4	1.9	0	0	2	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5); DNA binding / transcription factor/ transcriptional activator encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-5). The protein contains
MSGI1_113632	NODE_10646_length_101_cov_97.029701	52.8	68.9	12.6	11.2	0	0	2.1	2.6	not assigned.unknown	not assigned.unknown
MSGI1_112191	NODE_1065_length_112_cov_176.794647	86	76	28.2	62.6	0	1.2	1.6	0	cell wall.precursor synthesis.NDP sugar pyrophosphorylase.GDP mannose	"CYT1 (CYTOKINESIS DEFECTIVE 1); nucleotidyltransferase Encodes a GDP-mannose pyrophosphorylase/ mannose-1-pyrophosphatase. This enzyme provides GDP-mannose, which is used for cell wall carbohydrate biosynthesis and protein glycosylation as well as for as"
MSGI1_30309	NODE_10654_length_366_cov_24.601093	15	9	49.3	3.4	0	-3.9	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_42034	NODE_10658_length_284_cov_10.327465	8.9	24.5	14.1	2.8	0	0	0	3.1	not assigned.unknown	not assigned.unknown
MSGI1_85647	NODE_10663_length_153_cov_54.908497	39.1	18.1	52.5	15.9	0	-1.7	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_85647	NODE_10663_length_153_cov_54.908497	39.1	18.1	52.5	15.9	0	-1.7	0	0	stress.abiotic.cold	universal stress protein (USP) family protein  similar to universal stress protein (USP) family protein / early nodulin ENOD18 family protein [Arabidopsis thaliana] (TAIR:AT3G03270.2); similar to ENOD18 protein [Vicia faba] (GB:CAC18558.1); contains Inter
MSGI1_116329	NODE_10667_length_76_cov_49.763157	27.9	56.1	10.3	12.8	0	0	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_122592	NODE_10668_length_61_cov_13.868853	8.4	31.6	89.8	63.4	1.9	0	-3.4	-1	not assigned.unknown	not assigned.unknown
MSGI1_10727	NODE_10677_length_734_cov_57.268391	33.8	122.2	43.9	19.6	1.9	0	0	2.6	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G46620.1); similar to Zinc finger, RING-type; Thioredoxin-related; RINGv [Medicago truncatula] (GB:ABE8198"
MSGI1_35511	NODE_10681_length_324_cov_28.975309	0	0.2	55	50	0	0	-6.8	-8	not assigned.unknown	not assigned.unknown
MSGI1_74830	NODE_10684_length_172_cov_29.779070	24	57.9	18.2	33.2	1.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_100530	NODE_10695_length_133_cov_106.360901	93.9	26	5	8.8	-1.9	0	4.2	0	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit At1g60390 precursor (Aromatic-rich glycoprotein At1g60390) [Arabidopsis Thaliana] (GB:O80760); similar to JP630, polygalacturonase"
MSGI1_77341	NODE_10695_length_167_cov_6.095809	0.5	0.1	14.5	17	0	0	-4.9	-7.4	not assigned.unknown	not assigned.unknown
MSGI1_95676	NODE_10703_length_139_cov_10.474820	12.8	0.9	1.9	0.3	-3.8	0	0	0	secondary metabolism.unspecified	transferase family protein  similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G42830.1); similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G07870.1); similar to transferase family protein [Arabidopsis thaliana] (TAI
MSGI1_66415	NODE_10713_length_191_cov_72.089005	25.9	69.1	54.5	42.9	1.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_22647	NODE_10723_length_461_cov_14.603037	8.4	38.5	8.6	6.9	2.2	0	0	2.5	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	"lipase class 3 family protein  similar to DAD1 (DEFECTIVE ANTHER DEHISCENCE 1), triacylglycerol lipase [Arabidopsis thaliana] (TAIR:AT2G44810.1); similar to lipase-like protein [Oryza sativa] (GB:CAC39051.1); similar to Os02g0653900 [Oryza sativa (japoni"
MSGI1_39469	NODE_10725_length_298_cov_13.295302	6.2	2.6	19.7	3.6	0	-2.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_63141	NODE_10727_length_200_cov_8.170000	10.4	11.1	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_44568	NODE_1074_length_271_cov_145.081177	65.6	76.7	135.7	101.9	0	0	-1	0	PS.aminotransferases peroxisomal	AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE) Encodes a peroxisomal photorespiratory enzyme that catalyzes transamination reactions with multiple substrates. It is involved in photorespiration. Identical to Serine--glyoxylate aminotransferase (EC 2.6.1.45) (
MSGI1_44568	NODE_1074_length_271_cov_145.081177	65.6	76.7	135.7	101.9	0	0	-1	0	amino acid metabolism.synthesis.central amino acid metabolism.alanine.alanine-glyoxylate aminotransferase	AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE) Encodes a peroxisomal photorespiratory enzyme that catalyzes transamination reactions with multiple substrates. It is involved in photorespiration. Identical to Serine--glyoxylate aminotransferase (EC 2.6.1.45) (
MSGI1_112574	NODE_10741_length_109_cov_134.651382	115.8	43.1	40.7	55.4	-1.4	0	1.5	0	PS.calvin cyle.phosphoglycerate kinase	"PGK1 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase nuclear phosphoglycerate kinase (PGK1) similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2); similar to phosphoglycerate kinase, putative [Arabidopsis thaliana] (TAIR"
MSGI1_112574	NODE_10741_length_109_cov_134.651382	115.8	43.1	40.7	55.4	-1.4	0	1.5	0	glycolysis.phosphoglycerate kinases	"PGK1 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase nuclear phosphoglycerate kinase (PGK1) similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2); similar to phosphoglycerate kinase, putative [Arabidopsis thaliana] (TAIR"
MSGI1_97210	NODE_1075_length_137_cov_34.197079	7.7	32.3	10.5	23.6	2.1	0	0	0	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat family protein / protein kinase family protein  similar to HAESA (RECEPTOR-LIKE PROTEIN KINASE 5), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT4G28490.1); similar to disease resistance family p"
MSGI1_71563	NODE_10763_length_179_cov_18.318436	10.2	20	1.8	3.8	0	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_11101	NODE_10767_length_720_cov_13.329166	0.8	17.6	2.8	12	4.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_39860	NODE_10773_length_296_cov_23.226351	16.9	29.9	1.8	1.8	0	0	3.2	4.1	not assigned.unknown	not assigned.unknown
MSGI1_15415	NODE_10774_length_593_cov_18.767284	20.6	26.1	4.4	4.4	0	0	2.2	2.6	cell wall.cellulose synthesis	"ATCSLA09 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 4); transferase, transferring glycosyl groups encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium"
MSGI1_96464	NODE_10775_length_138_cov_31.057972	28.3	10.3	5.6	6.3	0	0	2.3	0	protein.degradation.subtilases	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G20430.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabid"
MSGI1_96464	NODE_10775_length_138_cov_31.057972	28.3	10.3	5.6	6.3	0	0	2.3	0	cell wall	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G20430.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabid"
MSGI1_117096	NODE_10781_length_70_cov_25.228571	5.4	7.7	36.1	5.8	0	-2.6	-2.7	0	stress.abiotic.drought/salt	senescence/dehydration-associated protein-related  similar to ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) [Arabidopsis thaliana] (TAIR:AT2G17840.1); similar to Senescence-associated [Medicago truncatula] (GB:ABE77914.1); contains InterPro domain Senescence-a
MSGI1_117096	NODE_10781_length_70_cov_25.228571	5.4	7.7	36.1	5.8	0	-2.6	-2.7	0	development.unspecified	senescence/dehydration-associated protein-related  similar to ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) [Arabidopsis thaliana] (TAIR:AT2G17840.1); similar to Senescence-associated [Medicago truncatula] (GB:ABE77914.1); contains InterPro domain Senescence-a
MSGI1_99640	NODE_10784_length_134_cov_29.425373	20.7	7.4	57	34.2	0	0	-1.5	-2.2	transport.Major Intrinsic Proteins.PIP	TMP-C (plasma membrane intrinsic protein 1;4); water channel a member of the plasma membrane intrinsic protein subfamily PIP1. Identical to Probable aquaporin PIP1.4 (Plasma membrane intrinsic protein 1.4) (Transmembrane protein C) (TMP-C) (PIP1.4) [Arab
MSGI1_88329	NODE_10785_length_149_cov_170.308731	96.2	38.7	14.3	5.3	-1.3	0	2.8	2.9	cell wall.degradation.pectate lyases and polygalacturonases	pectate lyase family protein  Identical to Probable pectate lyase 1 precursor (EC 4.2.2.2) (Pectate lyase A1) [Arabidopsis Thaliana] (GB:Q940Q1;GB:O23017;GB:O23666); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G48900.1); simil
MSGI1_49319	NODE_10789_length_249_cov_61.236946	58.4	44.8	21.4	26.6	0	0	1.4	0	cell. vesicle transport	"coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative  similar to coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative [Arabidopsis thaliana] (TAIR:AT4G31490.1); similar to Adaptin N terminal re"
MSGI1_16672	NODE_10794_length_564_cov_90.081558	79.7	2.5	231.9	4.6	-5	-5.7	-1.5	0	hormone metabolism.gibberelin.induced-regulated-responsive-activated	"gibberellin-regulated family protein  similar to gibberellin-regulated family protein [Arabidopsis thaliana] (TAIR:AT2G39540.1); similar to snakin-1 [Solanum tuberosum] (GB:CAC44032.1); contains InterPro domain Growth factor, cystine knot; (InterPro:IPR0"
MSGI1_19302	NODE_10801_length_518_cov_60.357143	68.3	36.9	32.6	31.5	0	0	1.1	0	mitochondrial electron transport / ATP synthesis.cytochrome c reductase	"ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein  similar to Ubiquinol-cytochrome C reductase, UQCRXQCR9 like [Medicago truncatula] (GB:ABE77853.1); contains InterPro domain Ubiquinol-cytochrome C reductase, UQCRXQCR9 like; (InterPro:IPR00"
MSGI1_122582	NODE_10801_length_61_cov_56.770493	37.1	16.5	52.3	51.9	0	0	0	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_110975	NODE_10810_length_122_cov_126.909836	48.1	23	131.6	33.4	0	-2	-1.5	0	hormone metabolism.jasmonate.synthesis-degradation.allene oxidase synthase	AOS (ALLENE OXIDE SYNTHASE); hydro-lyase/ oxygen binding Encodes a member of the  cytochrome p450 CYP74 gene family that functions as an allene oxide synthase. This enzyme catalyzes dehydration of the hydroperoxide to an unstable allene oxide in the JA b
MSGI1_102271	NODE_10816_length_131_cov_5.091603	0	0	9.4	12	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_114451	NODE_10819_length_93_cov_66.741936	26.3	28.1	0	0	0	0	5.7	5.8	not assigned.unknown	not assigned.unknown
MSGI1_64926	NODE_10828_length_195_cov_57.584614	78.5	48.8	15.9	52.2	0	1.7	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_11274	NODE_10831_length_714_cov_19.826330	6.1	12.9	31.7	9.6	0	-1.7	-2.4	0	transport.ABC transporters and multidrug resistance systems	ATGCN1 (Arabidopsis thaliana general control non-repressible 1) member of GCN subfamily similar to ATGCN4 (Arabidopsis thaliana general control non-repressible 4) [Arabidopsis thaliana] (TAIR:AT3G54540.1); similar to ABC transporter homolog [Populus nigr
MSGI1_33976	NODE_10832_length_335_cov_124.773132	73.5	36	31.9	42.8	-1	0	1.2	0	cell wall	"chloroplast nucleoid DNA-binding protein, putative  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G10760.1); similar to CND41, chloroplast nucleoid DNA binding protein [Nicotiana tabacum] (GB:BAA22813.1); contains InterPro d"
MSGI1_33976	NODE_10832_length_335_cov_124.773132	73.5	36	31.9	42.8	-1	0	1.2	0	RNA.regulation of transcription.unclassified	"chloroplast nucleoid DNA-binding protein, putative  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G10760.1); similar to CND41, chloroplast nucleoid DNA binding protein [Nicotiana tabacum] (GB:BAA22813.1); contains InterPro d"
MSGI1_85645	NODE_10834_length_153_cov_36.483662	35.9	20.8	12.9	15.9	0	0	1.5	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_85645	NODE_10834_length_153_cov_36.483662	35.9	20.8	12.9	15.9	0	0	1.5	0	cell wall	glycosyl hydrolase family 79 N-terminal domain-containing protein  Identical to Heparanase-like protein 3 precursor (EC 3.2.-.-) [Arabidopsis Thaliana] (GB:Q9FZP1;GB:O82604;GB:O82605); similar to glycosyl hydrolase family 79 N-terminal domain-containing
MSGI1_24966	NODE_10846_length_428_cov_51.441589	20.4	30.8	16.6	8.7	0	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_122579	NODE_1085_length_61_cov_56.508198	17.7	11.5	3.2	6.2	0	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_89035	NODE_10852_length_148_cov_36.932434	23.5	23.6	2.8	2.6	0	0	3.1	3.2	not assigned.unknown	not assigned.unknown
MSGI1_28877	NODE_10864_length_381_cov_25.527559	54.1	2.6	31.3	1.4	-4.4	-4.5	0	0	DNA.repair	methyladenine glycosylase family protein  similar to methyladenine glycosylase family protein [Arabidopsis thaliana] (TAIR:AT5G44680.1); similar to Methyladenine glycosylase [Medicago truncatula] (GB:ABE81339.1); contains InterPro domain Methyladenine gly
MSGI1_73924	NODE_10865_length_174_cov_100.068962	69.3	52	31.9	57.5	0	0	1.1	0	protein.postranslational modification	"T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative  Identical to T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) [Arabidopsis Thaliana] (GB:O04450); similar to chaperonin, putative [Arabidopsi"
MSGI1_122577	NODE_10867_length_61_cov_39.442623	41.4	38.8	10.4	28.8	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_91871	NODE_1087_length_144_cov_206.708328	105.1	53.9	98.1	107.4	0	0	0	-1	PS.calvin cyle.seduheptulose bisphosphatase	"SBPASE (sedoheptulose-bisphosphatase); phosphoric ester hydrolase Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate u"
MSGI1_111148	NODE_10872_length_121_cov_43.421486	20.1	2.3	2.9	2.8	-3.1	0	2.8	0	"misc.gluco-, galacto- and mannosidases"	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_111148	NODE_10872_length_121_cov_43.421486	20.1	2.3	2.9	2.8	-3.1	0	2.8	0	major CHO metabolism.degradation.starch.starch cleavage	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_62379	NODE_10872_length_202_cov_78.653465	14.1	71.2	59.4	6.7	2.3	-3.1	-2.1	3.4	not assigned.unknown	not assigned.unknown
MSGI1_9878	NODE_10874_length_767_cov_75.644066	11.7	49.3	7.7	44.6	2.1	2.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_48223	NODE_10877_length_254_cov_11.311024	31.9	25.4	9.2	12.4	0	0	1.8	0	signalling.receptor kinases.proline extensin like	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G55200.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G56790.1); similar to Os01g0602800 [Oryza sativa (japonica cultivar
MSGI1_46316	NODE_1088_length_263_cov_36.387833	26.7	29.6	7.6	5.4	0	0	1.8	2.5	not assigned.unknown	not assigned.unknown
MSGI1_10017	NODE_10887_length_761_cov_29.685940	27.9	7.8	8.7	6.5	-1.8	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_16883	NODE_10888_length_560_cov_9.042857	12.7	0.7	10.7	0.7	-4.2	0	0	0	lipid metabolism.lipid degradation.beta-oxidation.acyl CoA reductase	"acyl CoA reductase, putative  similar to acyl CoA reductase, putative / male-sterility protein, putative [Arabidopsis thaliana] (TAIR:AT5G22500.1); similar to acyl CoA reductase [Hevea brasiliensis] (GB:AAR88762.1); contains InterPro domain Male sterilit"
MSGI1_27510	NODE_10901_length_396_cov_80.265152	70.8	52.4	34.2	24.9	0	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_122574	NODE_10903_length_61_cov_71.081970	41.6	73.9	4	4.5	0	0	3.4	4	not assigned.unknown	not assigned.unknown
MSGI1_97209	NODE_10904_length_137_cov_20.284672	49.2	22.2	21.8	28.1	0	0	1.2	0	protein.degradation.serine protease	"SCPL40 (serine carboxypeptidase-like 40); serine carboxypeptidase  similar to SCPL39 (serine carboxypeptidase-like 39), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G52020.1); similar to putative serine carboxypeptidase [Pisum sativum] (GB:CAC"
MSGI1_15535	NODE_10904_length_590_cov_9.691525	6.4	6	26.8	10.4	0	0	-2.1	0	amino acid metabolism.degradation.aromatic aa.tryptophan	"acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative  Identical to Probable acetyl-CoA acetyltransferase, cytosolic 2 (EC 2.3.1.9) (Cytosolic acetoacetyl-CoA thiolase 2) (Thiolase 2) [Arabidopsis Thaliana] (GB:Q9FIK7;GB:Q3E710;GB:Q3"
MSGI1_15535	NODE_10904_length_590_cov_9.691525	6.4	6	26.8	10.4	0	0	-2.1	0	secondary metabolism.isoprenoids.mevalonate pathway.acetyl-CoA C-acyltransferase	"acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative  Identical to Probable acetyl-CoA acetyltransferase, cytosolic 2 (EC 2.3.1.9) (Cytosolic acetoacetyl-CoA thiolase 2) (Thiolase 2) [Arabidopsis Thaliana] (GB:Q9FIK7;GB:Q3E710;GB:Q3"
MSGI1_15535	NODE_10904_length_590_cov_9.691525	6.4	6	26.8	10.4	0	0	-2.1	0	amino acid metabolism.degradation.aspartate family.lysine	"acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative  Identical to Probable acetyl-CoA acetyltransferase, cytosolic 2 (EC 2.3.1.9) (Cytosolic acetoacetyl-CoA thiolase 2) (Thiolase 2) [Arabidopsis Thaliana] (GB:Q9FIK7;GB:Q3E710;GB:Q3"
MSGI1_78976	NODE_10906_length_164_cov_9.560976	1.1	3.9	20.3	5.8	0	0	-4.2	0	misc.UDP glucosyl and glucoronyl transferases	exostosin family protein  similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT4G32790.1); similar to Exostosin-like [Medicago truncatula] (GB:ABE81272.1); contains InterPro domain Exostosin-like; (InterPro:IPR004263)
MSGI1_101446	NODE_1091_length_132_cov_136.196976	23.9	81	44.5	38.7	1.8	0	0	1.1	not assigned.unknown	not assigned.unknown
MSGI1_52999	NODE_1091_length_234_cov_82.876068	100.4	47.1	35.4	52	-1.1	0	1.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L35a (RPL35aA)  Identical to 60S ribosomal protein L35a-1 (RPL35AA) [Arabidopsis Thaliana] (GB:Q9LMK0); similar to 60S ribosomal protein L35a (RPL35aC) [Arabidopsis thaliana] (TAIR:AT1G74270.1); similar to ribosomal protein L33 [Cast
MSGI1_77338	NODE_10916_length_167_cov_9.874251	2	3.7	21.5	7.3	0	0	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_71562	NODE_10920_length_179_cov_16.681564	10.9	34	38.7	12.8	1.6	-1.6	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_40024	NODE_10930_length_295_cov_12.311865	0.4	0.2	9.8	19.3	0	0	0	-6.6	not assigned.unknown	not assigned.unknown
MSGI1_19685	NODE_10935_length_511_cov_15.358121	5.5	10.1	27.5	8.7	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_122571	NODE_1095_length_61_cov_69.721313	37.1	34.9	9.6	28	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_6502	NODE_10965_length_940_cov_75.385109	19.8	46.4	15.7	10	1.2	0	0	2.2	stress.biotic	EDS1 (ENHANCED DISEASE SUSCEPTIBILITY 1); signal transducer/ triacylglycerol lipase Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases. similar to lipase class 3 family protein / disease resistance
MSGI1_113365	NODE_10968_length_103_cov_59.388348	16.1	22	1.2	2.5	0	0	3.7	3.1	not assigned.unknown	not assigned.unknown
MSGI1_42032	NODE_10970_length_284_cov_50.929577	48.4	28.3	0.3	0	0	0	7.3	5.8	not assigned.unknown	not assigned.unknown
MSGI1_62069	NODE_10993_length_203_cov_10.472906	0	0.1	2.6	25	0	3.3	0	-8	not assigned.unknown	not assigned.unknown
MSGI1_122569	NODE_10998_length_61_cov_200.704926	99	94	50.3	35	0	0	1	1.4	not assigned.unknown	not assigned.unknown
MSGI1_57587	NODE_11012_length_217_cov_30.055300	1.1	19.5	11	7.9	4.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_23268	NODE_11027_length_453_cov_9.236203	0.4	3.1	4.1	27.1	0	2.7	0	-3.1	cell wall.degradation.pectate lyases and polygalacturonases	"PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding polygalacturonase inhibiting protein 1 (PGIP1) mRNA, Identical to Polygalacturonase inhibitor 1 precursor (Polygalacturonase-inhibiting protein) (PGIP-1) (PGIP1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_117247	NODE_11029_length_69_cov_335.637695	28.5	74.3	24	70	1.4	1.5	0	0	cell wall.cell wall proteins.AGPs	FLA12 (fasciclin-like arabinogalactan-protein 12)  Identical to Fasciclin-like arabinogalactan protein 12 precursor (FLA12) [Arabidopsis Thaliana] (GB:Q8LEE9;GB:Q94EG7;GB:Q9FKJ8); similar to FLA11 (fasciclin-like arabinogalactan-protein 11) [Arabidopsis t
MSGI1_77928	NODE_1104_length_166_cov_336.030121	112.1	130.8	160.9	293.3	0	0	0	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_10552	NODE_1104_length_740_cov_36.906757	42	45.1	16.1	31.8	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_23961	NODE_11050_length_441_cov_33.362812	1.8	13.2	0.1	0	0	0	0	4.7	RNA.regulation of transcription.C3H zinc finger family	CZF1/ZFAR1; transcription factor  similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G55980.1); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR0021
MSGI1_110973	NODE_11077_length_122_cov_41.983608	5.8	31.3	33.4	34.2	2.4	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_105980	NODE_11083_length_127_cov_20.716536	0	0	45.5	46.7	0	0	-6.5	-6.5	not assigned.unknown	not assigned.unknown
MSGI1_13134	NODE_1109_length_654_cov_54.038227	36.6	26.2	11.4	14.3	0	0	1.7	0	hormone metabolism.brassinosteroid.synthesis-degradation.sterols.CYP51	"CYP51G1 (CYTOCHROME P450 51); oxygen binding putative obtusifoliol 14-alpha demethylase involved in sterol biosynthesis. similar to CYP707A3 (cytochrome P450, family 707, subfamily A, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G45340."
MSGI1_45651	NODE_11098_length_266_cov_56.672932	7.5	30.3	3.6	6.9	2	0	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_56721	NODE_1110_length_220_cov_11.668181	13.8	12.2	0	0.4	0	0	4.8	4.9	not assigned.unknown	not assigned.unknown
MSGI1_116108	NODE_11109_length_78_cov_85.179489	25.7	56.9	77.5	59.7	1.1	0	-1.6	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	PAL1 (PHE AMMONIA LYASE 1); phenylalanine ammonia-lyase encodes a protein similar to phenylalanine ammonia-lyase Identical to Phenylalanine ammonia-lyase 1 (EC 4.3.1.5) (PAL1) [Arabidopsis Thaliana] (GB:P35510;GB:Q94AN1;GB:Q9ZQD6); similar to PAL2 (pheny
MSGI1_57586	NODE_11116_length_217_cov_8.387096	2.9	1.3	18.2	1.3	0	-3.8	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_24623	NODE_1117_length_432_cov_185.530090	120.2	59.8	49.9	61.6	-1	0	1.3	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S10 (RPS10C)  Identical to 40S ribosomal protein S10-3 (RPS10C) [Arabidopsis Thaliana] (GB:Q9LTF2;GB:Q8VZ66); similar to 40S ribosomal protein S10 (RPS10A) [Arabidopsis thaliana] (TAIR:AT4G25740.1); similar to 40S ribosomal protein
MSGI1_33444	NODE_1119_length_339_cov_8.743362	26.4	5	2.4	2.4	-2.4	0	3.5	0	"misc.gluco-, galacto- and mannosidases"	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_33444	NODE_1119_length_339_cov_8.743362	26.4	5	2.4	2.4	-2.4	0	3.5	0	major CHO metabolism.degradation.starch.starch cleavage	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_44722	NODE_11204_length_270_cov_13.933333	0.8	1.2	18.3	1.7	0	-3.4	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_91869	NODE_11225_length_144_cov_10.722222	0	0	37.7	23.5	0	0	-6.2	-5.6	not assigned.unknown	not assigned.unknown
MSGI1_24157	NODE_11231_length_438_cov_115.561646	66.5	49.5	33.6	50.5	0	0	1	0	RNA.regulation of transcription.General Transcription	"nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative  similar to nascent polypeptide-associated complex (NAC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G73230.1); similar to tr"
MSGI1_42213	NODE_11236_length_283_cov_8.303887	18.9	1.8	10.2	0.3	-3.4	0	0	0	signalling.calcium	"calmodulin, putative  similar to CAM8 (CALMODULIN 8), calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G14640.1); similar to calmodulin NtCaM13 [Nicotiana tabacum] (GB:BAB61919.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains"
MSGI1_10551	NODE_11243_length_740_cov_61.131081	6.7	28.2	21.7	30.2	2.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_17030	NODE_11256_length_557_cov_37.831238	6	0.4	104.9	4.5	0	-4.5	-4.1	0	misc.glutathione S transferases	ATGSTF9 (Arabidopsis thaliana Glutathione S-transferase (class phi) 9); glutathione transferase Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTF10 (EARLY DEHYDRATIO
MSGI1_28423	NODE_11257_length_386_cov_13.007772	35.7	31.6	10.3	13.6	0	0	1.8	0	cell wall	"LAC12 (laccase 12); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to LAC3 (laccase 3), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G30210.1); simila"
MSGI1_28423	NODE_11257_length_386_cov_13.007772	35.7	31.6	10.3	13.6	0	0	1.8	0	secondary metabolism.simple phenols	"LAC12 (laccase 12); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to LAC3 (laccase 3), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G30210.1); simila"
MSGI1_115080	NODE_11263_length_87_cov_87.873566	19.1	29.7	1.6	17	0	3.4	3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_55638	NODE_11275_length_224_cov_12.022322	0.5	0.8	16.9	7	0	0	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_114347	NODE_11281_length_94_cov_60.446808	72.1	51.2	146.9	108.4	0	0	0	-1.1	not assigned.unknown	not assigned.unknown
MSGI1_78445	NODE_11292_length_165_cov_26.133333	5.5	26.4	12.3	24	2.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_4958	NODE_1130_length_1064_cov_49.390038	37.8	84.7	69.3	52.1	1.2	0	0	0	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to IKU2 (HAIKU2), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G19700.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TA"
MSGI1_4958	NODE_1130_length_1064_cov_49.390038	37.8	84.7	69.3	52.1	1.2	0	0	0	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to IKU2 (HAIKU2), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G19700.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TA"
MSGI1_4958	NODE_1130_length_1064_cov_49.390038	37.8	84.7	69.3	52.1	1.2	0	0	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_72049	NODE_11305_length_178_cov_10.106742	19.1	8.9	2.9	4.2	0	0	2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_115213	NODE_11333_length_86_cov_71.709305	7.4	11.5	43.1	16.4	0	-1.4	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_72550	NODE_11341_length_177_cov_9.248588	0.1	0.1	19	16.3	0	0	-7.6	-7.3	not assigned.unknown	not assigned.unknown
MSGI1_122558	NODE_11343_length_61_cov_35.639343	17.5	10.8	1.6	11.9	0	0	3.5	0	tetrapyrrole synthesis.GSA	"GSA2 (GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE 2); glutamate-1-semialdehyde 2,1-aminomutase  Identical to Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplast precursor (EC 5.4.3.8) (GSA 2) (Glutamate-1-semialdehyde aminotransferase 2) (GSA-AT 2) (GSA"
MSGI1_52173	NODE_11370_length_237_cov_10.620254	0	0	23	11.3	0	0	-5.5	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_55927	NODE_11372_length_223_cov_18.726458	18.9	21.1	0.3	0.9	0	0	6	4.6	not assigned.unknown	not assigned.unknown
MSGI1_53518	NODE_11372_length_232_cov_33.560345	19.8	46.5	41.9	70.7	1.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_42965	NODE_11380_length_279_cov_35.501793	31.5	19.2	9.8	14.1	0	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_21854	NODE_11396_length_472_cov_30.709745	1.8	5.1	22.1	2.3	0	-3.3	-3.6	0	cell wall.precursor synthesis.UGE	RHD1 (ROOT HAIR DEFECTIVE 1) Encodes a protein with UDP-D-glucose 4-epimerase activity. Mutants in RHD1 have abnormally shaped root hairs with a bulbous region at the base. Allelic to REB1 encoding a UDP-D-glucose 4-epimerase involved in cell wall biosyn
MSGI1_106940	NODE_11397_length_126_cov_4.579365	0.8	1.4	12.7	10.7	0	0	-4	0	secondary metabolism.phenylpropanoids	isochorismatase hydrolase family protein  similar to isochorismatase hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G23220.1); similar to isochorismatase hydrolase family protein [Musa acuminata] (GB:ABF70079.1); contains InterPro domain Isochor
MSGI1_80779	NODE_11401_length_161_cov_110.931679	20.8	54.2	19.9	32.1	1.4	0	0	0	transporter.sugars.sucrose	"SUC2 (SUCROSE-PROTON SYMPORTER 2); carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter Encodes for a high-affinity  transporter essential for phloem loading and long-distance transport. A major sucrose transporter, AtSUC2 can also transpor"
MSGI1_70269	NODE_11405_length_182_cov_24.763737	0.4	24.8	0.2	0.4	6	0	0	6	not assigned.unknown	not assigned.unknown
MSGI1_112295	NODE_11414_length_111_cov_49.621620	7.8	24.5	11.6	3.5	0	0	0	2.8	not assigned.unknown	not assigned.unknown
MSGI1_34677	NODE_11419_length_330_cov_14.951515	1.4	1.2	38.4	1	0	-5.3	-4.8	0	misc.UDP glucosyl and glucoronyl transferases	"UGT74D1 (UDP-glucosyl transferase 74D1); UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein"
MSGI1_111489	NODE_1143_length_118_cov_245.101700	221.8	104.4	1.1	0.6	-1.1	0	7.7	7.4	mitochondrial electron transport / ATP synthesis.F1-ATPase	"ATP synthase beta chain, mitochondrial, putative  Identical to ATP synthase subunit beta-3, mitochondrial precursor (EC 3.6.3.14) [Arabidopsis Thaliana] (GB:Q9C5A9); similar to ATP synthase beta chain 1, mitochondrial [Arabidopsis thaliana] (TAIR:AT5G086"
MSGI1_122556	NODE_11437_length_61_cov_18.262295	7.6	11	0.4	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_22582	NODE_11439_length_462_cov_97.612556	7.4	43.5	18.3	8.3	2.6	0	0	2.4	RNA.regulation of transcription.GRAS transcription factor family	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_22582	NODE_11439_length_462_cov_97.612556	7.4	43.5	18.3	8.3	2.6	0	0	2.4	development.unspecified	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_24014	NODE_1144_length_440_cov_377.490906	144.4	76.5	24.3	44.4	0	0	2.6	0	mitochondrial electron transport / ATP synthesis.F1-ATPase	"ATP synthase beta chain, mitochondrial, putative  Identical to ATP synthase subunit beta-3, mitochondrial precursor (EC 3.6.3.14) [Arabidopsis Thaliana] (GB:Q9C5A9); similar to ATP synthase beta chain 1, mitochondrial [Arabidopsis thaliana] (TAIR:AT5G086"
MSGI1_76874	NODE_11448_length_168_cov_28.732143	4.2	12.1	21	14.3	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_47995	NODE_11449_length_255_cov_18.815687	2.2	13	0	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_93327	NODE_11451_length_142_cov_24.528170	16	15.4	2.2	3.7	0	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_122554	NODE_11458_length_61_cov_35.081966	14.9	27.3	19.9	2.5	0	-3	0	3.4	not assigned.unknown	not assigned.unknown
MSGI1_38895	NODE_11475_length_301_cov_25.634552	36.1	15.4	78.5	19.6	0	-2	-1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_65275	NODE_11485_length_194_cov_19.381443	0.9	0.6	32.5	0.6	0	-5.8	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_122553	NODE_11488_length_61_cov_137.213120	57.4	35.6	21.1	43.7	0	0	1.4	0	protein.degradation.ubiquitin.proteasom	PBC2 (20S proteasome beta subunit C 2); peptidase Encodes beta subunit of 20s proteosome complex which is involved in protein degradation. Identical to Proteasome subunit beta type 3-B (EC 3.4.25.1) (20S proteasome beta subunit C-2) (PBC2) [Arabidopsis T
MSGI1_51694	NODE_11489_length_239_cov_8.615063	11.1	0.4	1.3	0.3	-4.8	0	0	0	misc.cytochrome P450	"CYP86A2 (ABERRANT INDUCTION OF TYPE THREE GENES 1); oxygen binding Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems. Identical to Cytochrome P450 86A2 (EC 1.14.-.-) (CYP86"
MSGI1_69385	NODE_11509_length_184_cov_36.190216	20.9	9.4	39.4	13.3	0	-1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_59137	NODE_11511_length_212_cov_42.990566	18.9	36.7	7.8	8.3	0	0	0	2.1	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	basic helix-loop-helix (bHLH) family protein  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT5G46760.1); similar to basic helix-loop-helix (bHLH) family transcription factor [Brassica oleracea] (GB:ABD65632.1); cont
MSGI1_42424	NODE_11519_length_282_cov_12.039007	4.7	3.3	33.5	9.1	0	-1.9	-2.8	0	protein.degradation.ubiquitin.E3.SCF.FBOX	"FKF1 (FLAVIN-BINDING KELCH DOMAIN F BOX PROTEIN); ubiquitin-protein ligase flavin-binding kelch domain F box protein, is clock-controlled, regulates transition to flowering Identical to Adagio protein 3 (Flavin-binding kelch repeat F-box protein 1) (F-bo"
MSGI1_110970	NODE_11523_length_122_cov_79.737701	21.5	73.8	51.2	20.8	1.8	-1.3	-1.3	1.8	not assigned.unknown	not assigned.unknown
MSGI1_107933	NODE_11533_length_125_cov_56.456001	151.3	47.5	80.6	63.9	-1.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_103197	NODE_11554_length_130_cov_12.330770	0.6	0.2	8.4	12.9	0	0	0	-6	not assigned.unknown	not assigned.unknown
MSGI1_69821	NODE_11563_length_183_cov_114.961746	31.5	28.4	34.8	123.5	0	1.8	0	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_7482	NODE_11594_length_884_cov_93.432129	44.8	57.5	13.6	30.7	0	0	1.7	0	transport.misc	xanthine/uracil permease family protein  Identical to Nucleobase-ascorbate transporter 5 (AtNAT5) (NAT5) [Arabidopsis Thaliana] (GB:Q8RWE9;GB:Q9FGR4); similar to permease [Arabidopsis thaliana] (TAIR:AT5G62890.3); similar to xanthine/uracil permease famil
MSGI1_52441	NODE_11595_length_236_cov_64.012711	8.6	33.5	33.2	34.1	2	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_115855	NODE_11598_length_80_cov_75.500000	1	3.3	52.9	0.7	0	-6.2	-5.7	0	not assigned.unknown	not assigned.unknown
MSGI1_69383	NODE_11608_length_184_cov_58.646740	43.7	32.2	17.8	17.2	0	0	1.3	0	cell wall.precursor synthesis.GAE	"GAE6 (UDP-D-GLUCURONATE 4-EPIMERASE 6); catalytic UDP-D-glucuronate 4-epimerase similar to GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3), catalytic [Arabidopsis thaliana] (TAIR:AT4G00110.1); similar to GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2), catalytic [Arabidop"
MSGI1_42625	NODE_1162_length_281_cov_16.619217	8.6	15	4.5	20.5	0	2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_9877	NODE_11625_length_767_cov_51.440678	11.2	34.3	37.8	35.3	1.6	0	-1.8	0	RNA.regulation of transcription.bZIP transcription factor family	"BZO2H2 (basic leucine zipper O2 homolog 2); DNA binding / transcription factor Encodes bZIP protein BZO2H2. similar to BZO2H1 (basic leucine zipper O2 homolog 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G02640.2); similar to bZ"
MSGI1_69819	NODE_11626_length_183_cov_9.284153	2.2	0.9	23	6.2	0	0	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_69818	NODE_11636_length_183_cov_12.147541	0	0	19.5	12.3	0	0	-5.3	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_91867	NODE_11638_length_144_cov_5.909722	0.2	0.3	13	3.4	0	0	-6	0	not assigned.unknown	not assigned.unknown
MSGI1_19837	NODE_11672_length_508_cov_15.937008	0.7	1.4	13.9	32.9	0	0	-4.3	-4.6	misc.UDP glucosyl and glucoronyl transferases	"UGT73B3 (UDP-glucosyl transferase 73B3); UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring hexosyl groups  similar to UGT73B2, UDP-glucosyltransferase/ UDP-glycosyltransferase/ flavonol 3-O-glucosyltransferase [Arabido"
MSGI1_15136	NODE_11675_length_600_cov_20.806667	14.5	13.7	1.8	1.3	0	0	3	3.4	not assigned.unknown	not assigned.unknown
MSGI1_81338	NODE_11676_length_160_cov_91.349998	39.6	30.7	12.8	32.7	0	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_85051	NODE_1168_length_154_cov_32.090908	50	3.6	5.4	3.7	-3.8	0	3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_117884	NODE_11681_length_64_cov_25.812500	3.3	2.6	132.4	157.2	0	0	-5.3	-5.9	amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase	"glutamate decarboxylase, putative  similar to GAD (Glutamate decarboxylase 1), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G17330.1); similar to glutamate decarboxylase, putative [Arabidopsis thaliana] (TAIR:AT2G02010.1); similar to glutamate deca"
MSGI1_117883	NODE_11681_length_64_cov_89.421875	48.2	57.7	20.6	24.5	0	0	1.2	1.2	RNA.processing.ribonucleases	"CCR4-NOT transcription complex protein, putative  similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT1G80780.2); similar to Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula] (GB:ABE87519.1); co"
MSGI1_25695	NODE_11684_length_418_cov_33.842106	23.6	41.6	0.9	0.1	0	0	4.7	8.7	not assigned.unknown	not assigned.unknown
MSGI1_98827	NODE_11700_length_135_cov_14.570371	9.7	47.5	24.3	13.8	2.3	0	0	1.8	RNA.regulation of transcription.GRAS transcription factor family	"SCL21 (SCARECROW-LIKE 21); transcription factor Encodes a scarecrow-like protein (SCL21). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS7"
MSGI1_98827	NODE_11700_length_135_cov_14.570371	9.7	47.5	24.3	13.8	2.3	0	0	1.8	development.unspecified	"SCL21 (SCARECROW-LIKE 21); transcription factor Encodes a scarecrow-like protein (SCL21). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS7"
MSGI1_63809	NODE_11702_length_198_cov_22.494949	0	0	26.4	27.1	0	0	-5.7	-5.8	protein.degradation.cysteine protease	SEC-C motif-containing protein / OTU-like cysteine protease family protein  similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT2G27350.3); similar to H0624F09.2 [Oryza sativa (indica cultivar-group)] (GB:CAH67694.1); simi
MSGI1_30428	NODE_11703_length_365_cov_86.008217	11.6	59.7	12.5	27.6	2.4	0	0	1.1	not assigned.unknown	not assigned.unknown
MSGI1_57903	NODE_11709_length_216_cov_18.449074	0	0	22.3	15.7	0	0	-5.5	-5	not assigned.unknown	not assigned.unknown
MSGI1_46315	NODE_11717_length_263_cov_16.954372	2.9	0.1	40.1	0.2	0	-7.6	-3.8	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 16 precursor (EC 1.11.1.7) (Atperox P16) (ATP22a) (PER16) [Arabidopsis Thaliana] (GB:Q96518); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G30170.1); similar to Haem peroxidase, plant/funga"
MSGI1_13252	NODE_1172_length_651_cov_21.852535	15.1	22.1	3.9	5.2	0	0	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_115079	NODE_11728_length_87_cov_124.091957	0.2	0.3	138	0.3	0	-8.8	-9.4	0	not assigned.unknown	not assigned.unknown
MSGI1_56177	NODE_11732_length_222_cov_6.918919	2.3	5.1	19.9	12.9	0	0	-3.1	0	"lipid metabolism.'exotics' (steroids, squalene etc).sphingolipids"	"acid phosphatase, putative  similar to acid phosphatase, putative [Arabidopsis thaliana] (TAIR:AT1G14290.1); similar to Sterol desaturase family protein [Solanum demissum] (GB:AAU93587.1); contains InterPro domain SUR2-type hydroxylase/desaturase, cataly"
MSGI1_100525	NODE_11735_length_133_cov_32.082706	9.6	14.8	0.5	1.8	0	0	0	3	amino acid metabolism.synthesis.aspartate family.methionine.methionine synthase	"AtMS2 (Arabidopsis thaliana methionine synthase 2); 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase Encodes a cytosolic methionine synthase, involved in methionine regeneration via the activated methyl cycle (or SAM cycle) similar"
MSGI1_61724	NODE_1174_length_204_cov_110.367645	51.8	86	136	132.1	0	0	-1.4	0	protein.degradation.cysteine protease	"cathepsin B-like cysteine protease, putative  similar to cathepsin B-like cysteine protease, putative [Arabidopsis thaliana] (TAIR:AT1G02300.1); similar to Peptidase C1A, papain; Somatotropin hormone [Medicago truncatula] (GB:ABD32840.1); contains InterP"
MSGI1_102269	NODE_11741_length_131_cov_4.862596	0.1	0	0.3	10.4	0	5.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_19725	NODE_11752_length_510_cov_15.682353	18.4	9.7	34.4	3.4	0	-3.3	0	0	RNA.regulation of transcription.MADS box transcription factor family	AGL8 (AGAMOUS-LIKE 8); transcription factor MADS box gene negatively regulated  by APETALA1 Identical to Agamous-like MADS-box protein AGL8 (Floral homeotic protein AGL8) (Transcription factor FRUITFULL) (AGL8) [Arabidopsis Thaliana] (GB:Q38876); similar
MSGI1_19725	NODE_11752_length_510_cov_15.682353	18.4	9.7	34.4	3.4	0	-3.3	0	0	development.unspecified	AGL8 (AGAMOUS-LIKE 8); transcription factor MADS box gene negatively regulated  by APETALA1 Identical to Agamous-like MADS-box protein AGL8 (Floral homeotic protein AGL8) (Transcription factor FRUITFULL) (AGL8) [Arabidopsis Thaliana] (GB:Q38876); similar
MSGI1_56719	NODE_11757_length_220_cov_65.909088	4.9	43	20.4	1.4	3.1	-3.9	0	4.9	RNA.regulation of transcription.C2H2 zinc finger family	"zinc finger (C2H2 type) family protein (ZAT11)  similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT3G53600.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE93962.1); contains InterPro domain Zinc finger, C2"
MSGI1_45175	NODE_11763_length_268_cov_17.735075	2.5	20.1	4	16.1	3	0	0	0	transport.phosphate	PHO1 (PHOSPHATE 1) mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains. Identical
MSGI1_84396	NODE_11783_length_155_cov_157.258072	10.3	70.4	113.2	26.7	2.8	-2.1	-3.5	1.4	protein.targeting.secretory pathway.vacuole	GAMMA-VPE (Vacuolar processing enzyme gamma); cysteine-type endopeptidase Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types
MSGI1_57268	NODE_11803_length_218_cov_11.738532	0	0	13.6	18.7	0	0	-4.8	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_112799	NODE_11807_length_107_cov_35.822430	4.2	2.7	41.5	2.7	0	-3.9	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_101442	NODE_11818_length_132_cov_53.954544	15.3	39.5	40.5	44.7	1.4	0	0	0	RNA.regulation of transcription.MYB-related transcription factor family	DNA-binding family protein  similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G47390.1); similar to MYB transcription factor MYB138 [Glycine max] (GB:ABH02859.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287)
MSGI1_29442	NODE_11821_length_375_cov_76.530670	37.2	61.3	19.9	29.7	0	0	0	1	not assigned.unknown	not assigned.unknown
MSGI1_21169	NODE_11828_length_482_cov_36.564316	5.7	42.1	13.3	35.9	2.9	1.4	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	auxin-responsive family protein  similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT3G61900.1); similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G00880.1); similar to Auxin responsive SAUR protein [Medicago
MSGI1_85642	NODE_11831_length_153_cov_14.313725	1.3	0.5	17.9	2.8	0	-2.7	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_29153	NODE_11833_length_378_cov_8.335979	0.1	0.1	5.5	11.5	0	0	0	-6.8	protein.degradation.ubiquitin.E3.RING	zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G60250.1); similar to Os12g0631200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067341.1); similar t
MSGI1_38757	NODE_11834_length_302_cov_8.145696	0	0	19.5	2.2	0	-3.1	-5.3	0	not assigned.unknown	not assigned.unknown
MSGI1_64200	NODE_1184_length_197_cov_25.670052	8.9	14.2	32.9	12	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_91865	NODE_11844_length_144_cov_9.763889	0	0	21.8	0	0	-5.4	-5.4	0	not assigned.unknown	not assigned.unknown
MSGI1_79566	NODE_11845_length_163_cov_7.865031	11.7	7.8	0	0	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_50260	NODE_11847_length_245_cov_30.718367	17.5	26.3	29.6	65.4	0	1.1	0	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_61012	NODE_11848_length_206_cov_38.723301	14.9	4.5	40.7	8.8	0	-2.2	-1.4	0	transport.peptides and oligopeptides	"proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G16180.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32296.1); sim"
MSGI1_55346	NODE_11851_length_225_cov_34.253334	2.8	24.6	4.2	13.1	3.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_49318	NODE_11856_length_249_cov_11.128514	0	0	24.8	6.9	0	0	-5.6	0	not assigned.unknown	not assigned.unknown
MSGI1_111854	NODE_11867_length_115_cov_5.878261	16.8	33.6	8.6	7.7	0	0	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_42212	NODE_11867_length_283_cov_39.911659	3.2	18	13	15.1	2.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_116831	NODE_11875_length_72_cov_93.666664	0	0	61.2	41.2	0	0	-6.9	-6.4	not assigned.unknown	not assigned.unknown
MSGI1_102268	NODE_11876_length_131_cov_8.312977	1.7	6.4	16.7	4.7	0	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_35509	NODE_11886_length_324_cov_39.416668	220.2	130.5	81.8	128.7	0	0	1.4	0	protein.synthesis.misc ribososomal protein	RPL34 (RIBOSOMAL PROTEIN L34); structural constituent of ribosome putative 60S ribosomal protein L34 Identical to 60S ribosomal protein L34-2 (RPL34B) [Arabidopsis Thaliana] (GB:Q9FE65); similar to 60S ribosomal protein L34 (RPL34A) [Arabidopsis thaliana]
MSGI1_103195	NODE_11899_length_130_cov_18.246155	24.4	8.1	41.7	9.7	0	-2.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_19054	NODE_11919_length_522_cov_36.199234	15.4	17.6	45.1	10.2	0	-2.1	-1.6	0	stress.abiotic.drought/salt	"ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis. similar to senescence/dehydration-associated protein-"
MSGI1_19054	NODE_11919_length_522_cov_36.199234	15.4	17.6	45.1	10.2	0	-2.1	-1.6	0	development.unspecified	"ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis. similar to senescence/dehydration-associated protein-"
MSGI1_14431	NODE_11921_length_618_cov_45.093853	14	23.4	45.8	23	0	0	-1.7	0	transport.unspecified cations	"NHX1 (NA+/H+ EXCHANGER); sodium:hydrogen antiporter Encodes a vacuolar sodium/proton antiporter involved in salt tolerance, ion homeostasis, and leaf development. Identical to Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1) (NHE-1) (NHX1) [Arabidops"
MSGI1_2023	NODE_1194_length_1539_cov_58.738792	90.4	76.9	0	0	0	0	7.5	7.3	not assigned.unknown	not assigned.unknown
MSGI1_52172	NODE_11942_length_237_cov_108.907173	50	24.2	14.3	17.5	0	0	1.8	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	ELI3-1 (ELICITOR-ACTIVATED GENE 3); oxidoreductase/ zinc ion binding Encodes a putative mannitol dehydrogenase. Identical to Probable mannitol dehydrogenase 1 (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase 1) (ELI3-1) [Arabidopsis Thaliana] (GB:Q02
MSGI1_10043	NODE_1196_length_760_cov_20.580263	0.6	0.6	28.6	28.7	0	0	-5.6	-5.6	transport.amino acids	
MSGI1_77334	NODE_11967_length_167_cov_90.407188	14.3	42.4	11.9	40.5	1.6	1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_38449	NODE_12007_length_304_cov_16.207237	2.5	2.1	21.7	1.8	0	-3.6	-3.1	0	cell.organisation	"dynein light chain, putative  similar to dynein light chain, putative [Arabidopsis thaliana] (TAIR:AT3G16120.1); similar to Os02g0269200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046516.1); similar to Dynein light chain, type 1 [Medicago truncat"
MSGI1_77926	NODE_12012_length_166_cov_9.361445	0	0	20.4	21.7	0	0	-5.4	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_75838	NODE_12030_length_170_cov_22.311764	6	6.5	46.1	13.9	0	-1.7	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_28422	NODE_12036_length_386_cov_18.119171	9.4	22.6	32.6	16.2	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_32210	NODE_1204_length_349_cov_136.687683	82.4	57.4	23.2	64.4	0	1.5	1.8	0	cell wall	glycosyl hydrolase family protein 17  similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT5G08000.1); similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT5G61130.1); similar to putative glycosyl hydrol
MSGI1_32210	NODE_1204_length_349_cov_136.687683	82.4	57.4	23.2	64.4	0	1.5	1.8	0	"misc.beta 1,3 glucan hydrolases"	glycosyl hydrolase family protein 17  similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT5G08000.1); similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT5G61130.1); similar to putative glycosyl hydrol
MSGI1_98060	NODE_12045_length_136_cov_32.169117	37.7	34.1	111.9	19.6	0	-2.5	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_45174	NODE_12054_length_268_cov_30.358210	32	37.9	13.9	9.4	0	0	0	2	not assigned.unknown	not assigned.unknown
MSGI1_57901	NODE_12058_length_216_cov_6.601852	1.6	1.1	27	13.9	0	0	-4.1	-3.7	not assigned.unknown	not assigned.unknown
MSGI1_81336	NODE_12061_length_160_cov_13.693750	5.2	28.9	13.2	21.8	2.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_40709	NODE_12071_length_291_cov_16.560137	19.5	21.4	0.3	0.4	0	0	6	5.7	stress.biotic	leucine-rich repeat family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT5G27060.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G05650.1); similar to disease resistance family prote
MSGI1_40709	NODE_12071_length_291_cov_16.560137	19.5	21.4	0.3	0.4	0	0	6	5.7	cell wall	leucine-rich repeat family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT5G27060.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G05650.1); similar to disease resistance family prote
MSGI1_48413	NODE_12074_length_253_cov_34.383400	20.6	28.7	48.5	10.4	0	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_19783	NODE_12076_length_509_cov_29.227898	1.2	3.4	32.1	2.4	0	-3.7	-4.7	0	development.unspecified	seven in absentia (SINA) family protein  Identical to E3 ubiquitin-protein ligase SINAT3 (EC 6.3.2.-) (Seven in absentia homolog 3) (SINAT3) [Arabidopsis Thaliana] (GB:Q84JL3;GB:Q8LFQ3;GB:Q9M359); similar to seven in absentia (SINA) family protein [Arabi
MSGI1_36059	NODE_12079_length_320_cov_13.962500	17.7	16.8	48.7	8.4	0	-2.5	-1.5	0	stress.biotic	"disease resistance protein (CC-NBS-LRR class), putative  Identical to Putative disease resistance protein At1g59780 [Arabidopsis Thaliana] (GB:Q9XIF0); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G58"
MSGI1_49317	NODE_12080_length_249_cov_8.445783	1.8	1.5	25.3	18.2	0	0	-3.8	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_41424	NODE_12081_length_287_cov_6.888502	8.5	44.4	11.2	14.8	2.4	0	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_78443	NODE_12085_length_165_cov_151.551514	122.2	71.9	69.3	9.1	0	-2.9	0	3	cell wall.degradation.mannan-xylose-arabinose-fucose	"BXL2 (BETA-XYLOSIDASE 2); hydrolase, hydrolyzing O-glycosyl compounds encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. similar t"
MSGI1_27178	NODE_12090_length_400_cov_44.397499	0.7	1.8	11.9	1.5	0	0	-4.1	0	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G25560.1); similar to PGPD14 [Petunia x hybrida] (GB:AAD02556.1); contains InterPro domain Zinc finger, CH"
MSGI1_41256	NODE_12100_length_288_cov_15.006945	17.1	29.1	0.1	0.1	0	0	7.4	8.2	not assigned.unknown	not assigned.unknown
MSGI1_97207	NODE_12101_length_137_cov_11.072992	12.2	15.3	0	0	0	0	4.6	4.9	amino acid metabolism.synthesis.histidine.histidinol dehydrogenase	"ATHDH (HISTIDINOL DEHYDROGENASE) Encodes histidinol dehydrogenase. Up-regulated in response to UV-B. Identical to Histidinol dehydrogenase, chloroplast precursor (EC 1.1.1.23) (HDH) (HDH) [Arabidopsis Thaliana] (GB:Q9C5U8;GB:Q8LA77;GB:Q9FN00); similar to"
MSGI1_47994	NODE_12107_length_255_cov_16.854902	20.6	0.1	3.1	0.2	-7.7	0	2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_34266	NODE_12111_length_333_cov_7.207207	5.8	25.4	7.5	20.6	2.1	0	0	0	transport.ABC transporters and multidrug resistance systems	"ABC transporter family protein  Identical to Multidrug resistance protein 13 (P-glycoprotein 15) (MDR13) [Arabidopsis Thaliana] (GB:Q9LHD1); similar to PGP18 (P-GLYCOPROTEIN 18), ATPase, coupled to transmembrane movement of substances [Arabidopsis thalia"
MSGI1_6106	NODE_12128_length_965_cov_21.246632	31	0.7	8.2	2.7	-5.5	0	1.9	0	secondary metabolism.flavonoids.dihydroflavonols	UDP-glucoronosyl/UDP-glucosyl transferase family protein The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flav
MSGI1_6106	NODE_12128_length_965_cov_21.246632	31	0.7	8.2	2.7	-5.5	0	1.9	0	misc.UDP glucosyl and glucoronyl transferases	UDP-glucoronosyl/UDP-glucosyl transferase family protein The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flav
MSGI1_19591	NODE_1213_length_513_cov_22.253412	3.9	6.2	40.9	4.1	0	-3.3	-3.4	0	transport.ABC transporters and multidrug resistance systems	ABC transporter family protein  Identical to White-brown complex homolog protein 26 (WBC26) [Arabidopsis Thaliana] (GB:Q84TH5;GB:Q949Y4;GB:Q9C8W6); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G31770.1); similar to ABC transp
MSGI1_52997	NODE_12140_length_234_cov_15.863248	21.6	14.9	23.4	38.4	0	0	0	-1.4	misc.misc2	"epoxide hydrolase, putative  similar to epoxide hydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G02340.1); similar to Alpha/beta hydrolase [Medicago truncatula] (GB:ABE85693.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR0003"
MSGI1_115321	NODE_12142_length_85_cov_16.588236	12.3	19.4	0	0	0	0	4.6	5.3	RNA.RNA binding	RNA recognition motif (RRM)-containing protein  similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G17720.1); similar to RNA recognition motif (RRM)-containing protein [Brassica oleracea] (GB:ABD65158.1); contains I
MSGI1_73451	NODE_12150_length_175_cov_61.714287	42.3	71.5	15.1	21.5	0	0	1.5	1.7	not assigned.unknown	not assigned.unknown
MSGI1_77333	NODE_12160_length_167_cov_175.700592	95.1	37.6	30.5	26	-1.3	0	1.6	0	protein.degradation.subtilases	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G20430.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabid"
MSGI1_77333	NODE_12160_length_167_cov_175.700592	95.1	37.6	30.5	26	-1.3	0	1.6	0	cell wall	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G20430.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabid"
MSGI1_96457	NODE_12161_length_138_cov_44.913044	22.4	9.7	53.7	8.6	0	-2.6	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_49511	NODE_12167_length_248_cov_17.012096	16.7	35.3	16.3	64.9	0	2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_17800	NODE_12170_length_542_cov_36.584869	35.9	0.2	11.8	0.2	-7.5	-5.9	1.6	0	cell wall	"gibberellin-responsive protein, putative  similar to GASA4 (GAST1 PROTEIN HOMOLOG 4) [Arabidopsis thaliana] (TAIR:AT5G15230.1); similar to Gip1-like protein [Populus tomentosa] (GB:AAV84588.1); contains InterPro domain Gibberellin regulated protein; (Int"
MSGI1_17800	NODE_12170_length_542_cov_36.584869	35.9	0.2	11.8	0.2	-7.5	-5.9	1.6	0	hormone metabolism.gibberelin.induced-regulated-responsive-activated	"gibberellin-responsive protein, putative  similar to GASA4 (GAST1 PROTEIN HOMOLOG 4) [Arabidopsis thaliana] (TAIR:AT5G15230.1); similar to Gip1-like protein [Populus tomentosa] (GB:AAV84588.1); contains InterPro domain Gibberellin regulated protein; (Int"
MSGI1_51143	NODE_12173_length_241_cov_19.784233	24.1	22.5	5.9	15.7	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_70263	NODE_12179_length_182_cov_13.082417	7.4	10.9	32.1	9.1	0	-1.8	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_106937	NODE_12185_length_126_cov_45.880951	26.1	7	67.2	7	-1.9	-3.3	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_122535	NODE_12188_length_61_cov_19.590164	11.7	10.8	0	0	0	0	4.5	4.4	minor CHO metabolism.callose	"ATGSL10 (GLUCAN SYNTHASE-LIKE 10); 1,3-beta-glucan synthase encodes a gene similar to callose synthase similar to CALS1 (CALLOSE SYNTHASE 1), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G05570.1); similar to ATGSL08 (GLUCAN"
MSGI1_31063	NODE_12189_length_359_cov_13.615599	41.4	11.9	17.7	18.5	-1.8	0	0	0	protein.synthesis.mito/plastid ribosomal protein.unknown	"ribosomal protein L29 family protein  Identical to 50S ribosomal protein L29, chloroplast precursor (CL29) (RPL29) [Arabidopsis Thaliana] (GB:Q9FJP3); similar to 50S ribosomal protein L29, chloroplast precursor (CL29) (GB:Q9SWI6); contains InterPro domai"
MSGI1_94154	NODE_12196_length_141_cov_10.085107	2	2.9	3.6	21.4	0	2.6	0	-2.9	fermentation.aldehyde dehydrogenase	ALDH2C4 (REDUCED EPIDERMAL FLUORESCENCE1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) Arabidopsis thaliana aldehyde dehydrogenase AtALDH1a mRNA. a sinapaldehyde dehydrogenase  catalyzes both the oxidation of coniferylaldehyde and
MSGI1_22417	NODE_12201_length_464_cov_53.411636	30.7	32.5	0.5	1	0	0	5.9	5	not assigned.unknown	not assigned.unknown
MSGI1_22953	NODE_12207_length_457_cov_25.698030	19.4	50.2	19.2	25.2	1.4	0	0	0	transporter.sugars.sucrose	ATSUC5/SUC5 (SUCROSE-PROTON SYMPORTER 5); carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation. Identic
MSGI1_51141	NODE_12216_length_241_cov_4.601660	0	0	5.1	12.9	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_103193	NODE_12231_length_130_cov_11.646153	0	0	15.3	0	0	-4.9	-4.9	0	minor CHO metabolism.raffinose family.galactinol synthases.known	"ATGOLS1 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 1); transferase, transferring hexosyl groups  similar to ATGOLS2 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 2), transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabido"
MSGI1_104992	NODE_12232_length_128_cov_21.929688	0	0	127.7	44.8	0	-1.5	-8	-6.5	not assigned.unknown	not assigned.unknown
MSGI1_32898	NODE_12245_length_343_cov_16.137026	12.1	21.5	2.4	2.7	0	0	0	3	RNA.processing.ribonucleases	"XRN2 (EXORIBONUCLEASE 2); 5'-3' exonuclease/ nucleic acid binding Encodes a putative exoribonuclease. similar to AIN1 (ACC INSENSITIVE 1), 5'-3' exonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G54490.1); similar to XRN3 (5'-3' exoribonu"
MSGI1_21566	NODE_12248_length_476_cov_24.233192	10	16.6	34.5	29.9	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_58181	NODE_12251_length_215_cov_9.534883	2.2	3	12.7	17.4	0	0	0	-2.5	secondary metabolism.phenylpropanoids	"aminotransferase class I and II family protein  similar to AAT/ATAAT/MEE17 (maternal effect embryo arrest 17), aspartate transaminase [Arabidopsis thaliana] (TAIR:AT2G22250.3); similar to Os09g0453800 [Oryza sativa (japonica cultivar-group)] (GB:NP_00106"
MSGI1_122533	NODE_12253_length_61_cov_139.360657	65.6	58.4	13.6	18.9	0	0	2.3	1.6	tetrapyrrole synthesis.magnesium chelatase	GUN5 (GENOMES UNCOUPLED 5) Encodes magnesium chelatase involved in plastid-to-nucleus signal transduction. similar to Mg protoporphyrin IX chelatase [Nicotiana tabacum] (GB:AAB97152.1); similar to protoporphyrin IX:Mg Chelatase [Antirrhinum majus] (GB:CA
MSGI1_33057	NODE_12259_length_342_cov_53.859650	40.4	36.5	3.7	15.5	0	0	3.4	0	cell wall.degradation.pectate lyases and polygalacturonases	"PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2); protein binding polygalacturonase inhibiting protein 2 (PGIP2) mRNA, Identical to Polygalacturonase inhibitor 2 precursor (Polygalacturonase-inhibiting protein) (PGIP-2) (PGIP2) [Arabidopsis Thaliana] (GB:Q"
MSGI1_77923	NODE_12274_length_166_cov_48.108433	25.2	0.8	46.7	5.5	-5	-3.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_114450	NODE_12274_length_93_cov_28.483871	15.5	16.8	46.2	14.1	0	-1.7	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_62377	NODE_12286_length_202_cov_9.554456	0	0	7	21.9	0	0	0	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_45846	NODE_12286_length_265_cov_19.766037	24.3	34.6	0	0.3	0	0	5.6	6.8	not assigned.unknown	not assigned.unknown
MSGI1_122529	NODE_12304_length_61_cov_10.704918	0.2	0	13.2	13.6	0	0	-6	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_113363	NODE_12317_length_103_cov_43.417477	33.6	28.9	13.4	37.1	0	1.5	0	0	cell wall	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT1G25510.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japoni
MSGI1_113363	NODE_12317_length_103_cov_43.417477	33.6	28.9	13.4	37.1	0	1.5	0	0	RNA.regulation of transcription.unclassified	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT1G25510.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japoni
MSGI1_21022	NODE_12321_length_484_cov_27.737604	9.7	22.1	31.8	16.5	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_30779	NODE_12323_length_362_cov_13.607735	12.1	7.9	40.1	5.8	0	-2.8	-1.7	0	"misc.gluco-, galacto- and mannosidases"	"glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G54570.1); similar to Os03g0212800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049358.1); similar to beta-glucosidase, putative [Me"
MSGI1_22864	NODE_12327_length_458_cov_9.585153	14.5	0.6	4.6	2.1	-4.6	0	0	0	DNA.synthesis/chromatin structure	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G36355.1); similar to hypothetical protein [Ipomoea trifida] (GB:AAS79606.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Protein of unknown function DUF662;
MSGI1_34676	NODE_12329_length_330_cov_11.430303	15.6	0.6	5	1.3	-4.7	0	0	0	lipid metabolism.FA synthesis and FA elongation.beta ketoacyl CoA synthase	beta-ketoacyl-CoA synthase family protein  Identical to 3-ketoacyl-CoA synthase 3 (EC 2.3.1.-) (KCS-3) (Very-long-chain fatty acid condensing enzyme 3) (VLCFA condensing enzyme 3) (KCS3) [Arabidopsis Thaliana] (GB:Q9LQP8); similar to beta-ketoacyl-CoA sy
MSGI1_114346	NODE_12331_length_94_cov_107.723404	82.6	53.7	0	0	0	0	7.4	6.7	cell wall	"peroxidase, putative  Identical to Peroxidase 52 precursor (EC 1.11.1.7) (Atperox P52) (ATP49) (PER52) [Arabidopsis Thaliana] (GB:Q9FLC0); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to Peroxidase P7 (TP7) (GB:P0043"
MSGI1_114346	NODE_12331_length_94_cov_107.723404	82.6	53.7	0	0	0	0	7.4	6.7	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 52 precursor (EC 1.11.1.7) (Atperox P52) (ATP49) (PER52) [Arabidopsis Thaliana] (GB:Q9FLC0); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to Peroxidase P7 (TP7) (GB:P0043"
MSGI1_107925	NODE_12333_length_125_cov_280.015991	98.3	50.1	179	55.5	0	-1.7	0	0	transport.metal	CAX3 (cation exchanger 3); cation:cation antiporter  Identical to Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger 3) (Ca(2+)/H(+) antiporter CAX3) (CAX3) [Arabidopsis Thaliana] (GB:Q93Z81;GB:O65022;GB:Q0WUY4;GB:Q9LKW8); similar to CAX1 (CATION
MSGI1_107925	NODE_12333_length_125_cov_280.015991	98.3	50.1	179	55.5	0	-1.7	0	0	transport.calcium	CAX3 (cation exchanger 3); cation:cation antiporter  Identical to Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger 3) (Ca(2+)/H(+) antiporter CAX3) (CAX3) [Arabidopsis Thaliana] (GB:Q93Z81;GB:O65022;GB:Q0WUY4;GB:Q9LKW8); similar to CAX1 (CATION
MSGI1_111853	NODE_12336_length_115_cov_106.313042	77.4	48.7	65.7	24.3	0	-1.4	0	0	cell wall.cellulose synthesis.cellulose synthase	"CESA3 (CELLULASE SYNTHASE 3); cellulose synthase/ transferase, transferring glycosyl groups cellulose synthase. Involved in defense signaling. Identical to Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC 2.4.1.12) (AtCesA-3) (Constitutive expr"
MSGI1_54292	NODE_12345_length_229_cov_26.248909	0.3	0	14.9	50	0	1.7	-5.6	-6.6	amino acid metabolism.degradation.glutamate family.proline	"ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5, PROLINE OXIDASE); proline dehydrogenase Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress.  The pro"
MSGI1_104990	NODE_12346_length_128_cov_86.304688	11.7	3.8	143.6	6.6	0	-4.4	-3.6	0	minor CHO metabolism.raffinose family.raffinose synthases.known	"SIP1 (SEED IMBIBITION 1-LIKE); galactinol-sucrose galactosyltransferase/ hydrolase, hydrolyzing O-glycosyl compounds Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount o"
MSGI1_64570	NODE_12350_length_196_cov_24.214285	25.4	23.7	6.4	15.8	0	0	2	0	stress.abiotic.drought/salt	"dehydration-responsive protein, putative  similar to ERD3 (EARLY-RESPONSIVE TO DEHYDRATION 3) [Arabidopsis thaliana] (TAIR:AT4G19120.2); similar to Generic methyltransferase [Medicago truncatula] (GB:ABE86303.1); contains InterPro domain Protein of unkno"
MSGI1_111487	NODE_12355_length_118_cov_40.177967	18.2	6.3	3.3	4.2	0	0	2.5	0	major CHO metabolism.synthesis.starch.transporter	"AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding mitochondrial ADP/ATP carrier Identical to ADP,ATP carrier protein 1, mitochondrial precursor (ADP/ATP translocase 1) (Adenine nucleotide translocator 1) (ANT 1) (ANT1) [Arabidopsis Thaliana] (GB:P311"
MSGI1_111487	NODE_12355_length_118_cov_40.177967	18.2	6.3	3.3	4.2	0	0	2.5	0	transport.metabolite transporters at the envelope membrane	"AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding mitochondrial ADP/ATP carrier Identical to ADP,ATP carrier protein 1, mitochondrial precursor (ADP/ATP translocase 1) (Adenine nucleotide translocator 1) (ANT 1) (ANT1) [Arabidopsis Thaliana] (GB:P311"
MSGI1_51424	NODE_12368_length_240_cov_14.700000	3.3	5.2	20	5.5	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_122521	NODE_12379_length_61_cov_200.704926	93.8	58.3	25.5	45.3	0	0	1.9	0	TCA / org. transformation.other organic acid transformaitons.atp-citrate lyase	ACLB-1 (ATP-citrate lyase B-1) One of the two genes encoding subunit B of the trimeric enzyme ATP Citrate lyase similar to ACLB-2 (ATP-citrate lyase B-2) [Arabidopsis thaliana] (TAIR:AT5G49460.1); similar to ATP citrate lyase a-subunit [Lupinus albus] (G
MSGI1_9943	NODE_12380_length_764_cov_10.260471	18.3	3	8.7	7.6	-2.6	0	0	0	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit JP650 precursor (Aromatic-rich glycoprotein JP650) (JP650) [Arabidopsis Thaliana] (GB:P92990;GB:O64599;GB:Q8H7B8;GB:Q93ZQ4); simil"
MSGI1_29539	NODE_12382_length_374_cov_99.556152	80.6	16.1	12.9	14	-2.3	0	2.6	0	cell wall.modification	"ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3) putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thal"
MSGI1_91142	NODE_1241_length_145_cov_7.475862	0.1	0	20.1	18.8	0	0	-7.7	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_71560	NODE_12421_length_179_cov_83.301674	44.6	23.9	8.1	8.8	0	0	2.5	0	secondary metabolism.simple phenols	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_12969	NODE_12425_length_659_cov_20.726858	6.1	7	45.3	7.4	0	-2.6	-2.9	0	transport.ABC transporters and multidrug resistance systems	ABC transporter family protein  Identical to White-brown complex homolog protein 23 (WBC23) [Arabidopsis Thaliana] (GB:Q93YS4;GB:Q94EX0;GB:Q9FG17); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G52310.1); similar to Putative AB
MSGI1_55925	NODE_12433_length_223_cov_14.686099	8.1	43.4	24.6	17.1	2.4	0	0	1.3	not assigned.unknown	not assigned.unknown
MSGI1_45647	NODE_12434_length_266_cov_15.383459	26.8	8.3	26.8	6.1	0	-2.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_35211	NODE_12434_length_326_cov_47.015339	32.7	43.7	0.5	0.4	0	0	6	6.8	protein.folding	ATTCP-1 (Arabidopsis thaliana T-complex protein 1 alpha subunit); ATP binding / protein binding / unfolded protein binding Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). Identical to T-complex protein
MSGI1_117882	NODE_12435_length_64_cov_17.921875	11.7	12.6	0.4	0	0	0	4.9	4.7	transport.ABC transporters and multidrug resistance systems	"ATPDR12/PDR12 (PLEIOTROPIC DRUG RESISTANCE 12); ATPase, coupled to transmembrane movement of substances ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed i"
MSGI1_13207	NODE_12438_length_652_cov_28.122700	26.6	3.3	15.9	4.5	-3	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_13207	NODE_12438_length_652_cov_28.122700	26.6	3.3	15.9	4.5	-3	0	0	0	secondary metabolism.flavonoids.flavonols	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arab"
MSGI1_69815	NODE_12443_length_183_cov_31.256830	32.5	4.5	3.4	0.4	-2.9	0	3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_63137	NODE_12447_length_200_cov_9.540000	5.6	15.3	4.1	0.8	0	0	0	4.3	protein.postranslational modification	protein phosphatase 2C-related / PP2C-related  similar to protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT1G48040.1); similar to Protein phosphatase 2C [Medicago truncatula] (GB:ABE82399.1); contains InterPro domain Protein phosphatase 2C; (Int
MSGI1_94151	NODE_12456_length_141_cov_8.751773	0.6	0	8.2	19.1	0	0	0	-5.3	cell.organisation	myosin-related  similar to CIP1 (COP1-INTERACTIVE PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G41790.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to Os03g0216900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049388
MSGI1_59133	NODE_12456_length_212_cov_12.825472	11.1	8.9	34.8	4.2	0	-3.1	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_113717	NODE_12463_length_100_cov_72.760002	61.6	10.1	7.6	14.7	-2.6	0	3	0	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit JP650 precursor (Aromatic-rich glycoprotein JP650) (JP650) [Arabidopsis Thaliana] (GB:P92990;GB:O64599;GB:Q8H7B8;GB:Q93ZQ4); simil"
MSGI1_53517	NODE_12466_length_232_cov_20.099138	0.8	1.1	13.8	47.1	0	1.8	-4.1	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_50257	NODE_12476_length_245_cov_62.240818	18.1	0.6	8.1	0.3	-4.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_70699	NODE_12478_length_181_cov_12.861878	13.3	0	0.2	0	-4.7	0	6.1	0	not assigned.unknown	not assigned.unknown
MSGI1_13924	NODE_1248_length_632_cov_32.181961	12.2	6.5	42.7	6.1	0	-2.8	-1.8	0	RNA.regulation of transcription.MADS box transcription factor family	AGL8 (AGAMOUS-LIKE 8); transcription factor MADS box gene negatively regulated  by APETALA1 Identical to Agamous-like MADS-box protein AGL8 (Floral homeotic protein AGL8) (Transcription factor FRUITFULL) (AGL8) [Arabidopsis Thaliana] (GB:Q38876); similar
MSGI1_13924	NODE_1248_length_632_cov_32.181961	12.2	6.5	42.7	6.1	0	-2.8	-1.8	0	development.unspecified	AGL8 (AGAMOUS-LIKE 8); transcription factor MADS box gene negatively regulated  by APETALA1 Identical to Agamous-like MADS-box protein AGL8 (Floral homeotic protein AGL8) (Transcription factor FRUITFULL) (AGL8) [Arabidopsis Thaliana] (GB:Q38876); similar
MSGI1_66033	NODE_12480_length_192_cov_87.333336	58.8	33.9	15	13.5	0	0	2	0	signalling.G-proteins	"RAB11 (ARABIDOPSIS RAB GTPASE HOMOLOG A1B); GTP binding small GTP-binding protein (Rab11)similar to YPT3/RAB11 proteins in yeast and mammals, respectively. YPT3/RAB11 is involved in intracellular protein trafficking. Identical to Ras-related protein Rab1"
MSGI1_38263	NODE_1249_length_305_cov_5.895082	4.9	98.7	6.6	103.2	4.3	4	0	0	amino acid metabolism.synthesis.glutamate family.arginine.arginosuccinate synthase	"arginosuccinate synthase family  Identical to Argininosuccinate synthase, chloroplast precursor (EC 6.3.4.5) (Citrulline--aspartate ligase) [Arabidopsis Thaliana] (GB:Q9SZX3;GB:Q8VZ47); similar to Ar (GB:ABE78918.1); similar to Os12g0235800 [Oryza sativa"
MSGI1_72545	NODE_12492_length_177_cov_6.395480	6.8	10.8	0	0	0	0	0	4.4	"misc.gluco-, galacto- and mannosidases"	glycosyl hydrolase family 38 protein  similar to glycosyl hydrolase family 38 protein [Arabidopsis thaliana] (TAIR:AT3G26720.1); similar to glycosyl hydrolase family 38 protein [Arabidopsis thaliana] (TAIR:AT5G66150.1); similar to Glycosyl hydrolases fam
MSGI1_36603	NODE_12495_length_316_cov_17.196203	0.7	16.5	22.2	8.5	4.6	0	-5	0	protein.degradation.ubiquitin.E3.SCF.FBOX	F-box family protein  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G06240.1); similar to Cyclin-like F-box; F-box protein interaction domain [Medicago truncatula] (GB:ABE90596.1); similar to Cyclin-like F-box; F-box protein interaction
MSGI1_110964	NODE_12504_length_122_cov_44.081966	37.9	17.2	10.9	12.3	0	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_23633	NODE_12508_length_447_cov_18.319910	0.6	0.2	17.7	27.1	0	0	-4.9	-7.1	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2A.4 (HTA12) [Arabidopsis Thaliana] (GB:Q9LZ46); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT5G59870.1); similar to Histone H2A (GB:Q9M531); contains InterPro domain Histone-fold;"
MSGI1_5340	NODE_12509_length_1024_cov_10.028320	10.6	20.2	68.5	10.5	0	-2.7	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_41422	NODE_12512_length_287_cov_24.445993	4.1	23.4	20.2	29.1	2.5	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_74827	NODE_12513_length_172_cov_4.627907	0.7	1.5	5.4	16	0	0	0	-3.4	not assigned.unknown	not assigned.unknown
MSGI1_112978	NODE_12541_length_106_cov_122.283020	84.4	78.5	52	103.4	0	1	0	0	OPP.oxidative PP.6-phosphogluconate dehydrogenase	6-phosphogluconate dehydrogenase family protein  similar to 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT1G64190.1); similar to 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT5G41670.2); s
MSGI1_88321	NODE_12555_length_149_cov_260.523499	107.7	43.2	34.7	38.5	-1.3	0	1.6	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L28 (RPL28C)  Identical to 60S ribosomal protein L28-2 (RPL28C) [Arabidopsis Thaliana] (GB:Q9M0E2); similar to 60S ribosomal protein L28 (RPL28A) [Arabidopsis thaliana] (TAIR:AT2G19730.3); similar to unknown [Solanum tuberosum] (GB:A
MSGI1_19549	NODE_12557_length_514_cov_8.980545	6.7	31.7	14	21.4	2.2	0	0	0	hormone metabolism.cytokinin.synthesis-degradation	"CKX7 (CYTOKININ OXIDASE 7); oxidoreductase This gene used to be called AtCKX5. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins. Identical to Cytokinin dehydrogenase 7 (EC 1."
MSGI1_53516	NODE_12560_length_232_cov_14.577586	8.2	17.3	0	0	0	0	0	5.1	not assigned.unknown	not assigned.unknown
MSGI1_27177	NODE_1257_length_400_cov_149.059998	58.3	33.9	143.6	16.7	0	-3.1	-1.3	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1)"
MSGI1_27177	NODE_1257_length_400_cov_149.059998	58.3	33.9	143.6	16.7	0	-3.1	-1.3	0	"misc.gluco-, galacto- and mannosidases"	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1)"
MSGI1_68107	NODE_12575_length_187_cov_39.379681	17.7	3.2	78	6.5	-2.5	-3.6	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_111144	NODE_1260_length_121_cov_72.107437	59.5	9.1	210.1	22	-2.7	-3.3	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_117245	NODE_12601_length_69_cov_49.753624	33.1	17	9.4	12	0	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_57900	NODE_12606_length_216_cov_14.828704	0	0	14	33.8	0	0	-4.8	-6.1	not assigned.unknown	not assigned.unknown
MSGI1_62745	NODE_12618_length_201_cov_11.865672	0	0.1	28.1	15.5	0	0	-5.8	-7.3	transport.peptides and oligopeptides	proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G54140.1); similar to Os06g0264500 [Oryza sativa (japonica cultivar-group)] (GB:NP_00105
MSGI1_117094	NODE_1262_length_70_cov_45.671429	32.2	11.1	0	0	0	0	6	4.5	misc.GDSL-motif lipase	GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G56670.1); similar to Os01g0329900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042924.1); similar to hypothetical pro
MSGI1_10549	NODE_12627_length_740_cov_14.710811	19.8	3.2	6.2	4.2	-2.6	0	0	0	transport.ABC transporters and multidrug resistance systems	"ATPDR4/PDR4 (PLEIOTROPIC DRUG RESISTANCE 4); ATPase, coupled to transmembrane movement of substances  Identical to Probable pleiotropic drug resistance protein 4 (PDR4) [Arabidopsis Thaliana] (GB:O81016); similar to ATPDR12/PDR12 (PLEIOTROPIC DRUG RESIST"
MSGI1_34828	NODE_12628_length_329_cov_22.957447	13.8	10.7	35.4	12.2	0	-1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_9008	NODE_1263_length_806_cov_35.052109	47.9	17.6	27.7	30.1	-1.4	0	0	0	cell wall	GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G56670.1); similar to Os01g0329900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042924.1); similar to hypothetical pro
MSGI1_9008	NODE_1263_length_806_cov_35.052109	47.9	17.6	27.7	30.1	-1.4	0	0	0	misc.GDSL-motif lipase	GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G56670.1); similar to Os01g0329900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042924.1); similar to hypothetical pro
MSGI1_9008	NODE_1263_length_806_cov_35.052109	47.9	17.6	27.7	30.1	-1.4	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_14996	NODE_12631_length_604_cov_15.072847	2.9	0.5	43.5	0.3	0	-7.2	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_61009	NODE_1265_length_206_cov_44.000000	0	0	94	31	0	-1.6	-7.6	-6	not assigned.unknown	not assigned.unknown
MSGI1_122500	NODE_12650_length_61_cov_138.131149	25.2	15.6	5.6	14.4	0	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_76343	NODE_12667_length_169_cov_15.461538	6.6	5	9.1	27.7	0	0	0	-2.5	amino acid metabolism.degradation.glutamate family.arginine	UREG (urease accessory protein G); metal ion binding / nucleotide binding Encodes a urease accessory protein which is essential for the activation of plant urease. similar to urease accessory protein G [Solanum tuberosum] (GB:CAC33003.1); contains InterP
MSGI1_84393	NODE_12672_length_155_cov_21.322580	7.8	12.6	0	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_13631	NODE_12680_length_641_cov_90.620903	76.9	101.2	0.1	0	0	0	9.6	7.7	not assigned.unknown	not assigned.unknown
MSGI1_87028	NODE_12681_length_151_cov_60.231789	48.7	23	18.6	17.8	0	0	1.4	0	cell wall.precursor synthesis.UGD	"UDP-glucose 6-dehydrogenase, putative  similar to ATUGD1/UGD1 (UDP-glucose dehydrogenase 1), UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G26570.1); similar to UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G29360.2); similar"
MSGI1_74826	NODE_12687_length_172_cov_22.750000	24.8	0.6	10.6	2.2	-5.4	0	0	0	RNA.regulation of transcription.unclassified	"aspartyl protease family protein  similar to pepsin A [Arabidopsis thaliana] (TAIR:AT5G07030.1); similar to Peptidase A1, pepsin [Medicago truncatula] (GB:ABE83791.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro"
MSGI1_122499	NODE_1269_length_61_cov_128.295074	40.7	50	12	54.8	0	2.2	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_103188	NODE_12697_length_130_cov_8.515385	0.1	0	14.5	11.5	0	0	-7.2	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_115388	NODE_12697_length_84_cov_81.035713	23.7	43.3	61.8	29.8	0	0	-1.4	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL	"4CL2 (4-coumarate:CoA ligase 2); 4-coumarate-CoA ligase encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order:  p-co"
MSGI1_92592	NODE_127_length_143_cov_7.356643	0	0	25.2	17	0	0	-5.7	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_11890	NODE_12707_length_693_cov_72.015877	38.7	20.3	10.9	9.9	0	0	1.8	0	cell wall	"SKU5 (skewed 5); copper ion binding encodes a protein of unknown function involved in directed root tip growth. It is a member of 19-member gene family and is distantly related structurally to the multiple-copper oxidases ascorbate oxidase and laccase, t"
MSGI1_5879	NODE_12709_length_980_cov_17.472448	16	41.4	8.9	10.4	1.4	0	0	2	cell wall	"APK1A (Arabidopsis protein kinase 1A); kinase Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues Identical to Protein kinase APK1A, chloroplast precursor (EC 2.7.11.1) (APK1A) [Arabidopsis Thaliana] (GB:Q06548;GB:Q9LNY0);"
MSGI1_5879	NODE_12709_length_980_cov_17.472448	16	41.4	8.9	10.4	1.4	0	0	2	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	"APK1A (Arabidopsis protein kinase 1A); kinase Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues Identical to Protein kinase APK1A, chloroplast precursor (EC 2.7.11.1) (APK1A) [Arabidopsis Thaliana] (GB:Q06548;GB:Q9LNY0);"
MSGI1_64919	NODE_12711_length_195_cov_7.205128	0.2	0.7	6.6	17.4	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_31303	NODE_12711_length_357_cov_10.949580	1.5	8.7	22.3	5.6	0	0	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_52995	NODE_12713_length_234_cov_119.444443	57	61.4	158.6	62	0	-1.4	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_24156	NODE_12713_length_438_cov_7.680365	2.6	4.4	12	23.1	0	0	0	-2.4	stress.abiotic.heat	"ATHSP101 (HEAT SHOCK PROTEIN 101); ATP binding / ATPase Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHs"
MSGI1_89701	NODE_12714_length_147_cov_57.673470	2.2	0.7	115.7	14.5	0	-3	-5.7	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_56716	NODE_12721_length_220_cov_71.500000	2.7	2.6	112.8	2.7	0	-5.4	-5.4	0	not assigned.unknown	not assigned.unknown
MSGI1_38448	NODE_12730_length_304_cov_17.667763	3.5	5.9	49.9	11.4	0	-2.1	-3.8	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	extracellular ligand-gated ion channel  similar to extracellular ligand-gated ion channel [Arabidopsis thaliana] (TAIR:AT1G50630.1); similar to AT3g20300/MQC12_5 [Medicago truncatula] (GB:ABD32643.1); contains InterPro domain Neurotransmitter-gated ion-ch
MSGI1_54008	NODE_12737_length_230_cov_9.330435	9.7	11.7	32.5	20.5	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_111143	NODE_12747_length_121_cov_11.826447	0	0	20.5	20.9	0	0	-5.4	-5.4	protein.degradation.ubiquitin	ubiquitin fusion degradation UFD1 family protein  similar to ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana] (TAIR:AT4G38930.2); similar to ubiquitin fusion-degradation protein-like [Solanum tuberosum] (GB:ABB29959.1); contains Int
MSGI1_54007	NODE_12748_length_230_cov_28.299999	18.3	9.6	52.6	43.2	0	0	-1.5	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_111850	NODE_12750_length_115_cov_79.869568	36.8	18.6	56.3	59	0	0	0	-1.7	gluconeogenesis.Malate DH	"PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2); malate dehydrogenase encodes a microbody NAD-dependent malate dehydrogenase Identical to Malate dehydrogenase, glyoxysomal precursor (EC 1.1.1.37) (mbNAD-MDH) [Arabidopsis Thaliana] (GB:Q9ZP05); similar to"
MSGI1_13630	NODE_1277_length_641_cov_58.853355	39.2	11.3	14.2	16.2	-1.8	0	1.5	0	protein.synthesis.mito/plastid ribosomal protein.unknown	"ribosomal protein L29 family protein  Identical to 50S ribosomal protein L29, chloroplast precursor (CL29) (RPL29) [Arabidopsis Thaliana] (GB:Q9FJP3); similar to 50S ribosomal protein L29, chloroplast precursor (CL29) (GB:Q9SWI6); contains InterPro domai"
MSGI1_73449	NODE_12774_length_175_cov_6.102857	2.5	4.1	17.7	7.4	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_19548	NODE_12779_length_514_cov_15.128405	29.7	15.5	7.2	12.1	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_115212	NODE_12783_length_86_cov_23.500000	16.4	23.2	13.6	37.6	0	1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_37343	NODE_12786_length_311_cov_9.681672	1	0.5	9.2	13.3	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_96452	NODE_1279_length_138_cov_1059.260864	0.5	1	176.3	3.5	0	-5.7	-8.5	0	not assigned.unknown	not assigned.unknown
MSGI1_107923	NODE_12793_length_125_cov_38.992001	16.6	22.3	21.9	3	0	-2.9	0	2.9	not assigned.unknown	not assigned.unknown
MSGI1_114344	NODE_12794_length_94_cov_25.925531	30.7	5.4	5.3	4.5	-2.5	0	2.5	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX2 (LIPOXYGENASE 2) Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection. Identical to Lipoxygenase, chloroplast precur"
MSGI1_23037	NODE_12798_length_456_cov_8.388158	0	0	22.7	6.8	0	0	-5.5	0	not assigned.unknown	not assigned.unknown
MSGI1_64917	NODE_12810_length_195_cov_9.553846	1.8	1.7	21.2	4.5	0	-2.2	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_25693	NODE_12817_length_418_cov_18.978470	0.3	0.8	23.7	32.2	0	0	-6.3	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_4580	NODE_12819_length_1103_cov_31.781506	37.7	0.3	11.5	1.3	-7	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_71133	NODE_12819_length_180_cov_10.022223	0	0	9.3	23.3	0	0	0	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_16670	NODE_12829_length_564_cov_58.533688	63	39.4	29.1	47.6	0	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_94149	NODE_12830_length_141_cov_26.716312	0	0	50	8.4	0	-2.6	-6.6	0	not assigned.unknown	not assigned.unknown
MSGI1_51138	NODE_12830_length_241_cov_30.568464	36.3	16.1	9.3	9.1	0	0	2	0	cell wall	"glycosyl hydrolase family 17 protein  similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT4G34480.1); similar to beta-1,3-glucanase-like protein [Olea europaea] (GB:AAK58515.1); contains InterPro domain X8; (InterPro:IPR012946)"
MSGI1_122491	NODE_12834_length_61_cov_26.278688	16.2	23.7	42.3	32.5	0	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_86304	NODE_12842_length_152_cov_9.717105	4.4	1.6	18.7	3.3	0	-2.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_30307	NODE_12844_length_366_cov_97.412567	67.9	45.5	49.7	97	0	1	0	-1.1	protein.synthesis.misc ribososomal protein	40S ribosomal protein S17 (RPS17A)  Identical to 40S ribosomal protein S17-1 (RPS17A) [Arabidopsis Thaliana] (GB:P49205;GB:Q9SJD0); similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT5G04800.4); similar to 40S ribosomal protein S
MSGI1_111849	NODE_12850_length_115_cov_17.808695	19.4	22.6	3.3	23.8	0	2.9	2.6	0	RNA.transcription	"NRPD2b (nuclear RNA polymerase D 2b); DNA binding / DNA-directed RNA polymerase Encodes a subunit of RNA polymerase IV (aka RNA polymerase D). NRPD2b is closely related to NRPD2a, but has lower levels of transcription and does not affect endogenous siRNA"
MSGI1_80160	NODE_12852_length_162_cov_13.586420	0.8	1.1	14.2	3.2	0	0	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_76341	NODE_12856_length_169_cov_14.662722	0	0.2	31.1	0.2	0	-7.3	-6	0	not assigned.unknown	not assigned.unknown
MSGI1_47517	NODE_12856_length_257_cov_14.233463	9.3	34.6	2.6	9.1	1.9	0	0	1.9	not assigned.unknown	not assigned.unknown
MSGI1_5471	NODE_12860_length_1013_cov_27.226061	14.5	10.6	29.4	7.9	0	-1.9	0	0	RNA.regulation of transcription.MADS box transcription factor family	AGL8 (AGAMOUS-LIKE 8); transcription factor MADS box gene negatively regulated  by APETALA1 Identical to Agamous-like MADS-box protein AGL8 (Floral homeotic protein AGL8) (Transcription factor FRUITFULL) (AGL8) [Arabidopsis Thaliana] (GB:Q38876); similar
MSGI1_5471	NODE_12860_length_1013_cov_27.226061	14.5	10.6	29.4	7.9	0	-1.9	0	0	development.unspecified	AGL8 (AGAMOUS-LIKE 8); transcription factor MADS box gene negatively regulated  by APETALA1 Identical to Agamous-like MADS-box protein AGL8 (Floral homeotic protein AGL8) (Transcription factor FRUITFULL) (AGL8) [Arabidopsis Thaliana] (GB:Q38876); similar
MSGI1_63135	NODE_12867_length_200_cov_4.580000	0.2	0.3	8.7	22.6	0	0	0	-6.2	not assigned.unknown	not assigned.unknown
MSGI1_35617	NODE_12870_length_323_cov_7.058824	9.3	14	0.1	0	0	0	0	4.8	amino acid metabolism.degradation.branched-chain group.valine	"ALDH6B2 (Aldehyde dehydrogenase 6B2); 3-chloroallyl aldehyde dehydrogenase Arabidopsis thaliana methylmalonate-semialdehyde dehydrogenase Identical to Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial precursor (EC 1.2.1.27) (MMSDH) (M"
MSGI1_87027	NODE_12871_length_151_cov_14.072847	14.6	12.7	0	0	0	0	4.9	4.7	not assigned.unknown	not assigned.unknown
MSGI1_71558	NODE_12873_length_179_cov_55.513966	30.7	24.7	9.1	29.1	0	1.7	1.8	0	amino acid metabolism.degradation.aspartate family.lysine	"ACAT2/EMB1276 (ACETOACETYL-COA THIOLASE 2, EMBRYO DEFECTIVE 1276); acetyl-CoA C-acetyltransferase  Identical to Acetyl-CoA acetyltransferase, cytosolic 1 (EC 2.3.1.9) (Cytosolic acetoacetyl-CoA thiolase 1) (Thiolase 1) (AAT1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_71558	NODE_12873_length_179_cov_55.513966	30.7	24.7	9.1	29.1	0	1.7	1.8	0	amino acid metabolism.degradation.aromatic aa.tryptophan	"ACAT2/EMB1276 (ACETOACETYL-COA THIOLASE 2, EMBRYO DEFECTIVE 1276); acetyl-CoA C-acetyltransferase  Identical to Acetyl-CoA acetyltransferase, cytosolic 1 (EC 2.3.1.9) (Cytosolic acetoacetyl-CoA thiolase 1) (Thiolase 1) (AAT1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_71558	NODE_12873_length_179_cov_55.513966	30.7	24.7	9.1	29.1	0	1.7	1.8	0	secondary metabolism.isoprenoids.mevalonate pathway.acetyl-CoA C-acyltransferase	"ACAT2/EMB1276 (ACETOACETYL-COA THIOLASE 2, EMBRYO DEFECTIVE 1276); acetyl-CoA C-acetyltransferase  Identical to Acetyl-CoA acetyltransferase, cytosolic 1 (EC 2.3.1.9) (Cytosolic acetoacetyl-CoA thiolase 1) (Thiolase 1) (AAT1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_83153	NODE_12878_length_157_cov_20.343948	21.2	10.7	2.7	4.8	0	0	3	0	protein.targeting.mitochondria	TIM13 (TIM13); protein translocase Encodes a putative small zinc finger-like protein (TIM13); nucleus-encoded gene whose product is found in the mitochondrial inner membrane space. Identical to Mitochondrial import inner membrane translocase subunit Tim1
MSGI1_1107	NODE_12880_length_1881_cov_23.131313	13.2	68.1	18.8	37.4	2.4	0	0	0	protein.degradation.ubiquitin.E2	"PHO2/UBC24 (PHOSPHATE 2); ubiquitin-protein ligase Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. similar to UBC23 (ubiquitin-conjugating enzyme"
MSGI1_105971	NODE_12887_length_127_cov_8.110236	0.4	4	12.9	16.3	0	0	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_77920	NODE_12888_length_166_cov_41.409637	41.2	14.5	0	0	-1.5	0	6.4	4.9	protein.degradation.serine protease	"SCPL29 (serine carboxypeptidase-like 29); serine carboxypeptidase  similar to SCPL26 (serine carboxypeptidase-like 26), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G35780.1); similar to Serine carboxypeptidase II-2 precursor (CP-MII.2) [Conta"
MSGI1_83152	NODE_129_length_157_cov_128.222931	10.2	59.2	11.6	3.7	2.5	0	0	4	not assigned.unknown	not assigned.unknown
MSGI1_105970	NODE_12906_length_127_cov_54.433071	51.1	23.2	1	2.1	0	0	5.7	3.5	cell wall.precursor synthesis.UGD	"UDP-glucose 6-dehydrogenase, putative  similar to ATUGD1/UGD1 (UDP-glucose dehydrogenase 1), UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G26570.1); similar to UDP-glucose 6-dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G39320.1)"
MSGI1_110961	NODE_12907_length_122_cov_80.795082	70.7	72.7	0	0	0	0	7.1	7.2	not assigned.unknown	not assigned.unknown
MSGI1_12968	NODE_12909_length_659_cov_24.268589	0.6	1.2	30.4	17.2	0	0	-5.7	-3.8	cell wall	"ATN1; kinase/ protein threonine/tyrosine kinase encodes a protein with kinase domains, including catalytic domains for serine/threonine as well as tyrosine kinases. a member of multi-gene family and is expressed in all tissues examined. similar to protei"
MSGI1_12968	NODE_12909_length_659_cov_24.268589	0.6	1.2	30.4	17.2	0	0	-5.7	-3.8	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_12968	NODE_12909_length_659_cov_24.268589	0.6	1.2	30.4	17.2	0	0	-5.7	-3.8	protein.postranslational modification	"ATN1; kinase/ protein threonine/tyrosine kinase encodes a protein with kinase domains, including catalytic domains for serine/threonine as well as tyrosine kinases. a member of multi-gene family and is expressed in all tissues examined. similar to protei"
MSGI1_6873	NODE_1292_length_917_cov_73.511452	51	24.9	20.8	32.6	0	0	1.3	0	tetrapyrrole synthesis.magnesium protoporphyrin IX methyltransferase	CHLM (MAGNESIUM-PROTOPORPHYRIN IX METHYLTRANSFERASE); magnesium protoporphyrin IX methyltransferase Encodes a protein with methyltransferase activity responsible for the methylation of magnesium protoporphyrin IX. Mutants defective in this gene are affec
MSGI1_41625	NODE_12920_length_286_cov_10.465035	2.9	3.4	26.4	8.4	0	0	-3.2	0	hormone metabolism.ethylene.induced-regulated-responsive-activated	"esterase, putative  similar to ACL (ACETONE-CYANOHYDRIN LYASE), hydrolase [Arabidopsis thaliana] (TAIR:AT2G23600.1); similar to salicylic acid-binding protein 2 [Nicotiana tabacum] (GB:AAR87711.1); contains InterPro domain Esterase/lipase/thioesterase; ("
MSGI1_41625	NODE_12920_length_286_cov_10.465035	2.9	3.4	26.4	8.4	0	0	-3.2	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"esterase, putative  similar to ACL (ACETONE-CYANOHYDRIN LYASE), hydrolase [Arabidopsis thaliana] (TAIR:AT2G23600.1); similar to salicylic acid-binding protein 2 [Nicotiana tabacum] (GB:AAR87711.1); contains InterPro domain Esterase/lipase/thioesterase; ("
MSGI1_91140	NODE_12936_length_145_cov_25.296553	5.6	13.6	32.1	13.9	0	0	-2.5	0	amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine.SAT	"AtSerat2;2 (SERINE ACETYLTRANSFERASE 1); serine O-acetyltransferase Encodes a mitochondrial serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. Identical to Serine acetyltransferase 3, m"
MSGI1_75833	NODE_12936_length_170_cov_23.770588	39.9	1.2	5.3	2.4	-5.1	0	2.9	0	RNA.regulation of transcription.putative transcription regulator	"pepsin A  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G54400.1); similar to Peptidase A1, pepsin [Medicago truncatula] (GB:ABE83791.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro"
MSGI1_64198	NODE_12937_length_197_cov_64.700508	125.2	53.3	20.7	39.8	-1.2	0	2.6	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L35 (RPL35A)  Identical to 60S ribosomal protein L35-1 (RPL35A) [Arabidopsis Thaliana] (GB:Q9SF53); similar to 60S ribosomal protein L35 (RPL35D) [Arabidopsis thaliana] (TAIR:AT5G02610.1); similar to 60S ribosomal protein L35 (GB:Q9M
MSGI1_87026	NODE_12947_length_151_cov_21.536425	22.5	102.4	424.6	552.7	2.2	0	-4.2	-2.4	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN3 (ASPARAGINE SYNTHETASE 3); asparagine synthase (glutamine-hydrolyzing) Encodes asparagine synthetase (ASN3). similar to ASN1 (DARK INDUCIBLE 6) [Arabidopsis thaliana] (TAIR:AT3G47340.1); similar to ASN2 (ASPARAGINE SYNTHETASE 2), asparagine synthase"
MSGI1_112571	NODE_12949_length_109_cov_51.119267	41.6	52.4	18.9	12.7	0	0	0	2	protein.postranslational modification	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G79570.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G35050.1); similar to flag-tagged protein kinase domain of putative
MSGI1_96451	NODE_1295_length_138_cov_12.507246	0.1	0.2	25.6	27.5	0	0	-8	-7.1	not assigned.unknown	not assigned.unknown
MSGI1_33440	NODE_1295_length_339_cov_180.132736	118.9	75.5	61.3	89.5	0	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_117244	NODE_12951_length_69_cov_91.942032	38.7	11	28.8	7.3	-1.8	-2	0	0	cell wall.cell wall proteins.AGPs	"FLA2 (FLA2) AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds Identical to Fasciclin-like arabinogalactan protein 2 precursor (FLA2) [Arabidopsis Thaliana] (GB:Q9SU13;GB:Q8L9T2;GB:Q9C5Q6); similar to FLA1 (F"
MSGI1_50010	NODE_12957_length_246_cov_71.048782	37.6	79.2	17.8	36.3	1.1	0	0	1.1	not assigned.unknown	not assigned.unknown
MSGI1_6347	NODE_12979_length_950_cov_18.903158	12.2	36.1	22.9	17	1.6	0	0	0	transport.amino acids	"AAP2 (AMINO ACID PERMEASE 2); amino acid permease member of AAAP family similar to AAP4 (amino acid permease 4), amino acid permease [Arabidopsis thaliana] (TAIR:AT5G63850.1); similar to AAP3 (amino acid permease 3), amino acid permease [Arabidopsis thal"
MSGI1_53783	NODE_12982_length_231_cov_14.917748	0	0	17.8	17.7	0	0	-5.2	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_122483	NODE_12984_length_61_cov_26.163935	1.9	4.7	30.3	5.8	0	-2.4	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_83753	NODE_12985_length_156_cov_14.583333	7	2.4	26.4	7.9	0	0	-1.9	0	transport.peptides and oligopeptides	"proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G52190.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32296.1); sim"
MSGI1_5798	NODE_12997_length_986_cov_17.043610	3	2.1	48.5	2.1	0	-4.5	-4	0	"metal handling.binding, chelation and storage"	"aminotransferase, putative encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment similar to aminotransferase-related [Arabidopsis thaliana] (TAIR:AT5G36160.1); similar to tyrosine aminotransferase [Glycine max] ("
MSGI1_47102	NODE_13006_length_259_cov_10.903475	1.6	4.1	20.9	1.7	0	-3.6	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_91139	NODE_13010_length_145_cov_25.117241	11.7	46.1	3.3	0.7	2	0	0	6	not assigned.unknown	not assigned.unknown
MSGI1_122477	NODE_13011_length_61_cov_71.180328	39.4	24.6	11.6	10.3	0	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_71556	NODE_13012_length_179_cov_117.972069	39.9	10.7	18.9	25.1	-1.9	0	0	0	Biodegradation of Xenobiotics.lactoylglutathione lyase	"ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase Encodes a glyoxalase I homolog ATGLX1. similar to lactoylglutathione lyase, putative / glyoxalase I, putative [Arabidopsis thaliana] (TAIR:AT1G67280.1); similar to Putative lactoylglutathione lyase"
MSGI1_71556	NODE_13012_length_179_cov_117.972069	39.9	10.7	18.9	25.1	-1.9	0	0	0	amino acid metabolism.degradation.aspartate family.threonine	"ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase Encodes a glyoxalase I homolog ATGLX1. similar to lactoylglutathione lyase, putative / glyoxalase I, putative [Arabidopsis thaliana] (TAIR:AT1G67280.1); similar to Putative lactoylglutathione lyase"
MSGI1_109894	NODE_13023_length_123_cov_54.902439	23.7	71	97.1	37.9	1.6	-1.4	-2	0	protein.degradation.ubiquitin.ubiquitin	"UBQ12 (UBIQUITIN 12) Ubiquitin-like gene, believed to be a pseudogene because of amino acid substitutions in 3 of the 5 ubiquitin repeats found in the UBQ12 gene product Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875"
MSGI1_122476	NODE_13027_length_61_cov_43.114754	93.4	27.3	7.2	34.6	-1.8	2.3	3.7	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase, putative  similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to LOX1 (Lipoxygenase 1), lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G55020.1); similar to lipoxygenase, putati"
MSGI1_2513	NODE_1304_length_1429_cov_64.578026	46.3	83.9	25.4	28.4	0	0	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_55923	NODE_13049_length_223_cov_22.636772	4.9	7.9	32.1	18.5	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_71131	NODE_13053_length_180_cov_31.188889	16.4	5.9	2.2	3.8	0	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_74824	NODE_13055_length_172_cov_110.912788	0	0	213.2	0.2	0	-10.1	-8.7	0	not assigned.unknown	not assigned.unknown
MSGI1_22193	NODE_13055_length_467_cov_91.803001	47.3	27	5.5	4.2	0	0	3.1	2.7	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2A.4 (HTA12) [Arabidopsis Thaliana] (GB:Q9LZ46); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT5G59870.1); similar to Histone H2A (GB:Q9M531); contains InterPro domain Histone-fold;"
MSGI1_99629	NODE_1307_length_134_cov_9.074627	22.9	4.2	21.4	13.4	-2.4	0	0	0	cell wall	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_99629	NODE_1307_length_134_cov_9.074627	22.9	4.2	21.4	13.4	-2.4	0	0	0	major CHO metabolism.degradation.starch.starch cleavage	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_99629	NODE_1307_length_134_cov_9.074627	22.9	4.2	21.4	13.4	-2.4	0	0	0	cell wall	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_99629	NODE_1307_length_134_cov_9.074627	22.9	4.2	21.4	13.4	-2.4	0	0	0	"misc.gluco-, galacto- and mannosidases"	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_93312	NODE_13083_length_142_cov_41.683098	43.2	89.6	151	49.7	1.1	-1.6	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_122474	NODE_13091_length_61_cov_94.278687	11.4	25.7	0.8	0	0	0	0	5.7	not assigned.unknown	not assigned.unknown
MSGI1_68103	NODE_13093_length_187_cov_46.561497	18.7	29.9	49.7	26.4	0	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_53515	NODE_13095_length_232_cov_15.512931	0	0	18.2	22.6	0	0	-5.2	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_11249	NODE_13096_length_715_cov_32.546852	36.7	22.4	51.6	14.4	0	-1.8	0	0	cell wall	"GATL9/LGT8 (Galacturonosyltransferase-like 9); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with  putative galacturonosyltransferase activity."
MSGI1_11249	NODE_13096_length_715_cov_32.546852	36.7	22.4	51.6	14.4	0	-1.8	0	0	misc.UDP glucosyl and glucoronyl transferases	"GATL9/LGT8 (Galacturonosyltransferase-like 9); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with  putative galacturonosyltransferase activity."
MSGI1_11335	NODE_1310_length_712_cov_138.757019	12.6	7.9	51.4	6.8	0	-2.9	-2	0	redox.ascorbate and glutathione.glutathione	"ATGPX6 (GLUTATHIONE PEROXIDASE 6); glutathione peroxidase Encodes glutathione peroxidase. Identical to Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial precursor (EC 1.11.1.12) (PHGPx) (AtGPX1) (GPX6) [Arabidopsis Thaliana] (GB"
MSGI1_116428	NODE_13105_length_75_cov_277.253326	108.3	56.2	147.2	17	0	-3.1	0	1.7	not assigned.unknown	not assigned.unknown
MSGI1_5897	NODE_13116_length_979_cov_76.195099	34.2	34.6	12.1	10.8	0	0	1.5	1.7	stress	"stress-inducible protein, putative  similar to stress-inducible protein, putative [Arabidopsis thaliana] (TAIR:AT1G12270.1); similar to stress-inducible protein, putative [Arabidopsis thaliana] (TAIR:AT1G62740.1); similar to Os02g0644100 [Oryza sativa (j"
MSGI1_113716	NODE_13117_length_100_cov_153.550003	63.2	80.5	47.6	152.6	0	1.7	0	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_44932	NODE_13118_length_269_cov_5.776952	29.9	5.1	6.8	11.7	-2.6	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_111661	NODE_13125_length_116_cov_25.594828	0	0	22.6	17.6	0	0	-5.5	-5.1	stress.abiotic.heat	"HSP91 (Heat shock protein 91) encodes high molecular weight heat shock protein 70 not a HSP90 homolog, mRNA is constitutively expressed but transiently induced after heat shock similar to heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT1G1166"
MSGI1_40336	NODE_13132_length_293_cov_64.546074	0.3	0.1	153.9	129.3	0	0	-9	-10.3	not assigned.unknown	not assigned.unknown
MSGI1_62742	NODE_13133_length_201_cov_49.119404	27.7	1.8	2.6	0.8	-3.9	0	3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_111142	NODE_13139_length_121_cov_127.404961	56.4	39.3	22.4	39.9	0	0	1.3	0	protein.postranslational modification	"T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative  Identical to T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) [Arabidopsis Thaliana] (GB:O04450); similar to chaperonin, putative [Arabidopsi"
MSGI1_1501	NODE_1314_length_1712_cov_56.133762	41.5	138.9	56.7	113.7	1.7	1	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL	"4CL2 (4-coumarate:CoA ligase 2); 4-coumarate-CoA ligase encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order:  p-co"
MSGI1_21436	NODE_13140_length_478_cov_16.441423	13.2	9	0	0	0	0	4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_70260	NODE_13143_length_182_cov_14.554945	11.5	13.3	28.9	7.2	0	-2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_61713	NODE_13145_length_204_cov_35.632355	39.3	26.5	3.5	3.8	0	0	3.5	2.8	protein.synthesis.misc ribososomal protein	ATRPS13A (RIBOSOMAL PROTEIN S13A); structural constituent of ribosome Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development Identical to 40S ribosomal protein S13-1 (RPS13A) [Arabidopsis Thaliana] (GB:P59223;GB:P49203;G
MSGI1_37821	NODE_13149_length_308_cov_62.090908	35.8	147.2	48.3	34.5	2	0	0	2.1	RNA.regulation of transcription.C3H zinc finger family	zinc finger (CCCH-type) family protein  similar to CZF1/ZFAR1 [Arabidopsis thaliana] (TAIR:AT2G40140.2); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro
MSGI1_21208	NODE_13159_length_481_cov_11.752599	68.4	18.9	17.1	24.5	-1.9	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_24154	NODE_13177_length_438_cov_64.910957	37.9	30.3	0	0	0	0	6.2	5.9	not assigned.unknown	not assigned.unknown
MSGI1_98053	NODE_13178_length_136_cov_150.669113	7.5	41.9	9.1	19.3	2.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_93309	NODE_13183_length_142_cov_24.500000	20.6	24.9	1.7	1.2	0	0	3.6	4.4	not assigned.unknown	not assigned.unknown
MSGI1_64196	NODE_13186_length_197_cov_64.573601	12.7	60	130.7	96.5	2.2	0	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_10927	NODE_1319_length_727_cov_14.431912	3	12.1	25.4	4.1	0	-2.6	-3.1	0	development.unspecified	senescence-associated protein-related  similar to MARD1 (MEDIATOR OF ABA-REGULATED DORMANCY 1) [Arabidopsis thaliana] (TAIR:AT3G63210.1); similar to Protein of unknown function DUF581 [Medicago truncatula] (GB:ABE87128.1); contains InterPro domain Protein
MSGI1_38755	NODE_13190_length_302_cov_18.725166	34.2	10.5	15.5	10.6	-1.7	0	0	0	"misc.oxidases - copper, flavone etc."	"ATPAO2 (POLYAMINE OXIDASE 2); amine oxidase  similar to ATPAO3 (POLYAMINE OXIDASE 3), oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G59050.1); similar to amine oxidase family protein [Musa acuminata] (GB:ABF69974.1); similar to H0215F08.3 [Oryza sativa"
MSGI1_105965	NODE_1320_length_127_cov_211.385834	50.6	23.7	12.9	24.5	0	0	2	0	cell wall.precursor synthesis.UGD	"UDP-glucose 6-dehydrogenase, putative  similar to ATUGD1/UGD1 (UDP-glucose dehydrogenase 1), UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G26570.1); similar to UDP-glucose 6-dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G39320.1)"
MSGI1_2456	NODE_13202_length_1441_cov_14.479528	13.5	48.7	17.5	43.2	1.9	1.3	0	0	misc.myrosinases-lectin-jacalin	jacalin lectin family protein  similar to jacalin lectin family protein [Arabidopsis thaliana] (TAIR:AT1G73040.1); similar to Agglutinin (CCA) (GB:P82859); similar to Os01g0775500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044410.1); similar to Os
MSGI1_35752	NODE_13203_length_322_cov_50.434784	31.8	28.1	5.8	9.8	0	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_92588	NODE_13205_length_143_cov_15.307693	6.5	3.1	43.8	3.7	0	-3.6	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_109892	NODE_13208_length_123_cov_58.186993	126.7	57.7	55.4	80.6	-1.1	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_48220	NODE_13209_length_254_cov_51.047245	110	83.5	47.4	46.4	0	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_77328	NODE_13210_length_167_cov_5.287425	0	0	11.7	8.1	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_41623	NODE_13219_length_286_cov_19.797203	1.3	0.3	35.9	17.5	0	0	-4.8	-5.9	not assigned.unknown	not assigned.unknown
MSGI1_13409	NODE_13222_length_647_cov_13.208655	0.7	0.9	19.9	26	0	0	-4.8	-4.9	misc.UDP glucosyl and glucoronyl transferases	"UGT73B1 (UDP-glucosyl transferase 73B1); UDP-glycosyltransferase/ abscisic acid glucosyltransferase  similar to UGT73B2, UDP-glucosyltransferase/ UDP-glycosyltransferase/ flavonol 3-O-glucosyltransferase [Arabidopsis thaliana] (TAIR:AT4G34135.1); similar"
MSGI1_76869	NODE_13225_length_168_cov_16.636906	23.8	10.6	14.4	1.3	0	-3.5	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	"similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44500.1); similar to Plant protein family, putative [Medicago truncatula] (GB:ABE79402.1); similar to H+-transporting two-sector ATPase, delta (OSCP) subunit; Hypothetical plant protein [Medic"
MSGI1_112294	NODE_13226_length_111_cov_57.891891	19.8	12.8	35.5	50.1	0	0	0	-2	not assigned.unknown	not assigned.unknown
MSGI1_40706	NODE_13236_length_291_cov_25.443298	2.8	6.6	64.8	6.5	0	-3.3	-4.5	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	RAP2.10 (related to AP2 10); DNA binding / transcription factor encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.10). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and
MSGI1_78965	NODE_1324_length_164_cov_24.823172	20.7	47.9	22.7	12.9	1.2	0	0	1.9	not assigned.unknown	not assigned.unknown
MSGI1_87025	NODE_13240_length_151_cov_23.701986	24.1	13.2	23.4	41.7	0	0	0	-1.7	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	"NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial, putative  similar to NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit (ISS) [Ostreococcus tauri] (GB:CAL57468.1); similar to NADH:ubiquinone oxidoreductase 51 kD subunit [Chlamydomonas rei"
MSGI1_68101	NODE_13241_length_187_cov_6.994652	1.5	5.1	1.8	18	0	3.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_26102	NODE_13243_length_413_cov_83.544792	62.1	33.5	27.7	33.3	0	0	1.2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L4/L1 (RPL4A)  Identical to 60S ribosomal protein L4-1 (L1) (RPL4A) [Arabidopsis Thaliana] (GB:Q9SF40); similar to 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] (TAIR:AT5G02870.1); similar to putative 60S ribosomal prot
MSGI1_50256	NODE_13244_length_245_cov_28.097960	18.6	21.6	65.7	24	0	-1.5	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_94144	NODE_13247_length_141_cov_79.765961	63.3	57.6	23.8	87.9	0	1.9	1.4	0	amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoglycerate dehydrogenase	"PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE); phosphoglycerate dehydrogenase encodes a 3-Phosphoglycerate dehydrogenase Identical to D-3-phosphoglycerate dehydrogenase, chloroplast precursor (EC 1.1.1.95) (3-PGDH) [Arabidopsis Thaliana] (GB:O04130); similar t"
MSGI1_80765	NODE_13253_length_161_cov_7.683230	3.8	5.1	30.4	7.2	0	-2.1	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_23036	NODE_13256_length_456_cov_12.228070	15.5	8.4	21	3.9	0	-2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_100516	NODE_13262_length_133_cov_4.037594	0.9	18.5	4.5	42.9	4.4	3.3	0	0	amino acid metabolism.synthesis.glutamate family.arginine.arginosuccinate synthase	"arginosuccinate synthase family  Identical to Argininosuccinate synthase, chloroplast precursor (EC 6.3.4.5) (Citrulline--aspartate ligase) [Arabidopsis Thaliana] (GB:Q9SZX3;GB:Q8VZ47); similar to Ar (GB:ABE78918.1); similar to Os12g0235800 [Oryza sativa"
MSGI1_27093	NODE_13267_length_401_cov_34.802994	63.5	52.8	27.2	43.4	0	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_72039	NODE_13269_length_178_cov_40.926968	59.9	23.7	35.8	70.4	-1.3	1	0	-1.6	protein.synthesis.misc ribososomal protein	40S ribosomal protein S30 (RPS30C)  Identical to 40S ribosomal protein S30 (RPS30C) [Arabidopsis Thaliana] (GB:P49689;GB:O82203;GB:Q9M0E4); similar to 40S ribosomal protein S30 (RPS30A) [Arabidopsis thaliana] (TAIR:AT2G19750.1); similar to 40S ribosomal p
MSGI1_114779	NODE_13274_length_90_cov_61.966667	0.2	0	100.4	1	0	-6.6	-9	0	not assigned.unknown	not assigned.unknown
MSGI1_55634	NODE_13285_length_224_cov_182.651779	210.7	94.4	277.4	267.5	-1.2	0	0	-1.5	protein.degradation.cysteine protease	"XCP2 (XYLEM CYSTEINE PEPTIDASE 2); cysteine-type peptidase/ peptidase  Identical to Xylem cysteine proteinase 2 precursor (EC 3.4.22.-) (AtXCP2) (XCP2) [Arabidopsis Thaliana] (GB:Q9LM66;GB:Q9SYQ2); similar to XCP1 (XYLEM CYSTEINE PEPTIDASE 1), cysteine-t"
MSGI1_122459	NODE_13302_length_61_cov_28.459017	51.1	69	16	15.2	0	0	1.7	2.2	stress.abiotic.heat	ATJ3 (Arabidopsis thaliana DnaJ homologue 3) homologous to the co-chaperon DNAJ protein from E coli Identical to Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) (ATJ3) [Arabidopsis Thaliana] (GB:Q94AW8;GB:O22663;GB:Q42530); similar to ATJ2 (Arabidopsis thaliana
MSGI1_87657	NODE_13313_length_150_cov_29.646667	18.5	20.6	71	34.5	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_22862	NODE_13315_length_458_cov_13.410480	4.5	5.1	24	9.4	0	0	-2.4	0	RNA.regulation of transcription.putative transcription regulator	transcription factor-related  similar to methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04830.1); similar to putative methionine sulfoxide reductase B [Oryza sativa (japonica cult
MSGI1_71554	NODE_13316_length_179_cov_28.631285	23.8	13.8	0.4	0	0	0	5.9	4.8	not assigned.unknown	not assigned.unknown
MSGI1_51421	NODE_13318_length_240_cov_13.029166	0.9	6	6.1	31.3	0	2.4	0	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_14385	NODE_1332_length_619_cov_7.334410	0.9	0.6	5.2	21.5	0	2	0	-5.2	protein.degradation	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G70550.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23340.2); similar to putative carboxyl-terminal proteinase [Gossypium hirsutum] (GB:AAK84952.2); contains InterPro domain
MSGI1_51689	NODE_13321_length_239_cov_53.644352	36.5	26.3	7.6	23.1	0	0	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_59718	NODE_13322_length_210_cov_10.400000	4.5	6.9	27.2	13.3	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_2289	NODE_13325_length_1480_cov_14.804729	22.6	2.6	8	2.8	-3.1	0	0	0	secondary metabolism.flavonoids.dihydroflavonols	UDP-glucoronosyl/UDP-glucosyl transferase family protein the glycosyltransferase (UGT72B1) is involved in metabolizing xenobiotica (chloroaniline and chlorophenole). Comparison between wild type and knock-out mutant demonstrates the central role of this g
MSGI1_100514	NODE_13338_length_133_cov_23.812031	8.8	12.1	30.8	21.5	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_43507	NODE_13342_length_276_cov_17.500000	5.4	20.9	0.3	0.3	0	0	0	6.1	not assigned.unknown	not assigned.unknown
MSGI1_92587	NODE_1337_length_143_cov_47.139858	0.6	6.8	49.8	5.4	0	-3.2	-6.4	0	not assigned.unknown	not assigned.unknown
MSGI1_34960	NODE_13370_length_328_cov_8.954268	10.7	34.7	26.2	8.9	1.7	0	0	2	"misc.oxidases - copper, flavone etc."	"copper amine oxidase, putative  similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G43670.1); similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT1G62810.1); similar to amine oxidase [Canavalia lineata] (GB:AAD"
MSGI1_5735	NODE_13371_length_991_cov_56.818367	20.4	47.8	23.5	42.7	1.2	0	0	0	RNA.regulation of transcription.GRAS transcription factor family	scarecrow transcription factor family protein  similar to scarecrow-like transcription factor 6 (SCL6) [Arabidopsis thaliana] (TAIR:AT4G00150.1); similar to SCARECROW-like protein [Brassica napus] (GB:AAT75161.1); contains InterPro domain GRAS transcripti
MSGI1_5735	NODE_13371_length_991_cov_56.818367	20.4	47.8	23.5	42.7	1.2	0	0	0	development.unspecified	scarecrow transcription factor family protein  similar to scarecrow-like transcription factor 6 (SCL6) [Arabidopsis thaliana] (TAIR:AT4G00150.1); similar to SCARECROW-like protein [Brassica napus] (GB:AAT75161.1); contains InterPro domain GRAS transcripti
MSGI1_31871	NODE_13376_length_352_cov_11.684659	3.6	3.2	30.5	4.1	0	-2.9	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_112425	NODE_13377_length_110_cov_13.754545	0.1	0.1	14	23.6	0	0	-7.1	-7.9	protein.targeting.mitochondria	"MPPBETA; metalloendopeptidase  Identical to Probable mitochondrial-processing peptidase subunit beta, mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) [Arabidopsis Thaliana] (GB:Q42290;GB:Q9SGA7); similar to mitochondrial processing peptidase alpha subu"
MSGI1_32687	NODE_13378_length_345_cov_27.866667	35.3	0.2	7.2	1.2	-7.5	0	2.3	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_32687	NODE_13378_length_345_cov_27.866667	35.3	0.2	7.2	1.2	-7.5	0	2.3	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to ATLTL1/LTL1 (LI-TOLERANT LIPASE 1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT3G04290.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipo"
MSGI1_90413	NODE_13379_length_146_cov_14.027397	0	0	27.9	32.5	0	0	-5.8	-6	not assigned.unknown	not assigned.unknown
MSGI1_75346	NODE_13382_length_171_cov_23.929825	10.8	16.6	18.9	3.5	0	-2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_29920	NODE_13383_length_370_cov_10.518919	3.2	4.6	20.4	5.1	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_34827	NODE_13384_length_329_cov_13.395137	18.6	0.8	4.1	0.8	-4.5	0	0	0	hormone metabolism.ethylene.synthesis-degradation	"oxidoreductase, 2OG-Fe(II) oxygenase family protein encodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus. similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G49390.1); similar to et"
MSGI1_53514	NODE_13392_length_232_cov_12.172414	1	2.5	27.5	0.2	0	-7.1	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_88313	NODE_13404_length_149_cov_10.543624	4.8	30.8	18.7	20.1	2.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_117594	NODE_13404_length_66_cov_252.196976	91.8	165.5	0.4	0	0	0	7.8	8.4	not assigned.unknown	not assigned.unknown
MSGI1_7810	NODE_13405_length_865_cov_11.033526	1.2	2.1	7.9	29.7	0	1.9	0	-3.8	not assigned.unknown	not assigned.unknown
MSGI1_100513	NODE_13409_length_133_cov_10.586466	0.4	0.3	25.3	5.7	0	-2.2	-6	0	not assigned.unknown	not assigned.unknown
MSGI1_27682	NODE_13409_length_394_cov_51.116753	42.6	13.3	39.6	13	-1.7	-1.6	0	0	development.late embryogenesis abundant	late embryogenesis abundant family protein / LEA family protein  similar to LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) [Arabidopsis thaliana] (TAIR:AT1G01470.1); similar to Os03g0843300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051862.1); similar to
MSGI1_71553	NODE_13412_length_179_cov_7.469274	1.7	8.7	16.4	6.7	0	0	-3.3	0	cell wall.degradation	peptidoglycan-binding LysM domain-containing protein  similar to peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G25433.1); similar to Os10g0524300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065106.1); similar
MSGI1_39652	NODE_13413_length_297_cov_15.057240	42.1	20.9	16.1	14.4	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_87024	NODE_13416_length_151_cov_7.788079	8.4	18.1	0.5	1.2	0	0	0	3.9	not assigned.unknown	not assigned.unknown
MSGI1_58816	NODE_13417_length_213_cov_54.521126	10.8	23.4	10.8	32.7	0	1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_116733	NODE_13422_length_73_cov_35.260273	20.4	1.3	8	5.3	-4	0	0	0	cell wall.modification	"ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thalian"
MSGI1_53215	NODE_13425_length_233_cov_17.575108	22.6	3.4	3.3	1.2	-2.7	0	2.8	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_53215	NODE_13425_length_233_cov_17.575108	22.6	3.4	3.3	1.2	-2.7	0	2.8	0	"misc.oxidases - copper, flavone etc."	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arab"
MSGI1_97196	NODE_13431_length_137_cov_5.649635	3.4	24.1	9.3	3.5	2.8	0	0	2.8	not assigned.unknown	not assigned.unknown
MSGI1_40884	NODE_13435_length_290_cov_73.982758	52.4	40.1	25.2	52.7	0	1.1	0	0	protein.synthesis.misc ribososomal protein	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein  similar to ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] (TAIR:AT4G22380.1); similar to Os03g0241200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049514.1); simi
MSGI1_54563	NODE_1344_length_228_cov_144.407898	131.1	31.7	35.1	52	-2	0	1.9	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"RPL4 (ribosomal protein L4); structural constituent of ribosome encodes a plastid ribosomal protein L4 Identical to 50S ribosomal protein L4, chloroplast precursor (CL4) (R-protein L4) (RPL4) [Arabidopsis Thaliana] (GB:O50061;GB:Q8LF27;GB:Q8VZS1;GB:Q9LNV"
MSGI1_31754	NODE_1346_length_353_cov_69.277618	46.5	25.9	70.1	17.8	0	-2	0	0	protein.postranslational modification	"CIPK3 (CBL-INTERACTING PROTEIN KINASE 3); kinase/ protein kinase encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing see"
MSGI1_97194	NODE_13487_length_137_cov_44.474453	19.3	57.4	40	59	1.6	0	0	0	transport.amino acids	amino acid transporter family protein  similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT5G38820.1); similar to Os06g0633800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058132.1); similar to putative N system amino ac
MSGI1_28612	NODE_13489_length_384_cov_9.507812	2	1.5	29.4	1.3	0	-4.5	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_122449	NODE_13497_length_61_cov_19.524590	0	0	4.4	24.7	0	2.5	0	-5.6	not assigned.unknown	not assigned.unknown
MSGI1_87023	NODE_13498_length_151_cov_55.622517	10.5	5.7	0.2	3.8	0	0	5.7	0	PS.calvin cyle.rubisco interacting	"CPN60A (chloroplast / 60 kDa chaperonin alpha subunit); ATP binding / protein binding / unfolded protein binding Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding.  Mutants display aberrant chloroplast and embryo development."
MSGI1_67250	NODE_13499_length_189_cov_12.973545	0	0	11.2	0.2	0	-5.8	-4.5	0	cell wall	"IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE); UDP-glycosyltransferase/ transferase, transferring glycosyl groups UDP-glucose:indole-3-acetate beta-D-glucosyltransferase similar to UGT1 (UDP-glucosyl transferase 75B1), UDP-glycosyltransferase/ tran"
MSGI1_122447	NODE_13505_length_61_cov_42.459015	10.6	13.1	0	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_31299	NODE_13523_length_357_cov_70.557426	87	67.9	4.6	3	0	0	4.2	4.5	signalling.light	PHOT1 (phototropin 1); kinase Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 me
MSGI1_31299	NODE_13523_length_357_cov_70.557426	87	67.9	4.6	3	0	0	4.2	4.5	protein.postranslational modification	PHOT1 (phototropin 1); kinase Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 me
MSGI1_122443	NODE_13524_length_61_cov_19.950819	11.6	4.9	18.4	26.8	0	0	0	-2.5	not assigned.unknown	not assigned.unknown
MSGI1_122442	NODE_13526_length_61_cov_140.327866	75.3	43.5	8.4	24.7	0	0	3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_53512	NODE_13527_length_232_cov_13.228448	15.7	34.7	3.5	4.1	0	0	0	3.1	not assigned.unknown	not assigned.unknown
MSGI1_66406	NODE_13530_length_191_cov_10.549738	15.5	13.6	0	0	0	0	5	4.8	hormone metabolism.auxin.signal transduction	PIN4 (PIN-FORMED 4); auxin:hydrogen symporter/ transporter Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems.  It is involved in the maintenance of embryonic auxin gradients.  A role for AtPIN4 in generatin
MSGI1_5878	NODE_13531_length_980_cov_36.085712	27.3	54.1	8.6	12.6	0	0	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_115512	NODE_13535_length_83_cov_11.397591	8.2	12.8	0	0.3	0	0	0	5.4	not assigned.unknown	not assigned.unknown
MSGI1_68907	NODE_13550_length_185_cov_7.183784	0.8	2.7	20.1	3.3	0	-2.6	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_122440	NODE_13557_length_61_cov_121.016396	26.9	51.1	104.9	107.5	0	0	-2	-1.1	protein.degradation.cysteine protease	"cathepsin B-like cysteine protease, putative  similar to cathepsin B-like cysteine protease, putative [Arabidopsis thaliana] (TAIR:AT1G02305.1); similar to Peptidase C1A, papain; Somatotropin hormone [Medicago truncatula] (GB:ABD32839.1); contains InterP"
MSGI1_4746	NODE_1356_length_1085_cov_103.164978	52.3	80.9	118.9	82.8	0	0	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_51136	NODE_13560_length_241_cov_5.481328	0.5	0.4	8.8	10.4	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_116204	NODE_13566_length_77_cov_43.519482	13.5	34.7	170.5	54.7	0	-1.6	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_22723	NODE_13567_length_460_cov_55.549999	34.5	30.2	7	7.3	0	0	2.3	2	not assigned.unknown	not assigned.unknown
MSGI1_30777	NODE_13568_length_362_cov_5.867404	0.1	0	14.4	0	0	-4.8	-7.2	0	not assigned.unknown	not assigned.unknown
MSGI1_85636	NODE_13573_length_153_cov_28.882353	0.8	1.2	32.3	1.4	0	-4.5	-5.3	0	not assigned.unknown	not assigned.unknown
MSGI1_115997	NODE_13575_length_79_cov_71.898735	53.5	27.4	14.6	25.9	0	0	1.9	0	stress.abiotic.heat	BIP (LUMINAL BINDING PROTEIN); ATP binding luminal binding protein (BiP) Identical to Luminal-binding protein 2 precursor (BiP2) (AtBP2) [Arabidopsis Thaliana] (GB:Q39043;GB:Q39042); Identical to Luminal-binding protein 1 precursor (BiP1) (AtBP1) [Arabido
MSGI1_81327	NODE_13580_length_160_cov_170.318756	85.4	44.9	34.5	56.3	0	0	1.3	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S13 (RPS13A)  Identical to 40S ribosomal protein S13-1 (RPS13A) [Arabidopsis Thaliana] (GB:P59223;GB:P49203;GB:Q93V69;GB:Q93WJ4;GB:Q9LZY6); Identical to 40S ribosomal protein S13-2 (RPS13B) [Arabidopsis Thaliana] (GB:P59224;GB:O8131
MSGI1_12303	NODE_13581_length_680_cov_16.097059	1.7	20.5	2.4	10	3.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_83750	NODE_13588_length_156_cov_12.961538	7.9	29	19.9	24.7	1.9	0	0	0	transport.ABC transporters and multidrug resistance systems	"ATPDR7/PDR7 (PLEIOTROPIC DRUG RESISTANCE 7); ATPase, coupled to transmembrane movement of substances  Identical to Probable pleiotropic drug resistance protein 7 (PDR7) [Arabidopsis Thaliana] (GB:Q7PC86;GB:Q9XI48); similar to ATPDR12/PDR12 (PLEIOTROPIC D"
MSGI1_113715	NODE_13589_length_100_cov_90.690002	67.3	33.4	23.3	19.1	-1	0	1.5	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	"ELI3-2 (ELICITOR-ACTIVATED GENE 3) Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria.  Though similar to mannitol dehydrogenases, this enzyme does not have"
MSGI1_5864	NODE_13593_length_981_cov_25.382263	33.4	0.8	4.5	1.7	-5.4	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_8276	NODE_13598_length_843_cov_15.629893	10.2	34.2	13.9	28.3	1.7	0	0	0	hormone metabolism.auxin.signal transduction	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_8276	NODE_13598_length_843_cov_15.629893	10.2	34.2	13.9	28.3	1.7	0	0	0	transport.misc	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_8276	NODE_13598_length_843_cov_15.629893	10.2	34.2	13.9	28.3	1.7	0	0	0	transport.amino acids	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_62739	NODE_13612_length_201_cov_142.114426	80.7	44.4	31.5	7.5	0	-2.1	1.4	2.6	not assigned.unknown	not assigned.unknown
MSGI1_92583	NODE_13619_length_143_cov_49.377621	18	32	0	0	0	0	5.2	6	not assigned.unknown	not assigned.unknown
MSGI1_17833	NODE_13619_length_541_cov_23.813309	14.2	19	39	32.7	0	0	-1.5	0	protein.targeting.chloroplast	"TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55); oxidoreductase  similar to ACD1 (ACCELERATED CELL DEATH 1, PHEOPHORBIDE A OXYGENASE) [Arabidopsis thaliana] (TAIR:AT3G44880.1); similar to Rieske iron-sulfur protein Tic55 [Pisum sativ"
MSGI1_25404	NODE_13626_length_422_cov_20.265404	25	14.5	3.7	7.1	0	0	2.8	0	hormone metabolism.jasmonate.synthesis-degradation.allene oxidase cyclase	"AOC4 (ALLENE OXIDE CYCLASE 4) Encodes allene oxide cyclase.  One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is reduced during senescence, a process that involves"
MSGI1_53781	NODE_13629_length_231_cov_35.930737	50.6	39	13.5	12.9	0	0	1.9	1.6	not assigned.unknown	not assigned.unknown
MSGI1_25199	NODE_1363_length_425_cov_160.948242	66.3	26.9	13.6	8.1	-1.3	0	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_69808	NODE_13638_length_183_cov_5.049181	0.1	0.3	8.7	12.5	0	0	0	-5.4	protein.aa activation.lysine-tRNA ligase	"lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative  Identical to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) [Arabidopsis Thaliana] (GB:Q9ZPI1); similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Ar"
MSGI1_113939	NODE_1364_length_98_cov_104.367348	37	118.2	32.8	104.2	1.7	1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_87653	NODE_13641_length_150_cov_10.906667	5.6	10.9	61.7	13.8	0	-2.2	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_29252	NODE_13647_length_377_cov_8.938993	5.2	2.2	18.9	2.2	0	-3.1	0	0	signalling.receptor kinases.legume-lectin	"lectin protein kinase family protein  similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G53810.1); similar to RLK (RECEPTOR LECTIN KINASE), kinase [Arabidopsis thaliana] (TAIR:AT2G37710.1); similar to lectin protein kinase, putat"
MSGI1_9080	NODE_13649_length_802_cov_15.300499	21.4	27.7	0.1	0	0	0	7.7	5.8	cell wall	"SCPL45; serine carboxypeptidase  similar to SCPL46 (serine carboxypeptidase-like 46), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G33530.1); similar to Os04g0396800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052663.1); similar to Seri"
MSGI1_9080	NODE_13649_length_802_cov_15.300499	21.4	27.7	0.1	0	0	0	7.7	5.8	protein.degradation.serine protease	"SCPL45; serine carboxypeptidase  similar to SCPL46 (serine carboxypeptidase-like 46), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G33530.1); similar to Os04g0396800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052663.1); similar to Seri"
MSGI1_98048	NODE_1365_length_136_cov_448.779419	322.4	264.7	146.7	257.8	0	0	1.1	0	stress.abiotic.heat	"HSP81-2 (EARLY-RESPONSIVE TO DEHYDRATION 8); ATP binding a member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl."
MSGI1_23960	NODE_13651_length_441_cov_34.079365	16.9	7	2.6	3.2	0	0	2.7	0	cell wall	glycosyl hydrolase family 79 N-terminal domain-containing protein  Identical to Heparanase-like protein 2 precursor (EC 3.2.-.-) [Arabidopsis Thaliana] (GB:Q8L608;GB:Q9FLK8); similar to glycosyl hydrolase family 79 N-terminal domain-containing protein [A
MSGI1_81874	NODE_13653_length_159_cov_112.113205	52	29.7	69.2	20.1	0	-1.8	0	0	cell wall.precursor synthesis.UXS	"UXS6; catalytic  similar to UXS5 (UDP-Xyl synthase 5), catalytic [Arabidopsis thaliana] (TAIR:AT3G46440.2); similar to UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE) [Arabidopsis thaliana] (TAIR:AT5G59290.2); similar to UDP-glucuronic acid decarboxylase 3 [Pop"
MSGI1_73444	NODE_13659_length_175_cov_12.891429	2.3	4.9	31.7	3.8	0	-3.1	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_72984	NODE_1366_length_176_cov_462.352264	238.6	68.1	101.4	182.3	-1.8	0	1.2	-1.4	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase, putative  similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to LOX1 (Lipoxygenase 1), lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G55020.1); similar to lipoxygenase, putati"
MSGI1_53214	NODE_13669_length_233_cov_109.459229	130.1	239.7	54.2	83.4	0	0	1.3	1.5	not assigned.unknown	not assigned.unknown
MSGI1_15241	NODE_13672_length_597_cov_69.892799	34.5	14.7	7.6	7.6	0	0	2.2	0	cell wall	GRF12 (GENERAL REGULATORY FACTOR 12); protein phosphorylated amino acid binding 14-3-3 protein GF14iota (grf12) Identical to 14-3-3-like protein GF14 iota (General regulatory factor 12) (GRF12) [Arabidopsis Thaliana] (GB:Q9C5W6;GB:Q9FZD3); similar to GRF
MSGI1_15241	NODE_13672_length_597_cov_69.892799	34.5	14.7	7.6	7.6	0	0	2.2	0	signalling.14-3-3 proteins	GRF12 (GENERAL REGULATORY FACTOR 12); protein phosphorylated amino acid binding 14-3-3 protein GF14iota (grf12) Identical to 14-3-3-like protein GF14 iota (General regulatory factor 12) (GRF12) [Arabidopsis Thaliana] (GB:Q9C5W6;GB:Q9FZD3); similar to GRF
MSGI1_62064	NODE_13678_length_203_cov_11.118227	15.1	11.9	0.4	0	0	0	5.2	4.6	not assigned.unknown	not assigned.unknown
MSGI1_33438	NODE_1368_length_339_cov_98.265488	122.2	53.1	82.9	120.7	-1.2	0	0	-1.2	protein.synthesis.mito/plastid ribosomal protein.plastid	"ribosomal protein L19 family protein  Identical to 50S ribosomal protein L19-2, chloroplast precursor [Arabidopsis Thaliana] (GB:Q8RXX5;GB:Q8LBV7;GB:Q9LVU0); similar to ribosomal protein L19 family protein [Arabidopsis thaliana] (TAIR:AT4G17560.1); simil"
MSGI1_76335	NODE_13686_length_169_cov_12.289941	3.9	6.1	19	30.3	0	0	0	-2.3	not assigned.unknown	not assigned.unknown
MSGI1_3412	NODE_13690_length_1261_cov_22.117367	23.9	4.3	0.5	0.6	-2.5	0	5.6	0	not assigned.unknown	not assigned.unknown
MSGI1_68510	NODE_13699_length_186_cov_7.069892	7.6	10.5	23.7	2.6	0	-3.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_53780	NODE_13702_length_231_cov_11.649351	5	13.9	0.2	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_115003	NODE_13705_length_88_cov_48.397728	18.2	20.2	0	0	0	0	5.2	5.3	redox.ascorbate and glutathione	"ATMDAR1 (MONODEHYDROASCORBATE REDUCTASE 1); monodehydroascorbate reductase (NADH) Encodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2 Identical to Probable monodehydroascorbate reduct"
MSGI1_117879	NODE_13706_length_64_cov_164.437500	12.9	46.2	31.5	13.7	1.8	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_72983	NODE_13709_length_176_cov_87.272728	17.3	43.3	37.8	28.2	1.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_34264	NODE_13713_length_333_cov_39.021023	34.5	18.5	8.5	9.6	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_25403	NODE_13716_length_422_cov_23.554502	34	4.4	2.2	2.7	-2.9	0	3.9	0	misc.cytochrome P450	"CYP82G1 (cytochrome P450, family 82, subfamily G, polypeptide 1); oxygen binding member of CYP82G similar to CYP82C4 (cytochrome P450, family 82, subfamily C, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31940.1); similar to CYP82C1p ["
MSGI1_112796	NODE_13717_length_107_cov_408.467285	80.8	170.5	80.7	123.2	1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_56713	NODE_13729_length_220_cov_13.777273	12.7	17.2	1	3.2	0	0	3.7	0	RNA.regulation of transcription.unclassified	RPT2 (ROOT PHOTOTROPISM 2); protein binding light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis Identical to Root phototropism protein 2 (RPT2) [Arabidopsis Thaliana] (GB:Q682S0;GB:O04343;GB:O04344;G
MSGI1_56713	NODE_13729_length_220_cov_13.777273	12.7	17.2	1	3.2	0	0	3.7	0	signalling.light	RPT2 (ROOT PHOTOTROPISM 2); protein binding light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis Identical to Root phototropism protein 2 (RPT2) [Arabidopsis Thaliana] (GB:Q682S0;GB:O04343;GB:O04344;G
MSGI1_47099	NODE_13732_length_259_cov_11.617761	0	0	31	30	0	0	-6	-5.9	not assigned.unknown	not assigned.unknown
MSGI1_62063	NODE_13733_length_203_cov_6.847291	12.4	0.8	8.3	0.8	-4	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_82498	NODE_13738_length_158_cov_8.677216	0.9	1.9	19.1	1.6	0	-3.6	-4.4	0	signalling.receptor kinases.S-locus glycoprotein like	ARK3 (Arabidopsis Receptor Kinase 3); kinase encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transi
MSGI1_66819	NODE_13741_length_190_cov_43.826317	26.8	23.1	0	0	0	0	5.7	5.5	not assigned.unknown	not assigned.unknown
MSGI1_68905	NODE_13758_length_185_cov_15.902702	31.1	13.7	3.2	1	0	0	3.3	3.8	secondary metabolism.N misc.alkaloid-like	"tropinone reductase, putative / tropine dehydrogenase, putative  Identical to Putative tropinone reductase homolog At1g07440 (EC 1.1.1.-) [Arabidopsis Thaliana] (GB:Q9ASX2;GB:Q9LNW5); similar to short-chain dehydrogenase/reductase (SDR) family protein [A"
MSGI1_68905	NODE_13758_length_185_cov_15.902702	31.1	13.7	3.2	1	0	0	3.3	3.8	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"tropinone reductase, putative / tropine dehydrogenase, putative  Identical to Putative tropinone reductase homolog At1g07440 (EC 1.1.1.-) [Arabidopsis Thaliana] (GB:Q9ASX2;GB:Q9LNW5); similar to short-chain dehydrogenase/reductase (SDR) family protein [A"
MSGI1_35070	NODE_13761_length_327_cov_11.562691	0.5	3.4	30.8	1.5	0	-4.4	-5.9	0	not assigned.unknown	not assigned.unknown
MSGI1_61005	NODE_13766_length_206_cov_11.504854	11.6	22.4	0.2	0	0	0	5.9	5.5	not assigned.unknown	not assigned.unknown
MSGI1_61340	NODE_13769_length_205_cov_12.380487	5.7	13.9	1.8	0.9	0	0	0	3.9	not assigned.unknown	not assigned.unknown
MSGI1_54289	NODE_13777_length_229_cov_9.720524	11.2	18.9	0.2	0	0	0	5.8	5.2	development.unspecified	REV (REVOLUTA); DNA binding / lipid binding / transcription factor REVOLUTA regulates meristem initiation at lateral positions. a member of a small homeodomain-leucine zipper family. Has overlapping functions with PHAVOLUTA and PHABULOSA. similar to PHV
MSGI1_54289	NODE_13777_length_229_cov_9.720524	11.2	18.9	0.2	0	0	0	5.8	5.2	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	REV (REVOLUTA); DNA binding / lipid binding / transcription factor REVOLUTA regulates meristem initiation at lateral positions. a member of a small homeodomain-leucine zipper family. Has overlapping functions with PHAVOLUTA and PHABULOSA. similar to PHV
MSGI1_113358	NODE_13788_length_103_cov_12.563107	5.7	12.6	23.2	60.5	0	1.4	0	-2.3	protein.degradation	LOL3 (LSD ONE LIKE 3); caspase/ cysteine-type endopeptidase Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain similar to latex-abund
MSGI1_72541	NODE_13791_length_177_cov_61.677967	21.5	27.8	1	0.2	0	0	4.4	7.1	not assigned.unknown	not assigned.unknown
MSGI1_85039	NODE_13793_length_154_cov_13.818182	15.9	6.2	1.8	3.5	0	0	3.1	0	cell wall	"glycosyl hydrolase family 17 protein  Identical to Putative glucan endo-1,3-beta-glucosidase 7 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 7) ((1->3)-beta-glucanase 7) (Beta- 1,3-endoglucanase 7) (Beta-1,3-glucanase 7) [Arabidopsis Thaliana"
MSGI1_115211	NODE_1380_length_86_cov_59.674419	47.9	70.1	116.7	48.3	0	-1.3	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_29919	NODE_13828_length_370_cov_69.664864	17.7	17.9	47.3	24.5	0	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_92582	NODE_13830_length_143_cov_5.286713	7.7	1.8	14.5	14.8	0	0	0	-3	not assigned.unknown	not assigned.unknown
MSGI1_89017	NODE_13833_length_148_cov_15.783784	23.7	1.8	2.8	1.4	-3.7	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_38623	NODE_13833_length_303_cov_11.042904	2.9	5.5	4.1	36.7	0	3.2	0	-2.7	RNA.RNA binding	"HYL1 (HYPONASTIC LEAVES 1) Encodes a nuclear dsRNA binding protein. Involved in mRNA cleavage. The mutant is characterized by shorter stature, delayed flowering, leaf hyponasty, reduced fertility, decreased rate of root growth, and an altered root gravit"
MSGI1_59715	NODE_13836_length_210_cov_7.395238	8.6	16.9	0.4	0	0	0	0	5.1	signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase	"1-phosphatidylinositol-4-phosphate 5-kinase, putative / PIP kinase, putative / PtdIns(4)P-5-kinase, putative / diphosphoinositide kinase, putative  Identical to Phosphatidylinositol-4-phosphate 5-kinase 2 (EC 2.7.1.68) (AtPIP5K2) (1-phosphatidylinositol-"
MSGI1_27959	NODE_13850_length_391_cov_16.938620	6.1	22.2	33.3	3.3	0	-3.3	-2.4	2.8	not assigned.unknown	not assigned.unknown
MSGI1_89697	NODE_13855_length_147_cov_48.714287	22.9	46.4	3.7	20	0	2.4	2.6	0	protein.synthesis.initiation	"ZLL (ZWILLE) Translation initiation factor. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Identical t"
MSGI1_55919	NODE_1386_length_223_cov_198.609863	125.6	43.4	100.5	84.9	-1.5	0	0	0	protein.synthesis.mito/plastid ribosomal protein.unknown	"RPL12-C (RIBOSOMAL PROTEIN L12-C); structural constituent of ribosome 50S ribosomal protein L12-C Identical to 50S ribosomal protein L12-3, chloroplast precursor (CL12-C) (RPL12C) [Arabidopsis Thaliana] (GB:P36212;GB:Q9LK92); similar to RPL12-A (RIBOSOMA"
MSGI1_122427	NODE_13872_length_61_cov_86.098358	72.7	89.7	118.1	49	0	-1.3	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	PAL1 (PHE AMMONIA LYASE 1); phenylalanine ammonia-lyase encodes a protein similar to phenylalanine ammonia-lyase Identical to Phenylalanine ammonia-lyase 1 (EC 4.3.1.5) (PAL1) [Arabidopsis Thaliana] (GB:P35510;GB:Q94AN1;GB:Q9ZQD6); similar to PAL2 (pheny
MSGI1_2401	NODE_13885_length_1452_cov_14.847796	12.1	10.5	29.2	8.6	0	-1.8	0	0	transport.calcium	ATTPC1 (TWO-PORE CHANNEL 1); calcium channel/ voltage-gated calcium channel Encodes a depolarization-activated Ca(2+) channel. Anti-sense experiments with this gene as well as Sucrose-H(+) symporters and complementation of yeast sucrose uptake mutant cch
MSGI1_75341	NODE_1390_length_171_cov_21.847954	150.9	87.4	39.2	55.4	0	0	1.9	0	RNA.regulation of transcription.GRAS transcription factor family	GAI (GA INSENSITIVE); transcription factor Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell pro
MSGI1_75341	NODE_1390_length_171_cov_21.847954	150.9	87.4	39.2	55.4	0	0	1.9	0	hormone metabolism.gibberelin.induced-regulated-responsive-activated	GAI (GA INSENSITIVE); transcription factor Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell pro
MSGI1_6323	NODE_13900_length_951_cov_13.968454	18.7	4.5	3.2	1.7	0	0	2.5	0	misc.cytochrome P450	CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1); oxygen binding Encodes an oxime-metabolizing enzyme in the biosynthetic pathway of glucosinolates.  Is required for phytochrome signal transduction in red light.   Mutation confers auxin overproduction. Ident
MSGI1_87019	NODE_13901_length_151_cov_10.324503	10.3	14.3	0.7	0.5	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_70690	NODE_13913_length_181_cov_10.530387	5.2	10.5	3.2	57.7	0	4.2	0	-2.5	major CHO metabolism.synthesis.starch.transporter	"GPT2 (glucose-6-phosphate/phosphate translocator 2); antiporter/ glucose-6-phosphate transporter glucose6-Phosphate/phosphate transporter 2 Identical to Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor (GPT2) [Arabidopsis Thaliana] (GB"
MSGI1_70690	NODE_13913_length_181_cov_10.530387	5.2	10.5	3.2	57.7	0	4.2	0	-2.5	transport.metabolite transporters at the envelope membrane	"GPT2 (glucose-6-phosphate/phosphate translocator 2); antiporter/ glucose-6-phosphate transporter glucose6-Phosphate/phosphate transporter 2 Identical to Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor (GPT2) [Arabidopsis Thaliana] (GB"
MSGI1_19052	NODE_13917_length_522_cov_53.442528	37.2	27.8	13	34.5	0	1.4	1.5	0	RNA.regulation of transcription.putative transcription regulator	"SAR DNA-binding protein, putative SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; has similarity to MAR binding NOP58 protein Ide"
MSGI1_37473	NODE_13924_length_310_cov_9.961290	10.2	6.3	17.6	2.7	0	-2.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_19919	NODE_13928_length_506_cov_172.920944	41.2	110.3	47.5	126.2	1.4	1.4	0	0	transport.amino acids	amino acid transporter family protein  similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT5G38820.1); similar to Os06g0633800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058132.1); similar to putative N system amino ac
MSGI1_97189	NODE_13932_length_137_cov_11.036496	3.8	3.4	22.1	10.4	0	0	-2.5	0	"misc.gluco-, galacto- and mannosidases"	glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT1G26560.1); similar to Os10g0323500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064347.1); similar to Os03g0212800 [Oryza sativa (ja
MSGI1_31424	NODE_13934_length_356_cov_21.738764	21.7	14.9	5	9.7	0	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_62374	NODE_13936_length_202_cov_36.346535	40.8	34.5	1.3	1.9	0	0	5	4.2	protein.degradation	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55360.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13510.1); similar to Os07g0573400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060067.1); similar to Protein of unkn
MSGI1_111843	NODE_13944_length_115_cov_16.026087	14	11.1	0.6	0	0	0	4.5	4.5	protein.synthesis.elongation	"ATSCO1/ATSCO1/CPEF-G (SNOWY COTYLEDON1); translation elongation factor/ translation factor, nucleic acid binding Nuclear encoded protein consists of the five domains conserved in EF-G proteins, with two GTP-binding sites in the first domain, and an addit"
MSGI1_38446	NODE_13948_length_304_cov_39.398026	32.6	51.8	74.9	52	0	0	-1.2	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	"BLH1 (BLH1); DNA binding / transcription factor BEL1-like homeodomain 1 (BLH1) similar to BLH4 (BLH4), DNA binding [Arabidopsis thaliana] (TAIR:AT2G23760.3); similar to BEL1-like homeodomain transcription factor [Trifolium pratense] (GB:BAE71188.1); cont"
MSGI1_52165	NODE_1395_length_237_cov_14.278481	4.8	2.6	33.1	4	0	-3	-2.8	0	nucleotide metabolism.synthesis.pyrimidine.CTP synthetase	"EMB2742 (EMBRYO DEFECTIVE 2742); CTP synthase  similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT1G30820.1); similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT2"
MSGI1_10502	NODE_13955_length_742_cov_10.117250	7	11.9	0.3	0.2	0	0	0	5.9	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G17680.1); similar to TIR-NBS type disease resistance protein [Populus trichocarpa] (GB:ABF81459"
MSGI1_10502	NODE_13955_length_742_cov_10.117250	7	11.9	0.3	0.2	0	0	0	5.9	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_75340	NODE_13956_length_171_cov_187.894730	108.5	55.3	32.1	64.1	0	1	1.8	0	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L21 (RPL21C)  Identical to 60S ribosomal protein L21-1 (RPL21C) [Arabidopsis Thaliana] (GB:Q43291); similar to 60S ribosomal protein L21 (RPL21A) [Arabidopsis thaliana] (TAIR:AT1G09590.1); similar to 60S ribosomal protein L21, putat"
MSGI1_50255	NODE_13957_length_245_cov_64.995918	39.8	16.5	0.2	0	0	0	7.6	5	not assigned.unknown	not assigned.unknown
MSGI1_88310	NODE_13958_length_149_cov_5.691275	3.5	5.3	171.7	10	0	-4.1	-5.6	0	not assigned.unknown	not assigned.unknown
MSGI1_122425	NODE_13959_length_61_cov_84.098358	23.9	30	67	57.2	0	0	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_102253	NODE_13960_length_131_cov_6.977099	0.9	3.4	14.7	4.7	0	0	-4	0	DNA.unspecified	"SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative  similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT1G19650.1); similar to SEC14 cytosolic factor, putati"
MSGI1_102253	NODE_13960_length_131_cov_6.977099	0.9	3.4	14.7	4.7	0	0	-4	0	transport.misc	"SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative  similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT1G19650.1); similar to SEC14 cytosolic factor, putati"
MSGI1_122424	NODE_13961_length_61_cov_9.524590	7.6	12	0	0	0	0	0	4.6	signalling.light	SPA4 (SPA1-RELATED 4); signal transducer Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4).  SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repea
MSGI1_20792	NODE_13963_length_488_cov_43.717213	29	31.6	0.4	0	0	0	6.2	6	not assigned.unknown	not assigned.unknown
MSGI1_95661	NODE_13964_length_139_cov_5.158273	0.2	0.3	7.5	11	0	0	0	-5.2	minor CHO metabolism.others	aldo/keto reductase family protein  similar to oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G37770.2); similar to aldose reductase [Di (GB:CAC32834.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395)
MSGI1_12994	NODE_13982_length_658_cov_35.367783	32	13.1	19.5	3.8	0	-2.4	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	"similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44500.1); similar to Plant protein family, putative [Medicago truncatula] (GB:ABE79402.1); similar to H+-transporting two-sector ATPase, delta (OSCP) subunit; Hypothetical plant protein [Medic"
MSGI1_97188	NODE_13986_length_137_cov_17.927008	10	17.1	37.3	12.9	0	-1.5	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_31869	NODE_13989_length_352_cov_129.323868	170.1	1	2.3	0.6	-7.4	0	6.2	0	not assigned.unknown	not assigned.unknown
MSGI1_122422	NODE_13991_length_61_cov_17.721312	10.8	13.8	0	0	0	0	4.4	4.8	cell. vesicle transport	UNE18 (unfertilized embryo sac 18); oxysterol binding  similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT3G09300.1); similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT5G59420.1); similar to Os03g0274000 [O
MSGI1_112293	NODE_14016_length_111_cov_48.882881	26	68	133.9	34.8	1.4	-1.9	-2.4	0	stress.abiotic.heat	"heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)  Identical to Heat shock cognate 70 kDa protein 3 (Hsc70.3) (HSC70-3) [Arabidopsis Thaliana] (GB:O65719;GB:Q42345); similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR"
MSGI1_35616	NODE_14018_length_323_cov_10.631579	6.7	44.7	27	27.3	2.7	0	-2	0	RNA.regulation of transcription.MADS box transcription factor family	"SEP2 (SEPALLATA2); DNA binding / transcription factor MADS-box protein, binds K domain of AG in vivo Identical to Developmental protein SEPALLATA2 (Agamous-like MADS-box protein AGL4) (SEP2) [Arabidopsis Thaliana] (GB:P29384); similar to SEP1 (SEPALLATA1"
MSGI1_35616	NODE_14018_length_323_cov_10.631579	6.7	44.7	27	27.3	2.7	0	-2	0	development.unspecified	"SEP2 (SEPALLATA2); DNA binding / transcription factor MADS-box protein, binds K domain of AG in vivo Identical to Developmental protein SEPALLATA2 (Agamous-like MADS-box protein AGL4) (SEP2) [Arabidopsis Thaliana] (GB:P29384); similar to SEP1 (SEPALLATA1"
MSGI1_34263	NODE_14018_length_333_cov_14.351352	2.1	17.5	8	2.2	3.1	0	0	3	not assigned.unknown	not assigned.unknown
MSGI1_75339	NODE_14021_length_171_cov_11.801169	77.9	0.5	16.8	1.7	-7.3	-3.3	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_9637	NODE_1403_length_777_cov_31.292149	0.4	0.4	53.1	64.2	0	0	-7.1	-7.3	DNA.synthesis/chromatin structure	TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in prolifer
MSGI1_87018	NODE_14032_length_151_cov_47.947021	43.7	21.2	4.4	13.7	0	0	3.3	0	PS.calvin cyle.rubisco interacting	"CPN60A (chloroplast / 60 kDa chaperonin alpha subunit); ATP binding / protein binding / unfolded protein binding Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding.  Mutants display aberrant chloroplast and embryo development."
MSGI1_43505	NODE_14036_length_276_cov_12.420290	34.2	12.2	88.8	15.3	0	-2.5	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_64565	NODE_1404_length_196_cov_7.408163	4.1	20.6	4.2	8.6	2.3	0	0	0	transport.metal	"HMA2 (Heavy metal ATPase 2); cadmium-transporting ATPase encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc Identical to Putative cadmium/zinc-transporting ATPase 3 (EC 3.6.3.3) (EC 3.6.3.5) (HMA2) [Arabidopsis Thaliana] (GB:Q9SZW4"
MSGI1_111957	NODE_14043_length_114_cov_397.868408	155.5	1.5	76.1	6	-6.7	-3.7	1	0	not assigned.unknown	not assigned.unknown
MSGI1_95659	NODE_14045_length_139_cov_21.417267	35.3	9.2	42.5	11.3	-1.9	-1.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_112567	NODE_1405_length_109_cov_83.357796	46.8	37.1	0.6	0.3	0	0	6.3	7	not assigned.unknown	not assigned.unknown
MSGI1_30554	NODE_14055_length_364_cov_74.151100	46.2	16.9	22.1	31.5	-1.5	0	0	0	protein.synthesis.elongation	"EMB2726 (EMBRYO DEFECTIVE 2726); translation elongation factor  similar to translation elongation factor Ts (EF-Ts), putative [Arabidopsis thaliana] (TAIR:AT4G11120.1); similar to Os12g0541500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066956.1);"
MSGI1_50947	NODE_14057_length_242_cov_105.252068	66.2	29.8	46.7	50.5	-1.2	0	0	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"EMB2184 (EMBRYO DEFECTIVE 2184); structural constituent of ribosome  Identical to 50S ribosomal protein L31, chloroplast precursor (CL31) (RPL31) [Arabidopsis Thaliana] (GB:Q9FWS4); similar to similar to chloroplast 50S ribosomal protein L31 [Medicago sa"
MSGI1_15284	NODE_14064_length_596_cov_56.520134	72.6	35.7	6.9	5.2	-1	0	3.4	2.8	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2A.4 (HTA12) [Arabidopsis Thaliana] (GB:Q9LZ46); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT5G59870.1); similar to Histone H2A (GB:Q9M531); contains InterPro domain Histone-fold;"
MSGI1_33843	NODE_14070_length_336_cov_7.690476	20.3	11.5	83.2	17.1	0	-2.3	-2	0	misc.UDP glucosyl and glucoronyl transferases	"GATL9/LGT8 (Galacturonosyltransferase-like 9); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with  putative galacturonosyltransferase activity."
MSGI1_33843	NODE_14070_length_336_cov_7.690476	20.3	11.5	83.2	17.1	0	-2.3	-2	0	cell wall	"GATL9/LGT8 (Galacturonosyltransferase-like 9); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with  putative galacturonosyltransferase activity."
MSGI1_69374	NODE_14083_length_184_cov_59.711956	62.9	35	26.7	80.1	0	1.6	1.2	-1.2	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L27A (RPL27aC)  Identical to 60S ribosomal protein L27a-3 (RPL27AC) [Arabidopsis Thaliana] (GB:P49637;GB:Q8LE80); similar to RPL27A (RIBOSOMAL PROTEIN L27A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G23290."
MSGI1_117593	NODE_14085_length_66_cov_69.787880	30.5	44.7	31.1	16.2	0	0	0	1.5	not assigned.unknown	not assigned.unknown
MSGI1_77324	NODE_14092_length_167_cov_168.281433	177.9	101.5	43.3	42.5	0	0	2	1.3	not assigned.unknown	not assigned.unknown
MSGI1_25549	NODE_14095_length_420_cov_16.640476	15.5	2	24.3	3.2	-3	-2.9	0	0	stress.abiotic.drought/salt	RD22 (RESPONSIVE TO DESSICATION 22) responsive to dehydration 22 (RD22) mediated by ABA Identical to Dehydration-responsive protein RD22 precursor (RD22) [Arabidopsis Thaliana] (GB:Q08298); similar to BURP domain-containing protein [Arabidopsis thaliana]
MSGI1_112794	NODE_14097_length_107_cov_258.261688	154.3	16.5	69.7	19.8	-3.2	-1.8	1.1	0	cell wall.modification	"EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4); hydrolase, acting on glycosyl bonds EXGT-A4, endoxyloglucan transferase, Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 5 precursor (EC 2.4.1.207) (At-XTH5) (XTH-5) (XTH5) [Arabidopsis Tha"
MSGI1_115209	NODE_1410_length_86_cov_45.174419	39.4	70.5	39.5	29.4	0	0	0	1.3	not assigned.unknown	not assigned.unknown
MSGI1_122417	NODE_14113_length_61_cov_28.606558	18.5	10.2	0	0	0	0	5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_36447	NODE_14114_length_317_cov_11.955836	8.5	11.7	0.1	0	0	0	0	4.5	protein.targeting.nucleus	"cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative  Identical to Importin-alpha re-exporter (Cellular apoptosis susceptibility protein homolog) (CAS) [Arabidopsis Thaliana] (GB:Q9ZPY7;GB:Q56WE2;GB:Q7GA14); similar"
MSGI1_36447	NODE_14114_length_317_cov_11.955836	8.5	11.7	0.1	0	0	0	0	4.5	stress.biotic	"cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative  Identical to Importin-alpha re-exporter (Cellular apoptosis susceptibility protein homolog) (CAS) [Arabidopsis Thaliana] (GB:Q9ZPY7;GB:Q56WE2;GB:Q7GA14); similar"
MSGI1_29707	NODE_1412_length_372_cov_31.352150	9.9	4.1	30.3	26.1	0	0	0	-2.7	not assigned.unknown	not assigned.unknown
MSGI1_113714	NODE_14121_length_100_cov_62.820000	29.3	27.7	51.5	18.8	0	-1.5	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_113714	NODE_14121_length_100_cov_62.820000	29.3	27.7	51.5	18.8	0	-1.5	0	0	development.unspecified	nodulin MtN21 family protein  similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT4G08300.1); similar to Os10g0210500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064323.1); similar to unknown protein [Oryza sativa (japonica cult
MSGI1_85036	NODE_14124_length_154_cov_5.831169	0	0	11.3	4.4	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_104982	NODE_14135_length_128_cov_17.109375	7.8	15.7	2.3	2.1	0	0	0	2.9	not assigned.unknown	not assigned.unknown
MSGI1_57894	NODE_14138_length_216_cov_8.768518	5.6	5.2	33.1	19.5	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_122414	NODE_14142_length_61_cov_198.967209	122.9	92.8	26.7	39.1	0	0	2.2	1.2	OPP.oxidative PP.6-phosphogluconate dehydrogenase	6-phosphogluconate dehydrogenase family protein  similar to 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT1G64190.1); similar to 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT5G41670.2); s
MSGI1_102252	NODE_14144_length_131_cov_208.015274	94.7	71.5	57.2	33.7	0	0	0	1.1	not assigned.unknown	not assigned.unknown
MSGI1_59714	NODE_14145_length_210_cov_52.000000	45.5	1.2	0.2	0	-5.2	0	7.8	0	not assigned.unknown	not assigned.unknown
MSGI1_51687	NODE_14150_length_239_cov_96.008369	161.5	136.6	76.3	123.9	0	0	1.1	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S20 (RPS20C)  Identical to 40S ribosomal protein S20-1 (RPS20C) [Arabidopsis Thaliana] (GB:P49200;GB:Q42168;GB:Q9FPI1;GB:Q9LDG8); similar to 40S ribosomal protein S20 (RPS20A) [Arabidopsis thaliana] (TAIR:AT3G45030.1); similar to Os
MSGI1_122412	NODE_14160_length_61_cov_21.868853	14.7	13.8	0	0	0	0	4.9	4.8	not assigned.unknown	not assigned.unknown
MSGI1_122410	NODE_14177_length_61_cov_16.278688	2.6	15.1	0	0	0	0	0	4.9	not assigned.unknown	not assigned.unknown
MSGI1_112974	NODE_14178_length_106_cov_23.858490	19.5	17.4	0.3	0	0	0	6	5.1	signalling.MAP kinases	ATMPK20 (Arabidopsis thaliana MAP kinase 20); MAP kinase member of MAP Kinase Identical to Mitogen-activated protein kinase 20 (EC 2.7.11.24) (MAP kinase 20) (AtMPK20) (MPK20) [Arabidopsis Thaliana] (GB:Q9SJG9;GB:Q945L8); similar to ATMPK19 (Arabidopsis
MSGI1_80760	NODE_14182_length_161_cov_121.819878	53.4	16.5	28	24	-1.7	0	0	0	cell wall.cellulose synthesis	"ATCSLA02 (Cellulose synthase-like A2); transferase, transferring glycosyl groups encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein similar to ATCSLA15 (Cellulose synthase-like A15), transferase, transfer"
MSGI1_69373	NODE_14187_length_184_cov_48.907608	1.4	0.4	64.7	91.7	0	0	-5.5	-7.8	protein.synthesis.misc ribososomal protein	60S ribosomal protein L36a/L44 (RPL36aB)  Identical to 60S ribosomal protein L36a (RPL36AB) [Arabidopsis Thaliana] (GB:O23290;GB:Q7GD84); similar to 60S ribosomal protein L36a/L44 (RPL36aA) [Arabidopsis thaliana] (TAIR:AT3G23390.1); similar to 60S ribosom
MSGI1_57576	NODE_1419_length_217_cov_9.460830	0.1	0.2	9.3	11.2	0	0	0	-5.8	protein.degradation.ubiquitin.proteasom	PAA2 (20S proteasome alpha subunit A2); peptidase Encodes 20S proteasome subunit PAA2 (PAA2). Identical to Proteasome subunit alpha type 6-B (EC 3.4.25.1) (Proteasome subunit alpha type 1) (20S proteasome alpha subunit A-2) (PAA2) [Arabidopsis Thaliana]
MSGI1_80759	NODE_14194_length_161_cov_19.118011	27.9	11.6	45.6	18.3	0	-1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_94885	NODE_14195_length_140_cov_118.942856	119.1	93	10.9	44.4	0	2	3.4	1.1	protein.degradation.subtilases	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14067.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_122408	NODE_14204_length_61_cov_139.770493	76.8	59	25.1	57.2	0	1.2	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_34430	NODE_14212_length_332_cov_58.096386	34.1	74.2	29.3	44.5	1.1	0	0	0	development.unspecified	senescence-associated protein-related  similar to senescence-associated protein-related [Arabidopsis thaliana] (TAIR:AT1G78020.1); similar to 80C09_23 [Brassica rapa subsp. pekinensis] (GB:AAZ41834.1); contains InterPro domain Protein of unknown function
MSGI1_94884	NODE_14215_length_140_cov_50.157143	3.4	7.2	91.1	1.7	0	-5.7	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_52163	NODE_14218_length_237_cov_22.590717	27.4	27.9	0.3	0	0	0	6.5	5.8	stress.biotic	"ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19); ATPase, coupled to transmembrane movement of substances / auxin efflux transporter Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates"
MSGI1_52163	NODE_14218_length_237_cov_22.590717	27.4	27.9	0.3	0	0	0	6.5	5.8	transport.ABC transporters and multidrug resistance systems	"ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19); ATPase, coupled to transmembrane movement of substances / auxin efflux transporter Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates"
MSGI1_25052	NODE_14223_length_427_cov_7.552693	6.7	12.7	8.6	1	0	0	0	3.7	signalling.calcium	calmodulin-binding protein  similar to calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G18750.2); similar to putative calmodulin-binding protein-related [Medicago truncatula] (GB:ABE78901.1); contains InterPro domain Calmodulin binding protein-like; (I
MSGI1_79556	NODE_14227_length_163_cov_136.668716	58.1	26.2	54.9	100.6	-1.1	0	0	-1.9	cell wall.modification	"ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A10) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to Expan"
MSGI1_56982	NODE_14229_length_219_cov_6.812786	1	2.3	16.6	7.7	0	0	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_90408	NODE_1423_length_146_cov_7.547945	2.2	2.9	17.6	9.9	0	0	-3	0	stress.biotic	"disease resistance protein (NBS-LRR class), putative  Identical to Putative disease resistance RPP13-like protein 1 (RPPL1) [Arabidopsis Thaliana] (GB:Q9LRR4); similar to disease resistance protein (NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:A"
MSGI1_122407	NODE_14230_length_61_cov_67.934425	50.7	19.2	24.3	32.9	-1.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_115509	NODE_14231_length_83_cov_16.987951	16.1	9.2	0.7	2.1	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_122405	NODE_14235_length_61_cov_46.377048	16.4	8.8	0	0	0	0	5	0	not assigned.unknown	not assigned.unknown
MSGI1_11726	NODE_14236_length_699_cov_83.021461	56.6	82.7	160.8	44.4	0	-1.9	-1.5	0	protein.postranslational modification	AHG3/ATPP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA); protein binding / protein phosphatase type 2C Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA.
MSGI1_104081	NODE_14239_length_129_cov_12.038759	5.7	2.8	21.2	4.5	0	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_78435	NODE_14250_length_165_cov_128.945450	54.8	66.8	0.2	0	0	0	8.1	7.1	not assigned.unknown	not assigned.unknown
MSGI1_122400	NODE_14254_length_61_cov_27.213116	33.4	2.7	4.4	3.7	-3.6	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_39462	NODE_14255_length_298_cov_33.513424	37.7	15	3.2	7.1	0	0	3.6	0	RNA.regulation of transcription.unclassified	"chloroplast nucleoid DNA-binding protein, putative  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G10760.1); similar to CND41, chloroplast nucleoid DNA binding protein [Nicotiana tabacum] (GB:BAA22813.1); contains InterPro d"
MSGI1_57264	NODE_14261_length_218_cov_119.793579	138	55.5	72.7	70.6	-1.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_81870	NODE_14265_length_159_cov_13.352201	14.3	4.8	1.3	2.5	0	0	3.5	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"amidase family protein  similar to amidase family protein [Arabidopsis thaliana] (TAIR:AT5G07360.2); similar to amidase, putative [Brassica oleracea] (GB:ABD65012.1); contains InterPro domain Amidase; (InterPro:IPR000120)"
MSGI1_66404	NODE_14267_length_191_cov_11.900523	0.6	0.4	33.3	5.6	0	-2.6	-5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_34429	NODE_14269_length_332_cov_36.855423	12.6	21.7	1.1	0.6	0	0	3.5	5.2	not assigned.unknown	not assigned.unknown
MSGI1_113712	NODE_14275_length_100_cov_49.040001	42.1	4	12.4	1.6	-3.4	0	1.8	0	lipid metabolism.Phospholipid synthesis	ATGPAT6/GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase Encodes a protein with glycerol-3-phosphate acyltransferase activity. Identical to Glycerol-3-phosphate acyltransferase 6 (EC 2.3.1.15)
MSGI1_3275	NODE_1428_length_1285_cov_12.229572	16.4	7.6	32.2	9.7	0	-1.7	0	0	major CHO metabolism.degradation.sucrose.invertases.neutral	"beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative  similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] ("
MSGI1_122396	NODE_1428_length_61_cov_36.000000	76.8	52.5	22.7	38.7	0	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_93302	NODE_14280_length_142_cov_12.218309	12.2	8.2	0	0	0	0	4.6	0	protein.targeting.secretory pathway.ER	"ER lumen protein retaining receptor, putative / HDEL receptor, putative  similar to ERD2 (ER lumen protein retaining receptor 2), receptor [Arabidopsis thaliana] (TAIR:AT1G29330.1); similar to ER lumen protein retaining receptor (HDEL receptor) (PGP169-1"
MSGI1_23263	NODE_14284_length_453_cov_101.461372	69.5	6.1	10.2	9.3	-3.5	0	2.8	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL10 (beta-galactosidase 10); beta-galactosidase member of Glycoside Hydrolase Family 35 similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative"
MSGI1_23263	NODE_14284_length_453_cov_101.461372	69.5	6.1	10.2	9.3	-3.5	0	2.8	0	"misc.gluco-, galacto- and mannosidases"	"BGAL10 (beta-galactosidase 10); beta-galactosidase member of Glycoside Hydrolase Family 35 similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative"
MSGI1_58486	NODE_14285_length_214_cov_7.841122	13.2	17.6	50.5	10.4	0	-2.3	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_115208	NODE_14285_length_86_cov_88.011627	7.9	33.2	1	6.5	2.1	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_52723	NODE_14289_length_235_cov_9.365957	1.9	10.5	0.3	0.2	0	0	0	5.7	not assigned.unknown	not assigned.unknown
MSGI1_118174	NODE_14290_length_62_cov_56.983871	19.8	16.8	4	4.9	0	0	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_8704	NODE_14293_length_821_cov_61.323994	47.6	34.2	20.7	45.3	0	0	1.2	0	protein.synthesis.initiation	"EIF3G1 (eukaryotic translation initiation factor 3G1); RNA binding / translation initiation factor One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3). similar to EIF3G2 (eukaryotic translation initiation factor 3G2),"
MSGI1_35209	NODE_14296_length_326_cov_34.773006	9.9	16.9	61	11.5	0	-2.4	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_114875	NODE_14304_length_89_cov_17.662922	0	0	6.2	29.9	0	2.3	0	-5.9	not assigned.unknown	not assigned.unknown
MSGI1_114343	NODE_14304_length_94_cov_25.329786	25.6	12.3	2.8	3.2	0	0	3.2	0	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	"lipase class 3 family protein  similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT2G30550.2); similar to Os01g0651800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043734.1); similar to Lipase, putative [Oryza sativa (japonica c"
MSGI1_57263	NODE_14307_length_218_cov_74.720184	22.9	10.8	0.2	0	0	0	6.8	4.4	not assigned.unknown	not assigned.unknown
MSGI1_122395	NODE_14308_length_61_cov_837.049194	122.3	83.4	35.1	73.7	0	1.1	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_81869	NODE_14316_length_159_cov_123.628929	10.3	48	6.4	21.4	2.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_53508	NODE_14317_length_232_cov_77.586205	13.9	41.3	32	44.8	1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_111480	NODE_14320_length_118_cov_35.500000	32.4	10.9	5.7	5.9	-1.6	0	2.5	0	protein.degradation.subtilases	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G20430.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabid"
MSGI1_111480	NODE_14320_length_118_cov_35.500000	32.4	10.9	5.7	5.9	-1.6	0	2.5	0	cell wall	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G20430.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabid"
MSGI1_61704	NODE_14335_length_204_cov_14.598040	2	20.1	1.1	4.5	3.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_60037	NODE_14336_length_209_cov_15.612440	0.3	16	0.2	1.3	5.7	0	0	3.6	not assigned.unknown	not assigned.unknown
MSGI1_52722	NODE_14336_length_235_cov_10.187234	1.3	6.2	13.9	11.5	0	0	-3.4	0	protein.degradation.ubiquitin.E3.SCF.FBOX	MAX2 (MORE AXILLARY BRANCHES 2); ubiquitin-protein ligase The mutations at  MAX2 cause increased hypocotyl and petiole elongation in  light-grown seedlings. Positional cloning identifies MAX2  as a member of the F-box leucine-rich repeat family of  prote
MSGI1_99626	NODE_14339_length_134_cov_59.395523	46.8	195.8	128	164.6	2.1	0	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_60036	NODE_14346_length_209_cov_16.526316	16.4	22.8	47.8	17.4	0	-1.5	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_104980	NODE_14348_length_128_cov_45.070312	11.5	21.8	0	0	0	0	4.5	5.4	not assigned.unknown	not assigned.unknown
MSGI1_37039	NODE_1435_length_313_cov_16.651756	10.9	13	104.2	9.6	0	-3.4	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_55917	NODE_14365_length_223_cov_6.394619	0	0	14.2	0.5	0	-4.8	-4.8	0	stress.biotic	"TIR (TOLL/INTERLEUKIN-1 RECEPTOR-LIKE); transmembrane receptor Toll/interleukin-1 receptor-like protein (TIR) mRNA, similar to disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana] (TAIR:AT1G72910.1); similar to TMV resistance prote"
MSGI1_105959	NODE_14381_length_127_cov_21.220472	0	0	7.2	54.9	0	2.9	0	-6.8	not assigned.unknown	not assigned.unknown
MSGI1_47321	NODE_14391_length_258_cov_28.608526	0.4	0.7	64	1.3	0	-5.6	-7.3	0	amino acid metabolism.synthesis.branched chain group.common	"ATBCAT-2; branched-chain-amino-acid transaminase/ catalytic Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. Identical to Branched-chain-amino-acid aminotransferase 2, chloroplast"
MSGI1_94881	NODE_14397_length_140_cov_22.392857	2.8	10.5	18.4	33.2	0	0	-2.7	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_58176	NODE_14411_length_215_cov_17.334885	8.6	7.9	39.9	13.1	0	-1.6	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_115002	NODE_14419_length_88_cov_90.670456	59.8	61.5	20.6	26.3	0	0	1.5	1.2	signalling.receptor kinases.proline extensin like	ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1); ATP binding / protein kinase encodes an ortholog of Brassica napus proline extensin-like receptor kinase. Expression of the brassica gene is induced by wounding and fungal infection. similar to protein k
MSGI1_75333	NODE_14426_length_171_cov_6.292397	1.3	3.3	44	15.2	0	-1.5	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_20738	NODE_14426_length_489_cov_20.159510	11.1	5.8	34.6	3.6	0	-3.3	-1.6	0	signalling.calcium	"TCH2 (TOUCH 2); calcium ion binding Encodes a protein with 40% similarity to calmodulin. Binds Ca(2+) and, as a consequence, undergoes conformational changes. CML24 expression occurs in all major organs, and transcript levels are increased from 2- to 15-"
MSGI1_122389	NODE_14427_length_61_cov_150.622955	3.9	28	39.9	75	2.8	0	-3.4	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_89691	NODE_14449_length_147_cov_6.312925	0	0	14.7	6	0	0	-4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_69372	NODE_14451_length_184_cov_42.309784	3.5	0.6	53	14.3	0	-1.9	-3.9	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_103180	NODE_14455_length_130_cov_56.515385	73.8	48.2	82.6	222.6	0	1.4	0	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_48406	NODE_1446_length_253_cov_326.640320	1.9	3.8	315.4	7.2	0	-5.5	-7.4	0	not assigned.unknown	not assigned.unknown
MSGI1_115995	NODE_14462_length_79_cov_33.177216	0.2	0.2	19.1	15.1	0	0	-6.6	-6.2	not assigned.unknown	not assigned.unknown
MSGI1_83140	NODE_14477_length_157_cov_51.885349	55.5	8	0.4	0.7	-2.8	0	7.1	0	not assigned.unknown	not assigned.unknown
MSGI1_42208	NODE_14488_length_283_cov_43.194347	0.6	1	21.9	9.3	0	0	-5.2	0	hormone metabolism.ethylene.induced-regulated-responsive-activated	"universal stress protein (USP) family protein  similar to ethylene-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G09740.1); similar to universal stress protein family [Medicago truncatula] (GB:ABE78101.1); contains InterPro domain Universa"
MSGI1_68901	NODE_14489_length_185_cov_14.643243	2	2.2	32.1	1.4	0	-4.5	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_4329	NODE_14492_length_1131_cov_28.557913	1.3	0.8	79.7	9	0	-3.1	-5.9	0	not assigned.unknown	not assigned.unknown
MSGI1_100509	NODE_14494_length_133_cov_4.105263	4.1	1.1	4.8	16.5	0	0	0	-3.9	cell wall.modification	"ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A10) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to Expan"
MSGI1_48861	NODE_14516_length_251_cov_20.920319	0.2	0.1	47.2	0	0	-6.6	-7.9	0	development.late embryogenesis abundant	"late embryogenesis abundant protein, putative / LEA protein, putative  similar to late embryogenesis abundant protein, putative / LEA protein, putative [Arabidopsis thaliana] (TAIR:AT1G52690.2); similar to group 3 late embryogenesis abundant protein [Bra"
MSGI1_68094	NODE_14518_length_187_cov_4.508021	20.2	0.1	5.3	0.8	-7.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_115994	NODE_1452_length_79_cov_182.227844	66.5	96.8	148.6	144.8	0	0	-1.2	0	protein.degradation.cysteine protease	"cysteine protease inhibitor, putative / cystatin, putative  similar to cysteine protease inhibitor, putative / cystatin, putative [Arabidopsis thaliana] (TAIR:AT5G05110.1); similar to At3g12490-like protein [Boechera stricta] (GB:ABB89766.1); similar to"
MSGI1_48859	NODE_14532_length_251_cov_45.780876	38.1	33.5	53.9	71	0	0	0	-1.1	not assigned.unknown	not assigned.unknown
MSGI1_44716	NODE_14536_length_270_cov_51.766666	23.8	32.7	0.1	0.3	0	0	7.9	6.8	not assigned.unknown	not assigned.unknown
MSGI1_30846	NODE_14539_length_361_cov_18.844875	38.9	49.6	68.4	25.9	0	-1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_25127	NODE_14549_length_426_cov_16.009390	24.7	8.6	5.7	5	0	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_89014	NODE_14550_length_148_cov_54.283783	39.8	36.3	1.4	0	0	0	4.8	6.2	redox.ascorbate and glutathione	"ATMDAR1 (MONODEHYDROASCORBATE REDUCTASE 1); monodehydroascorbate reductase (NADH) Encodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2 Identical to Probable monodehydroascorbate reduct"
MSGI1_26929	NODE_14578_length_403_cov_29.821341	5.5	18.9	27.9	5.7	0	-2.3	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_68092	NODE_14584_length_187_cov_7.631016	0	0	17.6	9.3	0	0	-5.1	0	DNA.synthesis/chromatin structure	tRNA-splicing endonuclease positive effector-related  similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:AT1G65810.1); similar to putative helicase [Oryza sativa (japonica cultivar-group)] (GB:AAM76346.1); similar
MSGI1_49312	NODE_14588_length_249_cov_8.273092	1.8	11.1	19.8	2.4	0	-3	-3.5	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. simi"
MSGI1_101429	NODE_14591_length_132_cov_40.924244	63.1	37.3	29.4	70.1	0	1.3	1.1	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L22-2 (RPL22B)  Identical to 60S ribosomal protein L22-2 (RPL22B) [Arabidopsis Thaliana] (GB:Q9M9W1); similar to 60S ribosomal protein L22 (RPL22C) [Arabidopsis thaliana] (TAIR:AT5G27770.1); similar to Ribosomal L22e protein [Medicag
MSGI1_72977	NODE_14591_length_176_cov_9.943182	1.8	3.9	3.7	20.1	0	2.4	0	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_55629	NODE_14593_length_224_cov_4.638393	2.5	5.5	39.2	9.1	0	-2.1	-4	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	RAP2.1 (related to AP2 1); DNA binding / transcription factor encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP
MSGI1_78961	NODE_14597_length_164_cov_5.573171	0.3	0.3	11	0	0	-4.5	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_11023	NODE_14604_length_723_cov_59.258644	25.2	32.3	21.8	52.9	0	1.3	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_11023	NODE_14604_length_723_cov_59.258644	25.2	32.3	21.8	52.9	0	1.3	0	0	transport.Major Intrinsic Proteins.NIP	NIP6;1 (NOD26-like intrinsic protein 6;1); water channel Similar to gb:D17443 major intrinsic protein from Oryza sativa Identical to Aquaporin NIP6.1 (NOD26-like intrinsic protein 6.1) (NIP6.1) [Arabidopsis Thaliana] (GB:Q9SAI4;GB:Q5PP68); similar to NIP
MSGI1_122383	NODE_14621_length_61_cov_15.737705	0	0	15.2	14.8	0	0	-4.9	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_19881	NODE_14623_length_507_cov_12.526628	6.1	3.1	21.7	4.5	0	-2.3	0	0	transport.peptides and oligopeptides	"proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G16180.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32296.1); sim"
MSGI1_103179	NODE_14625_length_130_cov_15.661538	0	0	19.6	3.9	0	0	-5.3	0	signalling.in sugar and nutrient physiology	"photoassimilate-responsive protein-related  similar to photoassimilate-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT5G52390.1); similar to NtEIG-E80 [Nicotiana tabacum] (GB:BAB16427.1); contains InterPro domain PAR1; (InterPro:IPR009489)"
MSGI1_42023	NODE_14629_length_284_cov_21.964788	1.8	4.9	27.4	5.1	0	-2.4	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_113631	NODE_14635_length_101_cov_44.574257	26.7	20.1	7.8	7.8	0	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_31868	NODE_14636_length_352_cov_22.457386	0	0	101.3	26.5	0	-1.9	-7.7	-5.7	not assigned.unknown	not assigned.unknown
MSGI1_5364	NODE_14641_length_1022_cov_54.773972	27.5	35.8	62.7	24.5	0	-1.4	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_10147	NODE_14645_length_756_cov_111.458992	75.6	44.9	38.4	40.4	0	0	1	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L10A (RPL10aA)  Identical to 60S ribosomal protein L10a-1 (RPL10AA) [Arabidopsis Thaliana] (GB:Q8VZB9;GB:Q9SJF4); similar to 60S ribosomal protein L10A (RPL10aB) [Arabidopsis thaliana] (TAIR:AT2G27530.2); similar to Os02g0321900 [Ory
MSGI1_90405	NODE_1468_length_146_cov_127.212326	45.9	22	17.1	4.8	0	0	1.4	2.2	not assigned.unknown	not assigned.unknown
MSGI1_122381	NODE_14680_length_61_cov_13.344262	0	0	18	9.5	0	0	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_69371	NODE_14712_length_184_cov_36.385868	12.4	13	36.2	10	0	-1.9	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_122378	NODE_14714_length_61_cov_16.524590	0.2	0	14	22.6	0	0	-6.1	-5.5	amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoglycerate dehydrogenase	"D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative  similar to PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE), phosphoglycerate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G17745.1); similar to EDA9 (embryo sac development arrest 9), NAD binding"
MSGI1_87650	NODE_14719_length_150_cov_8.806666	0	0	19.4	5.7	0	0	-5.3	0	not assigned.unknown	not assigned.unknown
MSGI1_92577	NODE_14729_length_143_cov_19.230770	29.3	14	1.9	4.9	0	0	3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_23575	NODE_14741_length_448_cov_38.743305	7.3	32.8	3.3	5	2.2	0	0	2.7	cell wall.degradation.pectate lyases and polygalacturonases	pectate lyase family protein  Identical to Probable pectate lyase 5 precursor (EC 4.2.2.2) [Arabidopsis Thaliana] (GB:Q9FXD8;GB:Q8L8V9;GB:Q8W116); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G24780.1); similar to pectate lyase
MSGI1_114342	NODE_14741_length_94_cov_35.117020	32.9	81.1	36.8	55.5	1.3	0	0	0	RNA.regulation of transcription.bZIP transcription factor family	GBF6 (G-box binding factor 6); DNA binding / transcription factor Encodes a basic domain leucine zipper (bZip) transcription factor. similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G75390.1); similar to cAMP response e
MSGI1_4683	NODE_14754_length_1093_cov_22.261665	6.7	15.3	37.5	13.4	0	-1.5	-2.5	0	transport.ABC transporters and multidrug resistance systems	ATGCN1 (Arabidopsis thaliana general control non-repressible 1) member of GCN subfamily similar to ATGCN4 (Arabidopsis thaliana general control non-repressible 4) [Arabidopsis thaliana] (TAIR:AT3G54540.1); similar to ABC transporter homolog [Populus nigr
MSGI1_78959	NODE_14768_length_164_cov_5.268293	6.7	25	4.8	12.3	1.9	0	0	0	misc.misc2	"formamidase, putative / formamide amidohydrolase, putative  similar to formamidase, putative / formamide amidohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G37550.1); similar to Os01g0764900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044346"
MSGI1_76860	NODE_1478_length_168_cov_133.619049	43.8	11.4	19.5	16.7	-1.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_75827	NODE_14783_length_170_cov_8.741177	0	0	8	17.2	0	0	0	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_95653	NODE_14784_length_139_cov_7.208633	1	0.9	15.8	4.8	0	0	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_38106	NODE_14787_length_306_cov_21.473856	15.4	18.1	1.3	4.8	0	0	3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_98809	NODE_14793_length_135_cov_18.881481	7	19.2	36.7	8.7	0	-2.1	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_24317	NODE_14796_length_436_cov_6.665138	0	0	10.2	12.9	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_56171	NODE_14798_length_222_cov_4.599099	3	2.1	12.9	1.1	0	-3.6	0	0	signalling.phosphorelay	"AHP4 (HPT PHOSPHOTRANSMITTER 4); histidine phosphotransfer kinase/ transferase, transferring phosphorus-containing groups Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduct"
MSGI1_56171	NODE_14798_length_222_cov_4.599099	3	2.1	12.9	1.1	0	-3.6	0	0	hormone metabolism.cytokinin.signal transduction	"AHP4 (HPT PHOSPHOTRANSMITTER 4); histidine phosphotransfer kinase/ transferase, transferring phosphorus-containing groups Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduct"
MSGI1_38105	NODE_148_length_306_cov_437.993469	143.6	339.8	93.5	127.3	1.2	0	0	1.4	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_38105	NODE_148_length_306_cov_437.993469	143.6	339.8	93.5	127.3	1.2	0	0	1.4	major CHO metabolism.degradation.sucrose.Susy	"SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups Encodes a protein with sucrose synthase activity (SUS4). similar to SUS1 (SUCROSE SYNTHASE 1), UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TA"
MSGI1_69802	NODE_14811_length_183_cov_8.519126	2.3	5.1	34.4	3.1	0	-3.5	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_87648	NODE_14814_length_150_cov_21.446667	0	0.1	43.3	3.3	0	-3.7	-6.4	0	not assigned.unknown	not assigned.unknown
MSGI1_57574	NODE_14820_length_217_cov_25.940092	35.8	29.4	2.1	3.2	0	0	4.1	3.2	not assigned.unknown	not assigned.unknown
MSGI1_111140	NODE_14834_length_121_cov_12.107438	4.1	3.5	10.4	23.1	0	0	0	-2.7	not assigned.unknown	not assigned.unknown
MSGI1_42419	NODE_14847_length_282_cov_12.234042	0.9	0.9	30.5	17.5	0	0	-5.1	-4.3	cell wall	"serine/threonine protein kinase, putative  similar to serine/threonine protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G38240.1); similar to receptor serine/threonine kinase PR5K (GB:AAC49208.1); contains InterPro domain Serine/threonine protein"
MSGI1_42419	NODE_14847_length_282_cov_12.234042	0.9	0.9	30.5	17.5	0	0	-5.1	-4.3	signalling.receptor kinases.wheat LRK10 like	"serine/threonine protein kinase, putative  similar to serine/threonine protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G38240.1); similar to receptor serine/threonine kinase PR5K (GB:AAC49208.1); contains InterPro domain Serine/threonine protein"
MSGI1_122372	NODE_14848_length_61_cov_43.295082	31.3	24.5	3.2	11.9	0	0	3.3	0	protein.folding	"chaperonin, putative  similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT5G16070.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96914.1); similar to Chaperonin complex component, TCP-1 zeta subunit (CCT6) (ISS) [Ostreococcus taur"
MSGI1_3650	NODE_1485_length_1221_cov_231.510239	339.2	601.9	280.2	559.9	0	1	0	0	amino acid metabolism.synthesis.aromatic aa.chorismate.3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	"2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative  similar to DHS2 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE), 3-deoxy-7-phosphoheptulonate syntha"
MSGI1_47095	NODE_14850_length_259_cov_16.231661	0.1	0.2	18.6	24.1	0	0	-7.5	-6.9	protein.degradation.ubiquitin.E3.SCF.SKP	ASK2 (ARABIDOPSIS SKP1-LIKE 2); ubiquitin-protein ligase Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis. Identical to SKP1-like protein 1B (SKP1-like 2) (UFO-binding protein 2) (SKP
MSGI1_58811	NODE_14854_length_213_cov_11.492958	0	0	24.6	20.8	0	0	-5.6	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_51131	NODE_14861_length_241_cov_11.074689	11.2	12.3	0	0	0	0	4.5	4.6	protein.folding	"chaperonin, putative  similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G18190.1); similar to hypothetical protein DDBDRAFT_0217758 [Dictyostelium discoideum AX4] (GB:XP_643258.1); similar to Os03g0804800 [Oryza sativa (japonica cultivar-gr"
MSGI1_58174	NODE_14869_length_215_cov_24.311628	7.8	5.2	51.9	1.3	0	-5.3	-2.7	0	protein.degradation.cysteine protease	"cysteine proteinase, putative  similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G48350.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (Int"
MSGI1_104074	NODE_14874_length_129_cov_7.984496	2	0.1	8.7	17.7	0	0	0	-7.5	nucleotide metabolism.degradation	inosine-uridine preferring nucleoside hydrolase family protein  similar to inosine-uridine preferring nucleoside hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G18890.1); similar to putative inosine-uridine preferring nucleoside hydrolase [Oryza
MSGI1_68090	NODE_14886_length_187_cov_6.149733	7.1	1.9	15.2	2	0	-2.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_21205	NODE_1490_length_481_cov_18.463617	14	38.5	10.6	32	1.5	1.6	0	0	protein.degradation.serine protease	ATP-dependent Clp protease ClpB protein-related  similar to heat shock protein-related [Arabidopsis thaliana] (TAIR:AT2G29970.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91056.1); similar to Os12g0104300 [Oryza sativa
MSGI1_14286	NODE_14907_length_622_cov_10.194533	3	4.5	26.6	3.3	0	-3	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_18840	NODE_14911_length_525_cov_11.495238	1.9	18.4	9.8	15.8	3.3	0	0	0	transport.ABC transporters and multidrug resistance systems	"ABC transporter family protein  Identical to Multidrug resistance protein 13 (P-glycoprotein 15) (MDR13) [Arabidopsis Thaliana] (GB:Q9LHD1); similar to PGP18 (P-GLYCOPROTEIN 18), ATPase, coupled to transmembrane movement of substances [Arabidopsis thalia"
MSGI1_24013	NODE_14912_length_440_cov_9.425000	0.2	4.5	25.2	1.9	0	-3.7	-7	0	not assigned.unknown	not assigned.unknown
MSGI1_35068	NODE_14917_length_327_cov_14.039756	22.1	2.3	1.4	1	-3.3	0	4	0	not assigned.unknown	not assigned.unknown
MSGI1_111842	NODE_14922_length_115_cov_57.052174	3.1	1.6	22.5	10.6	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_80753	NODE_14924_length_161_cov_39.006210	10.4	24.2	48.4	17.6	0	-1.5	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_75826	NODE_14928_length_170_cov_27.200001	0.1	0	53.1	58	0	0	-9.1	-6.9	protein.synthesis.misc ribososomal protein	60S ribosomal protein L17 (RPL17B)  Identical to 60S ribosomal protein L17-2 (RPL17B) [Arabidopsis Thaliana] (GB:P51413;GB:O64803); similar to 60S ribosomal protein L17 (RPL17A) [Arabidopsis thaliana] (TAIR:AT1G27400.1); similar to ribosomal protein [Pet
MSGI1_111841	NODE_1493_length_115_cov_96.678261	62.3	34.2	11.4	22.6	0	0	2.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L15 (RPL15B)  Identical to 60S ribosomal protein L15-2 (RPL15B) [Arabidopsis Thaliana] (GB:Q8VYF1;GB:O23582); Identical to 60S ribosomal protein L15-1 (RPL15A) [Arabidopsis Thaliana] (GB:O23515); similar to 60S ribosomal protein L15
MSGI1_26182	NODE_14939_length_412_cov_17.939320	27.1	39.7	25.7	60.9	0	1.2	0	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	ATHB-1 (Homeobox-leucine zipper protein HAT5); transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf development. Identical to Homeobox-leucine zipper protein HAT5 (Homeodomain-leucine zip
MSGI1_24231	NODE_1494_length_437_cov_23.713959	6.3	11.8	29.5	2.3	0	-3.7	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_83744	NODE_14941_length_156_cov_313.506409	180.8	203.4	16.6	20.4	0	0	3.4	3.3	cell wall	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_83744	NODE_14941_length_156_cov_313.506409	180.8	203.4	16.6	20.4	0	0	3.4	3.3	protein.degradation.subtilases	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_35750	NODE_14948_length_322_cov_64.913040	17.3	38.3	10.4	31.9	0	1.6	0	0	"RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family"	STO (SALT TOLERANCE); transcription factor/ zinc ion binding Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. Identical to Salt-tolerance protein (STO) [Arabidopsis Tha
MSGI1_10293	NODE_14949_length_750_cov_26.958666	20	19.2	0	0	0	0	5.3	5.3	DNA.unspecified	3'-5' exonuclease domain-containing protein  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G12460.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87022.1); similar to OSIGBa0101A01.4 [Oryza sativa (indica
MSGI1_68088	NODE_14950_length_187_cov_21.909090	6.5	33.1	19.7	6.3	2.3	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_66815	NODE_14954_length_190_cov_26.900000	28.3	0.3	5.6	0.2	-6.6	0	2.3	0	hormone metabolism.auxin.synthesis-degradation	"UGT74B1 (UDP-glucosyl transferase 74B1); UDP-glycosyltransferase/ thiohydroximate beta-D-glucosyltransferase/ transferase, transferring glycosyl groups Encodes a UDP-glucose:thiohydroximate S-glucosyltransferase, involved in glucosinolate biosynthesis si"
MSGI1_14429	NODE_1497_length_618_cov_361.419098	282.9	62.2	87.5	43.4	-2.2	0	1.7	0	cell wall.pectin*esterases.acetyl esterase	"pectinacetylesterase, putative  similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT5G45280.2); similar to OSJNBa0041A02.14 [Oryza sativa (japonica cultivar-group)] (GB:CAD41867.2); similar to pectinacetylesterase precursor [Vigna ra"
MSGI1_109880	NODE_1498_length_123_cov_14.544716	21.5	13.8	39.6	14.7	0	-1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_71550	NODE_14983_length_179_cov_12.078213	174.1	85.6	22.7	87.3	-1	1.9	2.9	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L4/L1 (RPL4A)  Identical to 60S ribosomal protein L4-1 (L1) (RPL4A) [Arabidopsis Thaliana] (GB:Q9SF40); similar to 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] (TAIR:AT5G02870.1); similar to putative 60S ribosomal prot
MSGI1_26342	NODE_15005_length_410_cov_12.624391	15.4	63.6	26.3	15.1	2	0	0	2.1	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	"lipase class 3 family protein  similar to DAD1 (DEFECTIVE ANTHER DEHISCENCE 1), triacylglycerol lipase [Arabidopsis thaliana] (TAIR:AT2G44810.1); similar to lipase-like protein [Oryza sativa] (GB:CAC39051.1); similar to Os02g0653900 [Oryza sativa (japoni"
MSGI1_54847	NODE_15010_length_227_cov_7.251101	0.9	1.1	14.2	19.7	0	0	-4	-4.2	cell wall	"protein kinase family protein  similar to receptor-like protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G23310.1); similar to receptor-like protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G45860.1); similar to protein kinase, putative ["
MSGI1_54847	NODE_15010_length_227_cov_7.251101	0.9	1.1	14.2	19.7	0	0	-4	-4.2	signalling.receptor kinases.DUF 26	"protein kinase family protein  similar to receptor-like protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G23310.1); similar to receptor-like protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G45860.1); similar to protein kinase, putative ["
MSGI1_94130	NODE_15038_length_141_cov_10.241135	1.5	2.3	22.4	9.9	0	0	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_45398	NODE_15039_length_267_cov_12.981274	5.9	9.4	27.8	6.6	0	-2.1	-2.2	0	stress.biotic	"PGP11 (P-GLYCOPROTEIN 11); ATPase, coupled to transmembrane movement of substances  Identical to Multidrug resistance protein 8 (P-glycoprotein 11) (MDR8) [Arabidopsis Thaliana] (GB:Q9FWX7); similar to MDR3 (P-GLYCOPROTEIN 3) [Arabidopsis thaliana] (TAIR"
MSGI1_45398	NODE_15039_length_267_cov_12.981274	5.9	9.4	27.8	6.6	0	-2.1	-2.2	0	transport.ABC transporters and multidrug resistance systems	"PGP11 (P-GLYCOPROTEIN 11); ATPase, coupled to transmembrane movement of substances  Identical to Multidrug resistance protein 8 (P-glycoprotein 11) (MDR8) [Arabidopsis Thaliana] (GB:Q9FWX7); similar to MDR3 (P-GLYCOPROTEIN 3) [Arabidopsis thaliana] (TAIR"
MSGI1_81317	NODE_15061_length_160_cov_13.256250	2.6	4.6	17.6	3.2	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_58810	NODE_15061_length_213_cov_12.600939	15.2	1	14.7	9.1	-3.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_76859	NODE_15062_length_168_cov_45.744049	16.6	39.6	104.9	35.5	0	-1.6	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_114874	NODE_15064_length_89_cov_55.584270	89.5	62.8	38.7	43.6	0	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_83138	NODE_15069_length_157_cov_201.668793	55.8	76.8	26.1	27.2	0	0	1.1	1.5	secondary metabolism.phenylpropanoids.lignin biosynthesis.C3H	"CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3); p-coumarate 3-hydroxylase encodes coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase. Involved in lignin biosynthesis and flavonoid biosynthesis.  Also affects the biosynthesis"
MSGI1_83138	NODE_15069_length_157_cov_201.668793	55.8	76.8	26.1	27.2	0	0	1.1	1.5	misc.cytochrome P450	"CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3); p-coumarate 3-hydroxylase encodes coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase. Involved in lignin biosynthesis and flavonoid biosynthesis.  Also affects the biosynthesis"
MSGI1_10977	NODE_15082_length_725_cov_18.703447	2.5	15.9	5.2	25.1	0	2.3	0	0	transport.amino acids	"lysine and histidine specific transporter, putative  similar to LHT1 (LYSINE HISTIDINE TRANSPORTER 1), amino acid permease/ amino acid transporter [Arabidopsis thaliana] (TAIR:AT5G40780.1); similar to lysine and histidine specific transporter, putative ["
MSGI1_76331	NODE_15090_length_169_cov_12.437870	11.3	17.5	0	0	0	0	4.5	5.1	lipid metabolism.lipid degradation.beta-oxidation.acyl CoA DH	"acyl-CoA dehydrogenase-related  similar to IVD (ISOVALERYL-COA-DEHYDROGENASE) [Arabidopsis thaliana] (TAIR:AT3G45300.1); similar to Acad10 protein [Mus musculus] (GB:AAH27825.1); similar to PREDICTED: similar to acyl-Coenzyme A dehydrogenase family, memb"
MSGI1_34260	NODE_1512_length_333_cov_169.954956	0.6	1.2	598.5	1.8	0	-8.4	-10	0	not assigned.unknown	not assigned.unknown
MSGI1_35749	NODE_1513_length_322_cov_85.099380	128.4	64.6	30.2	22.3	0	0	2.1	1.5	cell wall.precursor synthesis.UGD	"UDP-glucose 6-dehydrogenase, putative  similar to ATUGD1/UGD1 (UDP-glucose dehydrogenase 1), UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G26570.1); similar to UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G29360.2); similar"
MSGI1_14183	NODE_15133_length_625_cov_21.110399	29.5	19.2	9.4	13.8	0	0	1.6	0	DNA.unspecified	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  Identical to Patellin-6 (PATL6) [Arabidopsis Thaliana] (GB:Q9SCU1;GB:Q9XFS6); similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [A
MSGI1_14183	NODE_15133_length_625_cov_21.110399	29.5	19.2	9.4	13.8	0	0	1.6	0	transport.misc	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  Identical to Patellin-6 (PATL6) [Arabidopsis Thaliana] (GB:Q9SCU1;GB:Q9XFS6); similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [A
MSGI1_36598	NODE_1514_length_316_cov_49.212025	2	8.6	19	20	0	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_69368	NODE_15140_length_184_cov_8.956522	0	0	5.3	11.4	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_28872	NODE_15153_length_381_cov_6.895013	0.4	0.5	9	19.2	0	0	0	-5.3	protein.degradation.ubiquitin.E3.DCX	DDB1A (UV-damaged DNA-binding protein 1A); DNA binding Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chro
MSGI1_28872	NODE_15153_length_381_cov_6.895013	0.4	0.5	9	19.2	0	0	0	-5.3	stress.abiotic.light	DDB1A (UV-damaged DNA-binding protein 1A); DNA binding Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chro
MSGI1_69801	NODE_15177_length_183_cov_7.918033	0.9	0.9	25.2	6.2	0	-2	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_116934	NODE_1518_length_71_cov_70.098595	33.6	23.8	4.1	16	0	0	3	0	not assigned.unknown	not assigned.unknown
MSGI1_64563	NODE_15180_length_196_cov_11.831633	0	0	25.3	18.3	0	0	-5.7	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_27681	NODE_15186_length_394_cov_10.540609	1.3	13	1.2	0.7	3.3	0	0	4.2	not assigned.unknown	not assigned.unknown
MSGI1_28227	NODE_15187_length_388_cov_41.445877	17.5	43.3	15.3	35	1.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_54557	NODE_15188_length_228_cov_15.245614	0.2	0.3	36	5	0	-2.8	-7.5	0	not assigned.unknown	not assigned.unknown
MSGI1_50007	NODE_15190_length_246_cov_22.536585	16.8	24.2	52.9	25.9	0	0	-1.7	0	protein.targeting.secretory pathway.vacuole	"vacuolar sorting receptor, putative  Identical to Vacuolar sorting receptor 7 precursor (AtVSR7) (Epidermal growth factor receptor-like protein 3) (AtELP3) (BP80-like protein f) (AtBP80f) (VSR7) [Arabidopsis Thaliana] (GB:Q8L7E3;GB:O49438); similar to va"
MSGI1_122362	NODE_1521_length_61_cov_86.540985	0.2	0.2	103.3	29.7	0	-1.8	-9	-7.2	not assigned.unknown	not assigned.unknown
MSGI1_42619	NODE_15221_length_281_cov_50.569393	17.6	32.3	0	0	0	0	5.1	6	not assigned.unknown	not assigned.unknown
MSGI1_10926	NODE_15235_length_727_cov_11.393397	16	0.1	2.5	0	-7.3	0	2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_56980	NODE_15244_length_219_cov_17.004566	12.7	41	4	23.1	1.7	2.5	0	0	Co-factor and vitamine metabolism.thiamine	Encodes ThiC involved in thiamine biosynthesis.    Translation of ThiC is regulated by a riboswitch in the 3' of untranslated region of the messenger RNA.  similar to putative thiamin biosynthesis protein [Oryza sativa] (GB:AAK26130.1); similar to thiamin
MSGI1_61702	NODE_15248_length_204_cov_10.044118	3.5	2.3	28	6	0	-2.2	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_72972	NODE_15250_length_176_cov_6.551136	0	0	14	15	0	0	-4.8	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_61339	NODE_15251_length_205_cov_46.453659	56.5	26.7	15.9	43.5	-1.1	1.5	1.8	0	tetrapyrrole synthesis.GSA	"GSA2 (GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE 2); glutamate-1-semialdehyde 2,1-aminomutase  Identical to Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplast precursor (EC 5.4.3.8) (GSA 2) (Glutamate-1-semialdehyde aminotransferase 2) (GSA-AT 2) (GSA"
MSGI1_38261	NODE_15267_length_305_cov_17.200001	32.2	32.5	63	23.9	0	-1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_122358	NODE_15276_length_61_cov_143.409836	42	59.5	0	0	0	0	6.4	6.9	not assigned.unknown	not assigned.unknown
MSGI1_101424	NODE_15278_length_132_cov_22.113636	7.8	8.4	37	43.9	0	0	-2.2	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_41089	NODE_15278_length_289_cov_12.190311	0	0	11.5	20.7	0	0	-4.5	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_46704	NODE_15280_length_261_cov_22.804598	15.7	18	82.9	22.8	0	-1.9	-2.4	0	cell.organisation	"ATG8D (autophagy gene 8-related); microtubule binding in the Arabidopsis  autophagy pathway similar to ATG8C (AUTOPHAGY 8C), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G62040.1); similar to microtubule-associated protein 1 light chain 3 [Gossypi"
MSGI1_46704	NODE_15280_length_261_cov_22.804598	15.7	18	82.9	22.8	0	-1.9	-2.4	0	protein.degradation.autophagy	"ATG8D (autophagy gene 8-related); microtubule binding in the Arabidopsis  autophagy pathway similar to ATG8C (AUTOPHAGY 8C), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G62040.1); similar to microtubule-associated protein 1 light chain 3 [Gossypi"
MSGI1_44926	NODE_15282_length_269_cov_167.208176	20.5	65.6	13.2	22.1	1.7	0	0	1.6	RNA.regulation of transcription.unclassified	"MIF2 (MINI ZINC FINGER 2); DNA binding  similar to MIF1 (MINI ZINC FINGER 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G74660.1); similar to Os11g0128300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065634.1); similar to Z"
MSGI1_43148	NODE_15283_length_278_cov_11.607914	12.8	13.2	0.4	0.3	0	0	5	5.5	not assigned.unknown	not assigned.unknown
MSGI1_47319	NODE_15292_length_258_cov_18.042635	23.8	13.3	23.1	38.4	0	0	0	-1.5	protein.synthesis.misc ribososomal protein	40S ribosomal protein S17 (RPS17C)  Identical to 40S ribosomal protein S17-3 (RPS17C) [Arabidopsis Thaliana] (GB:Q9SQZ1); similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G05220.2); similar to 40S ribosomal protein S17-like pr
MSGI1_72028	NODE_15308_length_178_cov_2.505618	1.3	2.9	3.5	25.4	0	2.9	0	-3.1	major CHO metabolism.synthesis.starch.AGPase	"APL3 (large subunit of AGP 3) Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isof"
MSGI1_20959	NODE_1532_length_485_cov_312.548462	215.5	78.3	86.4	150.8	-1.5	0	1.3	0	PS.calvin cyle.phosphoglycerate kinase	"phosphoglycerate kinase, putative  similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2); similar to PGK1 (PHOSPHOGLYCERATE KINASE 1), phosphoglycerate kinase [Arabidopsis thaliana] (TAIR:AT3G12780.1); similar to chloroplast"
MSGI1_82491	NODE_15325_length_158_cov_18.632912	22.6	10.5	4.9	4.6	0	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_106921	NODE_15330_length_126_cov_11.412699	5.2	12.5	26.5	11.8	0	0	-2.3	0	cell.organisation	ATPP2-B2 (Phloem protein 2-B2)  similar to MEE66 (maternal effect embryo arrest 66) [Arabidopsis thaliana] (TAIR:AT2G02240.1); similar to Os02g0813300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048484.1); similar to F-box domain containing protei
MSGI1_106921	NODE_15330_length_126_cov_11.412699	5.2	12.5	26.5	11.8	0	0	-2.3	0	protein.degradation.ubiquitin.E3.SCF.FBOX	ATPP2-B2 (Phloem protein 2-B2)  similar to MEE66 (maternal effect embryo arrest 66) [Arabidopsis thaliana] (TAIR:AT2G02240.1); similar to Os02g0813300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048484.1); similar to F-box domain containing protei
MSGI1_122357	NODE_15339_length_61_cov_8.721312	0	0	13.2	11.9	0	0	-4.7	-4.6	protein.degradation.ubiquitin.E3.RING	protein binding / zinc ion binding  similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G32670.1); similar to zinc finger (C3HC4-type RING finger)protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD37529.1); similar to
MSGI1_94129	NODE_1534_length_141_cov_12.900709	0	0	25.3	78.2	0	1.6	-5.7	-7.3	not assigned.unknown	not assigned.unknown
MSGI1_95648	NODE_15342_length_139_cov_27.028776	23.3	15	3.6	6.3	0	0	2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_64562	NODE_15348_length_196_cov_26.892857	8.3	23.7	29.6	28.4	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_91846	NODE_15357_length_144_cov_19.402779	12.3	7.2	23.7	33	0	0	0	-2.2	hormone metabolism.brassinosteroid.synthesis-degradation.sterols.CYP51	"CYP51G1 (CYTOCHROME P450 51); oxygen binding putative obtusifoliol 14-alpha demethylase involved in sterol biosynthesis. similar to CYP707A3 (cytochrome P450, family 707, subfamily A, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G45340."
MSGI1_77317	NODE_15359_length_167_cov_27.149700	29.7	2.5	3.6	2.6	-3.6	0	3	0	not assigned.unknown	not assigned.unknown
MSGI1_94128	NODE_15365_length_141_cov_5.709220	0.6	4	12	4	0	0	-4.3	0	not assigned.unknown	not assigned.unknown
MSGI1_81866	NODE_15372_length_159_cov_7.937107	1.8	1.6	27.4	17.6	0	0	-3.9	-3.5	not assigned.unknown	not assigned.unknown
MSGI1_85632	NODE_15394_length_153_cov_9.352942	2.8	19.2	9.8	8.9	2.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_69800	NODE_1540_length_183_cov_43.475410	14.3	46.4	0	0.2	1.7	0	4.8	7.9	not assigned.unknown	not assigned.unknown
MSGI1_64561	NODE_15404_length_196_cov_17.755102	5	7.1	24.5	18.1	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_98807	NODE_15406_length_135_cov_9.162963	6.8	7.8	17.8	37.1	0	0	0	-2.2	major CHO metabolism.synthesis.starch.starch synthase	"glycogen synthase, putative  similar to SSI (STARCH SYNTHASE I), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G24300.1); similar to starch synthase II [Amaranthus cruentus] (GB:ABA64552.1); similar to granule bound starch syn"
MSGI1_12526	NODE_1542_length_673_cov_62.468052	45	26.9	0.1	0	0	0	8.8	5.7	not assigned.unknown	not assigned.unknown
MSGI1_78955	NODE_15431_length_164_cov_16.731707	5.5	2.6	9.9	16.5	0	0	0	-2.7	not assigned.unknown	not assigned.unknown
MSGI1_108918	NODE_15436_length_124_cov_11.314516	0.1	0.2	23.4	8.1	0	0	-7.9	0	not assigned.unknown	not assigned.unknown
MSGI1_81315	NODE_15442_length_160_cov_12.856250	4.2	4	20.9	22	0	0	-2.3	-2.5	gluconeogenese/ glyoxylate cycle.citrate synthase	"CSY2 (CITRATE SYNTHASE 2); citrate (SI)-synthase Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development. Identical to Citrate synthase 2, peroxisomal precursor (EC 2.3.3.1) (CSY2) [Arabidopsis Thaliana] (GB:Q9L"
MSGI1_122355	NODE_15447_length_61_cov_10.426229	0	0	14.4	16.1	0	0	-4.8	-5	not assigned.unknown	not assigned.unknown
MSGI1_41417	NODE_15451_length_287_cov_12.982578	16.2	15.8	53.7	31.1	0	0	-1.7	0	misc.UDP glucosyl and glucoronyl transferases	"glycosyl transferase-related  similar to EMB2745 (EMBRYO DEFECTIVE 2745), binding [Arabidopsis thaliana] (TAIR:AT5G39710.1); similar to Glycosyltransferase sugar-binding re (GB:ABC75355.1); similar to Os11g0607100 [Oryza sativa (japonica cultivar-group)]"
MSGI1_78429	NODE_15455_length_165_cov_7.218182	0.8	2	18.1	4.9	0	0	-4.5	0	misc.cytochrome P450	"CYP71B9 (cytochrome P450, family 71, subfamily B, polypeptide 9); oxygen binding member of CYP71B Identical to Cytochrome P450 71B9 (EC 1.14.-.-) (CYP71B9) [Arabidopsis Thaliana] (GB:O64718;GB:Q8VYE9); similar to CYP71B36 (cytochrome P450, family 71, sub"
MSGI1_38891	NODE_15469_length_301_cov_49.235882	29.6	17	4.8	5.1	0	0	2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_56979	NODE_15470_length_219_cov_4.639269	5.8	12	25.8	9.8	0	0	-2.2	0	transport.nucleotides	"ATPUP10 (Arabidopsis thaliana purine permease 10); purine transporter Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane."
MSGI1_58484	NODE_1548_length_214_cov_5.528038	6	9.5	28.1	12.2	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_87009	NODE_15480_length_151_cov_27.523178	4.9	2	50.2	0.5	0	-6.6	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_115001	NODE_15480_length_88_cov_61.772728	28	29.3	108.3	60.1	0	0	-2	-1	redox.ascorbate and glutathione	"ATMDAR1 (MONODEHYDROASCORBATE REDUCTASE 1); monodehydroascorbate reductase (NADH) Encodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2 Identical to Probable monodehydroascorbate reduct"
MSGI1_64192	NODE_1549_length_197_cov_229.299500	61.9	27	20.5	16.1	-1.2	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_122353	NODE_15492_length_61_cov_55.721310	33.6	40.6	11.6	25.1	0	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_68502	NODE_15493_length_186_cov_144.387100	95.9	1.6	3.9	5.7	-5.9	0	4.6	0	cell wall.degradation.pectate lyases and polygalacturonases	"PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding polygalacturonase inhibiting protein 1 (PGIP1) mRNA, Identical to Polygalacturonase inhibitor 1 precursor (Polygalacturonase-inhibiting protein) (PGIP-1) (PGIP1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_59123	NODE_15495_length_212_cov_53.886791	31	24.8	10.1	10.6	0	0	1.6	0	cell. vesicle transport	clathrin adaptor complexes medium subunit-related  similar to delta-COP [Zea mays] (GB:AAF67098.1); similar to Os05g0310800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055159.1); similar to Os05g0311000 [Oryza sativa (japonica cultivar-group)] (GB
MSGI1_97181	NODE_15499_length_137_cov_14.145986	0	0	13.2	28.6	0	0	-4.7	-5.8	not assigned.unknown	not assigned.unknown
MSGI1_34824	NODE_1550_length_329_cov_228.987839	46.5	21.3	24	63.3	0	1.4	0	-1.6	cell wall.modification	"ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thali"
MSGI1_33971	NODE_15500_length_335_cov_95.417908	60.1	68.7	25.2	37.1	0	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_23033	NODE_15512_length_456_cov_14.162281	6.7	30.9	15.3	21	2.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_111956	NODE_15517_length_114_cov_37.771931	34.4	40.3	10	13.2	0	0	1.8	1.6	protein.targeting.chloroplast	"chloroplast thylakoidal processing peptidase  similar to signal peptidase, putative [Arabidopsis thaliana] (TAIR:AT1G06870.1); similar to chloroplast thylakoidal processing peptidase [Medicago sativa] (GB:AAZ32902.1); similar to Os09g0453400 [Oryza sativ"
MSGI1_112971	NODE_1552_length_106_cov_116.641510	88.9	48.6	14.3	21.4	0	0	2.6	0	protein.synthesis.misc ribososomal protein	"RPL16B (ribosomal protein L16B); structural constituent of ribosome encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root and shoot apical meristems and in lateral root primordia. Expr"
MSGI1_93299	NODE_15520_length_142_cov_18.345070	3.2	16.7	6.7	26.4	0	2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_37977	NODE_15530_length_307_cov_12.726384	0.1	0.1	33.3	0.1	0	-8.4	-8.4	0	not assigned.unknown	not assigned.unknown
MSGI1_66028	NODE_15535_length_192_cov_16.354166	12.7	42.3	21.5	32.1	1.7	0	0	0	transporter.sugars.sucrose	ATSUC7 (SUCROSE-PROTON SYMPORTER 7); carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter  Identical to Probable sucrose transport protein SUC7 (Sucrose permease 7) (Sucrose- proton symporter 7) (SUC7) [Arabidopsis Thaliana] (GB:Q67YF8;GB:Q
MSGI1_111576	NODE_1554_length_117_cov_44.931625	16.1	16.3	68.3	71.9	0	0	-2.1	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_122350	NODE_1554_length_61_cov_159.262299	73.1	41.2	18	17.7	0	0	2	0	protein.synthesis.misc ribososomal protein	"RPL16B (ribosomal protein L16B); structural constituent of ribosome encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root and shoot apical meristems and in lateral root primordia. Expr"
MSGI1_38621	NODE_15546_length_303_cov_27.221123	9	17.4	0.3	2.3	0	0	0	2.9	not assigned.unknown	not assigned.unknown
MSGI1_81314	NODE_15551_length_160_cov_12.781250	34.2	66.3	12.3	15.7	0	0	1.5	2.1	not assigned.unknown	not assigned.unknown
MSGI1_95647	NODE_15572_length_139_cov_15.266187	6.7	2.2	33.5	3.8	0	-3.1	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_113355	NODE_15577_length_103_cov_6.699029	5.4	16.2	0.3	0.3	0	0	0	5.8	amino acid metabolism.synthesis.aromatic aa.phenylalanine.arogenate dehydratase / prephenate dehydratase	prephenate dehydratase family protein  similar to prephenate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT3G44720.1); similar to prephenate dehydratase [Ipomoea trifida] (GB:AAS79603.1); contains InterPro domain Prephenate dehydratase; (Inter
MSGI1_122348	NODE_15587_length_61_cov_156.409836	67.7	43	164.8	129.3	0	0	-1.3	-1.6	PS.calvin cyle.PRK	"PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding  Identical to Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19) (Phosphopentokinase) (PRKase) (PRK) [Arabidopsis Thaliana] (GB:P25697); similar to uracil phosphoribosylt"
MSGI1_19973	NODE_15596_length_505_cov_11.938614	7.4	44.7	37	12.3	2.6	-1.6	-2.3	1.9	RNA.regulation of transcription.GRAS transcription factor family	PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1); transcription factor Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway. similar to SCL21 (SCARECROW-LIKE 21
MSGI1_19973	NODE_15596_length_505_cov_11.938614	7.4	44.7	37	12.3	2.6	-1.6	-2.3	1.9	signalling.light	PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1); transcription factor Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway. similar to SCL21 (SCARECROW-LIKE 21
MSGI1_52718	NODE_15606_length_235_cov_8.923405	0	0	11.3	13.9	0	0	-4.5	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_73905	NODE_15607_length_174_cov_7.632184	11.1	27.9	0.2	0	0	0	5.8	5.8	not assigned.unknown	not assigned.unknown
MSGI1_98043	NODE_15616_length_136_cov_11.764706	0	0	21	9.2	0	0	-5.4	0	signalling.receptor kinases.leucine rich repeat VIII-2	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G53430.1); similar to leucine-rich repeat family protein / protein kinase family pro"
MSGI1_122347	NODE_15618_length_61_cov_29.721312	18.5	11	3.2	4.9	0	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_122346	NODE_15622_length_61_cov_46.754097	26.7	13.3	6	7	0	0	2.2	0	cell.organisation	TUB3 (Tubulin beta-3); structural molecule encodes tubulin beta-2/beta-3 chain Identical to Tubulin beta-2/beta-3 chain (TUBB3) [Arabidopsis Thaliana] (GB:P29512); similar to TUB7 (tubulin beta-7 chain) [Arabidopsis thaliana] (TAIR:AT2G29550.1); similar
MSGI1_115854	NODE_15627_length_80_cov_72.787498	55.9	65.1	13.5	23.9	0	0	2	1.4	cell wall.precursor synthesis.NDP sugar pyrophosphorylase.GDP mannose	"CYT1 (CYTOKINESIS DEFECTIVE 1); nucleotidyltransferase Encodes a GDP-mannose pyrophosphorylase/ mannose-1-pyrophosphatase. This enzyme provides GDP-mannose, which is used for cell wall carbohydrate biosynthesis and protein glycosylation as well as for as"
MSGI1_61336	NODE_15628_length_205_cov_63.156097	29.7	40.8	5.8	8.1	0	0	2.4	2.3	misc.plastocyanin-like	ARPN (PLANTACYANIN); copper ion binding Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil. Identical to Putative basic blue protein precursor (Plantacyanin)
MSGI1_61336	NODE_15628_length_205_cov_63.156097	29.7	40.8	5.8	8.1	0	0	2.4	2.3	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_73904	NODE_15631_length_174_cov_39.988506	43.8	29.6	64.6	10.7	0	-2.6	0	0	major CHO metabolism.degradation.starch.starch cleavage	"BMY7/TR-BAMY (beta-amylase 7); beta-amylase  similar to CT-BMY (BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to beta-amylase 1 [Nicotiana langsdorffii x Nicotiana sanderae] (GB:AAY89374.1); similar to putative chloropl"
MSGI1_113711	NODE_15650_length_100_cov_31.049999	2.5	1.1	47.9	3.8	0	-3.7	-4.3	0	minor CHO metabolism.raffinose family.raffinose synthases.known	"SIP1 (SEED IMBIBITION 1-LIKE); galactinol-sucrose galactosyltransferase/ hydrolase, hydrolyzing O-glycosyl compounds Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount o"
MSGI1_122342	NODE_15657_length_61_cov_194.622955	101.8	182.5	63.4	175.4	0	1.5	0	0	amino acid metabolism.synthesis.aromatic aa.chorismate.3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	"2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative  similar to DHS2 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE), 3-deoxy-7-phosphoheptulonate syntha"
MSGI1_22496	NODE_15664_length_463_cov_32.676025	35	42.4	99.1	34.4	0	-1.5	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_44924	NODE_15667_length_269_cov_57.706318	35.8	38.1	82.7	55.8	0	0	-1.2	0	development.late embryogenesis abundant	late embryogenesis abundant family protein / LEA family protein  similar to LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) [Arabidopsis thaliana] (TAIR:AT1G01470.1); similar to Os03g0843300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051862.1); similar to
MSGI1_67657	NODE_15670_length_188_cov_29.787233	32.5	55.6	26.5	67.1	0	1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_114688	NODE_15676_length_91_cov_117.714287	0.9	0.4	171.6	1.7	0	-6.7	-7.6	0	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	"protein phosphatase 2C, putative / PP2C, putative  similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT1G07430.1); similar to protein phosphatase 2C [Nicotiana tabacum] (GB:CAC10358.1); contains InterPro domain Pro"
MSGI1_61335	NODE_15677_length_205_cov_47.409756	43.8	26.9	51.3	12.8	0	-2	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	PAL1 (PHE AMMONIA LYASE 1); phenylalanine ammonia-lyase encodes a protein similar to phenylalanine ammonia-lyase Identical to Phenylalanine ammonia-lyase 1 (EC 4.3.1.5) (PAL1) [Arabidopsis Thaliana] (GB:P35510;GB:Q94AN1;GB:Q9ZQD6); similar to PAL2 (pheny
MSGI1_117877	NODE_15686_length_64_cov_28.328125	18.2	15.3	31.2	48.2	0	0	0	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_110946	NODE_15696_length_122_cov_10.106558	1.7	0.8	22.5	41.9	0	0	-3.7	-5.7	not assigned.unknown	not assigned.unknown
MSGI1_60357	NODE_15706_length_208_cov_76.625000	46.7	16.7	23.8	11.2	-1.5	0	0	0	cell wall	SLP3 (Subtilisin-like serine protease 3); subtilase Encodes a novel subtilisin-like serine protease. similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G30020.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530
MSGI1_60357	NODE_15706_length_208_cov_76.625000	46.7	16.7	23.8	11.2	-1.5	0	0	0	protein.degradation.subtilases	SLP3 (Subtilisin-like serine protease 3); subtilase Encodes a novel subtilisin-like serine protease. similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G30020.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530
MSGI1_107897	NODE_15708_length_125_cov_26.832001	24.5	12.2	0	0.3	0	0	5.6	5.3	not assigned.unknown	not assigned.unknown
MSGI1_108915	NODE_1571_length_124_cov_11.983871	0	3.7	1.6	33.3	0	4.4	0	-3.2	not assigned.unknown	not assigned.unknown
MSGI1_103171	NODE_15716_length_130_cov_18.576923	7	0.6	22.1	0.8	0	-4.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_35748	NODE_15719_length_322_cov_16.717392	20.6	15.3	3.3	4.2	0	0	2.6	0	nucleotide metabolism.synthesis.pyrimidine.CTP synthetase	"CTP synthase, putative / UTP--ammonia ligase, putative  similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT2G34890.1); similar to EMB2742 (EMBRYO DEFECTIVE 2742), CTP synthase [Arabidopsis thaliana] (TAIR:AT3"
MSGI1_111479	NODE_15721_length_118_cov_79.915253	65.9	67	11.2	25.9	0	0	2.6	1.4	stress.biotic	"pathogenesis-related protein, putative  similar to allergen V5/Tpx-1-related family protein [Arabidopsis thaliana] (TAIR:AT5G57625.1); similar to Allergen V5/Tpx-1 related [Medicago truncatula] (GB:ABE83411.1); contains InterPro domain Ves allergen; (Int"
MSGI1_15207	NODE_15729_length_598_cov_14.431438	15.3	10.1	58.6	12.3	0	-2.3	-1.9	0	amino acid metabolism.degradation.glutamate family.proline	ALDH12A1 (Aldehyde dehydrogenase 12A1); 1-pyrroline-5-carboxylate dehydrogenase/ 3-chloroallyl aldehyde dehydrogenase Encodes mitochondrial Delta-pyrroline-5-  carboxylate dehydrogenase. Involved in the catabolism of proline to glutamate. Involved in pro
MSGI1_104971	NODE_15737_length_128_cov_5.085938	3.2	15.5	0	0	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_36446	NODE_15738_length_317_cov_28.082020	2	3.7	15.9	3.4	0	0	-3	0	hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate synthase	"ACS2 (1-Amino-cyclopropane-1-carboxylate synthase 2) a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family,  isolated from a flower-specific cDNA library. Identical t"
MSGI1_27767	NODE_15747_length_393_cov_11.455471	2.2	1.1	3.1	30.5	0	3.3	0	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_59394	NODE_15749_length_211_cov_4.710900	0	0	14.6	7	0	0	-4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_25448	NODE_15755_length_421_cov_30.617577	20.2	13.2	49.9	17.9	0	-1.5	-1.3	0	cell wall.degradation.pectate lyases and polygalacturonases	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT4G23500.1); similar to Glycoside hydrolas
MSGI1_78427	NODE_15759_length_165_cov_44.448486	18.4	0.1	8	0.4	-7.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_117091	NODE_1576_length_70_cov_1623.528564	0	0.2	16.7	1.2	0	-3.8	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_108914	NODE_15768_length_124_cov_21.080645	19	12.9	1.3	0.5	0	0	3.9	4.7	stress.biotic	"transferase family protein  similar to CHAT (ACETYL COA:(Z)-3-HEXEN-1-OL ACETYLTRANSFERASE), acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase [Arabidopsis thaliana] (TAIR:AT3G03480.1); similar to benzoyl coenzyme A: benzyl alcohol benzoyl transferase [Petun"
MSGI1_101421	NODE_15769_length_132_cov_62.606060	10.2	75.8	114	8.6	2.9	-3.7	-3.5	3.1	not assigned.unknown	not assigned.unknown
MSGI1_18758	NODE_15773_length_526_cov_22.977186	15.9	17.2	24.4	6	0	-2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_88301	NODE_15774_length_149_cov_26.087248	2.8	18.3	28.7	19.4	2.7	0	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_33054	NODE_15783_length_342_cov_42.801170	34.6	11.7	6.5	4.2	-1.6	0	2.4	0	stress.abiotic.drought/salt	dehydration-responsive protein-related  similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G14430.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT3G23300.1); similar to dehydration-respo
MSGI1_108913	NODE_15784_length_124_cov_58.419353	18.9	5.8	0.5	0.5	0	0	5.2	0	cell wall	dehydration-responsive protein-related  similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G04430.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G14430.1); similar to dehydration-respo
MSGI1_108913	NODE_15784_length_124_cov_58.419353	18.9	5.8	0.5	0.5	0	0	5.2	0	stress.abiotic.drought/salt	dehydration-responsive protein-related  similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G04430.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G14430.1); similar to dehydration-respo
MSGI1_63475	NODE_15786_length_199_cov_71.180908	44.8	0.8	82.1	59.7	-5.8	0	0	-6.2	not assigned.unknown	not assigned.unknown
MSGI1_54286	NODE_15798_length_229_cov_11.698690	8	16.8	1.2	2.1	0	0	0	3	not assigned.unknown	not assigned.unknown
MSGI1_54845	NODE_15800_length_227_cov_31.797358	27.8	5.4	10.5	4.2	-2.4	0	0	0	cell wall.degradation.pectate lyases and polygalacturonases	pectate lyase family protein  Identical to Probable pectate lyase 1 precursor (EC 4.2.2.2) (Pectate lyase A1) [Arabidopsis Thaliana] (GB:Q940Q1;GB:O23017;GB:O23666); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G48900.1); simil
MSGI1_96435	NODE_15806_length_138_cov_99.268112	37.4	36.5	4.1	21.9	0	2.4	3.2	0	stress.biotic	"transferase family protein  similar to CHAT (ACETYL COA:(Z)-3-HEXEN-1-OL ACETYLTRANSFERASE), acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase [Arabidopsis thaliana] (TAIR:AT3G03480.1); similar to benzoyl coenzyme A: benzyl alcohol benzoyl transferase [Petun"
MSGI1_114778	NODE_15808_length_90_cov_15.166667	4.7	4.1	29.4	12.3	0	0	-2.6	0	transport.peptides and oligopeptides	ATPTR2-B (NITRATE TRANSPORTER 1); transporter Encodes a peptide transport gene that mediates the transport of di- and tripeptides. Identical to Peptide transporter PTR2 (Histidine-transporting protein) (PTR2) [Arabidopsis Thaliana] (GB:P46032); similar t
MSGI1_114778	NODE_15808_length_90_cov_15.166667	4.7	4.1	29.4	12.3	0	0	-2.6	0	transport.amino acids	ATPTR2-B (NITRATE TRANSPORTER 1); transporter Encodes a peptide transport gene that mediates the transport of di- and tripeptides. Identical to Peptide transporter PTR2 (Histidine-transporting protein) (PTR2) [Arabidopsis Thaliana] (GB:P46032); similar t
MSGI1_34257	NODE_15820_length_333_cov_11.516517	2	3	18.3	2.4	0	-2.9	-3.2	0	RNA.regulation of transcription.NAC domain transcription factor family	ANAC074 (Arabidopsis NAC domain containing protein 74); transcription factor  similar to no apical meristem (NAM) family protein [Arabidopsis thaliana] (TAIR:AT2G24430.2); similar to salicylic acid-induced protein 19 [Capsicum annuum] (GB:AAQ75123.1); sim
MSGI1_34257	NODE_15820_length_333_cov_11.516517	2	3	18.3	2.4	0	-2.9	-3.2	0	development.unspecified	ANAC074 (Arabidopsis NAC domain containing protein 74); transcription factor  similar to no apical meristem (NAM) family protein [Arabidopsis thaliana] (TAIR:AT2G24430.2); similar to salicylic acid-induced protein 19 [Capsicum annuum] (GB:AAQ75123.1); sim
MSGI1_34257	NODE_15820_length_333_cov_11.516517	2	3	18.3	2.4	0	-2.9	-3.2	0	cell wall	ANAC074 (Arabidopsis NAC domain containing protein 74); transcription factor  similar to no apical meristem (NAM) family protein [Arabidopsis thaliana] (TAIR:AT2G24430.2); similar to salicylic acid-induced protein 19 [Capsicum annuum] (GB:AAQ75123.1); sim
MSGI1_34257	NODE_15820_length_333_cov_11.516517	2	3	18.3	2.4	0	-2.9	-3.2	0	cell wall	ANAC074 (Arabidopsis NAC domain containing protein 74); transcription factor  similar to no apical meristem (NAM) family protein [Arabidopsis thaliana] (TAIR:AT2G24430.2); similar to salicylic acid-induced protein 19 [Capsicum annuum] (GB:AAQ75123.1); sim
MSGI1_37976	NODE_15822_length_307_cov_102.736153	120.9	41.2	40.8	191.9	-1.6	2.2	1.6	-2.2	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_21105	NODE_15825_length_483_cov_13.824017	7.7	2.2	24.9	2.1	0	-3.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_32782	NODE_15836_length_344_cov_48.156979	63.4	48.9	104.2	47.6	0	-1.1	0	0	"lipid metabolism.'exotics' (steroids, squalene etc).sphingolipids"	"delta-8 sphingolipid desaturase, putative  similar to delta-8 sphingolipid desaturase (SLD1) [Arabidopsis thaliana] (TAIR:AT3G61580.1); similar to Fatty acid desaturase, putative [Medicago truncatula] (GB:ABE90798.1); similar to delta-8 sphingolipid desa"
MSGI1_100502	NODE_15840_length_133_cov_13.827067	15.3	3.2	0.3	0	0	0	5.7	0	not assigned.unknown	not assigned.unknown
MSGI1_32116	NODE_15845_length_350_cov_12.800000	2.8	0.6	35.1	4	0	-3.1	-3.6	0	redox.glutaredoxins	glutaredoxin family protein  Identical to Monothiol glutaredoxin-S6 (AtGrxS6) (GRXS6) [Arabidopsis Thaliana] (GB:Q9LYC8); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT1G03020.1); similar to Fgenesh protein 66 [Beta vulgaris] (GB:
MSGI1_75822	NODE_15850_length_170_cov_7.076470	4.1	9.9	338.6	20.4	0	-4.1	-6.4	0	not assigned.unknown	not assigned.unknown
MSGI1_113710	NODE_15851_length_100_cov_37.310001	30	52.4	16.7	21.6	0	0	0	1.3	not assigned.unknown	not assigned.unknown
MSGI1_116424	NODE_15854_length_75_cov_26.613333	19.6	1.1	2.5	0.7	-4.2	0	3	0	not assigned.unknown	not assigned.unknown
MSGI1_61701	NODE_15856_length_204_cov_11.671569	7.8	4.4	14.8	20.8	0	0	0	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_91123	NODE_15858_length_145_cov_23.034483	1.8	3.2	45.8	63.1	0	0	-4.7	-4.3	not assigned.unknown	not assigned.unknown
MSGI1_18709	NODE_15861_length_527_cov_80.690704	31.9	18.3	10.8	14.3	0	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_12967	NODE_15865_length_659_cov_33.905918	38.8	6.1	8.3	5.8	-2.7	0	2.2	0	lipid metabolism.FA synthesis and FA elongation.ACP protein	ACP4 (ACYL CARRIER PROTEIN 4) encodes an acyl carrier protein predominantly expressed in leaves. Gene expression is upregulated by light. similar to ACP1 (ACYL CARRIER PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G05020.1); similar to acyl carrier protein [
MSGI1_63472	NODE_15871_length_199_cov_10.969850	0	0	17.5	24.8	0	0	-5.1	-5.6	glycolysis.pyrophosphate-fructose-6-P phosphotransferase	"pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related  similar to pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phospho"
MSGI1_25401	NODE_15876_length_422_cov_60.665878	47	6	13.9	9.8	-3	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_85629	NODE_1588_length_153_cov_63.758171	61.5	47.8	15.9	54.6	0	1.8	2	0	cell wall.pectin*esterases.PME	pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT2G47550.1); similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT4G02330.1); similar to papillar cell-specific pectin methylesterase
MSGI1_73903	NODE_1588_length_174_cov_17.189655	0.5	1.3	37.5	1.1	0	-5.1	-6.2	0	not assigned.unknown	not assigned.unknown
MSGI1_70253	NODE_15880_length_182_cov_6.857143	2	1.8	18	1.9	0	-3.2	-3.2	0	misc.UDP glucosyl and glucoronyl transferases	UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT4G15280.1); similar to glucosyltransferase [Nicotiana tabacum] (GB:BAB60720.1); contains InterPro
MSGI1_30212	NODE_15881_length_367_cov_37.490463	14	42.9	2.8	3.9	1.6	0	0	3.5	"misc.oxidases - copper, flavone etc."	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_70685	NODE_15885_length_181_cov_10.707182	14	41.8	28.8	37	1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_47317	NODE_15894_length_258_cov_16.581396	27.6	17	8.5	12.2	0	0	1.7	0	stress.abiotic.drought/salt	dehydration-responsive family protein  similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G06050.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G77260.1); similar to dehydration-respon
MSGI1_41415	NODE_15895_length_287_cov_42.975609	31.4	47.6	3.2	3.2	0	0	3.3	3.9	protein.folding	ATTCP-1 (Arabidopsis thaliana T-complex protein 1 alpha subunit); ATP binding / protein binding / unfolded protein binding Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). Identical to T-complex protein
MSGI1_51936	NODE_15904_length_238_cov_23.407562	24.2	27.2	2.9	1.2	0	0	3.1	4.5	signalling.G-proteins	"ATGB2 (GTP-BINDING 2); GTP binding GTP-binding protein ATGB2 similar to AT-RAB2 (Arabidopsis Rab GTPase homolog B1c), GTP binding [Arabidopsis thaliana] (TAIR:AT4G17170.1); similar to small GTP-binding protein [Carica papaya] (GB:BAA88497.1); contains In"
MSGI1_113508	NODE_15905_length_102_cov_22.294117	22.8	3.1	0	0	-2.9	0	5.5	0	cell wall.modification	"ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to E"
MSGI1_94122	NODE_15908_length_141_cov_16.283688	27.6	29.9	34.2	6.2	0	-2.5	0	2.3	not assigned.unknown	not assigned.unknown
MSGI1_38749	NODE_15909_length_302_cov_125.059601	131.8	124.6	1.3	6.7	0	0	6.7	4.2	stress.abiotic.unspecified	allergen V5/Tpx-1-related family protein  similar to allergen V5/Tpx-1-related family protein [Arabidopsis thaliana] (TAIR:AT5G57625.1); similar to Pathogenesis-related protein PR-1 precursor (GB:Q40374); contains InterPro domain Ves allergen; (InterPro:I
MSGI1_115207	NODE_15918_length_86_cov_60.860466	25.9	4	18.6	12.7	-2.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_30956	NODE_1593_length_360_cov_140.347229	93.6	47.8	24.6	65.9	0	1.4	1.9	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L7A (RPL7aB)  Identical to 60S ribosomal protein L7a-2 (RPL7AB) [Arabidopsis Thaliana] (GB:Q9LZH9); similar to 60S ribosomal protein L7A (RPL7aA) [Arabidopsis thaliana] (TAIR:AT2G47610.1); similar to 60S ribosomal protein L7A-like pr
MSGI1_81312	NODE_15933_length_160_cov_50.581249	54.1	40.6	10.3	23.9	0	0	2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_16235	NODE_15954_length_573_cov_12.966841	19.3	0.7	3.7	0.4	-4.8	0	2.4	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_16235	NODE_15954_length_573_cov_12.966841	19.3	0.7	3.7	0.4	-4.8	0	2.4	0	secondary metabolism.flavonoids.flavonols	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT5G20400.1); similar to ethylene-forming-enzyme-like dioxygenase [Prunus armeniaca] (GB:AAB88878.1); contain"
MSGI1_53772	NODE_15957_length_231_cov_43.701298	34.1	73.1	26.8	56.8	1.1	1.1	0	0	cell.cycle	ROC3 (rotamase CyP 3); peptidyl-prolyl cis-trans isomerase Encodes cytosolic cyclophilin ROC3. Identical to Peptidyl-prolyl cis-trans isomerase CYP19-1 (EC 5.2.1.8) (PPIase CYP19-1) (Rotamase cyclophilin-3) (Cyclophilin of 19 kDa 1) (CYP19-1) [Arabidopsi
MSGI1_53772	NODE_15957_length_231_cov_43.701298	34.1	73.1	26.8	56.8	1.1	1.1	0	0	misc.misc2	ROC3 (rotamase CyP 3); peptidyl-prolyl cis-trans isomerase Encodes cytosolic cyclophilin ROC3. Identical to Peptidyl-prolyl cis-trans isomerase CYP19-1 (EC 5.2.1.8) (PPIase CYP19-1) (Rotamase cyclophilin-3) (Cyclophilin of 19 kDa 1) (CYP19-1) [Arabidopsi
MSGI1_49738	NODE_15958_length_247_cov_55.692307	15.4	8.7	46.6	2.9	0	-4	-1.6	0	protein.degradation.cysteine protease	"cysteine proteinase, putative  similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G48350.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (Int"
MSGI1_36055	NODE_15961_length_320_cov_8.375000	11.9	0.1	0.8	0.7	-6.9	0	3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_56977	NODE_15964_length_219_cov_129.648407	76.1	35.3	24.1	28.6	-1.1	0	1.7	0	protein.synthesis.misc ribososomal protein	"RPS18C (S18 RIBOSOMAL PROTEIN); structural constituent of ribosome encodes a ribosomal protein S18C, a constituent of the small subunit of the ribosomal complex Identical to 40S ribosomal protein S18 (RPS18C) [Arabidopsis Thaliana] (GB:P34788;GB:Q94K22);"
MSGI1_39647	NODE_15965_length_297_cov_16.047138	11.4	14.7	43.1	22.1	0	0	-1.9	0	secondary metabolism.N misc.alkaloid-like	"FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to EDA28/MEE23 (embryo sac development arrest 28, maternal effect embryo arrest 23), electron carrier [Arabidopsis"
MSGI1_39647	NODE_15965_length_297_cov_16.047138	11.4	14.7	43.1	22.1	0	0	-1.9	0	cell wall	"FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to EDA28/MEE23 (embryo sac development arrest 28, maternal effect embryo arrest 23), electron carrier [Arabidopsis"
MSGI1_39647	NODE_15965_length_297_cov_16.047138	11.4	14.7	43.1	22.1	0	0	-1.9	0	cell wall	"FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to EDA28/MEE23 (embryo sac development arrest 28, maternal effect embryo arrest 23), electron carrier [Arabidopsis"
MSGI1_39647	NODE_15965_length_297_cov_16.047138	11.4	14.7	43.1	22.1	0	0	-1.9	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to EDA28/MEE23 (embryo sac development arrest 28, maternal effect embryo arrest 23), electron carrier [Arabidopsis"
MSGI1_113354	NODE_15969_length_103_cov_129.679611	107.6	37.7	12.8	4	-1.5	0	3.1	3.2	not assigned.unknown	not assigned.unknown
MSGI1_12586	NODE_1597_length_671_cov_54.256332	29.4	13.5	9.2	6.3	0	0	1.7	0	cell wall.pectin*esterases.PME	ATPME1 (Arabidopsis thaliana pectin methylesterase 1); pectinesterase encodes a pectin methylesterase Identical to Pectinesterase-1 precursor (EC 3.1.1.11) (Pectin methylesterase 1) (PE 1) (PME1) [Arabidopsis Thaliana] (GB:Q43867); similar to pectinester
MSGI1_93295	NODE_15974_length_142_cov_89.316902	81.1	34	21.8	48.2	-1.3	1.1	1.9	0	PS.calvin cyle.rubisco interacting	"CPN60A (chloroplast / 60 kDa chaperonin alpha subunit); ATP binding / protein binding / unfolded protein binding Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding.  Mutants display aberrant chloroplast and embryo development."
MSGI1_65643	NODE_15976_length_193_cov_6.424870	2.9	4.7	20.2	15	0	0	-2.8	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_65643	NODE_15976_length_193_cov_6.424870	2.9	4.7	20.2	15	0	0	-2.8	0	misc.misc2	"integral membrane family protein / nodulin MtN21-related  similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT5G64700.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE81602.1); similar to Os05"
MSGI1_65643	NODE_15976_length_193_cov_6.424870	2.9	4.7	20.2	15	0	0	-2.8	0	development.unspecified	"integral membrane family protein / nodulin MtN21-related  similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT5G64700.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE81602.1); similar to Os05"
MSGI1_61332	NODE_15980_length_205_cov_94.878052	92.5	54.1	18.8	7.2	0	0	2.3	2.9	not assigned.unknown	not assigned.unknown
MSGI1_42018	NODE_15987_length_284_cov_6.845070	0.8	2.8	19.7	18.6	0	0	-4.6	-2.7	not assigned.unknown	not assigned.unknown
MSGI1_80746	NODE_15990_length_161_cov_12.236025	22.2	6.6	29.6	8.8	0	-1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_100500	NODE_15991_length_133_cov_9.308270	36	10.6	13	14	-1.8	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_122331	NODE_15994_length_61_cov_17.114754	11.4	10.4	0	0	0	0	4.5	0	protein.degradation.ubiquitin.ubiquitin	"ubiquitin family protein  similar to ubiquitin family protein [Arabidopsis thaliana] (TAIR:AT2G17200.1); similar to Os10g0542200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065193.1); similar to Ubiquitin family, putative [Medicago truncatula] (GB"
MSGI1_89005	NODE_16020_length_148_cov_4.168919	17.8	7.5	0.7	0.2	0	0	4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_75325	NODE_16022_length_171_cov_12.461988	2.5	1.8	16.4	2.4	0	-2.8	0	0	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to ATP binding / protein binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT1G72840.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thalia"
MSGI1_91122	NODE_16029_length_145_cov_20.689655	0.1	1	37	23.9	0	0	-8.5	-4.6	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1); hydrolase, hydrolyzing O-glycosyl compounds  Identical to Probable glycosyltransferase At1g55740 (EC 2.4.1.-) [Arabidopsis Thaliana] (GB:Q84VX0;GB:Q9LFZ7); similar to ATSIP2 (ARABIDOPSIS THALIANA SEED IMBI"
MSGI1_47985	NODE_16029_length_255_cov_7.360785	0.1	0	5.5	12.5	0	0	0	-4.6	cell.cycle	"cyclin family protein  similar to cyclin family protein [Arabidopsis thaliana] (TAIR:AT5G48640.1); similar to G1/S-specific cyclin C-type (GB:P93411); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like"
MSGI1_122329	NODE_16041_length_61_cov_162.573776	46.6	32.2	52.3	67.1	0	0	0	-1.1	OPP.non-reductive PP.transketolase	"transketolase, putative  similar to transketolase, putative [Arabidopsis thaliana] (TAIR:AT2G45290.1); similar to transketolase 1 [Capsicum annuum] (GB:CAA75777.1); similar to Transketolase, chloroplast precursor (TK) (GB:Q43848); similar to Transketolas"
MSGI1_122329	NODE_16041_length_61_cov_162.573776	46.6	32.2	52.3	67.1	0	0	0	-1.1	PS.calvin cyle.transketolase	"transketolase, putative  similar to transketolase, putative [Arabidopsis thaliana] (TAIR:AT2G45290.1); similar to transketolase 1 [Capsicum annuum] (GB:CAA75777.1); similar to Transketolase, chloroplast precursor (TK) (GB:Q43848); similar to Transketolas"
MSGI1_122328	NODE_16043_length_61_cov_65.983604	17	0.4	10.4	4.5	-5.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_49308	NODE_1605_length_249_cov_7.325301	37.2	15	10.9	12.9	0	0	1.8	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_49308	NODE_1605_length_249_cov_7.325301	37.2	15	10.9	12.9	0	0	1.8	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_32781	NODE_16051_length_344_cov_15.534883	24.1	8.7	4.9	6.7	0	0	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_62366	NODE_16061_length_202_cov_14.905941	8.5	11.9	46.5	10.3	0	-2.2	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_122324	NODE_16066_length_61_cov_455.016388	237.6	233.7	0.4	0	0	0	9.2	8.9	not assigned.unknown	not assigned.unknown
MSGI1_14254	NODE_16067_length_623_cov_32.566612	26.2	9.3	6.8	6.7	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_122323	NODE_1607_length_61_cov_579.704895	60.8	32.5	16.4	39.9	0	1.3	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_31749	NODE_16070_length_353_cov_12.915014	0	0	17.2	12.8	0	0	-5.1	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_22644	NODE_16071_length_461_cov_222.772232	73.2	11.5	22.6	19.4	-2.7	0	1.7	0	nucleotide metabolism.degradation	"ATAPY2 (APYRASE 2) Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY1 causes a complete inhibition of pollen germination. similar to ATAPY1 (APYRASE 1), calmodulin binding [Arabidopsis thaliana] (T"
MSGI1_122322	NODE_16072_length_61_cov_75.000000	27.6	109.3	43.5	51.5	2	0	0	1.1	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL1 (BETA GALACTOSIDASE 1); beta-galactosidase beta-galactosidase, glycosyl hydrolase family 35 similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1); similar to BGAL3 (beta-galactosidase 3), beta-galacto"
MSGI1_122322	NODE_16072_length_61_cov_75.000000	27.6	109.3	43.5	51.5	2	0	0	1.1	"misc.gluco-, galacto- and mannosidases"	"BGAL1 (BETA GALACTOSIDASE 1); beta-galactosidase beta-galactosidase, glycosyl hydrolase family 35 similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1); similar to BGAL3 (beta-galactosidase 3), beta-galacto"
MSGI1_63469	NODE_16073_length_199_cov_5.592965	0.7	0.2	7.6	10	0	0	0	-5.6	not assigned.unknown	not assigned.unknown
MSGI1_99616	NODE_16074_length_134_cov_16.768656	0.7	4	36.4	0.8	0	-5.5	-5.7	0	not assigned.unknown	not assigned.unknown
MSGI1_70251	NODE_16087_length_182_cov_7.576923	0	0	16.8	10.5	0	0	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_72967	NODE_16090_length_176_cov_16.017046	9.1	10.5	19.5	0.8	0	-4.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_122320	NODE_161_length_61_cov_22.819672	1.9	10.8	0	0	0	0	0	4.4	transport.nucleotides	"PUP1 (PURINE PERMEASE 1); purine transporter Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation. similar to ATPUP2"
MSGI1_8356	NODE_16107_length_839_cov_12.106079	31.2	18.4	10.4	21.1	0	0	1.6	0	secondary metabolism.isoprenoids.tocopherol biosynthesis.MPBQ/MSBQ methyltransferase	"APG1 (ALBINO OR PALE GREEN MUTANT 1); methyltransferase Encodes a MPBQ/MSBQ methyltransferase located in the chloroplast inner envelope membrane.  Mutant plants lack plastoquinone (PQ), suggesting that the APG1 protein is involved in the methylation step"
MSGI1_122319	NODE_16110_length_61_cov_43.229507	62.1	19.6	22.7	66.3	-1.7	1.5	1.5	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_68498	NODE_16111_length_186_cov_13.155914	2.8	2.7	30.4	2.4	0	-3.7	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_70250	NODE_16113_length_182_cov_3.390110	0	0	12.6	8	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_48404	NODE_16118_length_253_cov_80.051384	82.6	23	30.4	15.6	-1.8	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_108910	NODE_16121_length_124_cov_42.056450	5.3	3.5	42.2	46	0	0	-3	-3.7	not assigned.unknown	not assigned.unknown
MSGI1_54002	NODE_16127_length_230_cov_9.443479	0.3	0.2	9.3	10.9	0	0	0	-5.8	not assigned.unknown	not assigned.unknown
MSGI1_23894	NODE_16133_length_442_cov_18.149321	24.9	43.4	22.6	14.2	0	0	0	1.6	transport.amino acids	amino acid transporter family protein  similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT5G38820.1); similar to Os06g0633800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058132.1); similar to putative N system amino ac
MSGI1_42417	NODE_16138_length_282_cov_6.400709	0	0	10.6	14.6	0	0	0	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_115992	NODE_16163_length_79_cov_166.101273	69.5	32.2	31.3	41	-1.1	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_43314	NODE_16165_length_277_cov_15.949458	3.5	3.6	21.7	4.4	0	-2.3	-2.6	0	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.zeaxanthin epoxidase	ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase Encodes a single copy zeaxanthin epoxidase gene that functions in first step of the biosynthesis of the abiotic stress hormone abscisic acid (ABA). Mutants in this gene are unable to express female sterility i
MSGI1_122314	NODE_16167_length_61_cov_14.836065	5.2	6.1	2	14.4	0	2.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_85022	NODE_16172_length_154_cov_13.805195	0.4	0.5	6.6	33.4	0	2.3	0	-6.1	not assigned.unknown	not assigned.unknown
MSGI1_3475	NODE_16181_length_1248_cov_49.446316	35.1	39.3	130.5	28.7	0	-2.2	-1.9	0	fermentation.aldehyde dehydrogenase	ALDH7B4 (ALDEHYDE DEHYDROGENASE 7B4); 3-chloroallyl aldehyde dehydrogenase Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 7B4 (EC 1.2.1.3) (Antiquitin-1) (Turgor- responsive ALDH) (ALDH7B4) [Arabidopsis Thaliana] (GB:Q9SYG7;GB:Q546B7); simila
MSGI1_82484	NODE_16181_length_158_cov_5.139241	0	0.5	11.1	11.2	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_100498	NODE_16182_length_133_cov_42.563911	9.9	13.9	48.8	15.2	0	-1.7	-2.3	0	fermentation.aldehyde dehydrogenase	ALDH7B4 (ALDEHYDE DEHYDROGENASE 7B4); 3-chloroallyl aldehyde dehydrogenase Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 7B4 (EC 1.2.1.3) (Antiquitin-1) (Turgor- responsive ALDH) (ALDH7B4) [Arabidopsis Thaliana] (GB:Q9SYG7;GB:Q546B7); simila
MSGI1_82483	NODE_16182_length_158_cov_8.417722	4.8	4.3	10.9	20.2	0	0	0	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_66022	NODE_16186_length_192_cov_94.442711	104.9	146.4	0.4	0	0	0	8	8.2	not assigned.unknown	not assigned.unknown
MSGI1_41823	NODE_16187_length_285_cov_11.557895	17.7	35.6	16	43.1	0	1.4	0	0	misc. other Ferredoxins and Rieske domain	"ATFD3 (FERREDOXIN 3); electron carrier  similar to ATFD1 (FERREDOXIN 1), electron carrier/ iron ion binding [Arabidopsis thaliana] (TAIR:AT1G10960.1); similar to non-photosynthetic ferredoxin [Citrus sinensis] (GB:CAA87068.1); contains InterPro domain 2F"
MSGI1_41823	NODE_16187_length_285_cov_11.557895	17.7	35.6	16	43.1	0	1.4	0	0	OPP.electron transfer	"ATFD3 (FERREDOXIN 3); electron carrier  similar to ATFD1 (FERREDOXIN 1), electron carrier/ iron ion binding [Arabidopsis thaliana] (TAIR:AT1G10960.1); similar to non-photosynthetic ferredoxin [Citrus sinensis] (GB:CAA87068.1); contains InterPro domain 2F"
MSGI1_68497	NODE_16210_length_186_cov_48.575268	52.5	5	0.4	0	-3.4	0	7	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	"CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding Subunit of light-harvesting complex II (LHCII),which absorbs light and transfers energy to the photosynthetic reaction center. Identical to Chlorophyll a-b binding protein 2, chloroplast precu"
MSGI1_56445	NODE_16212_length_221_cov_34.162895	2.5	1.2	48.7	0.5	0	-6.6	-4.3	0	not assigned.unknown	not assigned.unknown
MSGI1_72965	NODE_16213_length_176_cov_12.409091	0	0.1	29.2	4.9	0	-2.6	-5.9	0	not assigned.unknown	not assigned.unknown
MSGI1_85021	NODE_1622_length_154_cov_10.811688	0	0	12.9	16.1	0	0	-4.7	-5	not assigned.unknown	not assigned.unknown
MSGI1_75820	NODE_16220_length_170_cov_10.794118	20.8	30.7	35.2	10.9	0	-1.7	0	0	DNA.repair	heavy-metal-associated domain-containing protein  similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G23760.1); similar to Unknown (protein for MGC:78286) [Mus musculus] (GB:AAH71252.1); contains InterPro domain He
MSGI1_122312	NODE_16222_length_61_cov_36.475410	18.8	11	2.4	8.6	0	0	3	0	not assigned.unknown	not assigned.unknown
MSGI1_53208	NODE_16228_length_233_cov_59.274677	46.6	23.5	16.7	26.1	0	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_11551	NODE_16235_length_705_cov_14.621277	11.5	12.4	0.1	0	0	0	6.8	4.6	not assigned.unknown	not assigned.unknown
MSGI1_56444	NODE_16248_length_221_cov_93.773758	107.5	137.1	60.3	53.9	0	0	0	1.3	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_56444	NODE_16248_length_221_cov_93.773758	107.5	137.1	60.3	53.9	0	0	0	1.3	development.unspecified	nodulin MtN21 family protein  similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT3G53210.1); similar to putative MtN21 [Oryza sativa (japonica cultivar-group)] (GB:BAD13218.1); contains InterPro domain Protein of unknown function DUF6
MSGI1_108907	NODE_16249_length_124_cov_35.241936	55.8	45.9	28.9	62.6	0	1.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_55622	NODE_16249_length_224_cov_26.941965	2.9	3.9	4.4	36.4	0	3	0	-3.2	major CHO metabolism.synthesis.starch.AGPase	"APL4 (large subunit of AGP 4); glucose-1-phosphate adenylyltransferase Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role wh"
MSGI1_102243	NODE_16251_length_131_cov_53.183205	42.8	0.7	11.9	0.3	-5.9	-5.3	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_22189	NODE_16257_length_467_cov_14.704496	11.4	20.1	57	24.1	0	-1.2	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_97177	NODE_16263_length_137_cov_22.846716	2.4	8.1	21.3	10.9	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_30029	NODE_16265_length_369_cov_11.517615	16.8	13.2	0	0	0	0	5.1	4.7	not assigned.unknown	not assigned.unknown
MSGI1_110943	NODE_16268_length_122_cov_7.737705	8.1	6.1	114.3	5.7	0	-4.3	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_41247	NODE_16282_length_288_cov_13.781250	100.9	26.9	15.4	29.7	-1.9	0	2.7	0	stress.biotic	disease resistance-responsive family protein  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22900.1); similar to dirigent-like protein pDIR9 [Picea engelmannii x Picea glauca] (GB:ABD52120.1); contains InterPro domain Plant disease resistanc
MSGI1_31184	NODE_16286_length_358_cov_43.240223	33.8	72.4	115.3	120.5	1.1	0	-1.8	0	misc.glutathione S transferases	ATGSTF9 (Arabidopsis thaliana Glutathione S-transferase (class phi) 9); glutathione transferase Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTF10 (EARLY DEHYDRATIO
MSGI1_112563	NODE_16287_length_109_cov_10.559633	9.1	11.8	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_111839	NODE_16289_length_115_cov_12.304348	0	0	11.4	18	0	0	-4.5	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_105947	NODE_16289_length_127_cov_27.188976	27.6	21.8	0.8	1.3	0	0	5.1	4.1	major CHO metabolism.degradation.starch.transporter	GLT1/PGLCT (GLUCOSE TRANSPORTER 1); carbohydrate transporter/ sugar porter Encodes a putative plastidic glucose transporter. Identical to Plastidic glucose transporter 4 (AtpGlcT) [Arabidopsis Thaliana] (GB:Q56ZZ7;GB:Q93Z41;GB:Q9LF13;GB:Q9LLD8); similar
MSGI1_105947	NODE_16289_length_127_cov_27.188976	27.6	21.8	0.8	1.3	0	0	5.1	4.1	transporter.sugars	GLT1/PGLCT (GLUCOSE TRANSPORTER 1); carbohydrate transporter/ sugar porter Encodes a putative plastidic glucose transporter. Identical to Plastidic glucose transporter 4 (AtpGlcT) [Arabidopsis Thaliana] (GB:Q56ZZ7;GB:Q93Z41;GB:Q9LF13;GB:Q9LLD8); similar
MSGI1_112658	NODE_16290_length_108_cov_31.574074	25.8	28.1	9.5	8	0	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_20589	NODE_16300_length_492_cov_111.168701	79.5	52.5	39.7	48.3	0	0	1	0	mitochondrial electron transport / ATP synthesis.F1-ATPase	"F1F0-ATPase inhibitor protein, putative  similar to Os08g0558900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062498.1); similar to Os02g0533800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047032.1); similar to F1F0-ATPase inhibitor protein"
MSGI1_112422	NODE_16335_length_110_cov_135.718185	94.2	152.6	42.5	136.9	0	1.7	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_48216	NODE_16339_length_254_cov_10.905512	0.1	0.2	15.8	16	0	0	-7.3	-6.3	not assigned.unknown	not assigned.unknown
MSGI1_94116	NODE_16341_length_141_cov_7.212766	11.2	0.1	1	0	-6.8	0	0	0	misc.UDP glucosyl and glucoronyl transferases	UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G30140.1); similar to Os01g0805400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044560.1);
MSGI1_23112	NODE_16345_length_455_cov_41.156044	56.6	40.7	0	0	0	0	6.8	6.3	not assigned.unknown	not assigned.unknown
MSGI1_38889	NODE_16348_length_301_cov_9.046512	0.3	0.5	21.9	0	0	-5.5	-6.2	0	not assigned.unknown	not assigned.unknown
MSGI1_122307	NODE_16348_length_61_cov_43.918034	58.9	59.7	28.7	41.6	0	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_100497	NODE_16352_length_133_cov_24.819550	9.7	34.5	27.8	22.2	1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_54280	NODE_16354_length_229_cov_21.672489	30.2	101.9	63.1	16.4	1.8	-1.9	0	2.6	not assigned.unknown	not assigned.unknown
MSGI1_20395	NODE_16360_length_496_cov_18.340725	0.9	6.1	48.9	3.5	0	-3.8	-5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_115675	NODE_16367_length_82_cov_111.231705	0	0	82.8	84.1	0	0	-7.4	-7.4	not assigned.unknown	not assigned.unknown
MSGI1_79549	NODE_16371_length_163_cov_483.901855	191.4	133.6	223	401.6	0	0	0	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_97175	NODE_16388_length_137_cov_102.072990	49.3	42.2	19.4	40.5	0	0	1.3	0	protein.postranslational modification	RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator One of three genes encoding phosphoprotein phosphatase 2A regulatory subunit A;  Recessive ethylene-response mutant EER1 displays increased ethylene sensitivity in the hypocotyl and stem Ide
MSGI1_24153	NODE_16416_length_438_cov_22.196346	14.6	36.5	32	83.5	0	1.4	0	-1.2	amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine.OASTL	"ATCYSC1 (BETA-SUBSTITUTED ALA SYNTHASE 3;1); L-3-cyanoalanine synthase/ cysteine synthase Encodes a cysteine synthase isomer AtcysC1. The isomer is however less effective in cysteine biosynthesis. It is involved in beta-cyanoalanine biosynthesis, an inte"
MSGI1_113938	NODE_16417_length_98_cov_75.887756	47.5	47.5	3.7	10.1	0	0	3.7	2.2	not assigned.unknown	not assigned.unknown
MSGI1_39645	NODE_16421_length_297_cov_15.383839	17.4	49.4	18.8	20.3	1.5	0	0	1.3	transport.ABC transporters and multidrug resistance systems	ABC transporter family protein  Identical to White-brown complex homolog protein 21 (WBC21) [Arabidopsis Thaliana] (GB:Q7XA72;GB:Q9LI82); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G31770.1); similar to ABC transporter-like
MSGI1_122304	NODE_16431_length_61_cov_52.409836	30	2.3	12	12.8	-3.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_85624	NODE_16432_length_153_cov_17.888889	2.3	2.7	22	5.6	0	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_92567	NODE_16434_length_143_cov_445.433563	236.2	180.5	96.9	154.9	0	0	1.3	0	C1-metabolism.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_92567	NODE_16434_length_143_cov_445.433563	236.2	180.5	96.9	154.9	0	0	1.3	0	amino acid metabolism.synthesis.serine-glycine-cysteine group.glycine.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_92567	NODE_16434_length_143_cov_445.433563	236.2	180.5	96.9	154.9	0	0	1.3	0	PS.photorespiration.serine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_93292	NODE_1644_length_142_cov_36.943661	35.6	23.6	10.5	13.1	0	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_24387	NODE_16441_length_435_cov_15.898850	3.9	14.4	0.2	0.1	0	0	0	7.2	not assigned.unknown	not assigned.unknown
MSGI1_69796	NODE_16456_length_183_cov_9.431694	6.3	14.3	1.2	1.2	0	0	0	3.6	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G17680.1); similar to TIR-NBS type disease resistance protein [Populus trichocarpa] (GB:ABF81459"
MSGI1_122302	NODE_16462_length_61_cov_35.278690	17.5	34.7	53.1	68.4	0	0	-1.6	0	transport.amino acids	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_122302	NODE_16462_length_61_cov_35.278690	17.5	34.7	53.1	68.4	0	0	-1.6	0	hormone metabolism.auxin.signal transduction	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_122302	NODE_16462_length_61_cov_35.278690	17.5	34.7	53.1	68.4	0	0	-1.6	0	transport.misc	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_22860	NODE_16480_length_458_cov_11.482533	1.9	8.7	33.8	15.7	0	0	-4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_115507	NODE_16480_length_83_cov_64.578316	5.5	22.4	33.2	4.9	2	-2.8	-2.6	2.2	not assigned.unknown	not assigned.unknown
MSGI1_13719	NODE_16491_length_638_cov_32.075233	11.6	6	15.5	1.9	0	-3	0	0	RNA.regulation of transcription.MADS box transcription factor family	AGL8 (AGAMOUS-LIKE 8); transcription factor MADS box gene negatively regulated  by APETALA1 Identical to Agamous-like MADS-box protein AGL8 (Floral homeotic protein AGL8) (Transcription factor FRUITFULL) (AGL8) [Arabidopsis Thaliana] (GB:Q38876); similar
MSGI1_13719	NODE_16491_length_638_cov_32.075233	11.6	6	15.5	1.9	0	-3	0	0	development.unspecified	AGL8 (AGAMOUS-LIKE 8); transcription factor MADS box gene negatively regulated  by APETALA1 Identical to Agamous-like MADS-box protein AGL8 (Floral homeotic protein AGL8) (Transcription factor FRUITFULL) (AGL8) [Arabidopsis Thaliana] (GB:Q38876); similar
MSGI1_68495	NODE_16503_length_186_cov_9.354838	0	0	12	7.1	0	0	-4.6	0	cell wall	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39000.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G38990.1); similar to protein kinase family protein [Arabidopsis t
MSGI1_68495	NODE_16503_length_186_cov_9.354838	0	0	12	7.1	0	0	-4.6	0	signalling.receptor kinases.Catharanthus roseus-like RLK1	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39000.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G38990.1); similar to protein kinase family protein [Arabidopsis t
MSGI1_37033	NODE_16504_length_313_cov_12.444090	18.2	23.6	44.1	6.1	0	-2.9	0	0	stress.biotic	glycosyl hydrolase family 81 protein  similar to glycosyl hydrolase family 81 protein [Arabidopsis thaliana] (TAIR:AT1G18310.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96863.1); similar to beta-glucan-binding protein 4 [Medicago truncatu
MSGI1_114572	NODE_16505_length_92_cov_116.423912	8.3	41.6	4.5	1.3	2.3	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_46902	NODE_16506_length_260_cov_102.092308	103.1	35.6	57.5	135.6	-1.5	1.2	0	-1.9	cell wall.modification	"ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thali"
MSGI1_66811	NODE_16507_length_190_cov_10.700000	0	0	14.5	25.1	0	0	-4.9	-5.6	not assigned.unknown	not assigned.unknown
MSGI1_122299	NODE_16507_length_61_cov_15.606558	0	0	22.3	22.6	0	0	-5.5	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_89683	NODE_16508_length_147_cov_8.782313	0.9	1.6	18.9	1.4	0	-3.8	-4.4	0	not assigned.unknown	not assigned.unknown
MSGI1_83128	NODE_16513_length_157_cov_21.898088	2.3	1.2	36.6	0.7	0	-5.7	-4	0	redox.thioredoxin	"ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1); thiol-disulfide exchange intermediate Encodes a single cysteine active site thioredoxin-related protein, similar to thioredoxin H-type from Arabidopsis thaliana SP:P29448, Nicotiana tabacum"
MSGI1_62361	NODE_16516_length_202_cov_21.450495	0	0	16.6	53.3	0	1.7	-5.1	-6.7	not assigned.unknown	not assigned.unknown
MSGI1_115506	NODE_16525_length_83_cov_66.469879	44.5	67.1	64.3	28.3	0	-1.2	0	1.2	cell wall.cellulose synthesis.cellulose synthase	"CESA4 (CELLULASE SYNTHASE 4); transferase, transferring glycosyl groups Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Identical to Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC 2.4.1.12) (AtCesA-4) (Irregular xyl"
MSGI1_79547	NODE_16529_length_163_cov_23.766870	0	0	47.1	6.3	0	-2.9	-6.6	0	not assigned.unknown	not assigned.unknown
MSGI1_86998	NODE_1653_length_151_cov_7.483444	0	0	8.9	11.8	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_117449	NODE_16531_length_67_cov_47.701492	30.6	44.4	19	14.5	0	0	0	1.6	cell wall.cellulose synthesis.cellulose synthase	"CESA4 (CELLULASE SYNTHASE 4); transferase, transferring glycosyl groups Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Identical to Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC 2.4.1.12) (AtCesA-4) (Irregular xyl"
MSGI1_113709	NODE_16538_length_100_cov_74.730003	65.8	44	0	0	0	0	7	6.5	protein.synthesis.misc ribososomal protein	40S ribosomal protein S14 (RPS14A)  Identical to 40S ribosomal protein S14-2 (RPS14B) [Arabidopsis Thaliana] (GB:Q9CAX6); Identical to 40S ribosomal protein S14-1 (RPS14A) [Arabidopsis Thaliana] (GB:Q9SIH0); similar to 40S ribosomal protein S14 (RPS14B) [
MSGI1_97172	NODE_1654_length_137_cov_24.605839	1.5	1	26.5	55.2	0	1.1	-4.1	-5.8	not assigned.unknown	not assigned.unknown
MSGI1_85623	NODE_16542_length_153_cov_28.542484	2.9	13.9	5.2	0.9	0	0	0	3.9	not assigned.unknown	not assigned.unknown
MSGI1_47515	NODE_16546_length_257_cov_5.284047	0.4	0.7	14.5	0.8	0	-4.2	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_18120	NODE_16547_length_536_cov_25.164179	26.9	20.9	6.5	7.3	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_76853	NODE_16548_length_168_cov_50.375000	13.5	6.8	0.6	1.1	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_85017	NODE_16549_length_154_cov_17.285715	3.9	12	23.3	4.4	0	-2.4	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_107889	NODE_16550_length_125_cov_10.616000	4.4	12.9	23	11.9	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_80139	NODE_16552_length_162_cov_14.512345	0	0	16.4	11.9	0	0	-5	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_114686	NODE_16577_length_91_cov_50.263737	42.9	10.8	5.1	9.3	-2	0	3.1	0	Biodegradation of Xenobiotics	"glyoxal oxidase-related  similar to glyoxal oxidase-related [Arabidopsis thaliana] (TAIR:AT1G75620.1); similar to glyoxal oxidase [Vitis pseudoreticulata] (GB:ABA42922.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contain"
MSGI1_5896	NODE_16578_length_979_cov_19.310520	13.5	9.4	0.1	0	0	0	7.1	0	not assigned.unknown	not assigned.unknown
MSGI1_92563	NODE_16588_length_143_cov_7.986014	0	0	7.4	16.7	0	0	0	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_97171	NODE_16589_length_137_cov_61.248177	5.5	24.8	9.6	8.4	2.2	0	0	0	hormone metabolism.ethylene.induced-regulated-responsive-activated	"ATMBF1C/MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator.  May serve as a brid"
MSGI1_97171	NODE_16589_length_137_cov_61.248177	5.5	24.8	9.6	8.4	2.2	0	0	0	RNA.regulation of transcription.unclassified	"ATMBF1C/MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator.  May serve as a brid"
MSGI1_8858	NODE_1659_length_813_cov_17.544895	25.4	11	5.4	13.9	0	0	2.2	0	RNA.regulation of transcription.unclassified	
MSGI1_40541	NODE_16596_length_292_cov_21.489725	14.1	13.4	32.8	7.9	0	-2.1	0	0	lipid metabolism.lipid degradation.beta-oxidation.acyl CoA DH	"ACX4 (ACYL-COA OXIDASE 4); oxidoreductase Encodes a short-chain acyl-CoA oxidase, which catalyzes the first step of peroxisomal fatty acid beta-oxidation during early, post-germinative growth in oilseed species. Null mutants virtually lack short-chain ac"
MSGI1_116325	NODE_16597_length_76_cov_133.342102	7.5	31.6	8.5	23.9	2.1	0	0	0	cell wall.cellulose synthesis.cellulose synthase	"IRX3 (IRREGULAR XYLEM 3, MURUS 10); cellulose synthase encodes a xylem-specific cellulose synthase Identical to Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) (CESA7) [Arabidopsis Thal"
MSGI1_99613	NODE_16598_length_134_cov_28.955223	11.9	84	27.9	17	2.8	0	0	2.3	not assigned.unknown	not assigned.unknown
MSGI1_90395	NODE_16601_length_146_cov_13.013699	13.2	12.7	43.4	16.2	0	-1.4	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_68896	NODE_16605_length_185_cov_6.037838	0.1	0	9.7	13.8	0	0	0	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_122291	NODE_16618_length_61_cov_83.081970	26.7	59.7	49.9	26.4	1.2	0	0	1.2	DNA.unspecified	PATL1 (PATELLIN 1); transporter novel cell-plate-associated protein that is related in sequence to proteins involved in membrane trafficking in other eukaryotes Identical to Patellin-1 (PATL1) [Arabidopsis Thaliana] (GB:Q56WK6;GB:Q9C7U0); similar to SEC1
MSGI1_122291	NODE_16618_length_61_cov_83.081970	26.7	59.7	49.9	26.4	1.2	0	0	1.2	transport.misc	PATL1 (PATELLIN 1); transporter novel cell-plate-associated protein that is related in sequence to proteins involved in membrane trafficking in other eukaryotes Identical to Patellin-1 (PATL1) [Arabidopsis Thaliana] (GB:Q56WK6;GB:Q9C7U0); similar to SEC1
MSGI1_107887	NODE_16639_length_125_cov_115.272003	38.4	6.5	12.8	4.6	-2.6	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_22272	NODE_16649_length_466_cov_10.701716	12.5	0	1.1	0.4	-4.6	0	3.5	0	cell wall.degradation.pectate lyases and polygalacturonases	"PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding polygalacturonase inhibiting protein 1 (PGIP1) mRNA, Identical to Polygalacturonase inhibitor 1 precursor (Polygalacturonase-inhibiting protein) (PGIP-1) (PGIP1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_34958	NODE_1666_length_328_cov_344.829254	114.1	70.5	33.3	106.8	0	1.7	1.8	0	protein.synthesis.misc ribososomal protein	EMB2171 (EMBRYO DEFECTIVE 2171); structural constituent of ribosome  Identical to 60S ribosomal protein L23 (RPL23C) [Arabidopsis Thaliana] (GB:P49690;GB:Q8L8P0;GB:Q9SDB5); similar to 60S ribosomal protein L23 (RPL23A) [Arabidopsis thaliana] (TAIR:AT1G044
MSGI1_107886	NODE_16660_length_125_cov_9.688000	53.4	2.8	11.5	2.2	-4.3	0	2.2	0	misc.cytochrome P450	"CYP86A7 (cytochrome P450, family 86, subfamily A, polypeptide 7); oxygen binding Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers. similar to CYP86A4 (cytochrome P450, family 86, su"
MSGI1_54279	NODE_16660_length_229_cov_65.275108	91	39.9	20.6	28.7	-1.2	0	2.1	0	protein.degradation.ubiquitin	UBQ6 (ubiquitin 6); protein binding polyubiquitin gene Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical to 40S ribosomal protein S27a-2 (UBQ6) [Arabidopsis Thaliana]
MSGI1_117706	NODE_16665_length_65_cov_153.815384	40.6	36	7.7	20.7	0	0	2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_44322	NODE_16668_length_272_cov_9.797794	2.6	1.7	7.7	19.7	0	0	0	-3.5	hormone metabolism.brassinosteroid.synthesis-degradation.sterols.other	"squalene monooxygenase, putative / squalene epoxidase, putative  similar to XF1, oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G58440.1); similar to squalene monooxygenase, putative / squalene epoxidase, putative [Arabidopsis thaliana] (TAIR:AT2G22830.1"
MSGI1_44322	NODE_16668_length_272_cov_9.797794	2.6	1.7	7.7	19.7	0	0	0	-3.5	"lipid metabolism.'exotics' (steroids, squalene etc).squalene monooxygenase"	"squalene monooxygenase, putative / squalene epoxidase, putative  similar to XF1, oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G58440.1); similar to squalene monooxygenase, putative / squalene epoxidase, putative [Arabidopsis thaliana] (TAIR:AT2G22830.1"
MSGI1_56167	NODE_16671_length_222_cov_76.373871	63.8	45.3	12.4	22	0	0	2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_86283	NODE_16673_length_152_cov_23.592106	24.8	21.4	3.7	3.8	0	0	2.7	2.5	transport.potassium	KAB1 (POTASSIUM CHANNEL BETA SUBUNIT); potassium channel  similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:AT1G60690.1); similar to K+ channel protein (GB:AAA87294.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR0
MSGI1_68895	NODE_16677_length_185_cov_19.329729	16.4	14.6	1.6	1.4	0	0	3.4	3.4	not assigned.unknown	not assigned.unknown
MSGI1_24862	NODE_16677_length_429_cov_21.899767	29.5	31.1	7.9	13	0	0	1.9	0	RNA.regulation of transcription.unclassified	RPT2 (ROOT PHOTOTROPISM 2); protein binding light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis Identical to Root phototropism protein 2 (RPT2) [Arabidopsis Thaliana] (GB:Q682S0;GB:O04343;GB:O04344;G
MSGI1_24862	NODE_16677_length_429_cov_21.899767	29.5	31.1	7.9	13	0	0	1.9	0	signalling.light	RPT2 (ROOT PHOTOTROPISM 2); protein binding light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis Identical to Root phototropism protein 2 (RPT2) [Arabidopsis Thaliana] (GB:Q682S0;GB:O04343;GB:O04344;G
MSGI1_112289	NODE_16681_length_111_cov_12.639640	0.5	1	17.3	4.1	0	0	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_11247	NODE_16688_length_715_cov_62.194405	56.8	64.9	24.9	28.3	0	0	1.2	1.2	misc.acid and other phosphatases	SIT4 phosphatase-associated family protein  similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT2G28360.1); similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT3G45190.1); similar to SIT4 p
MSGI1_81304	NODE_16689_length_160_cov_9.062500	5.9	11.5	20.7	4.1	0	-2.3	0	0	secondary metabolism.flavonoids.flavonols	"UGT73C6 (UDP-glucosyl transferase 73C6); UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups The At2g36790 gene encodes a UDP-glucose:flavonol-3-O-glycoside-7-O-glucosyltransferase (UGT73C6)attaching a glucosyl res"
MSGI1_56442	NODE_16691_length_221_cov_11.619909	9.1	1	44.6	6.2	0	-2.8	-2.3	0	cell wall	"peroxidase 72 (PER72) (P72) (PRXR8)  Identical to Peroxidase 72 precursor (EC 1.11.1.7) (Atperox P72) (PRXR8) (ATP6a) (PER72) [Arabidopsis Thaliana] (GB:Q9FJZ9;GB:Q43736); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G36430.1); similar"
MSGI1_56442	NODE_16691_length_221_cov_11.619909	9.1	1	44.6	6.2	0	-2.8	-2.3	0	misc.peroxidases	"peroxidase 72 (PER72) (P72) (PRXR8)  Identical to Peroxidase 72 precursor (EC 1.11.1.7) (Atperox P72) (PRXR8) (ATP6a) (PER72) [Arabidopsis Thaliana] (GB:Q9FJZ9;GB:Q43736); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G36430.1); similar"
MSGI1_70249	NODE_16693_length_182_cov_24.247253	40.8	30.4	60.4	14.2	0	-2.1	0	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"AP2 domain-containing transcription factor, putative  similar to RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G68840.1); similar to DNA binding protein Rav [Capsicum annuum] ("
MSGI1_16984	NODE_16698_length_558_cov_44.697132	39	19.1	11.5	20.8	0	0	1.8	0	lipid metabolism.FA synthesis and FA elongation.pyruvate DH	PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA); pyruvate dehydrogenase (acetyl-transferring) Encodes a putative plastid pyruvate dehydrogenase E1 beta subunit that is distinct from the mitochondrial pyruvate dehydrogenase E1 beta subunit. similar to transk
MSGI1_52159	NODE_16699_length_237_cov_16.261604	4.7	1.5	40.9	5.4	0	-2.9	-3.1	0	misc.acid and other phosphatases	"purple acid phosphatase family protein  similar to ATPAP3/PAP3 (purple acid phosphatase 3), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT1G14700.1); similar to purple acid phosphatase 1 [Solanum tuberosum] (GB:AAT"
MSGI1_107885	NODE_16706_length_125_cov_120.103996	120.2	257.1	207.8	332.7	1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_79544	NODE_16706_length_163_cov_17.276073	31.2	38.7	66.2	43.9	0	0	-1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_54552	NODE_16711_length_228_cov_54.368420	32.1	6.9	18	11.3	-2.2	0	0	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL8 (beta-glactosidase 8); beta-galactosidase putative beta-galactosidase (BGAL8 gene) similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL9 (BETA GALACTOSIDASE 9), beta-galactosidase [A"
MSGI1_54552	NODE_16711_length_228_cov_54.368420	32.1	6.9	18	11.3	-2.2	0	0	0	"misc.gluco-, galacto- and mannosidases"	"BGAL8 (beta-glactosidase 8); beta-galactosidase putative beta-galactosidase (BGAL8 gene) similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL9 (BETA GALACTOSIDASE 9), beta-galactosidase [A"
MSGI1_26099	NODE_16714_length_413_cov_7.341404	5.6	19.1	12.1	0.7	0	-4.1	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_112969	NODE_16723_length_106_cov_9.641509	7.2	14.7	0	0	0	0	0	4.9	RNA.regulation of transcription.GRAS transcription factor family	"SCL5; transcription factor Encodes a scarecrow-like protein (SCL5). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to Putative SCARECROW gene regu"
MSGI1_112969	NODE_16723_length_106_cov_9.641509	7.2	14.7	0	0	0	0	0	4.9	development.unspecified	"SCL5; transcription factor Encodes a scarecrow-like protein (SCL5). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to Putative SCARECROW gene regu"
MSGI1_98802	NODE_16730_length_135_cov_18.244444	16.2	22.8	18.1	45.8	0	1.3	0	0	RNA.transcription	"RDR1 (RNA-DEPENDENT RNA POLYMERASE 1); RNA-directed RNA polymerase/ nucleic acid binding Encodes RNA-dependent RNA polymerase.   While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in inf"
MSGI1_91837	NODE_16732_length_144_cov_16.534721	16.8	6.2	0	0	0	0	5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_62360	NODE_16734_length_202_cov_11.262376	9.4	11.6	1.1	0.6	0	0	0	4.3	cell.organisation	ankyrin repeat family protein  similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT3G04140.1); similar to Os05g0298200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055122.1); similar to hypothetical protein [Cicer arietinum] (GB:
MSGI1_122286	NODE_16734_length_61_cov_14.983606	7.6	14.7	0	0	0	0	0	4.9	not assigned.unknown	not assigned.unknown
MSGI1_89003	NODE_16750_length_148_cov_9.864865	19.6	3.9	39.8	40.6	-2.3	0	0	-3.4	not assigned.unknown	not assigned.unknown
MSGI1_105942	NODE_16754_length_127_cov_6.543307	19.4	4	16.3	6.4	-2.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_12299	NODE_16757_length_680_cov_33.389706	30.8	25.7	6.7	9.7	0	0	2.2	0	transporter.sugars	GLT1/PGLCT (GLUCOSE TRANSPORTER 1); carbohydrate transporter/ sugar porter Encodes a putative plastidic glucose transporter. Identical to Plastidic glucose transporter 4 (AtpGlcT) [Arabidopsis Thaliana] (GB:Q56ZZ7;GB:Q93Z41;GB:Q9LF13;GB:Q9LLD8); similar
MSGI1_12299	NODE_16757_length_680_cov_33.389706	30.8	25.7	6.7	9.7	0	0	2.2	0	major CHO metabolism.degradation.starch.transporter	GLT1/PGLCT (GLUCOSE TRANSPORTER 1); carbohydrate transporter/ sugar porter Encodes a putative plastidic glucose transporter. Identical to Plastidic glucose transporter 4 (AtpGlcT) [Arabidopsis Thaliana] (GB:Q56ZZ7;GB:Q93Z41;GB:Q9LF13;GB:Q9LLD8); similar
MSGI1_99612	NODE_1676_length_134_cov_255.037308	233.5	350	1.5	0.3	0	0	7.3	10.2	not assigned.unknown	not assigned.unknown
MSGI1_89002	NODE_1676_length_148_cov_15.554054	0	0	12.8	12	0	0	-4.7	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_82480	NODE_16765_length_158_cov_7.056962	0	0.2	18.4	3.7	0	0	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_116730	NODE_1677_length_73_cov_606.808228	2.5	2.6	263.1	9.8	0	-4.7	-6.7	0	not assigned.unknown	not assigned.unknown
MSGI1_39321	NODE_16771_length_299_cov_30.695652	14.1	17.5	0	0	0	0	4.8	5.1	nucleotide metabolism.synthesis.pyrimidine.UMP Synthase	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)  Identical to Uridine 5'-monophosphate synthase (UMP synthase) [Includes: Orotate phosphoribosyltransferase (EC 2.4.2.10) (OPRTase); Orotidine 5'- phosphate decarboxylase (EC 4.1.1.23) (OMPd
MSGI1_91835	NODE_16777_length_144_cov_39.256943	19.4	69.1	56.7	51.1	1.8	0	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_49057	NODE_16779_length_250_cov_25.280001	52.2	11	41.9	31.8	-2.2	0	0	0	Biodegradation of Xenobiotics.lactoylglutathione lyase	"ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase Encodes a glyoxalase I homolog ATGLX1. similar to lactoylglutathione lyase, putative / glyoxalase I, putative [Arabidopsis thaliana] (TAIR:AT1G67280.1); similar to Putative lactoylglutathione lyase"
MSGI1_49057	NODE_16779_length_250_cov_25.280001	52.2	11	41.9	31.8	-2.2	0	0	0	amino acid metabolism.degradation.aspartate family.threonine	"ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase Encodes a glyoxalase I homolog ATGLX1. similar to lactoylglutathione lyase, putative / glyoxalase I, putative [Arabidopsis thaliana] (TAIR:AT1G67280.1); similar to Putative lactoylglutathione lyase"
MSGI1_14146	NODE_16780_length_626_cov_22.813099	14.7	15.6	0	0	0	0	4.9	5	not assigned.unknown	not assigned.unknown
MSGI1_47092	NODE_16787_length_259_cov_4.586873	0	0	10.4	12.2	0	0	0	-4.6	signalling.light	"FRS7 (FAR1-RELATED SEQUENCE 7); zinc ion binding  similar to FRS12 (FAR1-RELATED SEQUENCE 12), zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G18960.1); similar to FAR1; Zinc finger, SWIM-type [Medicago truncatula] (GB:ABE87107.1); contains InterPro do"
MSGI1_41820	NODE_16792_length_285_cov_20.129824	25.4	37.5	3.8	7.1	0	0	2.7	2.4	not assigned.unknown	not assigned.unknown
MSGI1_23404	NODE_16796_length_451_cov_21.261641	19.5	80.6	1.6	3.7	2	0	3.6	4.4	not assigned.unknown	not assigned.unknown
MSGI1_17235	NODE_16802_length_553_cov_8.974684	6.9	2.4	17.2	1.3	0	-3.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_9172	NODE_16802_length_797_cov_17.217064	0.3	20.7	1.7	10.2	6.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_122283	NODE_16809_length_61_cov_27.639345	19.4	7.6	0	0	0	0	5.3	0	tetrapyrrole synthesis.magnesium protoporphyrin IX methyltransferase	CHLM (MAGNESIUM-PROTOPORPHYRIN IX METHYLTRANSFERASE); magnesium protoporphyrin IX methyltransferase Encodes a protein with methyltransferase activity responsible for the methylation of magnesium protoporphyrin IX. Mutants defective in this gene are affec
MSGI1_38441	NODE_16819_length_304_cov_25.911184	17.2	46.3	26.1	24.1	1.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_96424	NODE_16827_length_138_cov_14.536232	13.9	7.9	28.3	4.8	0	-2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_122282	NODE_16833_length_61_cov_36.622952	31.5	31.3	19.5	53.5	0	1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_11804	NODE_1684_length_696_cov_22.985632	17.2	17.4	4.2	2.4	0	0	0	2.9	not assigned.unknown	not assigned.unknown
MSGI1_109872	NODE_16841_length_123_cov_27.788618	13.9	2.3	38	4.1	0	-3.2	0	0	N-metabolism.N-degradation.glutamate dehydrogenase	GDH1 (GLUTAMATE DEHYDROGENASE 1); oxidoreductase encodes the beta-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells. Identical to Glutamate dehydrogenase 1 (EC 1.4.1.3) (GD
MSGI1_12104	NODE_16844_length_686_cov_11.002915	0.8	0.7	4.3	32.9	0	2.9	0	-5.6	RNA.processing.ribonucleases	RNase H domain-containing protein  similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G24090.1); similar to Os08g0177800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061125.1); similar to putative RNase H domain-containing
MSGI1_28417	NODE_16850_length_386_cov_31.875648	26.6	8.6	6.8	18.1	0	0	2	0	protein.folding	"CPN20 (CHAPERONIN 20); calmodulin binding Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES. Identical to 20 kDa chaperonin, chloroplast precursor (Protein Cpn21) (Chloroplast protein Cpn10) (Chloroplast chaperonin 1"
MSGI1_80741	NODE_16855_length_161_cov_29.360249	32	16.2	80	9	0	-3.2	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_8667	NODE_16856_length_823_cov_18.466585	26.1	1.9	0.5	0.2	-3.8	0	5.7	0	not assigned.unknown	not assigned.unknown
MSGI1_57561	NODE_1686_length_217_cov_101.041473	99.6	36.8	26.2	65.4	-1.4	1.3	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_122280	NODE_16860_length_61_cov_40.918034	25	16.4	0	0	0	0	5.6	5	stress.abiotic.drought/salt	dehydration-responsive family protein  similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G18030.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G10440.1); similar to dehydration-responsi
MSGI1_57560	NODE_16866_length_217_cov_44.497696	37.8	2	20.1	3.2	-4.2	-2.7	0	0	cell wall.pectin*esterases.misc	"pectinesterase, putative  similar to pectinesterase, putative [Arabidopsis thaliana] (TAIR:AT3G10720.2); similar to papillar cell-specific pectin methylesterase-like protein [Brassica napus] (GB:AAK84428.1); similar to Os01g0311800 [Oryza sativa (japonic"
MSGI1_18915	NODE_16866_length_524_cov_16.770992	2.3	19.4	4.1	13	3.1	0	0	0	misc.glutathione S transferases	"ATGSTU5 (Arabidopsis thaliana Glutathione S-transferase (class tau) 5); glutathione transferase Encodes a member of the TAU glutathione S-transferase gene family. Gene expression is induced by exposure to auxin, pathogen and herbicides. Naming convention"
MSGI1_80740	NODE_16874_length_161_cov_8.161490	11.1	21.1	4.8	3.6	0	0	0	2.6	not assigned.unknown	not assigned.unknown
MSGI1_67649	NODE_16883_length_188_cov_11.063829	3.2	1.1	29	0.6	0	-5.6	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_90392	NODE_16885_length_146_cov_69.993149	64.3	59.3	14.6	10.2	0	0	2.1	2.5	not assigned.unknown	not assigned.unknown
MSGI1_85016	NODE_1689_length_154_cov_9.571428	7.7	5.3	19.7	1.6	0	-3.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_66392	NODE_16890_length_191_cov_39.272251	15.2	16.9	33.9	45.5	0	0	0	-1.4	transporter.sugars	"hexose transporter, putative  Identical to Probable plastidic glucose transporter 2 [Arabidopsis Thaliana] (GB:Q9FYG3); similar to SGB1, carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G79820.2); similar to Sugar transporter [Medic"
MSGI1_98031	NODE_16900_length_136_cov_179.272064	108	6.7	56	10.9	-4	-2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_122277	NODE_16901_length_61_cov_40.032787	20.3	1.4	2	0.4	-3.9	0	3.3	0	cell wall.modification	"ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Ide"
MSGI1_47513	NODE_16913_length_257_cov_279.190674	3.7	67.7	15.1	76	4.2	2.3	0	0	protein.degradation.subtilases	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_89000	NODE_16923_length_148_cov_55.871620	4.7	23.2	14.9	3.8	2.3	0	0	2.6	development.unspecified	"SCL5; transcription factor Encodes a scarecrow-like protein (SCL5). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to Putative SCARECROW gene regu"
MSGI1_89000	NODE_16923_length_148_cov_55.871620	4.7	23.2	14.9	3.8	2.3	0	0	2.6	RNA.regulation of transcription.GRAS transcription factor family	"SCL5; transcription factor Encodes a scarecrow-like protein (SCL5). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to Putative SCARECROW gene regu"
MSGI1_108897	NODE_16926_length_124_cov_112.862900	46.1	22.5	30.2	52	0	0	0	-1.2	redox.ascorbate and glutathione.ascorbate.GME	"GME (GDP-D-MANNOSE 3',5'-EPIMERASE); GDP-mannose 3,5-epimerase/ NAD binding / catalytic Encodes a protein with GDP-D-mannose 3',5'-epimerase activity.  The enzyme is involved in ascorbate biosynthesis. It catalyzes the conversion of GDP-D-mannose to GDP-"
MSGI1_111135	NODE_16929_length_121_cov_62.950413	70.9	34.3	37.3	46	-1	0	0	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"RPS1 (ribosomal protein S1); RNA binding  similar to S1 RNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G71720.1); similar to 30S ribosomal protein S1, chloroplast precursor (CS1) (GB:P29344); contains InterPro domain Nucleic acid-b"
MSGI1_111955	NODE_1693_length_114_cov_40.078949	36.1	33.9	13.7	9.8	0	0	1.4	1.8	RNA.regulation of transcription.SNF7	SNF7 family protein  similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT3G10640.1); similar to putative CGI-34 protein [Oryza sativa (japonica cultivar-group)] (GB:BAB16321.1); similar to Os05g0102900 [Oryza sativa (japonica cultivar-group)] (G
MSGI1_65265	NODE_16947_length_194_cov_13.170103	14.7	37.8	5.7	35.5	0	2.6	0	0	amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine.OASTL	"ATCYSC1 (BETA-SUBSTITUTED ALA SYNTHASE 3;1); L-3-cyanoalanine synthase/ cysteine synthase Encodes a cysteine synthase isomer AtcysC1. The isomer is however less effective in cysteine biosynthesis. It is involved in beta-cyanoalanine biosynthesis, an inte"
MSGI1_80739	NODE_16949_length_161_cov_18.478260	22.8	31.1	67.7	44.5	0	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_87640	NODE_16983_length_150_cov_58.900002	62.1	41.8	0	0	0	0	7	6.4	cell wall.precursor synthesis.UXS	"UXS6; catalytic  similar to UXS5 (UDP-Xyl synthase 5), catalytic [Arabidopsis thaliana] (TAIR:AT3G46440.2); similar to UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE) [Arabidopsis thaliana] (TAIR:AT5G59290.2); similar to UDP-glucuronic acid decarboxylase 3 [Pop"
MSGI1_122273	NODE_16984_length_61_cov_45.475410	5.4	23	0.4	0	2.1	0	0	5.5	hormone metabolism.auxin.signal transduction	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_122273	NODE_16984_length_61_cov_45.475410	5.4	23	0.4	0	2.1	0	0	5.5	transport.misc	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_122273	NODE_16984_length_61_cov_45.475410	5.4	23	0.4	0	2.1	0	0	5.5	transport.amino acids	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_39319	NODE_16986_length_299_cov_33.230770	21	4.7	19.7	5.6	-2.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_41618	NODE_16999_length_286_cov_31.475525	20.6	205.1	244.8	290.6	3.3	0	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_41082	NODE_1701_length_289_cov_6.020761	0.7	0.7	10	11.9	0	0	0	-4.1	cell wall	"leucine-rich repeat protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G24240.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G26540.1); similar to"
MSGI1_41082	NODE_1701_length_289_cov_6.020761	0.7	0.7	10	11.9	0	0	0	-4.1	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G24240.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G26540.1); similar to"
MSGI1_94867	NODE_17013_length_140_cov_11.964286	8.7	10.5	14.7	1	0	-3.9	0	0	stress.biotic	glycosyl hydrolase family 81 protein  similar to glycosyl hydrolase family 81 protein [Arabidopsis thaliana] (TAIR:AT1G18310.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96863.1); similar to beta-glucan-binding protein 4 [Medicago truncatu
MSGI1_59115	NODE_17016_length_212_cov_17.858490	15.3	31.2	9.1	6.6	0	0	0	2.2	"RNA.regulation of transcription.ARF, Auxin Response Factor family"	ARF4 (AUXIN RESPONSE FACTOR 4); transcription factor Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity. Identical to Auxin
MSGI1_59115	NODE_17016_length_212_cov_17.858490	15.3	31.2	9.1	6.6	0	0	0	2.2	hormone metabolism.auxin.signal transduction	ARF4 (AUXIN RESPONSE FACTOR 4); transcription factor Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity. Identical to Auxin
MSGI1_111836	NODE_17017_length_115_cov_51.565216	43.4	19.5	0	0	0	0	6.4	5.3	protein.synthesis.misc ribososomal protein	60S ribosomal protein L15 (RPL15B)  Identical to 60S ribosomal protein L15-2 (RPL15B) [Arabidopsis Thaliana] (GB:Q8VYF1;GB:O23582); Identical to 60S ribosomal protein L15-1 (RPL15A) [Arabidopsis Thaliana] (GB:O23515); similar to 60S ribosomal protein L15
MSGI1_55909	NODE_17022_length_223_cov_18.959641	70.5	39	77.4	14.1	0	-2.5	0	1.5	not assigned.unknown	not assigned.unknown
MSGI1_104065	NODE_17023_length_129_cov_5.038760	0	0	5.6	11.6	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_46051	NODE_17023_length_264_cov_166.015152	194.1	176.1	435.3	336.7	0	0	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_7334	NODE_1703_length_892_cov_31.047085	41	3.5	7.9	3.7	-3.6	0	2.4	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_7334	NODE_1703_length_892_cov_31.047085	41	3.5	7.9	3.7	-3.6	0	2.4	0	secondary metabolism.flavonoids.anthocyanins.leucocyanidin oxygenase	"LDOX (TANNIN DEFICIENT SEED 4) encodes leucoanthocyanidin dioxygenase, which is involved in proanthocyanin biosynthesis. Mutant analysis suggests that this gene is also involved in vacuole formation. Identical to Leucoanthocyanidin dioxygenase (EC 1.14.1"
MSGI1_56708	NODE_17037_length_220_cov_42.927273	52.7	3	20.2	7	-4.1	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_83122	NODE_17038_length_157_cov_13.159236	5.1	3.3	17.8	18.4	0	0	0	-2.5	not assigned.unknown	not assigned.unknown
MSGI1_111134	NODE_17041_length_121_cov_278.363647	240.7	246.6	94.7	434.7	0	2.2	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_122264	NODE_17049_length_61_cov_38.016392	7.3	10.2	4.4	27.6	0	2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_115316	NODE_17053_length_85_cov_137.211761	52.9	21.4	30	39.3	-1.3	0	0	0	PS.calvin cyle.phosphoglycerate kinase	"PGK1 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase nuclear phosphoglycerate kinase (PGK1) similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2); similar to phosphoglycerate kinase, putative [Arabidopsis thaliana] (TAIR"
MSGI1_115316	NODE_17053_length_85_cov_137.211761	52.9	21.4	30	39.3	-1.3	0	0	0	glycolysis.phosphoglycerate kinases	"PGK1 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase nuclear phosphoglycerate kinase (PGK1) similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2); similar to phosphoglycerate kinase, putative [Arabidopsis thaliana] (TAIR"
MSGI1_63789	NODE_17056_length_198_cov_10.055555	0	0	20.8	10.2	0	0	-5.4	0	signalling.receptor kinases.thaumatin like	"receptor serine/threonine kinase, putative Encodes a Protease inhibitor/seed storage/LTP family protein similar to receptor serine/threonine kinase, putative [Arabidopsis thaliana] (TAIR:AT4G18250.1); similar to PR5K (PR5-like receptor kinase), kinase/ t"
MSGI1_63789	NODE_17056_length_198_cov_10.055555	0	0	20.8	10.2	0	0	-5.4	0	signalling.receptor kinases.thaumatin like	"receptor serine/threonine kinase, putative Encodes a Protease inhibitor/seed storage/LTP family protein similar to receptor serine/threonine kinase, putative [Arabidopsis thaliana] (TAIR:AT4G18250.1); similar to PR5K (PR5-like receptor kinase), kinase/ t"
MSGI1_63789	NODE_17056_length_198_cov_10.055555	0	0	20.8	10.2	0	0	-5.4	0	cell wall	"receptor serine/threonine kinase, putative Encodes a Protease inhibitor/seed storage/LTP family protein similar to receptor serine/threonine kinase, putative [Arabidopsis thaliana] (TAIR:AT4G18250.1); similar to PR5K (PR5-like receptor kinase), kinase/ t"
MSGI1_63789	NODE_17056_length_198_cov_10.055555	0	0	20.8	10.2	0	0	-5.4	0	cell wall	"receptor serine/threonine kinase, putative Encodes a Protease inhibitor/seed storage/LTP family protein similar to receptor serine/threonine kinase, putative [Arabidopsis thaliana] (TAIR:AT4G18250.1); similar to PR5K (PR5-like receptor kinase), kinase/ t"
MSGI1_39848	NODE_17058_length_296_cov_11.949325	14.7	22.7	4.3	3.9	0	0	0	2.5	RNA.regulation of transcription.Alfin-like	"PHD finger family protein  similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT5G20510.1); similar to PHD1 [Glycine max] (GB:ABI97246.1); similar to PHD4 [Glycine max] (GB:ABI97243.1); contains InterPro domain Zinc finger, FYVE/PHD-type;"
MSGI1_85013	NODE_17059_length_154_cov_15.714286	0	0.2	0.5	128.4	0	8	0	-9.3	not assigned.unknown	not assigned.unknown
MSGI1_122262	NODE_17066_length_61_cov_97.803276	53.7	32.2	0	0	0	0	6.7	6	not assigned.unknown	not assigned.unknown
MSGI1_111835	NODE_17069_length_115_cov_12.739130	12.2	22	0.6	0.6	0	0	4.3	5.2	signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase	phosphatidylinositol-4-phosphate 5-kinase family protein  similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT3G14270.1); similar to 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding [Arabidopsis
MSGI1_27850	NODE_1707_length_392_cov_18.678572	1.4	5.5	27.5	13.8	0	0	-4.3	0	not assigned.unknown	not assigned.unknown
MSGI1_70246	NODE_17080_length_182_cov_44.642857	107.1	57.7	33.3	64.7	0	1	1.7	0	protein.synthesis.misc ribososomal protein	"40S ribosomal protein S2 (RPS2D)  Identical to 40S ribosomal protein S2-4 (RPS2D) [Arabidopsis Thaliana] (GB:Q9SCM3); similar to 40S ribosomal protein S2, putative [Arabidopsis thaliana] (TAIR:AT1G58684.1); similar to 40S ribosomal protein S2, putative ["
MSGI1_48214	NODE_17091_length_254_cov_39.645668	33.2	22.2	10.5	17	0	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_83735	NODE_17092_length_156_cov_56.448719	4	23.4	19.3	8.8	2.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_113629	NODE_17095_length_101_cov_25.277227	6.8	11.5	29.2	11.8	0	0	-2.1	0	transport.unspecified anions	"anion exchange family protein  Identical to Putative boron transporter 2 [Arabidopsis Thaliana] (GB:Q9M1P7); similar to BOR1 (REQUIRES HIGH BORON 1), anion exchanger [Arabidopsis thaliana] (TAIR:AT2G47160.1); similar to anion exchange family protein [Ara"
MSGI1_117090	NODE_17099_length_70_cov_100.914284	44.3	7.5	14.1	3.8	-2.6	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_4359	NODE_1712_length_1127_cov_159.070984	3	3.5	403	4.2	0	-6.6	-7.1	0	amino acid metabolism.degradation.branched-chain group.shared	"2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative  similar to 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogen"
MSGI1_98801	NODE_17120_length_135_cov_72.429626	38	6.4	6.4	8.4	-2.6	0	2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_64554	NODE_17124_length_196_cov_31.566326	29.3	77	20.4	53.8	1.4	1.4	0	0	secondary metabolism.phenylpropanoids	isochorismatase hydrolase family protein  similar to hypothetical protein [Plantago major] (GB:CAH59421.1); contains InterPro domain Isochorismatase hydrolase; (InterPro:IPR000868)
MSGI1_68892	NODE_17128_length_185_cov_8.048649	12.9	0.3	6.9	0.6	-5.4	0	0	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	SHN1/WIN1 (SHINE1); DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2
MSGI1_68892	NODE_17128_length_185_cov_8.048649	12.9	0.3	6.9	0.6	-5.4	0	0	0	hormone metabolism.ethylene.signal transduction	SHN1/WIN1 (SHINE1); DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2
MSGI1_80137	NODE_1713_length_162_cov_286.462952	35.9	299.3	0	0	3.1	0	6.2	9.2	not assigned.unknown	not assigned.unknown
MSGI1_103160	NODE_17145_length_130_cov_42.653847	5.1	21.3	39.9	11.8	0	-1.8	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_108892	NODE_17159_length_124_cov_7.088710	0.1	0.1	13.9	5.4	0	0	-7.1	0	not assigned.unknown	not assigned.unknown
MSGI1_122260	NODE_17159_length_61_cov_73.344261	35.4	45.7	2	1.2	0	0	4.1	5.3	not assigned.unknown	not assigned.unknown
MSGI1_77311	NODE_17163_length_167_cov_121.556885	125.1	124.5	60.4	67	0	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_43727	NODE_17164_length_275_cov_22.370909	12.3	19.3	0	0	0	0	4.6	5.3	nucleotide metabolism.synthesis.pyrimidine.UMP Synthase	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)  Identical to Uridine 5'-monophosphate synthase (UMP synthase) [Includes: Orotate phosphoribosyltransferase (EC 2.4.2.10) (OPRTase); Orotidine 5'- phosphate decarboxylase (EC 4.1.1.23) (OMPd
MSGI1_98800	NODE_17166_length_135_cov_4.296296	0	0	11.6	9	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_7990	NODE_17169_length_857_cov_16.075846	22.9	0.9	0.4	0.1	-4.7	0	5.8	0	stress.biotic	"transferase family protein  similar to CHAT (ACETYL COA:(Z)-3-HEXEN-1-OL ACETYLTRANSFERASE), acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase [Arabidopsis thaliana] (TAIR:AT3G03480.1); similar to benzoyl coenzyme A: benzyl alcohol benzoyl transferase [Petun"
MSGI1_60648	NODE_17174_length_207_cov_10.816425	1.3	4.6	16.3	4.3	0	0	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_63788	NODE_17187_length_198_cov_11.338384	6.4	11.6	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_56704	NODE_17192_length_220_cov_14.063637	19.7	13.4	3.6	2.1	0	0	2.5	0	stress.abiotic.heat	HSP70 (heat shock protein 70); ATP binding  similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G
MSGI1_106908	NODE_17194_length_126_cov_7.341270	25.4	3	6	4	-3.1	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_93288	NODE_172_length_142_cov_147.535217	189.1	142.7	90.2	143.6	0	0	1.1	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L37a (RPL37aB)  Identical to Putative 60S ribosomal protein L37a-1 (RPL37AB) [Arabidopsis Thaliana] (GB:Q9SRK6); similar to 60S ribosomal protein L37a (RPL37aC) [Arabidopsis thaliana] (TAIR:AT3G60245.1); similar to 60S ribosomal prot
MSGI1_6935	NODE_1720_length_913_cov_11.987952	8.5	88.7	37.7	81.6	3.4	1.1	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_73432	NODE_17202_length_175_cov_13.760000	4.6	13.5	17.3	1.9	0	-3.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_53204	NODE_17202_length_233_cov_5.768240	0	0	13.1	7	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_50002	NODE_17206_length_246_cov_7.443089	6.9	13.6	34.7	15.5	0	0	-2.3	0	cell wall.cellulose synthesis.cellulose synthase	"CESA3 (CELLULASE SYNTHASE 3); cellulose synthase/ transferase, transferring glycosyl groups cellulose synthase. Involved in defense signaling. Identical to Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC 2.4.1.12) (AtCesA-3) (Constitutive expr"
MSGI1_57250	NODE_17208_length_218_cov_20.614679	1.6	14.9	3.5	5.6	3.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_105937	NODE_17215_length_127_cov_32.551182	31.1	22.2	0.5	0.3	0	0	6	6.2	secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA reductase	"HMG1 (3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE) Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in l"
MSGI1_113163	NODE_17219_length_104_cov_131.778839	56.5	113.9	72.4	114.4	1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_60647	NODE_17229_length_207_cov_11.333333	7.4	5.1	26.3	3.4	0	-3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_122253	NODE_17231_length_61_cov_61.081966	42	34.9	0	0	0	0	6.4	6.1	not assigned.unknown	not assigned.unknown
MSGI1_6287	NODE_17238_length_954_cov_26.595388	9.8	31.2	17.8	8.5	1.7	0	0	1.9	RNA.regulation of transcription.GRAS transcription factor family	scarecrow-like transcription factor 11 (SCL11)  similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G46600.1); similar to GRAS4 [Solanum lycopersicum] (GB:ABD72960.1); contains InterPro domain GRAS transcription factor
MSGI1_6287	NODE_17238_length_954_cov_26.595388	9.8	31.2	17.8	8.5	1.7	0	0	1.9	development.unspecified	scarecrow-like transcription factor 11 (SCL11)  similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G46600.1); similar to GRAS4 [Solanum lycopersicum] (GB:ABD72960.1); contains InterPro domain GRAS transcription factor
MSGI1_71540	NODE_17248_length_179_cov_17.335196	6.1	11.5	24.9	7.7	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_112790	NODE_17253_length_107_cov_28.523365	13.2	40.3	4.1	19.8	1.6	2.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_46303	NODE_17258_length_263_cov_25.026615	30.6	28	0.1	0	0	0	8.3	5.8	not assigned.unknown	not assigned.unknown
MSGI1_58163	NODE_17260_length_215_cov_10.958139	1.2	0.6	26	0.2	0	-7	-4.4	0	not assigned.unknown	not assigned.unknown
MSGI1_30026	NODE_17269_length_369_cov_41.371273	32.7	10.9	9.7	9.4	-1.6	0	1.8	0	cell wall	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41800.1); similar to Os03g0807700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051644.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); contains InterPro domain Galactose-binding l
MSGI1_110936	NODE_17272_length_122_cov_10.991803	12	11.6	97.3	12.9	0	-2.9	-3	0	development.unspecified	caleosin-related family protein  similar to caleosin-related family protein [Arabidopsis thaliana] (TAIR:AT1G70670.1); similar to Os06g0254700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057304.1); similar to putative ABA-induced protein [Cynodon d
MSGI1_98028	NODE_17274_length_136_cov_48.875000	46	5.3	15.8	4.8	-3.1	0	1.5	0	cell wall.degradation.pectate lyases and polygalacturonases	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G41870.1); similar to Os05g0587000 [Oryz
MSGI1_26637	NODE_17279_length_406_cov_9.100986	14.3	16.5	2.4	1.4	0	0	0	3.6	not assigned.unknown	not assigned.unknown
MSGI1_107877	NODE_17294_length_125_cov_5.864000	0.5	0	11.7	7.3	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_39642	NODE_1730_length_297_cov_59.481480	162.9	99.3	61.9	110.5	0	0	1.4	0	cell.unspecified	nascent polypeptide-associated complex (NAC) domain-containing protein  Identical to Nascent polypeptide-associated complex subunit alpha-like protein 3 (NAC-alpha-like protein 3) (Alpha-NAC-like protein 3) [Arabidopsis Thaliana] (GB:Q6ICZ8;GB:Q9FFY7); s
MSGI1_84374	NODE_17307_length_155_cov_5.154839	6	15.8	27	13	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_104064	NODE_17312_length_129_cov_6.534883	0.1	0.3	1.3	14.2	0	3.4	0	-5.6	not assigned.unknown	not assigned.unknown
MSGI1_112968	NODE_17319_length_106_cov_11.084906	14.7	16.1	0	0	0	0	4.9	5	not assigned.unknown	not assigned.unknown
MSGI1_113351	NODE_17322_length_103_cov_298.961151	127.1	207.2	38.4	121.6	0	1.7	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_50247	NODE_17327_length_245_cov_5.530612	0.7	0.8	12.3	1.3	0	0	-4.1	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase, putative  similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to LOX1 (Lipoxygenase 1), lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G55020.1); similar to lipoxygenase, putati"
MSGI1_60350	NODE_17332_length_208_cov_42.721153	32.1	15.1	4.9	4.1	0	0	2.7	0	PS.calvin cyle.seduheptulose bisphosphatase	"SBPASE (sedoheptulose-bisphosphatase); phosphoric ester hydrolase Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate u"
MSGI1_122249	NODE_17333_length_61_cov_32.475410	18.8	14	0	0.4	0	0	5.2	5.1	RNA.regulation of transcription.GRAS transcription factor family	"RGA1 (REPRESSOR OF GA1-3 1); transcription factor Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptio"
MSGI1_37815	NODE_17338_length_308_cov_9.564935	3.8	0.4	16.3	25.1	0	0	0	-6	nucleotide metabolism.degradation	inosine-uridine preferring nucleoside hydrolase family protein  similar to inosine-uridine preferring nucleoside hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G18860.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96887.1); contains
MSGI1_73897	NODE_17346_length_174_cov_9.678161	11.5	14.6	0.6	0.4	0	0	4.3	5.2	gluconeogenese/ glyoxylate cycle.pyruvate dikinase	"PPDK (PYRUVATE ORTHOPHOSPHATE DIKINASE); kinase/ pyruvate, phosphate dikinase The product of this long transcript was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. They were al"
MSGI1_85620	NODE_17354_length_153_cov_19.647058	8.9	12.6	0.2	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_96421	NODE_17358_length_138_cov_100.710144	21.8	13.5	0	0	0	0	5.4	4.8	not assigned.unknown	not assigned.unknown
MSGI1_26728	NODE_17361_length_405_cov_10.041975	69.2	17.9	15.5	14.7	-2	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_63785	NODE_17365_length_198_cov_12.151515	1.1	6.4	22.1	16.8	0	0	-4.3	0	not assigned.unknown	not assigned.unknown
MSGI1_46899	NODE_17366_length_260_cov_9.673077	0	0.5	21.6	6.4	0	0	-5.4	0	not assigned.unknown	not assigned.unknown
MSGI1_47735	NODE_17375_length_256_cov_20.457031	6.6	15.9	12.4	0.9	0	-3.8	0	4.1	signalling.receptor kinases.crinkly like	"protein kinase, putative  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G55950.1); similar to cytokinin-regulated kinase 1 [Nicotiana tabacum] (GB:AAG25966.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009);"
MSGI1_64901	NODE_17376_length_195_cov_19.753845	5	1.3	38.8	7.2	0	-2.4	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_107876	NODE_17385_length_125_cov_12.488000	0.4	1.1	26.6	0.8	0	-5.1	-6.1	0	not assigned.unknown	not assigned.unknown
MSGI1_12704	NODE_17393_length_667_cov_51.592205	34.5	54.3	25.6	61.1	0	1.3	0	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	ATHB6 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 6); transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Identical to Homeobox-leucine zipper protein ATHB-6 (Homeodomain transcription factor ATHB-6) (HD-ZIP protein ATHB-6) (
MSGI1_69792	NODE_17394_length_183_cov_375.092896	217	2.1	37.1	1.4	-6.7	-4.7	2.5	0	cell wall.modification	"EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4); hydrolase, acting on glycosyl bonds EXGT-A4, endoxyloglucan transferase, Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 5 precursor (EC 2.4.1.207) (At-XTH5) (XTH-5) (XTH5) [Arabidopsis Tha"
MSGI1_108890	NODE_17398_length_124_cov_25.290323	26.6	19.2	2.9	13	0	0	3.2	0	amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoserine aminotransferase	"phosphoserine aminotransferase, putative  similar to PSAT (phosphoserine aminotransferase), phosphoserine transaminase [Arabidopsis thaliana] (TAIR:AT4G35630.1); similar to phosphoserine aminotransferase [Medicago truncatula] (GB:ABE77665.1); contains In"
MSGI1_14460	NODE_17398_length_617_cov_18.763371	12.6	12.2	0.2	0.3	0	0	6	5.3	not assigned.unknown	not assigned.unknown
MSGI1_114172	NODE_17421_length_96_cov_33.916668	24.8	2.2	5.9	2.2	-3.5	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_64900	NODE_17426_length_195_cov_90.553848	27.1	53.1	38.8	16.8	0	0	0	1.7	not assigned.unknown	not assigned.unknown
MSGI1_116421	NODE_17446_length_75_cov_47.493332	38.7	1.3	5.7	1.1	-4.9	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_48212	NODE_17448_length_254_cov_16.748032	0.5	4.8	29.8	1.4	0	-4.4	-5.9	0	not assigned.unknown	not assigned.unknown
MSGI1_65640	NODE_17457_length_193_cov_35.134716	35.9	56.8	12.8	44.9	0	1.8	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_103158	NODE_17459_length_130_cov_17.200001	16.5	14.7	0	0	0	0	5	4.9	not assigned.unknown	not assigned.unknown
MSGI1_122241	NODE_17464_length_61_cov_23.262295	12.3	6.7	0	0	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_86278	NODE_17475_length_152_cov_79.980263	78.1	66.7	34.7	111	0	1.7	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_80136	NODE_17478_length_162_cov_14.759259	7.2	3.1	11.6	0.5	0	-4.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_36595	NODE_17491_length_316_cov_218.177216	131.1	98.2	59	90.6	0	0	1.2	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S14 (RPS14B)  Identical to 40S ribosomal protein S14-2 (RPS14B) [Arabidopsis Thaliana] (GB:Q9CAX6); Identical to 40S ribosomal protein S14-1 (RPS14A) [Arabidopsis Thaliana] (GB:Q9SIH0); similar to 40S ribosomal protein S14 (RPS14A) [
MSGI1_13828	NODE_17493_length_635_cov_109.102364	88.6	41.6	56.7	20.2	-1.1	-1.5	0	0	hormone metabolism.jasmonate.synthesis-degradation.allene oxidase synthase	AOS (ALLENE OXIDE SYNTHASE); hydro-lyase/ oxygen binding Encodes a member of the  cytochrome p450 CYP74 gene family that functions as an allene oxide synthase. This enzyme catalyzes dehydration of the hydroperoxide to an unstable allene oxide in the JA b
MSGI1_53502	NODE_17495_length_232_cov_14.090517	4.3	5.7	38.5	4.4	0	-3.1	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_61695	NODE_1750_length_204_cov_9.573529	5.4	6.2	22.9	20.6	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_112789	NODE_17500_length_107_cov_123.345795	51.3	87.9	108.3	72.2	0	0	-1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_98797	NODE_17505_length_135_cov_125.229630	118.2	129.4	38.4	57.6	0	0	1.6	1.2	not assigned.unknown	not assigned.unknown
MSGI1_41079	NODE_17509_length_289_cov_16.138409	11	17.3	35.8	18.9	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_23848	NODE_17511_length_443_cov_11.367946	16	1.7	12.2	1.7	-3.2	0	0	0	hormone metabolism.ethylene.synthesis-degradation	"2A6  similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G03400.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123)"
MSGI1_98796	NODE_17516_length_135_cov_21.496296	10.8	7.7	0	0	0	0	4.4	0	protein.synthesis.initiation	"EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E); RNA binding / translation initiation factor eIF4E protein.  The cum1 mutation affects the local spreading of CMV within the inoculated leaf, delaying accumulation of cucumber mosaic virus coat protein."
MSGI1_58162	NODE_17519_length_215_cov_12.367442	2.2	5.2	17.9	21.6	0	0	-3	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_62358	NODE_17523_length_202_cov_22.792080	10.3	10.1	0.2	1.3	0	0	5.7	0	not assigned.unknown	not assigned.unknown
MSGI1_122238	NODE_17528_length_61_cov_17.508196	7.6	8.8	30.7	19.4	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_3535	NODE_17542_length_1239_cov_60.980629	34.8	44.1	9.3	22.5	0	0	1.9	0	transport.misc	xanthine/uracil permease family protein  Identical to Nucleobase-ascorbate transporter 5 (AtNAT5) (NAT5) [Arabidopsis Thaliana] (GB:Q8RWE9;GB:Q9FGR4); similar to permease [Arabidopsis thaliana] (TAIR:AT5G62890.3); similar to xanthine/uracil permease famil
MSGI1_44710	NODE_17544_length_270_cov_9.248148	4.5	51.8	81.6	39.9	3.5	0	-4.2	0	hormone metabolism.auxin.induced-regulated-responsive-activated	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15450.1); similar to unknown [Glycine max] (GB:AAG00940.1); contains domain no description (G3D.3.60.20.10); contains domain N-terminal nucleophile aminohydrolases (Ntn hydrolases) (SSF56235)
MSGI1_122237	NODE_17547_length_61_cov_58.524590	11.7	16.9	0	0	0	0	4.5	5.1	not assigned.unknown	not assigned.unknown
MSGI1_87638	NODE_17548_length_150_cov_10.393333	33.4	18.4	12	8.3	0	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_9424	NODE_17549_length_785_cov_12.672611	21.9	2.9	5.4	2.7	-2.9	0	2	0	signalling.calcium	"IQD11 (IQ-domain 11); calmodulin binding  similar to IQD12 (IQ-domain 12), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G03960.1); similar to Os03g0355700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050136.1); similar to IQ calmodulin-bindin"
MSGI1_98026	NODE_17568_length_136_cov_2.992647	5	3.6	44.1	2.3	0	-4.3	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_39453	NODE_17575_length_298_cov_31.110739	52.5	30.3	15.3	15.3	0	0	1.8	0	DNA.synthesis/chromatin structure.histone	histone H2B  Identical to Histone H2B.11 (HTB4) [Arabidopsis Thaliana] (GB:P40283;GB:Q5PP00;GB:Q8LDE5;GB:Q9FJE5); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold;
MSGI1_37337	NODE_17575_length_311_cov_40.061092	20.8	17.7	3.5	12.1	0	0	2.6	0	cell wall.degradation.pectate lyases and polygalacturonases	"PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding polygalacturonase inhibiting protein 1 (PGIP1) mRNA, Identical to Polygalacturonase inhibitor 1 precursor (Polygalacturonase-inhibiting protein) (PGIP-1) (PGIP1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_45167	NODE_17585_length_268_cov_9.272388	2.4	5.4	40.2	6.7	0	-2.6	-4.1	0	development.unspecified	seven in absentia (SINA) family protein  Identical to E3 ubiquitin-protein ligase SINAT3 (EC 6.3.2.-) (Seven in absentia homolog 3) (SINAT3) [Arabidopsis Thaliana] (GB:Q84JL3;GB:Q8LFQ3;GB:Q9M359); similar to seven in absentia (SINA) family protein [Arabi
MSGI1_73426	NODE_17586_length_175_cov_3.417143	1.8	3.2	36.5	4.5	0	-3	-4.3	0	development.unspecified	seven in absentia (SINA) family protein  Identical to E3 ubiquitin-protein ligase SINAT3 (EC 6.3.2.-) (Seven in absentia homolog 3) (SINAT3) [Arabidopsis Thaliana] (GB:Q84JL3;GB:Q8LFQ3;GB:Q9M359); similar to seven in absentia (SINA) family protein [Arabi
MSGI1_122236	NODE_17590_length_61_cov_12.065574	13.1	2	1.2	0	0	0	3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_41819	NODE_17596_length_285_cov_18.705263	23.7	24.5	5.6	15.2	0	0	2.1	0	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G55530.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE78566.1); contains InterP"
MSGI1_32448	NODE_1760_length_347_cov_39.945244	0	0	99	49.4	0	0	-7.6	-6.6	not assigned.unknown	not assigned.unknown
MSGI1_91825	NODE_17602_length_144_cov_47.451389	10.5	46.5	0	0	2.1	0	0	6.5	not assigned.unknown	not assigned.unknown
MSGI1_78943	NODE_17605_length_164_cov_17.817074	1.4	5.1	20.5	3.6	0	-2.5	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_34251	NODE_17608_length_333_cov_161.018021	78	80.3	16.8	15.5	0	0	2.2	2.4	not assigned.unknown	not assigned.unknown
MSGI1_79539	NODE_17609_length_163_cov_7.177914	1.3	0	6.1	16.6	0	0	0	-5.1	nucleotide metabolism.degradation	inosine-uridine preferring nucleoside hydrolase family protein  similar to inosine-uridine preferring nucleoside hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G18890.1); similar to putative inosine-uridine preferring nucleoside hydrolase [Oryza
MSGI1_104062	NODE_17613_length_129_cov_8.821706	14.6	0.3	2.3	1.1	-5.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_112185	NODE_17615_length_112_cov_13.892858	5.4	3.7	28.5	1.2	0	-4.6	-2.4	0	protein.degradation.cysteine protease	"cysteine proteinase, putative  similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G48350.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (Int"
MSGI1_117446	NODE_17621_length_67_cov_16.119404	10.3	16.1	0.8	0.4	0	0	0	5.3	protein.postranslational modification	"protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G07140.1); similar to Os03g0295600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049825.1); similar to protein kinase family protein, putative, e"
MSGI1_55328	NODE_17626_length_225_cov_11.751111	3.3	0.4	27.8	1.9	0	-3.9	-3.1	0	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G47570.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsi"
MSGI1_55328	NODE_17626_length_225_cov_11.751111	3.3	0.4	27.8	1.9	0	-3.9	-3.1	0	signalling.receptor kinases.leucine rich repeat XII	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G47570.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsi"
MSGI1_39452	NODE_17636_length_298_cov_28.627518	16.9	79.1	44.1	61.8	2.2	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_72018	NODE_17643_length_178_cov_25.303371	0.1	1.3	68.2	14.9	0	-2.2	-9.4	-3.5	not assigned.unknown	not assigned.unknown
MSGI1_25546	NODE_17648_length_420_cov_19.542856	16.6	22.3	0.1	0.1	0	0	7.4	7.8	signalling.receptor kinases.leucine rich repeat VIII-1	"leucine-rich repeat transmembrane protein kinase, putative  similar to ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G01950.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis tha"
MSGI1_89675	NODE_17650_length_147_cov_13.829932	1.1	1.3	27.1	10.6	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_122230	NODE_17651_length_61_cov_78.475410	39.7	20.3	16.8	43.7	0	1.4	0	0	protein.synthesis.misc ribososomal protein	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome Encodes a cytoplasmic ribosomal protein. Identical to 60S ribosomal protein L3-1 (Protein EMBRYO DEFECTIVE 2207) (ARP1) [Arabidopsis Thaliana] (GB:P17094;GB:O82401;GB:Q42055;GB:Q9
MSGI1_85619	NODE_17657_length_153_cov_152.594772	110.9	50.2	40.7	23	-1.1	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_45393	NODE_17669_length_267_cov_46.700375	69	62.1	4.1	11.3	0	0	4.1	2.5	not assigned.unknown	not assigned.unknown
MSGI1_122223	NODE_17682_length_61_cov_23.196722	13.6	17.1	0	0	0	0	4.8	5.1	protein.degradation.serine protease	"Lon protease homolog 1, mitochondrial (LON)  Identical to Lon protease homolog 1, mitochondrial precursor (EC 3.4.21.-) (LON) [Arabidopsis Thaliana] (GB:O64948); similar to LON_ARA_ARA (Lon protease homolog gene), ATP binding / ATP-dependent peptidase/ s"
MSGI1_63780	NODE_17685_length_198_cov_8.020202	2.7	3.6	19.3	19.1	0	0	-2.8	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_122222	NODE_17686_length_61_cov_78.065575	53.5	37.9	20.3	21	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_113506	NODE_17692_length_102_cov_92.147057	27.6	20.5	127.2	32.1	0	-2	-2.2	0	major CHO metabolism.degradation.starch.starch cleavage	"BMY7/TR-BAMY (beta-amylase 7); beta-amylase  similar to CT-BMY (BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to beta-amylase 1 [Nicotiana langsdorffii x Nicotiana sanderae] (GB:AAY89374.1); similar to putative chloropl"
MSGI1_59707	NODE_17696_length_210_cov_11.095238	2.2	5.2	19.3	16.3	0	0	-3.1	0	misc.misc2	"epoxide hydrolase, putative  similar to epoxide hydrolase, putative [Arabidopsis thaliana] (TAIR:AT3G05600.1); similar to soluble epoxide hydrolase [Citrus jambhiri] (GB:BAD13534.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000"
MSGI1_43937	NODE_17696_length_274_cov_162.649628	75.4	30.1	99	33	-1.3	-1.6	0	0	development.late embryogenesis abundant	late embryogenesis abundant family protein / LEA family protein  similar to LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) [Arabidopsis thaliana] (TAIR:AT1G01470.1); similar to Os03g0843300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051862.1); similar to
MSGI1_69353	NODE_17699_length_184_cov_54.000000	29.9	75.8	155.3	73.3	1.3	-1.1	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_59114	NODE_177_length_212_cov_44.693398	36.3	26	10	13.2	0	0	1.9	0	cell. vesicle transport	clathrin adaptor complexes medium subunit-related  similar to delta-COP [Zea mays] (GB:AAF67098.1); similar to Os05g0310800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055159.1); similar to Os05g0311000 [Oryza sativa (japonica cultivar-group)] (GB
MSGI1_11159	NODE_17703_length_718_cov_41.864902	22.3	43.4	26	16.7	0	0	0	1.4	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY11 (WRKY DNA-binding protein 11); transcription factor member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae. Identical to Probable WRKY transcription factor 11 (WRKY DNA-binding protein 11) (
MSGI1_72524	NODE_17706_length_177_cov_6.666667	1.1	1.5	8.8	15.4	0	0	0	-3.4	not assigned.unknown	not assigned.unknown
MSGI1_113706	NODE_17707_length_100_cov_197.589996	51	45.2	19.1	53.2	0	1.5	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_79538	NODE_17714_length_163_cov_8.030675	9.5	12.1	2	0.9	0	0	0	3.7	not assigned.unknown	not assigned.unknown
MSGI1_104960	NODE_17717_length_128_cov_6.578125	0	0	12.6	4.5	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_95634	NODE_17717_length_139_cov_252.805756	149.8	93.2	36	84.8	0	1.2	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_71122	NODE_17719_length_180_cov_16.011110	16.6	10.5	2.8	9	0	0	2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_8468	NODE_1772_length_833_cov_29.813925	1.3	0.9	83.5	2.2	0	-5.2	-6	0	secondary metabolism.N misc.alkaloid-like	"tropinone reductase, putative / tropine dehydrogenase, putative  Identical to Putative tropinone reductase homolog At1g07440 (EC 1.1.1.-) [Arabidopsis Thaliana] (GB:Q9ASX2;GB:Q9LNW5); similar to short-chain dehydrogenase/reductase (SDR) family protein [A"
MSGI1_8468	NODE_1772_length_833_cov_29.813925	1.3	0.9	83.5	2.2	0	-5.2	-6	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"tropinone reductase, putative / tropine dehydrogenase, putative  Identical to Putative tropinone reductase homolog At1g07440 (EC 1.1.1.-) [Arabidopsis Thaliana] (GB:Q9ASX2;GB:Q9LNW5); similar to short-chain dehydrogenase/reductase (SDR) family protein [A"
MSGI1_111477	NODE_17720_length_118_cov_71.593224	63.5	33.5	16.6	12.7	0	0	1.9	0	PS.calvin cyle.FBPase	"fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative  Identical to Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D- fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase)"
MSGI1_21631	NODE_17721_length_475_cov_9.551579	8.7	1.3	20.2	2.1	0	-3.3	0	0	RNA.processing.ribonucleases	"ribonuclease T2 family protein  similar to RNS3 (RIBONUCLEASE 3), endoribonuclease [Arabidopsis thaliana] (TAIR:AT1G26820.1); similar to S-like ribonuclease [Prunus dulcis] (GB:AAG09465.1); contains InterPro domain Ribonuclease T2; (InterPro:IPR001568)"
MSGI1_115503	NODE_17727_length_83_cov_55.493977	41.4	3.1	7.1	0.7	-3.7	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_89674	NODE_17728_length_147_cov_64.156464	0.8	3.2	111	0.5	0	-7.8	-7.1	0	not assigned.unknown	not assigned.unknown
MSGI1_63123	NODE_17753_length_200_cov_31.610001	24.9	10.8	44	8.3	0	-2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_8313	NODE_1777_length_841_cov_38.661118	1.3	2.7	31.4	2.3	0	-3.8	-4.6	0	development.unspecified	seven in absentia (SINA) family protein  Identical to E3 ubiquitin-protein ligase SINAT3 (EC 6.3.2.-) (Seven in absentia homolog 3) (SINAT3) [Arabidopsis Thaliana] (GB:Q84JL3;GB:Q8LFQ3;GB:Q9M359); similar to seven in absentia (SINA) family protein [Arabi
MSGI1_91113	NODE_17779_length_145_cov_18.606897	1	2.3	30.2	10.7	0	0	-4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_98792	NODE_17785_length_135_cov_7.570370	2.4	1.8	17.3	4.6	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_14634	NODE_17787_length_613_cov_29.213703	38.8	19.1	14.5	9.3	0	0	1.4	0	cell wall.pectin*esterases.PME	ATPME1 (Arabidopsis thaliana pectin methylesterase 1); pectinesterase encodes a pectin methylesterase Identical to Pectinesterase-1 precursor (EC 3.1.1.11) (Pectin methylesterase 1) (PE 1) (PME1) [Arabidopsis Thaliana] (GB:Q43867); similar to pectinester
MSGI1_70675	NODE_17789_length_181_cov_22.861879	70.7	30.1	31.2	40.1	-1.2	0	1.2	0	mitochondrial electron transport / ATP synthesis.F1-ATPase	"mitochondrial ATP synthase g subunit family protein  similar to mitochondrial ATP synthase g subunit family protein [Arabidopsis thaliana] (TAIR:AT4G29480.1); similar to unknown [Solanum tuberosum] (GB:ABA40451.1); contains InterPro domain ATPase, F0 com"
MSGI1_39318	NODE_1779_length_299_cov_84.795990	56	118.5	96.8	118.1	1.1	0	0	0	RNA.regulation of transcription.Aux/IAA family	IAA18 (indoleacetic acid-induced protein 18); transcription factor  Identical to Auxin-responsive protein IAA18 (Indoleacetic acid-induced protein 18) (IAA18) [Arabidopsis Thaliana] (GB:O24408;GB:Q8L9I9); similar to PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1
MSGI1_39318	NODE_1779_length_299_cov_84.795990	56	118.5	96.8	118.1	1.1	0	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	IAA18 (indoleacetic acid-induced protein 18); transcription factor  Identical to Auxin-responsive protein IAA18 (Indoleacetic acid-induced protein 18) (IAA18) [Arabidopsis Thaliana] (GB:O24408;GB:Q8L9I9); similar to PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1
MSGI1_92554	NODE_17809_length_143_cov_11.839161	2.3	6.9	19.1	16.5	0	0	-3.1	0	misc.cytochrome P450	"CYP714A2 (cytochrome P450, family 714, subfamily A, polypeptide 2); oxygen binding member of CYP714A similar to CYP714A1 (cytochrome P450, family 714, subfamily A, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G24910.1); similar to Os12g"
MSGI1_111574	NODE_17811_length_117_cov_16.547009	4.1	12.1	0	0.3	0	0	0	5.3	not assigned.unknown	not assigned.unknown
MSGI1_5927	NODE_17813_length_977_cov_33.850563	49.5	0.1	5.4	0.1	-9	0	3.2	0	signalling.receptor kinases.legume-lectin	"lectin protein kinase, putative  similar to legume lectin family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G65600.1); similar to Protein kinase; Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE89762.1); sim"
MSGI1_112559	NODE_17818_length_109_cov_24.678900	9.5	19.3	0	0.3	0	0	0	6	not assigned.unknown	not assigned.unknown
MSGI1_14145	NODE_1782_length_626_cov_20.929712	5	9.4	24.3	30.2	0	0	-2.3	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_90388	NODE_17822_length_146_cov_16.671232	0	0.1	36.6	35.9	0	0	-6.2	-8.5	not assigned.unknown	not assigned.unknown
MSGI1_47089	NODE_17834_length_259_cov_37.196911	17	40.3	37.7	14.4	0	0	0	1.5	protein.postranslational modification	"ATN1; kinase/ protein threonine/tyrosine kinase encodes a protein with kinase domains, including catalytic domains for serine/threonine as well as tyrosine kinases. a member of multi-gene family and is expressed in all tissues examined. similar to protei"
MSGI1_22495	NODE_17845_length_463_cov_35.935204	13.8	21.2	0	0	0	0	4.8	5.4	not assigned.unknown	not assigned.unknown
MSGI1_91112	NODE_17846_length_145_cov_52.282757	15.4	9	1.4	2.4	0	0	3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_91111	NODE_17850_length_145_cov_10.179311	0	0	25.2	22.4	0	0	-5.7	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_117870	NODE_17850_length_64_cov_313.500000	33	43.7	14.8	45.4	0	1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_1681	NODE_1786_length_1651_cov_102.298004	77.3	58.9	6.6	4.7	0	0	3.5	3.6	not assigned.unknown	not assigned.unknown
MSGI1_97164	NODE_17861_length_137_cov_5.985402	2.4	2	11	16	0	0	0	-3	protein.degradation	"SPPA (signal peptide peptidase); protease IV/ serine-type endopeptidase Encodes a putative protease SppA (SppA). similar to signal peptide peptidase SppA, 67K type [Solibacter usitatus Ellin6076] (GB:YP_829050.1); similar to Os02g0728100 [Oryza sativa (j"
MSGI1_31057	NODE_17866_length_359_cov_40.493034	180.3	18.7	31.7	46.7	-3.3	0	2.5	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_26406	NODE_17890_length_409_cov_43.024448	65.3	25.4	22.2	29.7	-1.4	0	1.6	0	mitochondrial electron transport / ATP synthesis.F1-ATPase	"mitochondrial ATP synthase g subunit family protein  similar to mitochondrial ATP synthase g subunit family protein [Arabidopsis thaliana] (TAIR:AT4G29480.1); similar to unknown [Solanum tuberosum] (GB:ABA40451.1); contains InterPro domain ATPase, F0 com"
MSGI1_75811	NODE_17899_length_170_cov_11.347059	6.1	12.6	27.8	18.7	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_46299	NODE_17904_length_263_cov_20.536121	6.4	13.1	1	0.9	0	0	0	3.9	not assigned.unknown	not assigned.unknown
MSGI1_63122	NODE_1791_length_200_cov_435.845001	150.5	74.2	37.2	61	-1	0	2	0	major CHO metabolism.synthesis.starch.transporter	"AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding mitochondrial ADP/ATP carrier Identical to ADP,ATP carrier protein 1, mitochondrial precursor (ADP/ATP translocase 1) (Adenine nucleotide translocator 1) (ANT 1) (ANT1) [Arabidopsis Thaliana] (GB:P311"
MSGI1_63122	NODE_1791_length_200_cov_435.845001	150.5	74.2	37.2	61	-1	0	2	0	transport.metabolite transporters at the envelope membrane	"AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding mitochondrial ADP/ATP carrier Identical to ADP,ATP carrier protein 1, mitochondrial precursor (ADP/ATP translocase 1) (Adenine nucleotide translocator 1) (ANT 1) (ANT1) [Arabidopsis Thaliana] (GB:P311"
MSGI1_35745	NODE_17912_length_322_cov_7.822981	4.4	36.6	6.1	20.5	3.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_13665	NODE_17915_length_640_cov_19.956249	28	0.6	3.1	0.8	-5.5	0	3.2	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_13665	NODE_17915_length_640_cov_19.956249	28	0.6	3.1	0.8	-5.5	0	3.2	0	cell wall	"DELTA-TIP (delta tonoplast integral protein); water channel Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by"
MSGI1_13665	NODE_17915_length_640_cov_19.956249	28	0.6	3.1	0.8	-5.5	0	3.2	0	transport.Major Intrinsic Proteins.TIP	"DELTA-TIP (delta tonoplast integral protein); water channel Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by"
MSGI1_64181	NODE_17922_length_197_cov_12.522842	11.1	12.1	21.8	33.8	0	0	0	-1.5	protein.degradation.ubiquitin.proteasom	PAA2 (20S proteasome alpha subunit A2); peptidase Encodes 20S proteasome subunit PAA2 (PAA2). Identical to Proteasome subunit alpha type 6-B (EC 3.4.25.1) (Proteasome subunit alpha type 1) (20S proteasome alpha subunit A-2) (PAA2) [Arabidopsis Thaliana]
MSGI1_45165	NODE_17925_length_268_cov_39.339554	1.2	0.8	28.3	9	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_32315	NODE_17932_length_348_cov_13.491380	23.3	15.5	1.9	4.2	0	0	3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_102233	NODE_17938_length_131_cov_5.145038	0.1	0.2	4	12	0	0	0	-5.9	protein.synthesis.elongation	elongation factor 1-alpha / EF-1-alpha  Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A) (A4) [Arabidopsis Thaliana] (GB:P13905); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar
MSGI1_115314	NODE_17953_length_85_cov_6.164706	15.6	4.1	0.7	0.3	0	0	4.5	0	protein.synthesis.elongation	"EMB2726 (EMBRYO DEFECTIVE 2726); translation elongation factor  similar to translation elongation factor Ts (EF-Ts), putative [Arabidopsis thaliana] (TAIR:AT4G11120.1); similar to Os12g0541500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066956.1);"
MSGI1_122216	NODE_17958_length_61_cov_89.081970	27.6	49.6	6.8	30.5	0	2.2	2	0	not assigned.unknown	not assigned.unknown
MSGI1_78419	NODE_17959_length_165_cov_21.921211	9.4	22.6	41.3	7.3	0	-2.5	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_91823	NODE_17960_length_144_cov_57.083332	6.6	10.7	35.1	26.2	0	0	-2.4	0	stress.biotic	"secretory protein, putative  similar to plant basic secretory protein (BSP) family protein [Arabidopsis thaliana] (TAIR:AT2G15130.1); similar to NtPRp27 [Nicotiana tabacum] (GB:BAA81904.1); contains InterPro domain Plant Basic Secretory Protein; (InterPr"
MSGI1_49054	NODE_17967_length_250_cov_9.524000	16.5	0.6	3.3	0.3	-4.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_96419	NODE_17975_length_138_cov_9.101449	6.2	10.1	27.6	15.1	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_71537	NODE_17985_length_179_cov_24.458101	57.3	27	40.6	7.5	-1.1	-2.4	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_116420	NODE_17987_length_75_cov_45.013332	3	3.1	30.1	81.7	0	1.4	-3.3	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_84369	NODE_17999_length_155_cov_14.451612	0.2	1.5	36	3.5	0	-3.4	-7.5	0	not assigned.unknown	not assigned.unknown
MSGI1_17384	NODE_18003_length_550_cov_7.572727	0	0.4	19.1	21.3	0	0	-5.3	-5.7	cell wall	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39020.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39000.1); similar to protein kinase family protein [Arabidopsis t
MSGI1_17384	NODE_18003_length_550_cov_7.572727	0	0.4	19.1	21.3	0	0	-5.3	-5.7	signalling.receptor kinases.Catharanthus roseus-like RLK1	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39020.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39000.1); similar to protein kinase family protein [Arabidopsis t
MSGI1_79536	NODE_18004_length_163_cov_27.723927	0.1	0.5	28.2	69.3	0	1.3	-8.1	-7.1	not assigned.unknown	not assigned.unknown
MSGI1_39450	NODE_18004_length_298_cov_15.053691	12.1	19.9	29.9	7.7	0	-2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_43496	NODE_18015_length_276_cov_8.213768	2.2	0.4	24	0.6	0	-5.3	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_38743	NODE_18029_length_302_cov_42.956955	42.4	48.9	128.9	52	0	-1.3	-1.6	0	PS.lightreaction.photosystem I.PSI polypeptide subunits	"PSAE-2 (photosystem I subunit E-2) Encodes subunit E of photosystem I. Identical to Photosystem I reaction center subunit IV B, chloroplast precursor (PSI-E B) (PSAE2) [Arabidopsis Thaliana] (GB:Q9S714); similar to PSAE-1 (PSA E1 KNOCKOUT) [Arabidopsis t"
MSGI1_55616	NODE_18030_length_224_cov_5.553571	0.4	0.6	8.7	15.8	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_33434	NODE_18069_length_339_cov_36.109146	9.5	21	0	0.1	0	0	0	7.7	not assigned.unknown	not assigned.unknown
MSGI1_100480	NODE_18074_length_133_cov_172.300751	112.4	70	0.5	0.3	0	0	7.8	7.9	not assigned.unknown	not assigned.unknown
MSGI1_77897	NODE_18083_length_166_cov_7.114458	0.2	0.2	8.8	16.6	0	0	0	-6.4	not assigned.unknown	not assigned.unknown
MSGI1_29703	NODE_18084_length_372_cov_12.153226	5.3	17.3	11.2	1.8	0	0	0	3.3	not assigned.unknown	not assigned.unknown
MSGI1_59705	NODE_1809_length_210_cov_15.890476	5.2	2.8	23.3	6.7	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_105927	NODE_18097_length_127_cov_7.047244	0.7	1	17.3	3.5	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_39640	NODE_18097_length_297_cov_23.299664	6.2	16.2	1.6	2.5	0	0	0	2.7	not assigned.unknown	not assigned.unknown
MSGI1_56699	NODE_18102_length_220_cov_12.345454	3	2.8	14.2	1.6	0	-3.1	0	0	protein.postranslational modification	"SNRK2-7/SNRK2.7/SRK2F (SNF1-RELATED PROTEIN KINASE 2-7, SNF1-RELATED PROTEIN KINASE 2.7); kinase encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. similar to OST1"
MSGI1_18581	NODE_18104_length_529_cov_23.045368	9.4	5.2	13.9	39.6	0	1.5	0	-2.9	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G62510.1); similar to 14 kDa polypeptide [Catharanthus rose
MSGI1_99601	NODE_18118_length_134_cov_88.283585	7	44	23.4	14.7	2.7	0	0	1.6	signalling.light	PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1); transcription factor Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway. similar to SCL21 (SCARECROW-LIKE 21
MSGI1_99601	NODE_18118_length_134_cov_88.283585	7	44	23.4	14.7	2.7	0	0	1.6	RNA.regulation of transcription.GRAS transcription factor family	PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1); transcription factor Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway. similar to SCL21 (SCARECROW-LIKE 21
MSGI1_89671	NODE_18129_length_147_cov_10.823130	2.1	0.8	24.3	1.9	0	-3.7	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_60644	NODE_1813_length_207_cov_23.613527	39	67	19.2	61.1	0	1.7	0	0	cell wall.cell wall proteins.AGPs	FLA12 (fasciclin-like arabinogalactan-protein 12)  Identical to Fasciclin-like arabinogalactan protein 12 precursor (FLA12) [Arabidopsis Thaliana] (GB:Q8LEE9;GB:Q94EG7;GB:Q9FKJ8); similar to FLA11 (fasciclin-like arabinogalactan-protein 11) [Arabidopsis t
MSGI1_64898	NODE_18136_length_195_cov_15.297436	0.3	0.3	25.8	8	0	0	-6.4	0	signalling.receptor kinases.wheat LRK10 like	"serine/threonine protein kinase, putative  similar to serine/threonine protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G38240.1); similar to receptor serine/threonine kinase PR5K (GB:AAC49208.1); contains InterPro domain Serine/threonine protein"
MSGI1_122213	NODE_18136_length_61_cov_43.901638	9.9	23	0	0	0	0	0	5.5	not assigned.unknown	not assigned.unknown
MSGI1_122212	NODE_18166_length_61_cov_191.377045	159.6	124.6	34.3	149.5	0	2.1	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_89670	NODE_18172_length_147_cov_51.843536	62.9	44.8	58.6	123.7	0	1.1	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_52428	NODE_18175_length_236_cov_7.423729	0	0	8	19.9	0	0	0	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_113705	NODE_18199_length_100_cov_14.010000	0	0	16.4	2.2	0	-2.9	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_69351	NODE_1820_length_184_cov_122.320656	0.5	0.1	230.1	0.6	0	-8.6	-8.8	0	not assigned.unknown	not assigned.unknown
MSGI1_35612	NODE_18209_length_323_cov_10.656346	3	1.6	40.7	1.4	0	-4.9	-3.8	0	transport.amino acids	"AAP7 (amino acid permease 7); amino acid permease Encodes nonfunctional amino acid transporter.  AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of"
MSGI1_34957	NODE_1821_length_328_cov_261.628052	318.7	154.7	6.6	7.8	-1	0	5.6	4.3	PS.lightreaction.photosystem II.LHC-II	"LHB1B1 (Photosystem II light harvesting complex gene 1.4); chlorophyll binding Photosystem II type I chlorophyll            a/b-binding protein similar to CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G2993"
MSGI1_66015	NODE_18227_length_192_cov_11.619792	3	7.6	17.8	6.7	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_34820	NODE_18238_length_329_cov_26.103344	0.1	0.4	63.2	0	0	-7	-9.3	0	RNA.regulation of transcription.NAC domain transcription factor family	"NAP (NAC-LIKE, ACTIVATED BY AP3/PI); transcription factor Encodes a member of the NAC transcription factor gene family.  It is expressed in floral primordia and upregulated by AP3 and PI.  Its expression is associated with leaf senescence. Identical to N"
MSGI1_34820	NODE_18238_length_329_cov_26.103344	0.1	0.4	63.2	0	0	-7	-9.3	0	development.unspecified	"NAP (NAC-LIKE, ACTIVATED BY AP3/PI); transcription factor Encodes a member of the NAC transcription factor gene family.  It is expressed in floral primordia and upregulated by AP3 and PI.  Its expression is associated with leaf senescence. Identical to N"
MSGI1_34820	NODE_18238_length_329_cov_26.103344	0.1	0.4	63.2	0	0	-7	-9.3	0	cell wall	"NAP (NAC-LIKE, ACTIVATED BY AP3/PI); transcription factor Encodes a member of the NAC transcription factor gene family.  It is expressed in floral primordia and upregulated by AP3 and PI.  Its expression is associated with leaf senescence. Identical to N"
MSGI1_34820	NODE_18238_length_329_cov_26.103344	0.1	0.4	63.2	0	0	-7	-9.3	0	cell wall	"NAP (NAC-LIKE, ACTIVATED BY AP3/PI); transcription factor Encodes a member of the NAC transcription factor gene family.  It is expressed in floral primordia and upregulated by AP3 and PI.  Its expression is associated with leaf senescence. Identical to N"
MSGI1_112558	NODE_1825_length_109_cov_101.587158	90.8	77.7	22.4	23.4	0	0	2	1.7	protein.degradation.ubiquitin.proteasom	"RPT2A (regulatory particle triple-A 2A); ATPase 26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA, similar to 26S protease regulatory complex subunit 4, putative [Arabidopsis thaliana] (TAIR:AT2G20140.1); similar to AAA ATPase; 26S proteasome subunit"
MSGI1_33842	NODE_18258_length_336_cov_59.223213	27.2	40.9	24.3	5.7	0	-2.1	0	2.8	not assigned.unknown	not assigned.unknown
MSGI1_98787	NODE_18264_length_135_cov_7.940741	4.3	13.5	21.3	3.3	0	-2.7	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_116419	NODE_18267_length_75_cov_20.306667	0	0	36.5	4.1	0	-3.2	-6.2	0	not assigned.unknown	not assigned.unknown
MSGI1_13406	NODE_18286_length_647_cov_45.873260	30	20.5	7.2	20.8	0	0	2.1	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L4/L1 (RPL4A)  Identical to 60S ribosomal protein L4-1 (L1) (RPL4A) [Arabidopsis Thaliana] (GB:Q9SF40); similar to 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] (TAIR:AT5G02870.1); similar to putative 60S ribosomal prot
MSGI1_122208	NODE_18299_length_61_cov_77.016396	7.3	12.9	0	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_26096	NODE_18300_length_413_cov_18.949152	3.3	5.9	13.4	26.2	0	0	0	-2.2	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_26096	NODE_18300_length_413_cov_18.949152	3.3	5.9	13.4	26.2	0	0	0	-2.2	hormone metabolism.gibberelin.synthesis-degradation	"2-oxoglutarate-dependent dioxygenase, putative  similar to AOP1 (2-oxoglutarate?dependent dioxygenase 1.1), oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of on"
MSGI1_46295	NODE_18301_length_263_cov_24.904943	15.7	16.7	0	0	0	0	5	5.1	not assigned.unknown	not assigned.unknown
MSGI1_52711	NODE_18310_length_235_cov_20.523405	1	1.1	19.5	12.7	0	0	-4.3	-3.5	not assigned.unknown	not assigned.unknown
MSGI1_63462	NODE_18332_length_199_cov_37.195980	12	38.7	35.6	43.7	1.7	0	-1.6	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1); hydrolase, hydrolyzing O-glycosyl compounds  Identical to Probable glycosyltransferase At1g55740 (EC 2.4.1.-) [Arabidopsis Thaliana] (GB:Q84VX0;GB:Q9LFZ7); similar to ATSIP2 (ARABIDOPSIS THALIANA SEED IMBI"
MSGI1_71535	NODE_18338_length_179_cov_72.603355	18.2	34.1	1.2	0.2	0	0	3.9	7.4	not assigned.unknown	not assigned.unknown
MSGI1_83727	NODE_18358_length_156_cov_15.442307	5.4	6.2	23.1	22.9	0	0	-2.1	0	cell. vesicle transport	"coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative  similar to coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative [Arabidopsis thaliana] (TAIR:AT4G31490.1); similar to Adaptin N terminal re"
MSGI1_27762	NODE_18364_length_393_cov_13.806616	1.4	8.9	26.5	3.2	0	-3	-4.2	0	RNA.regulation of transcription.NAC domain transcription factor family	"ANAC047 (Arabidopsis NAC domain containing protein 47); transcription factor  similar to NAM (Arabidopsis NAC domain containing protein 18), transcription factor [Arabidopsis thaliana] (TAIR:AT1G52880.1); similar to NAC domain protein [Cymbidium hybrid c"
MSGI1_27762	NODE_18364_length_393_cov_13.806616	1.4	8.9	26.5	3.2	0	-3	-4.2	0	cell wall	"ANAC047 (Arabidopsis NAC domain containing protein 47); transcription factor  similar to NAM (Arabidopsis NAC domain containing protein 18), transcription factor [Arabidopsis thaliana] (TAIR:AT1G52880.1); similar to NAC domain protein [Cymbidium hybrid c"
MSGI1_27762	NODE_18364_length_393_cov_13.806616	1.4	8.9	26.5	3.2	0	-3	-4.2	0	cell wall	"ANAC047 (Arabidopsis NAC domain containing protein 47); transcription factor  similar to NAM (Arabidopsis NAC domain containing protein 18), transcription factor [Arabidopsis thaliana] (TAIR:AT1G52880.1); similar to NAC domain protein [Cymbidium hybrid c"
MSGI1_27762	NODE_18364_length_393_cov_13.806616	1.4	8.9	26.5	3.2	0	-3	-4.2	0	development.unspecified	"ANAC047 (Arabidopsis NAC domain containing protein 47); transcription factor  similar to NAM (Arabidopsis NAC domain containing protein 18), transcription factor [Arabidopsis thaliana] (TAIR:AT1G52880.1); similar to NAC domain protein [Cymbidium hybrid c"
MSGI1_51402	NODE_18371_length_240_cov_10.237500	1	5.1	14.7	15.2	0	0	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_41818	NODE_18373_length_285_cov_8.291228	0	0	18.8	4.6	0	0	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_88993	NODE_18379_length_148_cov_14.013514	15.2	7.3	0.9	0.2	0	0	4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_104055	NODE_18391_length_129_cov_10.255814	2.4	1.3	21.5	26.9	0	0	-3.2	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_122201	NODE_18420_length_61_cov_52.114754	34.3	28.6	116.9	69.6	0	0	-1.8	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_84363	NODE_18422_length_155_cov_14.135484	1.8	0.8	1.8	32.8	0	4.2	0	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_43307	NODE_18450_length_277_cov_9.462094	4	7.8	9	29.9	0	1.7	0	-1.9	transport.misc	MATE efflux family protein  similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G12950.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT5G38030.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAI
MSGI1_29243	NODE_18452_length_377_cov_10.196286	0	0	35	27.6	0	0	-6.1	-5.8	not assigned.unknown	not assigned.unknown
MSGI1_68077	NODE_18457_length_187_cov_13.010695	1.5	0.5	12.9	21.8	0	0	0	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_6704	NODE_18461_length_927_cov_52.366776	21.2	25.9	85.8	18.6	0	-2.2	-2	0	fermentation.aldehyde dehydrogenase	ALDH7B4 (ALDEHYDE DEHYDROGENASE 7B4); 3-chloroallyl aldehyde dehydrogenase Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 7B4 (EC 1.2.1.3) (Antiquitin-1) (Turgor- responsive ALDH) (ALDH7B4) [Arabidopsis Thaliana] (GB:Q9SYG7;GB:Q546B7); simila
MSGI1_117704	NODE_18464_length_65_cov_78.446152	9.4	10.3	27	34.7	0	0	0	-1.8	stress.abiotic.heat	ATJ3 (Arabidopsis thaliana DnaJ homologue 3) homologous to the co-chaperon DNAJ protein from E coli Identical to Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) (ATJ3) [Arabidopsis Thaliana] (GB:Q94AW8;GB:O22663;GB:Q42530); similar to ATJ2 (Arabidopsis thaliana
MSGI1_66389	NODE_18469_length_191_cov_9.256544	0	0	10.6	15.3	0	0	0	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_122196	NODE_18483_length_61_cov_21.836065	47.9	12.8	28.7	15.6	-1.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_52980	NODE_18484_length_234_cov_45.769230	23.9	9.7	5.9	3.1	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_84361	NODE_18489_length_155_cov_7.877419	0.7	0.7	13.3	3.5	0	0	-4.2	0	cell wall	"GATL1/GLZ1/PARVUS (Galacturonosyltransferase-like 1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with  putative galacturonosyltransferase act"
MSGI1_84361	NODE_18489_length_155_cov_7.877419	0.7	0.7	13.3	3.5	0	0	-4.2	0	misc.UDP glucosyl and glucoronyl transferases	"GATL1/GLZ1/PARVUS (Galacturonosyltransferase-like 1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with  putative galacturonosyltransferase act"
MSGI1_122194	NODE_18499_length_61_cov_83.590164	18.1	15.3	94.9	40.4	0	-1.2	-2.4	-1.4	cell wall.cellulose synthesis.cellulose synthase	"CESA3 (CELLULASE SYNTHASE 3); cellulose synthase/ transferase, transferring glycosyl groups cellulose synthase. Involved in defense signaling. Identical to Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC 2.4.1.12) (AtCesA-3) (Constitutive expr"
MSGI1_51401	NODE_18517_length_240_cov_17.333334	2.8	19.3	3.2	5.5	2.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_91104	NODE_18533_length_145_cov_37.703449	1.4	1.4	75.7	28	0	-1.4	-5.8	-4.3	not assigned.unknown	not assigned.unknown
MSGI1_81856	NODE_18546_length_159_cov_88.106918	5.7	39.1	16.1	48.1	2.8	1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_23198	NODE_1855_length_454_cov_22.048458	16.7	31.3	5.5	7.9	0	0	0	2	transport.metal	"ZIP4 (ZINC TRANSPORTER 4 PRECURSOR); cation transporter A member of Zrt- and Irt-related protein (ZIP) family.  transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficien"
MSGI1_43722	NODE_18550_length_275_cov_26.396364	28.9	17	4.8	13.4	0	0	2.6	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S12 (RPS12C)  Identical to 40S ribosomal protein S12-2 (RPS12C) [Arabidopsis Thaliana] (GB:Q9SKZ3); similar to 40S ribosomal protein S12 (RPS12A) [Arabidopsis thaliana] (TAIR:AT1G15930.1); similar to Ribosomal protein L7Ae/L30e/S12e/
MSGI1_37031	NODE_18551_length_313_cov_40.309906	2.7	28.2	8	12.2	3.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_76845	NODE_18575_length_168_cov_18.452381	5.3	4.4	44.8	4.4	0	-3.3	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_63119	NODE_18582_length_200_cov_7.165000	8.1	7.9	25.1	5.6	0	-2.2	0	0	RNA.regulation of transcription.MYB domain transcription factor family	"MYB55 (myb domain protein 55); DNA binding / transcription factor Encodes a putative transcription factor (MYB55). similar to MYB61 (myb domain protein 61), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G09540.1); similar to MYB tran"
MSGI1_96416	NODE_18590_length_138_cov_11.152174	5.1	8.4	33.4	11.1	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_85613	NODE_18591_length_153_cov_9.052288	8.7	0.5	20.9	0.7	0	-4.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_94104	NODE_18598_length_141_cov_25.375887	0	0	47.6	33.5	0	0	-6.6	-6.1	not assigned.unknown	not assigned.unknown
MSGI1_51677	NODE_18612_length_239_cov_31.991632	7.6	10.2	41.1	3.2	0	-3.7	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_122186	NODE_18625_length_61_cov_5.967213	0	0	8.4	12.8	0	0	0	-4.7	misc.misc2	"oxidoreductase, zinc-binding dehydrogenase family protein  similar to oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT4G21580.1); similar to oxidoreductase, zinc-binding dehydrogenase family protein [Roseovarius n"
MSGI1_7397	NODE_1863_length_889_cov_15.321710	8.4	42.2	35	52	2.3	0	-2.1	0	RNA.regulation of transcription.MYB domain transcription factor family	MYB111 (myb domain protein 111); DNA binding / transcription factor Encodes a putative transcription factor (MYB48). Identical to Transcription factor MYB48 (Myb-related protein 48) (AtMYB48) (MYB48) [Arabidopsis Thaliana] (GB:Q9LX82;GB:Q4JL82;GB:Q67YJ3)
MSGI1_7397	NODE_1863_length_889_cov_15.321710	8.4	42.2	35	52	2.3	0	-2.1	0	cell wall	MYB111 (myb domain protein 111); DNA binding / transcription factor Encodes a putative transcription factor (MYB48). Identical to Transcription factor MYB48 (Myb-related protein 48) (AtMYB48) (MYB48) [Arabidopsis Thaliana] (GB:Q9LX82;GB:Q4JL82;GB:Q67YJ3)
MSGI1_89667	NODE_18636_length_147_cov_13.836735	6.4	2.6	13.3	0.5	0	-4.7	0	0	protein.degradation.cysteine protease	"cysteine proteinase, putative  similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT5G50260.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (Int"
MSGI1_111476	NODE_1864_length_118_cov_9.830508	1.1	2.8	24.8	19.4	0	0	-4.5	-2.8	not assigned.unknown	not assigned.unknown
MSGI1_16577	NODE_1864_length_566_cov_32.340988	42.5	46.1	92.5	76.3	0	0	-1.1	0	transport.metal	"YSL3 (YELLOW STRIPE LIKE 3); oligopeptide transporter  similar to YSL2 (YELLOW STRIPE LIKE 2), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G24380.1); similar to YSL1 (YELLOW STRIPE LIKE 1), oligopeptide transporter [Arabidopsis thaliana] (TA"
MSGI1_80730	NODE_18643_length_161_cov_7.459627	7.9	14.3	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_39844	NODE_18645_length_296_cov_9.043919	0.2	0.7	11.4	22.9	0	0	-5.8	-5	protein.degradation.ubiquitin.E3.DCX	DDB1A (UV-damaged DNA-binding protein 1A); DNA binding Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chro
MSGI1_39844	NODE_18645_length_296_cov_9.043919	0.2	0.7	11.4	22.9	0	0	-5.8	-5	stress.abiotic.light	DDB1A (UV-damaged DNA-binding protein 1A); DNA binding Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chro
MSGI1_56698	NODE_18646_length_220_cov_13.045455	17.1	7.7	0	0	0	0	5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_56165	NODE_18665_length_222_cov_39.373875	239.1	64.4	104.1	35.8	-1.9	-1.5	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_31509	NODE_18667_length_355_cov_11.633802	1.1	4	30.2	3.7	0	-3	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_63458	NODE_1867_length_199_cov_22.914574	58.3	40.7	21.5	23.9	0	0	1.4	0	glycolysis.pyrophosphate-fructose-6-P phosphotransferase	"pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related  similar to pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phospho"
MSGI1_49052	NODE_18681_length_250_cov_64.627998	77	2.1	8.9	1.8	-5.2	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_64895	NODE_1869_length_195_cov_6.164103	31.7	13.6	6.4	9.6	0	0	2.3	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase, putative  similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to LOX1 (Lipoxygenase 1), lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G55020.1); similar to lipoxygenase, putati"
MSGI1_112655	NODE_18702_length_108_cov_50.027779	70	62.4	59.7	117.7	0	1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_11061	NODE_1871_length_721_cov_50.392509	4.4	34.8	0	0	3	0	0	6.1	not assigned.unknown	not assigned.unknown
MSGI1_114684	NODE_18733_length_91_cov_44.571430	10.5	16	46.2	48.3	0	0	-2.1	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_25616	NODE_18734_length_419_cov_11.298329	3.7	2.3	29.3	13.5	0	0	-3	0	cell wall	"strictosidine synthase family protein  similar to YLS2 (yellow-leaf-specific gene 2), strictosidine synthase [Arabidopsis thaliana] (TAIR:AT3G51430.1); similar to mucin-like protein [Oryza sativa] (GB:AAG13594.1); contains InterPro domain Strictosidine s"
MSGI1_25616	NODE_18734_length_419_cov_11.298329	3.7	2.3	29.3	13.5	0	0	-3	0	secondary metabolism.N misc.alkaloid-like	"strictosidine synthase family protein  similar to YLS2 (yellow-leaf-specific gene 2), strictosidine synthase [Arabidopsis thaliana] (TAIR:AT3G51430.1); similar to mucin-like protein [Oryza sativa] (GB:AAG13594.1); contains InterPro domain Strictosidine s"
MSGI1_56697	NODE_18741_length_220_cov_10.322727	4	11.4	22.6	22.5	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_19971	NODE_18755_length_505_cov_10.782178	0	0	17.4	30.1	0	0	-5.1	-5.9	not assigned.unknown	not assigned.unknown
MSGI1_87631	NODE_1876_length_150_cov_40.900002	1.1	4	69.3	1.7	0	-5.3	-6	0	secondary metabolism.unspecified	carbonic anhydrase family protein / carbonate dehydratase family protein  similar to carbonate dehydratase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G58180.3); similar to Os09g0464000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063409.1);
MSGI1_87631	NODE_1876_length_150_cov_40.900002	1.1	4	69.3	1.7	0	-5.3	-6	0	TCA / org. transformation.carbonic anhydrases	carbonic anhydrase family protein / carbonate dehydratase family protein  similar to carbonate dehydratase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G58180.3); similar to Os09g0464000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063409.1);
MSGI1_109863	NODE_18766_length_123_cov_6.853659	1.7	3.4	15.6	2.2	0	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_72013	NODE_18775_length_178_cov_6.915730	0.5	0.2	7.7	15.1	0	0	0	-6.2	redox.thioredoxin	"ATHM3 (Arabidopsis thioredoxin M-type 3); thiol-disulfide exchange intermediate chloroplast protein similar to prokaryotic thioredoxin. Identical to Thioredoxin M-type 3, chloroplast precursor (TRX-M3) [Arabidopsis Thaliana] (GB:Q9SEU7;GB:Q42072;GB:Q9SKS"
MSGI1_9729	NODE_18792_length_773_cov_34.222511	4.3	12.5	60.9	19.5	0	-1.6	-3.8	0	protein.degradation.ubiquitin.E3.RING	RMA1 (Ring finger protein with Membrane Anchor 1); protein binding / ubiquitin-protein ligase/ zinc ion binding RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory path
MSGI1_107868	NODE_18798_length_125_cov_7.480000	0	0	14.6	14.8	0	0	-4.9	-4.9	protein.degradation.ubiquitin	ubiquitin fusion degradation UFD1 family protein  similar to ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana] (TAIR:AT4G38930.2); similar to ubiquitin fusion-degradation protein-like [Solanum tuberosum] (GB:ABB29959.1); contains Int
MSGI1_92550	NODE_18813_length_143_cov_9.363636	3.2	2.6	19.3	3.4	0	-2.5	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_85004	NODE_18821_length_154_cov_5.240260	0.1	0.1	12.7	5.8	0	0	-7	0	not assigned.unknown	not assigned.unknown
MSGI1_122180	NODE_18845_length_61_cov_43.327869	40.8	44	118.5	30.9	0	-1.9	-1.5	0	cell wall	GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP5) Identical to Germin-like protein subfamily 2 member 1 precursor (GLP4) [Arabidopsis Thaliana] (GB:P94014;GB:O80538;GB:P94097); similar
MSGI1_122180	NODE_18845_length_61_cov_43.327869	40.8	44	118.5	30.9	0	-1.9	-1.5	0	stress.abiotic.unspecified	GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP5) Identical to Germin-like protein subfamily 2 member 1 precursor (GLP4) [Arabidopsis Thaliana] (GB:P94014;GB:O80538;GB:P94097); similar
MSGI1_73422	NODE_18858_length_175_cov_15.245714	28.8	21.6	5.6	16.8	0	0	2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_98783	NODE_18866_length_135_cov_20.933332	26.6	21.2	20.1	51.7	0	1.4	0	-1.3	RNA.transcription	RBP36A (RNA polymerase II 36 kDa polypeptide A); DNA binding / DNA-directed RNA polymerase RNA polymerase subunit Identical to DNA-directed RNA polymerase II 36 kDa polypeptide A (EC 2.7.7.6) (RNA polymerase II subunit 3) (RPB36A) [Arabidopsis Thaliana]
MSGI1_59701	NODE_18879_length_210_cov_14.419047	2.2	2.4	28.3	13.1	0	0	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_81294	NODE_18881_length_160_cov_6.718750	1	0.7	14.5	0.7	0	-4.4	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_70672	NODE_18886_length_181_cov_57.430939	9.7	53.4	5	3.3	2.5	0	0	4	cell wall.cell wall proteins.LRR	leucine-rich repeat family protein  similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT2G15880.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT
MSGI1_62039	NODE_18891_length_203_cov_10.783251	15.3	31.5	3.5	3.6	0	0	0	3.1	not assigned.unknown	not assigned.unknown
MSGI1_115767	NODE_18893_length_81_cov_38.716049	15.2	16.4	2.7	2.5	0	0	0	2.7	not assigned.unknown	not assigned.unknown
MSGI1_13967	NODE_18907_length_631_cov_49.488113	51.7	1.6	6.8	0.9	-5	0	2.9	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_13967	NODE_18907_length_631_cov_49.488113	51.7	1.6	6.8	0.9	-5	0	2.9	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G18970.1); similar to GDSL-lipase protein [Capsicum annuum] (GB:AAX20033.1); contains InterPro domain Lipolytic enzyme, G-D-"
MSGI1_15904	NODE_18910_length_580_cov_14.625862	2.9	13.9	0	0.1	0	0	0	7.1	not assigned.unknown	not assigned.unknown
MSGI1_53997	NODE_18917_length_230_cov_57.643478	52.7	35.9	5.7	9.3	0	0	3.2	1.9	not assigned.unknown	not assigned.unknown
MSGI1_43304	NODE_18925_length_277_cov_7.104693	0.9	2.3	18.8	1	0	-4.2	-4.4	0	cell wall	"CES101 (CALLUS EXPRESSION OF RBCS 101); carbohydrate binding / kinase  similar to B120, protein kinase/ sugar binding [Arabidopsis thaliana] (TAIR:AT4G21390.1); similar to SFR1 [Brassica oleracea var. acephala] (GB:CAA74661.1); contains InterPro domain S"
MSGI1_43304	NODE_18925_length_277_cov_7.104693	0.9	2.3	18.8	1	0	-4.2	-4.4	0	cell wall	"CES101 (CALLUS EXPRESSION OF RBCS 101); carbohydrate binding / kinase  similar to B120, protein kinase/ sugar binding [Arabidopsis thaliana] (TAIR:AT4G21390.1); similar to SFR1 [Brassica oleracea var. acephala] (GB:CAA74661.1); contains InterPro domain S"
MSGI1_43304	NODE_18925_length_277_cov_7.104693	0.9	2.3	18.8	1	0	-4.2	-4.4	0	protein.postranslational modification	"CES101 (CALLUS EXPRESSION OF RBCS 101); carbohydrate binding / kinase  similar to B120, protein kinase/ sugar binding [Arabidopsis thaliana] (TAIR:AT4G21390.1); similar to SFR1 [Brassica oleracea var. acephala] (GB:CAA74661.1); contains InterPro domain S"
MSGI1_43304	NODE_18925_length_277_cov_7.104693	0.9	2.3	18.8	1	0	-4.2	-4.4	0	misc.myrosinases-lectin-jacalin	"CES101 (CALLUS EXPRESSION OF RBCS 101); carbohydrate binding / kinase  similar to B120, protein kinase/ sugar binding [Arabidopsis thaliana] (TAIR:AT4G21390.1); similar to SFR1 [Brassica oleracea var. acephala] (GB:CAA74661.1); contains InterPro domain S"
MSGI1_29803	NODE_18927_length_371_cov_38.725067	49.8	66.7	44.4	134.3	0	1.6	0	-1	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_29803	NODE_18927_length_371_cov_38.725067	49.8	66.7	44.4	134.3	0	1.6	0	-1	transport.Major Intrinsic Proteins.NIP	NIP6;1 (NOD26-like intrinsic protein 6;1); water channel Similar to gb:D17443 major intrinsic protein from Oryza sativa Identical to Aquaporin NIP6.1 (NOD26-like intrinsic protein 6.1) (NIP6.1) [Arabidopsis Thaliana] (GB:Q9SAI4;GB:Q5PP68); similar to NIP
MSGI1_29803	NODE_18927_length_371_cov_38.725067	49.8	66.7	44.4	134.3	0	1.6	0	-1	cell wall	NIP6;1 (NOD26-like intrinsic protein 6;1); water channel Similar to gb:D17443 major intrinsic protein from Oryza sativa Identical to Aquaporin NIP6.1 (NOD26-like intrinsic protein 6.1) (NIP6.1) [Arabidopsis Thaliana] (GB:Q9SAI4;GB:Q5PP68); similar to NIP
MSGI1_122177	NODE_1893_length_61_cov_191.114761	126.8	324	0	0	1.4	0	8	9.3	stress.abiotic.heat	ATJ3 (Arabidopsis thaliana DnaJ homologue 3) homologous to the co-chaperon DNAJ protein from E coli Identical to Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) (ATJ3) [Arabidopsis Thaliana] (GB:Q94AW8;GB:O22663;GB:Q42530); similar to ATJ2 (Arabidopsis thaliana
MSGI1_28519	NODE_18934_length_385_cov_7.802598	5.5	12.2	44.4	17.4	0	-1.4	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_14459	NODE_18935_length_617_cov_62.329010	40.4	23.3	15.3	13.6	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_19447	NODE_1894_length_516_cov_12.779070	0.7	1.1	33.1	1.9	0	-4.1	-5.6	0	hormone metabolism.jasmonate.synthesis-degradation.12-Oxo-PDA-reductase	"12-oxophytodienoate reductase, putative  Identical to Putative 12-oxophytodienoate reductase-like protein 1 (EC 1.3.1.-) [Arabidopsis Thaliana] (GB:Q8GYA3;GB:O80523); similar to OPR1 (12-oxophytodienoate reductase 1), 12-oxophytodienoate reductase [Arabi"
MSGI1_122176	NODE_1894_length_61_cov_22.737705	15.1	6.3	0.4	0	0	0	5.2	0	transport.porins	"porin, putative  similar to porin, putative [Arabidopsis thaliana] (TAIR:AT3G49920.1); similar to porin-like protein [Brassica napus] (GB:AAW22622.1); contains InterPro domain Porin, eukaryotic type; (InterPro:IPR001925)"
MSGI1_76840	NODE_18958_length_168_cov_17.672619	2.4	8.8	27.6	2.6	0	-3.4	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_83115	NODE_18959_length_157_cov_85.222931	89.7	120.1	1.1	0.5	0	0	6.3	7.9	not assigned.unknown	not assigned.unknown
MSGI1_33839	NODE_18965_length_336_cov_12.184524	11	17.1	0.2	0.6	0	0	5.8	4.8	protein.degradation	"peptidase M20/M25/M40 family protein  similar to DIP-1 [Citrullus lanatus] (GB:BAA95409.1); similar to acetylornithine deacetylase, putative [Brassica oleracea] (GB:ABD65618.1); similar to acetylornithine deacetylase, putative [Brassica oleracea] (GB:ABD"
MSGI1_85610	NODE_18966_length_153_cov_23.300653	25.2	0.7	2	1.2	-5.2	0	3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_32558	NODE_1897_length_346_cov_45.040462	51.5	17.4	29.3	29	-1.6	0	0	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"tropinone reductase, putative / tropine dehydrogenase, putative  similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29290.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japo"
MSGI1_122172	NODE_18977_length_61_cov_34.950821	21.6	26.4	0.4	0	0	0	5.8	5.7	not assigned.unknown	not assigned.unknown
MSGI1_9540	NODE_18978_length_780_cov_11.276923	10.6	11.6	0.5	0.2	0	0	0	5.9	not assigned.unknown	not assigned.unknown
MSGI1_37333	NODE_18980_length_311_cov_6.051447	5.7	17.1	3.9	2.4	0	0	0	2.8	not assigned.unknown	not assigned.unknown
MSGI1_112288	NODE_18982_length_111_cov_5.972973	5.6	10.1	17.3	2.3	0	-2.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_122171	NODE_18983_length_61_cov_93.114754	46.8	52.9	12	39.5	0	1.7	2	0	cell wall.precursor synthesis.NDP sugar pyrophosphorylase.GDP mannose	"CYT1 (CYTOKINESIS DEFECTIVE 1); nucleotidyltransferase Encodes a GDP-mannose pyrophosphorylase/ mannose-1-pyrophosphatase. This enzyme provides GDP-mannose, which is used for cell wall carbohydrate biosynthesis and protein glycosylation as well as for as"
MSGI1_86982	NODE_18984_length_151_cov_32.953644	25.4	34.1	2.3	4.3	0	0	3.5	3	amino acid metabolism.synthesis.aspartate family.methionine	"ATCIMS (COBALAMIN-INDEPENDENT METHIONINE SYNTHASE); 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase Encodes a cytosolic cobalamin-independent methionine synthase, involved in methionine regeneration via the act"
MSGI1_24226	NODE_18990_length_437_cov_70.681923	46.7	9.6	40.3	27.1	-2.3	0	0	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX2 (LIPOXYGENASE 2) Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection. Identical to Lipoxygenase, chloroplast precur"
MSGI1_112788	NODE_18994_length_107_cov_138.457947	71.3	49.3	34	44.7	0	0	1.1	0	protein.degradation.ubiquitin.proteasom	PBC1 (20S proteasome beta subunit C1); peptidase 20S proteasome beta subunit PBC1 truncated protein (PBC1) Identical to Proteasome subunit beta type 3-A (EC 3.4.25.1) (20S proteasome beta subunit C-1) (Proteasome component T) (PBC1) [Arabidopsis Thaliana
MSGI1_22794	NODE_1900_length_459_cov_67.102394	65.7	17	8.9	3.8	-2	0	2.9	0	cell wall	"glycosyl hydrolase family 17 protein  similar to hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT4G26830.1); similar to elicitor inducible beta-1,3-glucanase NtEIG-E76 [Nicotiana tabacum] (GB:BAB17320.1); similar to beta-1,3-gl"
MSGI1_122170	NODE_19005_length_61_cov_49.950821	34.1	34	3.2	10.7	0	0	3.4	1.7	not assigned.unknown	not assigned.unknown
MSGI1_60978	NODE_19007_length_206_cov_43.383495	26.8	17.5	0	0	0	0	5.7	5.1	not assigned.unknown	not assigned.unknown
MSGI1_101404	NODE_19015_length_132_cov_4.060606	9.5	12.9	28.2	7.5	0	-1.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_28954	NODE_19019_length_380_cov_23.410526	8.5	12.8	35	14.7	0	0	-2	0	cell wall	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein  similar to NHL12 (NDR1/HIN1-like 12) [Arabidopsis thaliana] (TAIR:AT2G35960.1); similar to Harpin-induced 1 [Medicago truncatula] (GB:ABD32713.1); contains InterPro do
MSGI1_6858	NODE_19019_length_918_cov_23.312635	19.2	14.3	0	0	0	0	5.3	4.8	cell wall	leucine-rich repeat family protein / protein kinase family protein  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G56145.1); similar to leucine-rich repeat family protein / protein kinase fa
MSGI1_6858	NODE_19019_length_918_cov_23.312635	19.2	14.3	0	0	0	0	5.3	4.8	signalling.receptor kinases.leucine rich repeat VIII-2	leucine-rich repeat family protein / protein kinase family protein  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G56145.1); similar to leucine-rich repeat family protein / protein kinase fa
MSGI1_66384	NODE_19030_length_191_cov_10.497382	5.5	5.5	11	24	0	0	0	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_46894	NODE_19033_length_260_cov_23.665384	9.6	29.7	58.7	7.2	0	-3	-2.6	2	protein.postranslational modification	"protein phosphatase 2C, putative / PP2C, putative  similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G30020.1); similar to protein phosphatase 2C [Medicago sativa] (GB:CAA72341.1); contains InterPro domain Prote"
MSGI1_86980	NODE_19035_length_151_cov_6.000000	0	0	13.5	16.6	0	0	-4.8	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_30119	NODE_19039_length_368_cov_44.562500	26.1	127.1	85.4	164.3	2.3	0.9	-1.7	0	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN1 (DARK INDUCIBLE 6) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumul"
MSGI1_122164	NODE_19040_length_61_cov_21.622952	4.7	36	66.6	82.8	2.9	0	-3.8	-1.2	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN1 (DARK INDUCIBLE 6) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumul"
MSGI1_117867	NODE_19046_length_64_cov_38.500000	23.5	7.4	3.1	6.4	0	0	2.9	0	minor CHO metabolism.others	"AtkdsA1 (Arabidopsis thaliana KDO-8-phosphate synthase A1); 3-deoxy-8-phosphooctulonate synthase Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall r"
MSGI1_39636	NODE_19047_length_297_cov_31.410774	39.2	2.6	10.4	1.8	-3.9	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_105917	NODE_19053_length_127_cov_118.559052	109.9	86.5	0.3	0	0	0	8.5	7.4	amino acid metabolism.synthesis.aspartate family.methionine	"ATCIMS (COBALAMIN-INDEPENDENT METHIONINE SYNTHASE); 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase Encodes a cytosolic cobalamin-independent methionine synthase, involved in methionine regeneration via the act"
MSGI1_60638	NODE_19065_length_207_cov_11.347826	11.5	15.6	0.5	1.5	0	0	4.5	3.4	signalling.receptor kinases.leucine rich repeat II	"leucine-rich repeat family protein / protein kinase family protein  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G23950.1); similar to NIK1 (NSP-INTERACTING KINASE 1), kinase [Arabidopsis t"
MSGI1_112965	NODE_19076_length_106_cov_318.764160	126.7	40.7	42.9	49.4	-1.6	0	1.6	0	cell.organisation	"ACT3 (ACTIN 3); structural constituent of cytoskeleton Member of the Actin gene family. Expressed in mature pollen. Identical to Actin-1/3 (ACT3) [Arabidopsis Thaliana] (GB:P10671;GB:P53493;GB:Q9M351); similar to ACT11 (ACTIN-11), structural constituent"
MSGI1_93280	NODE_19077_length_142_cov_34.823944	31	14.5	0	0.5	0	0	6	4.9	PS.calvin cyle.rubisco interacting	"CPN60A (chloroplast / 60 kDa chaperonin alpha subunit); ATP binding / protein binding / unfolded protein binding Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding.  Mutants display aberrant chloroplast and embryo development."
MSGI1_16828	NODE_1908_length_561_cov_24.274509	16.8	17.1	0.8	0.4	0	0	4.4	5.4	not assigned.unknown	not assigned.unknown
MSGI1_13058	NODE_19084_length_656_cov_82.425308	62.2	0.2	4.5	0.3	-8.3	0	3.8	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_13058	NODE_19084_length_656_cov_82.425308	62.2	0.2	4.5	0.3	-8.3	0	3.8	0	misc.GDSL-motif lipase	ATLTL1/LTL1 (LI-TOLERANT LIPASE 1); carboxylic ester hydrolase  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G33370.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipo
MSGI1_117088	NODE_19086_length_70_cov_31.771429	20.7	14.4	1.5	3.8	0	0	3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_98015	NODE_19088_length_136_cov_83.404411	45.3	78.2	26.9	57.8	0	1.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_29701	NODE_19097_length_372_cov_54.435482	69.1	49	26.2	48.6	0	0	1.4	0	cell.organisation	"VLN4 (ARABIDOPSIS THALIANA VILLIN 4); actin binding Arabidopsis thaliana VILLIN4 Identical to Villin-4 (VLN4) [Arabidopsis Thaliana] (GB:O65570;GB:Q9SZW9); similar to villin, putative [Arabidopsis thaliana] (TAIR:AT5G57320.1); similar to VLN3 (VILLIN 3),"
MSGI1_102227	NODE_19099_length_131_cov_9.732824	6.6	24.8	2.8	23	1.9	3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_122163	NODE_19108_length_61_cov_45.622952	11.2	6.7	0	0	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_47976	NODE_19126_length_255_cov_9.019608	5.5	4.6	23.9	28.5	0	0	-2.1	-2.6	not assigned.unknown	not assigned.unknown
MSGI1_110918	NODE_19132_length_122_cov_9.090164	4.1	2.3	12.2	21.1	0	0	0	-3.2	not assigned.unknown	not assigned.unknown
MSGI1_115851	NODE_19134_length_80_cov_69.312500	108.6	77.9	63.2	122	0	0.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_100475	NODE_19137_length_133_cov_12.225564	6.6	22.5	13.5	3.6	0	0	0	2.6	RNA.processing.ribonucleases	"CCR4-NOT transcription complex protein, putative  similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT3G44260.1); similar to CCR4 associated factor 1-related protein [Capsicum annuum] (GB:ABG66307.1); contains Inter"
MSGI1_100474	NODE_19143_length_133_cov_3.368421	2.6	1.8	21	10.1	0	0	-3	0	secondary metabolism.N misc.alkaloid-like	YLS2 (yellow-leaf-specific gene 2); strictosidine synthase strictosidine synthase-like protein similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G51450.1); similar to strictosidine synthase family protein [Arabidopsis thalia
MSGI1_22117	NODE_19150_length_468_cov_23.566238	20.3	9.1	3.2	8.8	0	0	2.7	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"glycosyl hydrolase family 3 protein  similar to BXL1 (BETA-XYLOSIDASE 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G49360.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G10560.1); sim"
MSGI1_113504	NODE_19155_length_102_cov_90.941177	25.3	20.6	45.5	8.3	0	-2.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_85002	NODE_19165_length_154_cov_22.279221	22.7	16.6	0	0	0	0	5.5	5.1	RNA.regulation of transcription.Psudo ARR transcription factor family	APRR2 (PSEUDO-RESPONSE REGULATOR 2); transcription factor Encodes pseudo-response regulator 2 (APRR2). Identical to Two-component response regulator-like APRR2 (Pseudo-response regulator 2) (TOC2 protein) (APRR2) [Arabidopsis Thaliana] (GB:Q6LA43;GB:O497
MSGI1_19446	NODE_19168_length_516_cov_23.951550	7.4	2.4	54.2	1.5	0	-5.2	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_60977	NODE_19172_length_206_cov_11.116505	6.6	7	30.5	13.5	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_91100	NODE_19180_length_145_cov_27.620689	26.4	19.2	2.4	3.2	0	0	3.5	2.6	cell wall	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein  similar to harpin-induced family protein / HIN1 family protein / harpin-responsive family protein [Arabidopsis thaliana] (TAIR:AT5G22200.1); similar to Os12g0159600 [O
MSGI1_30549	NODE_19189_length_364_cov_32.736263	44.1	2.5	4.2	6.6	-4.1	0	3.4	0	PS.lightreaction.photosystem II.LHC-II	LHCB2:4 (Photosystem II light harvesting complex gene 2.3); chlorophyll binding Encodes Lhcb2.4.  Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynt
MSGI1_37622	NODE_1919_length_309_cov_15.307444	56	33.8	20.8	26.2	0	0	1.4	0	RNA.regulation of transcription.GRAS transcription factor family	GAI (GA INSENSITIVE); transcription factor Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell pro
MSGI1_37622	NODE_1919_length_309_cov_15.307444	56	33.8	20.8	26.2	0	0	1.4	0	hormone metabolism.gibberelin.induced-regulated-responsive-activated	GAI (GA INSENSITIVE); transcription factor Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell pro
MSGI1_53197	NODE_19195_length_233_cov_14.467812	2.4	2.1	18	5.6	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_111829	NODE_19196_length_115_cov_36.339130	31.5	24.2	3.3	6.3	0	0	3.3	1.9	not assigned.unknown	not assigned.unknown
MSGI1_97154	NODE_19198_length_137_cov_46.364964	46.9	49.6	16.4	37.5	0	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_47307	NODE_19210_length_258_cov_63.875969	34.4	97.8	73.5	74.3	1.5	0	-1.1	0	protein.degradation.ubiquitin.E2	UBC13 (ubiquitin-conjugating enzyme 13); ubiquitin-protein ligase  Identical to Ubiquitin-conjugating enzyme E2 13 (EC 6.3.2.19) (Ubiquitin-protein ligase 13) (Ubiquitin carrier protein 13) (UBC13) [Arabidopsis Thaliana] (GB:Q42541); similar to UBC14 (ub
MSGI1_116727	NODE_19218_length_73_cov_6.657534	5.1	2.3	31.3	26.6	0	0	-2.6	-3.5	not assigned.unknown	not assigned.unknown
MSGI1_86978	NODE_19229_length_151_cov_27.258278	1.8	1	48.8	1.2	0	-5.3	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_44706	NODE_19230_length_270_cov_12.300000	13.4	5.7	16.8	2.3	0	-2.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_122159	NODE_19233_length_61_cov_43.901638	11	20.9	46.3	45.7	0	0	-2.1	0	transport.p- and v-ATPases	"AHA5 (ARABIDOPSIS H(+)-ATPASE 5); ATPase  Identical to ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump 5) (AHA5) [Arabidopsis Thaliana] (GB:Q9SJB3); similar to AHA1 (PLASMA MEMBRANE PROTON ATPASE), ATPase [Arabidopsis thaliana] (TAIR:AT2G18960.1"
MSGI1_69348	NODE_19245_length_184_cov_76.331520	43.4	30.1	17.8	19.6	0	0	1.3	0	cell wall.precursor synthesis.GAE	"GAE6 (UDP-D-GLUCURONATE 4-EPIMERASE 6); catalytic UDP-D-glucuronate 4-epimerase similar to GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3), catalytic [Arabidopsis thaliana] (TAIR:AT4G00110.1); similar to GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2), catalytic [Arabidop"
MSGI1_23197	NODE_19247_length_454_cov_10.715859	0.1	0	14.9	30.9	0	0	-7.2	-5.9	not assigned.unknown	not assigned.unknown
MSGI1_27848	NODE_1925_length_392_cov_120.005104	85.6	37.5	33.8	19	-1.2	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_94859	NODE_19256_length_140_cov_20.735714	24.4	60.6	74	18	1.3	-2	-1.6	1.8	stress.abiotic.heat	"heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)  Identical to Heat shock cognate 70 kDa protein 3 (Hsc70.3) (HSC70-3) [Arabidopsis Thaliana] (GB:O65719;GB:Q42345); similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR"
MSGI1_85606	NODE_19270_length_153_cov_12.045752	0.3	0.6	26.8	2.1	0	-3.7	-6.5	0	not assigned.unknown	not assigned.unknown
MSGI1_73890	NODE_19301_length_174_cov_5.580460	2.7	4.9	36.2	13.5	0	0	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_31743	NODE_19307_length_353_cov_10.028329	0.1	0.3	24.7	2.3	0	-3.4	-7.9	0	not assigned.unknown	not assigned.unknown
MSGI1_79530	NODE_19310_length_163_cov_72.190186	74.4	149.5	25.6	46.2	1	0	1.5	1.7	cell wall.modification	"XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9); hydrolase, acting on glycosyl bonds encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and"
MSGI1_70669	NODE_19311_length_181_cov_10.668509	7.1	10.2	27.4	24.6	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_98775	NODE_19314_length_135_cov_17.451853	0	0	31	1.3	0	-4.6	-6	0	not assigned.unknown	not assigned.unknown
MSGI1_36438	NODE_19314_length_317_cov_12.283912	5.2	22.2	7.6	18.4	2.1	0	0	0	"misc.oxidases - copper, flavone etc."	"SKS1 (SKU5 SIMILAR 1); copper ion binding Encodes GPI-anchored SKU5-like protein. Identical to Monocopper oxidase-like protein SKS1 precursor (SKS1) [Arabidopsis Thaliana] (GB:Q8VXX5;GB:Q9SB39); similar to SKU5 (skewed 5), copper ion binding [Arabidopsis"
MSGI1_60975	NODE_19317_length_206_cov_25.354368	17.2	0.1	29.1	19.9	-7.4	0	0	-7.6	not assigned.unknown	not assigned.unknown
MSGI1_71529	NODE_19324_length_179_cov_19.301676	5.6	22.8	14	6.7	2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_27586	NODE_19329_length_395_cov_42.562027	26.2	31.1	127.3	32.9	0	-2	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_114567	NODE_1933_length_92_cov_45.652172	1.8	1.6	88.6	0.7	0	-7	-5.6	0	not assigned.unknown	not assigned.unknown
MSGI1_89665	NODE_19332_length_147_cov_6.727891	5.4	6.6	29.2	8.7	0	-1.7	-2.4	0	signalling.calcium	"CPK20 (calcium-dependent protein kinase 20); calcium- and calmodulin-dependent protein kinase/ kinase member of Calcium Dependent Protein Kinase similar to CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5), calcium- and calmodulin-dependent protein kinase/ kinas"
MSGI1_9487	NODE_19336_length_782_cov_28.132992	38.3	44.2	17.9	41.8	0	1.2	0	0	protein.degradation.ubiquitin.E3.SCF.FBOX	"F-box family protein (FBX14)  similar to AFB5 (AUXIN F-BOX PROTEIN 5), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G49980.1); similar to Os02g0759700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048183.1); similar to F-box containing p"
MSGI1_10831	NODE_19339_length_730_cov_28.483562	25	10.6	5.1	6.4	0	0	2.3	0	RNA.regulation of transcription.Nucleosome/chromatin assembly factor group	HMGB6 (High mobility group B 6); transcription factor Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins similar to high mobility group (HMG1/2) family protein [Arabidopsis thaliana] (TAIR:AT5G23405.1); similar to HMG-pro
MSGI1_65255	NODE_1934_length_194_cov_104.422684	0.5	0.8	232.6	1	0	-7.9	-8.9	0	not assigned.unknown	not assigned.unknown
MSGI1_111131	NODE_19348_length_121_cov_14.041323	11	12.1	0	0	0	0	4.5	4.6	not assigned.unknown	not assigned.unknown
MSGI1_90379	NODE_19350_length_146_cov_13.958904	12.2	5.1	0.9	1	0	0	3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_89664	NODE_19360_length_147_cov_6.108843	0	0.2	13.1	14	0	0	-4.7	-6.1	not assigned.unknown	not assigned.unknown
MSGI1_68479	NODE_19364_length_186_cov_7.198925	5	12	23.4	6.7	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_64893	NODE_19371_length_195_cov_5.856410	2.7	3.8	1.1	13.9	0	3.7	0	0	"misc.gluco-, galacto- and mannosidases"	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_64893	NODE_19371_length_195_cov_5.856410	2.7	3.8	1.1	13.9	0	3.7	0	0	major CHO metabolism.degradation.starch.starch cleavage	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_57555	NODE_19371_length_217_cov_5.847926	6.8	19	1.2	1.3	0	0	0	3.9	not assigned.unknown	not assigned.unknown
MSGI1_122151	NODE_19377_length_61_cov_28.819672	9	14.4	9.2	40.8	0	2.1	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_64178	NODE_19380_length_197_cov_32.832489	1	1.9	101.7	3.3	0	-4.9	-6.7	0	not assigned.unknown	not assigned.unknown
MSGI1_93277	NODE_19387_length_142_cov_16.253521	10.3	14	23.2	4.7	0	-2.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_30118	NODE_1939_length_368_cov_103.741844	142.5	65.2	351.3	48.7	-1.1	-2.9	-1.3	0	stress.abiotic.drought/salt	RCI2B (RARE-COLD-INDUCIBLE 2B)  Identical to Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B) (RCI2B) [Arabidopsis Thaliana] (GB:Q9ZNS6;GB:Q9M9K9); similar to RCI2A (RARE-COLD-INDUCIBLE 2A) [Arabidopsis thaliana] (TAIR:AT3G05
MSGI1_30118	NODE_1939_length_368_cov_103.741844	142.5	65.2	351.3	48.7	-1.1	-2.9	-1.3	0	stress.abiotic.cold	RCI2B (RARE-COLD-INDUCIBLE 2B)  Identical to Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B) (RCI2B) [Arabidopsis Thaliana] (GB:Q9ZNS6;GB:Q9M9K9); similar to RCI2A (RARE-COLD-INDUCIBLE 2A) [Arabidopsis thaliana] (TAIR:AT3G05
MSGI1_118003	NODE_19395_length_63_cov_23.492064	13.4	13.3	33.4	7.7	0	-2.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_36723	NODE_19396_length_315_cov_22.428572	21.6	33.6	7.1	4.3	0	0	0	3	not assigned.unknown	not assigned.unknown
MSGI1_72012	NODE_19401_length_178_cov_9.348314	21.7	0.2	10	0.6	-6.8	0	0	0	TCA / org. transformation.other organic acid transformaitons.malic	"ATNADP-ME3 (NADP-MALIC ENZYME 3); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor The malic enzyme (EC 1.1.1.40) encoded by the ATNADP-ME3 is presumably cytosolic"
MSGI1_81291	NODE_19407_length_160_cov_4.843750	2.5	16.2	2.4	5	2.7	0	0	0	hormone metabolism.abscisic acid.synthesis-degradation	"CCD8 (CAROTENOID CLEAVAGE DIOXYGENASE 8) Encodes a protein with similarity to carotenoid cleaving deoxygenases, the enzymes that cleave beta-carotene. Involved in the production of a graft transmissable signal to suppress axillary branching. Protein is l"
MSGI1_70668	NODE_19430_length_181_cov_16.861879	0.3	0.7	36	29.4	0	0	-6.9	-5.4	RNA.regulation of transcription.SNF7	SNF7 family protein  similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT5G04850.1); similar to putative CGI-34 protein [Oryza sativa (japonica cultivar-group)] (GB:BAB16321.1); similar to Os05g0102900 [Oryza sativa (japonica cultivar-group)] (G
MSGI1_21780	NODE_19430_length_473_cov_11.446089	16.7	2.2	2.2	2.6	-2.9	0	2.9	0	cell wall	"aspartyl protease family protein  similar to chloroplast nucleoid DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G10770.1); similar to Os09g0423500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063212.1); similar to 41 kD chloroplast"
MSGI1_21780	NODE_19430_length_473_cov_11.446089	16.7	2.2	2.2	2.6	-2.9	0	2.9	0	protein.degradation.aspartate protease	"aspartyl protease family protein  similar to chloroplast nucleoid DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G10770.1); similar to Os09g0423500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063212.1); similar to 41 kD chloroplast"
MSGI1_60634	NODE_1945_length_207_cov_22.724638	16.5	13.3	1.3	1.7	0	0	3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_14545	NODE_19452_length_615_cov_13.304065	18.3	34.2	56.6	30.4	0	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_111656	NODE_19454_length_116_cov_41.224136	32.3	18.9	8	8.5	0	0	2	0	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	catalytic/ coenzyme binding  similar to putative NADH:ubiquinone oxidoreductase 39 kDa subunit precursor [Chlamydomonas reinhardtii] (GB:AAQ55458.1); similar to Os02g0816800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048516.1); contains InterPro d
MSGI1_111655	NODE_19455_length_116_cov_22.775862	0.1	0	19.3	16.2	0	0	-7.6	-5	stress.abiotic.heat	"HSP91 (Heat shock protein 91) encodes high molecular weight heat shock protein 70 not a HSP90 homolog, mRNA is constitutively expressed but transiently induced after heat shock similar to heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT1G1166"
MSGI1_25445	NODE_19463_length_421_cov_14.156770	0	0	35.5	0	0	-6.1	-6.1	0	not assigned.unknown	not assigned.unknown
MSGI1_42013	NODE_19464_length_284_cov_14.161972	15.9	4.5	0	0	0	0	5	0	redox.peroxiredoxin	"2-cys peroxiredoxin, chloroplast (BAS1)  Identical to 2-cys peroxiredoxin BAS1, chloroplast precursor (EC 1.11.1.15) (BAS1) [Arabidopsis Thaliana] (GB:Q96291;GB:P92938;GB:Q9S7Y0); similar to 2-cys peroxiredoxin, chloroplast, putative [Arabidopsis thalian"
MSGI1_52708	NODE_19471_length_235_cov_15.795745	10.8	65.2	13.8	1.4	2.6	-3.3	0	5.5	not assigned.unknown	not assigned.unknown
MSGI1_33570	NODE_19477_length_338_cov_10.136095	3.6	1.9	25.4	3.6	0	-2.8	-2.8	0	stress.biotic.respiratory burst	"ATRBOH F (RESPIRATORY BURST OXIDASE PROTEIN F); NAD(P)H oxidase Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. similar to respiratory burst oxidase, putativ"
MSGI1_33570	NODE_19477_length_338_cov_10.136095	3.6	1.9	25.4	3.6	0	-2.8	-2.8	0	stress.biotic.respiratory burst	"ATRBOH F (RESPIRATORY BURST OXIDASE PROTEIN F); NAD(P)H oxidase Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. similar to respiratory burst oxidase, putativ"
MSGI1_122147	NODE_1948_length_61_cov_87.901642	43.1	2.2	0.4	0	-4.3	0	6.8	0	cell wall	"peroxidase, putative  Identical to Peroxidase 49 precursor (EC 1.11.1.7) (Atperox P49) (ATP31) (PER49) [Arabidopsis Thaliana] (GB:O23237); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT2G18150.1); similar to peroxidase [Dimocarpus longan"
MSGI1_122147	NODE_1948_length_61_cov_87.901642	43.1	2.2	0.4	0	-4.3	0	6.8	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 49 precursor (EC 1.11.1.7) (Atperox P49) (ATP31) (PER49) [Arabidopsis Thaliana] (GB:O23237); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT2G18150.1); similar to peroxidase [Dimocarpus longan"
MSGI1_98774	NODE_19481_length_135_cov_3.822222	0.2	0.6	13.9	8.7	0	0	-6.1	0	not assigned.unknown	not assigned.unknown
MSGI1_117703	NODE_19481_length_65_cov_59.046154	26.9	37.8	21.2	4.8	0	0	0	3	not assigned.unknown	not assigned.unknown
MSGI1_91811	NODE_19488_length_144_cov_16.437500	33.2	15.5	7.8	25.7	0	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_33429	NODE_19492_length_339_cov_16.758112	2.7	4	20.7	16	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_36437	NODE_19498_length_317_cov_14.895899	25.9	2	0.8	0.1	-3.7	0	5	0	not assigned.unknown	not assigned.unknown
MSGI1_18522	NODE_1950_length_530_cov_25.850943	1.9	3.1	31.2	23	0	0	-4	-2.9	not assigned.unknown	not assigned.unknown
MSGI1_11516	NODE_19505_length_706_cov_12.892351	17.7	14.7	0.1	0	0	0	7.5	4.9	not assigned.unknown	not assigned.unknown
MSGI1_86976	NODE_19516_length_151_cov_6.503311	2.6	3.9	17.4	9.9	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_31294	NODE_19518_length_357_cov_13.747899	22.7	1.3	1.4	0	-4.1	0	4	0	secondary metabolism.phenylpropanoids	transferase family protein encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091) similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G48930.1); similar t
MSGI1_100471	NODE_1952_length_133_cov_28.263159	26.2	50.7	27.8	71.3	0	1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_64551	NODE_19521_length_196_cov_10.377551	9.1	3.3	196.1	1.2	0	-7.4	-4.4	0	stress.biotic	"protease inhibitor, putative  similar to serine protease inhibitor, potato inhibitor I-type family protein [Arabidopsis thaliana] (TAIR:AT2G38900.1); similar to type I proteinase inhibitor-like protein [Citrus x paradisi] (GB:AAN76363.1); contains InterP"
MSGI1_21162	NODE_19521_length_482_cov_9.699170	0.7	0.1	18.9	7.4	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_110914	NODE_19522_length_122_cov_15.901639	3.7	12.7	4.2	0.3	0	0	0	5.4	not assigned.unknown	not assigned.unknown
MSGI1_39634	NODE_19534_length_297_cov_50.323231	40.4	26.6	11.7	15.4	0	0	1.8	0	tetrapyrrole synthesis.glu-tRNA reductase	"HEMA2; glutamyl-tRNA reductase Encodes glutamyl-tRNA reductase. Identical to Glutamyl-tRNA reductase 2, chloroplast precursor (EC 1.2.1.70) (GluTR) (HEMA2) [Arabidopsis Thaliana] (GB:P49294;GB:O04950); similar to HEMA3, glutamyl-tRNA reductase [Arabidops"
MSGI1_111215	NODE_19536_length_120_cov_14.791667	27.9	5	7.3	4.5	-2.5	0	1.9	0	cell wall	GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G26430.1); similar to Os07g0586200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060129.1); similar to hypothetical pro
MSGI1_111215	NODE_19536_length_120_cov_14.791667	27.9	5	7.3	4.5	-2.5	0	1.9	0	misc.GDSL-motif lipase	GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G26430.1); similar to Os07g0586200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060129.1); similar to hypothetical pro
MSGI1_115385	NODE_19541_length_84_cov_48.940475	23.7	13.2	1.7	1	0	0	3.8	3.7	not assigned.unknown	not assigned.unknown
MSGI1_80127	NODE_19542_length_162_cov_19.135803	22.5	17.3	0	0	0	0	5.5	5.1	not assigned.unknown	not assigned.unknown
MSGI1_98010	NODE_19549_length_136_cov_5.757353	0	0.1	9.9	11.5	0	0	0	-6.8	lipid metabolism.Phospholipid synthesis.1-acylglycerol-3-phosphate O-acyltransferase	LPAT2 (Lysophosphatidyl acyltransferase 2); 1-acylglycerol-3-phosphate O-acyltransferase Encodes an endoplasmic reticulum localized protein with lysophosphatidyl acyltransferase activity. Identical to 1-acyl-sn-glycerol-3-phosphate acyltransferase 2 (EC
MSGI1_76839	NODE_1955_length_168_cov_67.738098	43.6	26.9	6.6	15.3	0	0	2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_55615	NODE_1956_length_224_cov_7.120536	0	0	16.4	8.1	0	0	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_122144	NODE_19565_length_61_cov_12.196721	15.5	19.4	54.3	31.3	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_99594	NODE_19571_length_134_cov_8.134328	0	0	15.7	1.3	0	-3.6	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_122143	NODE_19597_length_61_cov_30.901640	17.3	0.5	3.2	0.8	-5.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_64176	NODE_1960_length_197_cov_210.751266	14.9	8.9	1.7	5	0	0	3.1	0	protein.synthesis.misc ribososomal protein	60S acidic ribosomal protein P1 (RPP1A)  Identical to 60S acidic ribosomal protein P1-1 (RPP1A) [Arabidopsis Thaliana] (GB:Q8LCW9;GB:Q9MAM5); Identical to 60S acidic ribosomal protein P1-3 (RPP1C) [Arabidopsis Thaliana] (GB:Q8LEQ0;GB:Q9FIK9); similar to 6
MSGI1_113503	NODE_19605_length_102_cov_102.362747	61.5	29.1	20.9	22.5	-1.1	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_122142	NODE_19606_length_61_cov_19.180328	0	0	20.3	2.9	0	-2.8	-5.3	0	cell wall.precursor synthesis.UGE	UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5); UDP-glucose 4-epimerase/ protein dimerization Encodes a protein with UDP-D-glucose 4-epimerase activity. Identical to Probable UDP-glucose 4-epimerase At4g10960 (EC 5.1.3.2) (Galactowaldenase) (UDP-gala
MSGI1_73888	NODE_19609_length_174_cov_60.488506	33.8	19.3	46.6	47.4	0	0	0	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_111828	NODE_19627_length_115_cov_12.130435	11	16.5	4.2	29.2	0	2.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_32890	NODE_19628_length_343_cov_5.113703	2.7	0.9	44.7	1.5	0	-4.9	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_74789	NODE_1963_length_172_cov_31.180233	33.9	24.3	7.3	7.1	0	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_25863	NODE_1963_length_416_cov_42.798077	7.1	0.5	57.7	7.8	0	-2.9	-3	0	cell wall	"peroxidase 72 (PER72) (P72) (PRXR8)  Identical to Peroxidase 72 precursor (EC 1.11.1.7) (Atperox P72) (PRXR8) (ATP6a) (PER72) [Arabidopsis Thaliana] (GB:Q9FJZ9;GB:Q43736); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G36430.1); similar"
MSGI1_25863	NODE_1963_length_416_cov_42.798077	7.1	0.5	57.7	7.8	0	-2.9	-3	0	misc.peroxidases	"peroxidase 72 (PER72) (P72) (PRXR8)  Identical to Peroxidase 72 precursor (EC 1.11.1.7) (Atperox P72) (PRXR8) (ATP6a) (PER72) [Arabidopsis Thaliana] (GB:Q9FJZ9;GB:Q43736); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G36430.1); similar"
MSGI1_18706	NODE_19637_length_527_cov_11.912713	12.6	8.6	0.1	0	0	0	7	0	not assigned.unknown	not assigned.unknown
MSGI1_116827	NODE_19642_length_72_cov_34.861111	10.4	19.5	41	28	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_47731	NODE_19646_length_256_cov_21.773438	24.8	10.6	0.2	0.2	0	0	7	5.7	protein.synthesis.misc ribososomal protein	"RPS9 (RIBOSOMAL PROTEIN S9); structural constituent of ribosome ribosomal protein S9, nuclear encoded component of the chloroplast ribosome Identical to 30S ribosomal protein S9, chloroplast precursor (RPS9) [Arabidopsis Thaliana] (GB:Q9XJ27); similar to"
MSGI1_76838	NODE_19657_length_168_cov_7.809524	9.1	13.4	35.5	19.1	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_116323	NODE_19662_length_76_cov_18.578947	14.5	20.4	0	0	0	0	4.9	5.4	hormone metabolism.auxin.signal transduction	"PIN1 (PIN-FORMED 1); transporter Encodes a putative auxin efflux carrier involved in shoot and root development. It is involved in the maintenance of embryonic auxin gradients.  Loss of function severely affects organ initiation, pin1 mutants are charact"
MSGI1_114776	NODE_19673_length_90_cov_65.633331	28.7	9	8.7	8	0	0	1.7	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BXL3 (BETA-XYLOSIDASE 3); hydrolase, hydrolyzing O-glycosyl compounds encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. similar t"
MSGI1_73419	NODE_19681_length_175_cov_23.582857	14.7	16.3	54.8	30.4	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_60024	NODE_19682_length_209_cov_11.789474	2.1	16	8.1	28.6	2.9	1.8	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_36722	NODE_19682_length_315_cov_25.552382	19.6	26.3	0.1	0	0	0	7.6	5.7	not assigned.unknown	not assigned.unknown
MSGI1_93276	NODE_19685_length_142_cov_8.901408	11.1	12.2	45	11.6	0	-2	-2	0	stress.biotic	leucine-rich repeat family protein  similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT4G13810.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT4G13820.1);
MSGI1_84353	NODE_19698_length_155_cov_29.825806	30.4	5.1	9.2	8.4	-2.6	0	1.7	0	amino acid metabolism.synthesis.aspartate family.misc.homoserine.aspartate kinase	AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I); aspartate kinase/ homoserine dehydrogenase Encodes a bifunctional aspartate kinase/homoserine dehydrogenase.  These two activities catalyze the first and the third steps toward the synthesis of the
MSGI1_114339	NODE_19699_length_94_cov_18.404255	0.1	1.3	29.6	16.2	0	0	-8.2	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_35198	NODE_19700_length_326_cov_11.705522	0	0	27.4	25.3	0	0	-5.8	-5.7	not assigned.unknown	not assigned.unknown
MSGI1_36721	NODE_19707_length_315_cov_18.034920	5.7	18.7	70.7	29	0	-1.3	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_94097	NODE_19708_length_141_cov_7.744681	11.1	13	0	0	0	0	4.5	4.7	not assigned.unknown	not assigned.unknown
MSGI1_77889	NODE_19712_length_166_cov_214.921692	126.7	81.2	42.2	80.3	0	0	1.6	0	protein.synthesis.elongation	"elongation factor 1-beta, putative / EF-1-beta, putative  Identical to Elongation factor 1-delta 2 (EF-1-delta 2) (Elongation factor 1B-beta 2) (eEF-1B beta 2) [Arabidopsis Thaliana] (GB:Q9SI20;GB:Q7GA96;GB:Q8LB45); similar to elongation factor 1-beta /"
MSGI1_56163	NODE_19714_length_222_cov_27.549549	17	9	22	46.6	0	0	0	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_65630	NODE_19723_length_193_cov_28.445597	9.5	7.7	64.7	52.6	0	0	-2.8	-2.8	not assigned.unknown	not assigned.unknown
MSGI1_98009	NODE_19734_length_136_cov_44.485294	48.4	29.6	17.3	30	0	0	1.5	0	protein.synthesis.misc ribososomal protein	ATRPS13A (RIBOSOMAL PROTEIN S13A); structural constituent of ribosome Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development Identical to 40S ribosomal protein S13-1 (RPS13A) [Arabidopsis Thaliana] (GB:P59223;GB:P49203;G
MSGI1_58798	NODE_19735_length_213_cov_111.037560	125.7	277.3	164.2	392.2	1.1	1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_50933	NODE_19750_length_242_cov_18.363636	10.7	39.9	23.3	60.9	1.9	1.4	0	0	transport.metal	"YSL1 (YELLOW STRIPE LIKE 1); oligopeptide transporter Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1). similar to YSL2 (YELLOW STRIPE LIKE 2), oligopeptide transporter [Arabidopsis thaliana] (TAIR"
MSGI1_25044	NODE_19753_length_427_cov_27.302107	21.5	27.9	4.4	1.8	0	0	2.3	4	signalling.G-proteins	"ATGB2 (GTP-BINDING 2); GTP binding GTP-binding protein ATGB2 similar to AT-RAB2 (Arabidopsis Rab GTPase homolog B1c), GTP binding [Arabidopsis thaliana] (TAIR:AT4G17170.1); similar to small GTP-binding protein [Carica papaya] (GB:BAA88497.1); contains In"
MSGI1_73886	NODE_19766_length_174_cov_31.965517	16.5	91.7	45.8	54.9	2.5	0	-1.5	0	cell wall.cell wall proteins.LRR	leucine-rich repeat family protein  similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT2G15880.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT
MSGI1_52420	NODE_19773_length_236_cov_12.733051	3.7	3.1	26.2	6.8	0	-1.9	-2.8	0	protein.degradation.AAA type	AAA-type ATPase family protein  similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT5G17740.1); similar to putative AAA-type ATPase [Oryza sativa (japonica cultivar-group)] (GB:AAT37997.1); contains InterPro domain AAA-protein subdom
MSGI1_122134	NODE_19776_length_61_cov_12.344262	0	0	14	8.2	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_79526	NODE_19778_length_163_cov_24.601227	0	0	57.8	54.7	0	0	-6.9	-6.8	not assigned.unknown	not assigned.unknown
MSGI1_47086	NODE_19789_length_259_cov_11.312741	7.3	55.6	26.5	56.3	2.9	1.1	0	0	RNA.regulation of transcription.putative transcription regulator	mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein  similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G12080.2); sim
MSGI1_122133	NODE_19793_length_61_cov_16.196722	0	0	18.7	0	0	-5.2	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_70230	NODE_19805_length_182_cov_30.104395	33.1	29.3	100.9	63.2	0	0	-1.6	-1.1	transporter.sugars	"hexose transporter, putative  Identical to Probable plastidic glucose transporter 2 [Arabidopsis Thaliana] (GB:Q9FYG3); similar to SGB1, carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G79820.2); similar to Sugar transporter [Medic"
MSGI1_107858	NODE_19810_length_125_cov_18.983999	6.3	2.7	19.1	43.4	0	0	0	-4	not assigned.unknown	not assigned.unknown
MSGI1_64174	NODE_19813_length_197_cov_65.020302	32	13.4	10.2	11.3	0	0	1.6	0	tetrapyrrole synthesis.magnesium chelatase	"CHLI1 (CHLORINA 42); magnesium chelatase Encodes the CHLI subunit of magnesium chelatase which is required for chlorophyll biosynthesis. Identical to Magnesium-chelatase subunit chlI, chloroplast precursor (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase) (P"
MSGI1_8484	NODE_1982_length_832_cov_28.143028	17.5	20.2	0.2	0	0	0	6.5	5.3	not assigned.unknown	not assigned.unknown
MSGI1_102220	NODE_19830_length_131_cov_6.740458	1.2	2.3	13.9	11.7	0	0	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_42009	NODE_19833_length_284_cov_28.130281	19.5	12.9	22.2	73.3	0	1.7	0	-2.5	not assigned.unknown	not assigned.unknown
MSGI1_77298	NODE_19836_length_167_cov_12.868263	0	0	26.7	3.7	0	-2.9	-5.7	0	not assigned.unknown	not assigned.unknown
MSGI1_79525	NODE_19848_length_163_cov_31.938650	40.5	203.6	71.9	82.3	2.3	0	0	1.3	not assigned.unknown	not assigned.unknown
MSGI1_116826	NODE_19850_length_72_cov_18.013889	11.6	50.8	0.4	0	2.1	0	4.9	6.7	protein.degradation	DELTA-VPE (delta vacuolar processing enzyme); cysteine-type endopeptidase Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds.  Mutants display abnormal seed coat develo
MSGI1_90373	NODE_1986_length_146_cov_160.568497	159.9	35	0.5	0.2	-2.2	0	8.3	7.5	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX3 (Lipoxygenase 3); iron ion binding / lipoxygenase Lipoxygenase similar to lipoxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G67560.1); similar to lipoxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G72520.1); similar to LOX2 (LIPOXYGENA"
MSGI1_69782	NODE_19866_length_183_cov_7.043716	7.2	1.1	15.3	0.4	0	-5.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_51397	NODE_19875_length_240_cov_55.424999	17.2	7.1	67	26	0	-1.4	-2	-1.9	cell wall.degradation.mannan-xylose-arabinose-fucose	"(1-4)-beta-mannan endohydrolase, putative  similar to (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] (TAIR:AT3G10890.1); similar to hypothetical protein [Thellun (GB:ABB45852.1); contains InterPro domain Glycoside hydrolase, family 5; ("
MSGI1_94853	NODE_19878_length_140_cov_176.657150	24.3	88.7	50.8	14.5	1.9	-1.8	0	2.6	not assigned.unknown	not assigned.unknown
MSGI1_106893	NODE_19893_length_126_cov_6.301587	15.3	2.7	25.4	20.9	0	0	0	-3	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G41740.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thal"
MSGI1_69780	NODE_19896_length_183_cov_8.459017	2.4	1	8.5	19.3	0	0	0	-4.3	amino acid metabolism.degradation.glutamate family.proline	"ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5, PROLINE OXIDASE); proline dehydrogenase Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress.  The pro"
MSGI1_91092	NODE_19898_length_145_cov_16.372414	19.2	17.9	25.5	6.6	0	-1.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_122123	NODE_19910_length_61_cov_16.295082	19.2	12	3.2	2.9	0	0	2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_52419	NODE_19919_length_236_cov_135.097458	53.7	74.4	0.2	0.2	0	0	8.1	8.5	not assigned.unknown	not assigned.unknown
MSGI1_34955	NODE_1992_length_328_cov_60.908535	299.3	154.4	80.6	129.7	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_122122	NODE_19922_length_61_cov_189.081970	132.4	150.3	0	0	0	0	8	8.2	stress.biotic	"pathogenesis-related protein, putative  similar to allergen V5/Tpx-1-related family protein [Arabidopsis thaliana] (TAIR:AT5G57625.1); similar to Allergen V5/Tpx-1 related [Medicago truncatula] (GB:ABE83411.1); contains InterPro domain Ves allergen; (Int"
MSGI1_76302	NODE_19928_length_169_cov_58.881657	65.1	1.7	10.4	1.1	-5.3	0	2.6	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_76302	NODE_19928_length_169_cov_58.881657	65.1	1.7	10.4	1.1	-5.3	0	2.6	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G29660.1); similar to GDSL-lipase 1 [Capsicum annuum] (GB:AAZ23955.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; ("
MSGI1_122121	NODE_19931_length_61_cov_23.606558	13.4	11	0	0	0	0	4.7	4.5	signalling.G-proteins	"AtRABA1c (Arabidopsis Rab GTPase homolog A1c); GTP binding  similar to AtRABA1d/AtRab11B/AthSGBP (Arabidopsis Rab GTPase homolog A1d), GTP binding [Arabidopsis thaliana] (TAIR:AT4G18800.1); similar to putative GTP-binding protein [Gossypium hirsutum] (GB"
MSGI1_122120	NODE_19935_length_61_cov_38.885246	0	0.2	183.9	56.4	0	-1.7	-8.5	-8.1	cell wall	GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP5) Identical to Germin-like protein subfamily 2 member 1 precursor (GLP4) [Arabidopsis Thaliana] (GB:P94014;GB:O80538;GB:P94097); similar
MSGI1_122120	NODE_19935_length_61_cov_38.885246	0	0.2	183.9	56.4	0	-1.7	-8.5	-8.1	stress.abiotic.unspecified	GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP5) Identical to Germin-like protein subfamily 2 member 1 precursor (GLP4) [Arabidopsis Thaliana] (GB:P94014;GB:O80538;GB:P94097); similar
MSGI1_80123	NODE_19937_length_162_cov_10.098765	15.2	13.5	46.9	11.9	0	-2	-1.6	0	glycolysis.PEPCK	"PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE); kinase Encodes a phosphoenolpyruvate carboxylase kinase that is expressed at highest levels in leaves. Expression is induced by light. similar to PPCK2 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2), kinase [Ar"
MSGI1_74786	NODE_19940_length_172_cov_14.936047	80.4	67.9	10.9	26.3	0	0	2.9	1.4	not assigned.unknown	not assigned.unknown
MSGI1_98770	NODE_19945_length_135_cov_17.333334	11.5	8	0	0	0	0	4.5	0	protein.synthesis.initiation	"EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E); RNA binding / translation initiation factor eIF4E protein.  The cum1 mutation affects the local spreading of CMV within the inoculated leaf, delaying accumulation of cucumber mosaic virus coat protein."
MSGI1_122117	NODE_19948_length_61_cov_67.639343	17.3	16.2	59.8	82.8	0	0	-1.8	-2.4	OPP.oxidative PP.6-phosphogluconate dehydrogenase	6-phosphogluconate dehydrogenase family protein  similar to 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT1G64190.1); similar to 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT5G41670.2); s
MSGI1_102219	NODE_19957_length_131_cov_23.595419	17.3	20.2	45.5	17.2	0	-1.4	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_67639	NODE_19961_length_188_cov_7.803192	0.9	1.5	4.7	14.7	0	0	0	-3.3	stress.biotic	PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. Identical to Hevein-like protein precursor (HE
MSGI1_83108	NODE_19963_length_157_cov_5.420382	9.3	13.6	2	1.2	0	0	0	3.5	stress.biotic	leucine-rich repeat family protein  similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT4G13810.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT4G13820.1);
MSGI1_81839	NODE_19974_length_159_cov_60.213837	24.2	39.9	19.5	5.2	0	0	0	2.9	not assigned.unknown	not assigned.unknown
MSGI1_115311	NODE_19978_length_85_cov_41.400002	35.7	14.7	4	5.5	0	0	3.2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L28 (RPL28A)  Identical to 60S ribosomal protein L28-1 (RPL28A) [Arabidopsis Thaliana] (GB:O82204); similar to 60S ribosomal protein L28 (RPL28C) [Arabidopsis thaliana] (TAIR:AT4G29410.2); similar to unknown [Solanum tuberosum] (GB:A
MSGI1_122114	NODE_19995_length_61_cov_38.770493	21.4	4	6	3.3	-2.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_90370	NODE_20003_length_146_cov_85.527397	44.7	209	186.4	347.3	2.2	0	-2.1	0	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN1 (DARK INDUCIBLE 6) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumul"
MSGI1_40536	NODE_20007_length_292_cov_11.369863	16.6	2.2	2.2	1.7	-2.9	0	2.9	0	RNA.regulation of transcription.WRKY domain transcription factor family	TTR1 (WRKY domain family protein 16); transcription factor Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. Identical to Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16)
MSGI1_40536	NODE_20007_length_292_cov_11.369863	16.6	2.2	2.2	1.7	-2.9	0	2.9	0	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G41750.2); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thal"
MSGI1_20537	NODE_20010_length_493_cov_9.904665	6.9	28.6	5.5	12.9	2.1	0	0	0	transport.metal	"HMA4 (Heavy metal ATPase 4); cadmium-transporting ATPase Encodes a protein with similarity to Zn ATPase. Can rescue Zn deficiency in yeast and  Cd resistance, suggesting a role in Zn and Cd transport. Identical to Putative cadmium/zinc-transporting ATPas"
MSGI1_81838	NODE_20013_length_159_cov_185.050308	97.3	132.2	48.8	155.6	0	1.7	1	0	not assigned.unknown	not assigned.unknown
MSGI1_33708	NODE_20013_length_337_cov_29.688427	13.1	20.9	66.7	16.8	0	-2	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_52417	NODE_20017_length_236_cov_9.224576	9.9	12.9	1.3	0.3	0	0	0	5.4	not assigned.unknown	not assigned.unknown
MSGI1_43134	NODE_20018_length_278_cov_5.809352	0	0	2.6	15.8	0	2.6	0	-5	not assigned.unknown	not assigned.unknown
MSGI1_32314	NODE_20022_length_348_cov_10.143678	0.6	0.7	23.5	23.6	0	0	-5.3	-5.1	stress.abiotic.heat	"heat shock protein, putative  similar to heat shock protein 70, putative / HSP70, putative [Arabidopsis thaliana] (TAIR:AT1G79920.2); similar to HSP91 (Heat shock protein 91) [Arabidopsis thaliana] (TAIR:AT1G79930.1); similar to Os06g0679800 [Oryza sativ"
MSGI1_107857	NODE_20033_length_125_cov_19.632000	6.3	26.5	12	35.3	2.1	1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_56693	NODE_20035_length_220_cov_10.045455	11.4	0.1	0.2	1.4	-6.8	0	5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_27171	NODE_20051_length_400_cov_54.450001	73.7	33.9	31.8	41.8	-1.1	0	1.2	0	mitochondrial electron transport / ATP synthesis.cytochrome c oxidase	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G02510.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15588.1)
MSGI1_33568	NODE_20057_length_338_cov_8.375740	0.3	0.2	23.3	7.9	0	0	-6.3	0	stress.biotic	leucine-rich repeat family protein  similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G74180.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT5G49290.1); similar to leucine-rich repeat family pr
MSGI1_87624	NODE_20062_length_150_cov_247.800003	47	22.6	15.7	37.6	0	0	1.6	0	protein.synthesis.misc ribososomal protein	"EMB3010 (EMBRYO DEFECTIVE 3010); structural constituent of ribosome  Identical to 40S ribosomal protein S6-2 (RPS6B) [Arabidopsis Thaliana] (GB:P51430;GB:O04670;GB:Q9LX91); similar to RPS6 (RIBOSOMAL PROTEIN S6), structural constituent of ribosome [Arabi"
MSGI1_60631	NODE_20067_length_207_cov_6.966184	3	15.4	1.4	20.9	0	3.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_62348	NODE_20072_length_202_cov_40.816833	13.3	17.5	42.8	29.1	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_111130	NODE_20082_length_121_cov_22.008265	8.4	19.1	20	46.8	0	1.2	0	-1.3	transport.ABC transporters and multidrug resistance systems	"PDR8/PEN3 (PLEIOTROPIC DRUG RESISTANCE8); ATPase, coupled to transmembrane movement of substances ATP binding cassette transporter. Localized to the plasma membrane in uninfected cells. In infected leaves, the protein concentrated at  infection sites. Co"
MSGI1_90368	NODE_20089_length_146_cov_24.301371	10.8	16.4	1.2	2.2	0	0	0	2.9	not assigned.unknown	not assigned.unknown
MSGI1_122109	NODE_20091_length_61_cov_19.901640	3.4	14	27.9	29.7	0	0	-3	0	RNA.regulation of transcription.GRAS transcription factor family	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_122109	NODE_20091_length_61_cov_19.901640	3.4	14	27.9	29.7	0	0	-3	0	development.unspecified	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_24955	NODE_20113_length_428_cov_112.705605	12.4	70.9	38.9	8.1	2.5	-2.3	-1.6	3.1	RNA.regulation of transcription.C3H zinc finger family	CZF1/ZFAR1; transcription factor  similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G55980.1); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR0021
MSGI1_91089	NODE_20117_length_145_cov_7.248276	4.1	2.1	15.3	0.2	0	-6.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_30546	NODE_20120_length_364_cov_13.000000	16.4	0.1	3.5	0.6	-7.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_102218	NODE_20124_length_131_cov_42.847328	0.5	0.3	76.4	0.3	0	-8	-7.3	0	not assigned.unknown	not assigned.unknown
MSGI1_52976	NODE_20128_length_234_cov_9.047009	0.5	1	11.9	4.8	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_85604	NODE_2015_length_153_cov_9.006536	1.9	0.7	19.1	1.4	0	-3.8	-3.3	0	signalling.receptor kinases.leucine rich repeat XII	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G47570.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsi"
MSGI1_116105	NODE_20152_length_78_cov_21.679487	11.8	13.1	0.4	0.7	0	0	4.9	4.2	not assigned.unknown	not assigned.unknown
MSGI1_12439	NODE_20154_length_676_cov_12.550296	17.4	2	5.3	4.5	-3.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_115671	NODE_20163_length_82_cov_15.353659	3.8	11.2	0	0	0	0	0	4.5	transport.sulphate	"SULTR3;4 (SULTR3;4); sulfate transporter Encodes sulfate transporter Sultr3;4. Identical to Probable sulfate transporter 3.4 (SULTR3;4) [Arabidopsis Thaliana] (GB:Q9LW86); similar to AST91 (SULFATE TRANSPORTER 91), sulfate transporter [Arabidopsis thalia"
MSGI1_75309	NODE_2017_length_171_cov_25.128654	7.3	2.7	32.3	0.6	0	-5.8	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_112418	NODE_2020_length_110_cov_26.363636	0	0	43.6	33.9	0	0	-6.4	-6.1	not assigned.unknown	not assigned.unknown
MSGI1_86972	NODE_20201_length_151_cov_79.377487	30.3	73	61.2	6.6	1.3	-3.2	0	3.5	not assigned.unknown	not assigned.unknown
MSGI1_44702	NODE_20216_length_270_cov_7.166667	0.1	0.6	11	18.1	0	0	-6.8	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_49489	NODE_20231_length_248_cov_9.596774	2.9	3.2	26.8	12.3	0	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_32887	NODE_20232_length_343_cov_14.154519	5.8	8	19.4	3.2	0	-2.6	0	0	protein.degradation.ubiquitin.E3.SCF.FBOX	F-box family protein  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G39460.1); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G39480.1); similar to Os08g0105100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060784.1
MSGI1_42410	NODE_20239_length_282_cov_9.248227	15.3	18.9	0.8	0.3	0	0	4.3	6	not assigned.unknown	not assigned.unknown
MSGI1_75308	NODE_20240_length_171_cov_13.105263	0.1	0.7	29.4	11.7	0	0	-8.2	-4.1	not assigned.unknown	not assigned.unknown
MSGI1_86971	NODE_2025_length_151_cov_25.649006	25.5	3	4.6	5.7	-3.1	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_56691	NODE_20257_length_220_cov_9.286364	1	0.2	31.8	2.7	0	-3.6	-5	0	cell wall	"peroxidase 72 (PER72) (P72) (PRXR8)  Identical to Peroxidase 72 precursor (EC 1.11.1.7) (Atperox P72) (PRXR8) (ATP6a) (PER72) [Arabidopsis Thaliana] (GB:Q9FJZ9;GB:Q43736); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G36430.1); similar"
MSGI1_56691	NODE_20257_length_220_cov_9.286364	1	0.2	31.8	2.7	0	-3.6	-5	0	misc.peroxidases	"peroxidase 72 (PER72) (P72) (PRXR8)  Identical to Peroxidase 72 precursor (EC 1.11.1.7) (Atperox P72) (PRXR8) (ATP6a) (PER72) [Arabidopsis Thaliana] (GB:Q9FJZ9;GB:Q43736); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G36430.1); similar"
MSGI1_110907	NODE_20273_length_122_cov_48.122952	6.6	9	78.8	54.5	0	0	-3.6	-2.6	not assigned.unknown	not assigned.unknown
MSGI1_15280	NODE_20302_length_596_cov_21.800335	3.4	1.9	64.3	1.8	0	-5.2	-4.2	0	transport.amino acids	"AAP7 (amino acid permease 7); amino acid permease Encodes nonfunctional amino acid transporter.  AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of"
MSGI1_55072	NODE_20303_length_226_cov_10.123894	5.1	2.7	48.4	33.2	0	0	-3.2	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_76830	NODE_20309_length_168_cov_6.779762	0.5	0	15.7	8.8	0	0	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_41240	NODE_20314_length_288_cov_13.038195	4.3	3.5	36.4	1.7	0	-4.4	-3.1	0	transport.peptides and oligopeptides	"proton-dependent oligopeptide transport (POT) family protein  similar to nitrate transporter, putative [Arabidopsis thaliana] (TAIR:AT1G27040.1); similar to ATNRT1:2 (NITRATE TRANSPORTER 1:2), calcium ion binding / transporter [Arabidopsis thaliana] (TAI"
MSGI1_42409	NODE_20332_length_282_cov_8.829787	0	0	13.6	22.5	0	0	-4.8	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_10800	NODE_20343_length_731_cov_33.153214	4.6	20.3	12.9	2.8	0	0	0	2.9	RNA.processing.ribonucleases	"CCR4-NOT transcription complex protein, putative  similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT5G22250.1); similar to CCR4 associated factor 1-related protein [Capsicum annuum] (GB:ABG66307.1); contains Inter"
MSGI1_81285	NODE_20368_length_160_cov_7.637500	0.1	0	5.3	17.9	0	0	0	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_61680	NODE_20372_length_204_cov_11.254902	24.7	6.5	7.7	7.6	-1.9	0	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	ELI3-1 (ELICITOR-ACTIVATED GENE 3); oxidoreductase/ zinc ion binding Encodes a putative mannitol dehydrogenase. Identical to Probable mannitol dehydrogenase 1 (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase 1) (ELI3-1) [Arabidopsis Thaliana] (GB:Q02
MSGI1_14720	NODE_20375_length_611_cov_10.234042	2.5	8	22.2	3.7	0	-2.6	-3.2	0	development.unspecified	"YLS9 (YELLOW-LEAF-SPECIFIC GENE 9) Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine"
MSGI1_62718	NODE_20385_length_201_cov_64.398010	24.8	31.4	0.4	0.4	0	0	6	6.3	not assigned.unknown	not assigned.unknown
MSGI1_69778	NODE_20412_length_183_cov_7.644809	0	0	12.3	19.3	0	0	-4.6	-5.3	cell wall.precursor synthesis	"DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101); intramolecular transferase, phosphotransferases encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes). Identical to Pho"
MSGI1_63768	NODE_20420_length_198_cov_6.873737	0.1	0.2	3.6	17	0	0	0	-6.4	not assigned.unknown	not assigned.unknown
MSGI1_117443	NODE_20422_length_67_cov_41.164181	4.8	28.8	11	18.1	2.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_108868	NODE_20423_length_124_cov_14.056452	6.1	3.2	40.7	3.8	0	-3.4	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_29910	NODE_20423_length_370_cov_19.416216	4.4	5.2	14.4	23	0	0	0	-2.1	cell wall	"SCPL31 (serine carboxypeptidase-like 31); serine carboxypeptidase  similar to SCPL30 (serine carboxypeptidase-like 30), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT4G15100.1); similar to serine carboxypeptidase S10 family protein [Arabidopsis"
MSGI1_29910	NODE_20423_length_370_cov_19.416216	4.4	5.2	14.4	23	0	0	0	-2.1	protein.degradation.serine protease	"SCPL31 (serine carboxypeptidase-like 31); serine carboxypeptidase  similar to SCPL30 (serine carboxypeptidase-like 30), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT4G15100.1); similar to serine carboxypeptidase S10 family protein [Arabidopsis"
MSGI1_113501	NODE_2043_length_102_cov_98.088234	66.6	27	23.6	28.1	-1.3	0	1.5	0	stress.abiotic.heat	BIP (LUMINAL BINDING PROTEIN); ATP binding luminal binding protein (BiP) Identical to Luminal-binding protein 2 precursor (BiP2) (AtBP2) [Arabidopsis Thaliana] (GB:Q39043;GB:Q39042); Identical to Luminal-binding protein 1 precursor (BiP1) (AtBP1) [Arabido
MSGI1_13375	NODE_20446_length_648_cov_26.092592	24.9	17	0.4	1.2	0	0	6	3.8	not assigned.unknown	not assigned.unknown
MSGI1_56438	NODE_2045_length_221_cov_105.855202	85.8	16.8	75.1	48.9	-2.4	0	0	-1.5	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX2 (LIPOXYGENASE 2) Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection. Identical to Lipoxygenase, chloroplast precur"
MSGI1_30947	NODE_20459_length_360_cov_72.430557	11.8	41.4	41.7	24.9	1.8	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_91806	NODE_20464_length_144_cov_38.444443	12.1	15	35.1	39.9	0	0	0	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_56437	NODE_20499_length_221_cov_9.000000	4.7	0	19.8	0.5	0	-5.3	0	0	N-metabolism.N-degradation.glutamate dehydrogenase	GDH1 (GLUTAMATE DEHYDROGENASE 1); oxidoreductase encodes the beta-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells. Identical to Glutamate dehydrogenase 1 (EC 1.4.1.3) (GD
MSGI1_117442	NODE_20505_length_67_cov_23.985075	6.6	15.3	0	0	0	0	0	4.9	hormone metabolism.auxin.signal transduction	ARF4 (AUXIN RESPONSE FACTOR 4); transcription factor Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity. Identical to Auxin
MSGI1_117442	NODE_20505_length_67_cov_23.985075	6.6	15.3	0	0	0	0	0	4.9	"RNA.regulation of transcription.ARF, Auxin Response Factor family"	ARF4 (AUXIN RESPONSE FACTOR 4); transcription factor Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity. Identical to Auxin
MSGI1_6719	NODE_2051_length_926_cov_46.223541	39.8	23.8	13.5	22.6	0	0	1.6	0	protein.synthesis.initiation	EIF3K (eukaryotic translation initiation factor 3K) Encodes initiation factor 3k (EIF3k). Identical to Eukaryotic translation initiation factor 3 subunit 12 (eIF-3 p25) (eIF3k) (TIF3K1) [Arabidopsis Thaliana] (GB:Q9SZA3); similar to Eukaryotic translation
MSGI1_47501	NODE_20530_length_257_cov_11.525291	17.9	9.4	0	0.2	0	0	5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_53762	NODE_20536_length_231_cov_76.705627	44.7	36.3	16.6	41.2	0	1.3	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_108867	NODE_20555_length_124_cov_78.927422	5.6	2.7	78.7	4.9	0	-4	-3.8	0	protein.degradation.cysteine protease	"cysteine proteinase, putative  similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G48350.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (Int"
MSGI1_30838	NODE_20557_length_361_cov_21.088642	36.4	2.3	15.5	7.9	-4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_93272	NODE_2056_length_142_cov_24.901409	24.3	16.2	62.2	26.7	0	-1.2	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_40693	NODE_20568_length_291_cov_8.323024	3.8	1.3	15.6	2	0	-3	0	0	protein.degradation.ubiquitin.E3.SCF.FBOX	F-box family protein  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G21510.1); similar to At1g61340 [Medicago truncatula] (GB:ABD32592.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810)
MSGI1_40693	NODE_20568_length_291_cov_8.323024	3.8	1.3	15.6	2	0	-3	0	0	development.unspecified	F-box family protein  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G21510.1); similar to At1g61340 [Medicago truncatula] (GB:ABD32592.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810)
MSGI1_21912	NODE_2057_length_471_cov_78.974525	49	14.2	13.5	29.6	-1.8	0	1.9	0	protein.folding	"CPN20 (CHAPERONIN 20); calmodulin binding Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES. Identical to 20 kDa chaperonin, chloroplast precursor (Protein Cpn21) (Chloroplast protein Cpn10) (Chloroplast chaperonin 1"
MSGI1_91086	NODE_20575_length_145_cov_17.600000	9.8	9.9	34	13.9	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_82459	NODE_20575_length_158_cov_21.297468	59.2	13.9	7.3	10.8	-2.1	0	3	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_77295	NODE_20581_length_167_cov_5.682635	8.4	1.8	3.8	18.7	0	2.3	0	-3.4	not assigned.unknown	not assigned.unknown
MSGI1_87620	NODE_20595_length_150_cov_15.126667	5	19.9	4.4	3.3	0	0	0	2.6	RNA.regulation of transcription.unclassified	"ATMBF1C/MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator.  May serve as a brid"
MSGI1_87620	NODE_20595_length_150_cov_15.126667	5	19.9	4.4	3.3	0	0	0	2.6	hormone metabolism.ethylene.induced-regulated-responsive-activated	"ATMBF1C/MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator.  May serve as a brid"
MSGI1_57550	NODE_20595_length_217_cov_13.981566	1.2	1.8	12.2	29.7	0	0	0	-4	not assigned.unknown	not assigned.unknown
MSGI1_107854	NODE_20598_length_125_cov_5.784000	0	0	6.5	12.9	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_84349	NODE_20608_length_155_cov_32.012905	35.1	23.5	0.5	0	0	0	6.1	5.6	not assigned.unknown	not assigned.unknown
MSGI1_71115	NODE_20610_length_180_cov_5.788889	18.2	33.1	41.4	11.3	0	-1.9	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_84996	NODE_20613_length_154_cov_6.409091	0	0	16.3	13.8	0	0	-5	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_116201	NODE_20613_length_77_cov_9.766233	3.6	6.5	33.2	16	0	0	-3.2	0	misc.cytochrome P450	"CYP71A23 (cytochrome P450, family 71, subfamily A, polypeptide 23); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71A23 (EC 1.14.-.-) (CYP71A23) [Arabidopsis Thaliana] (GB:Q9STL0); similar to CYP71A26 (cytochrome P450, family 71, s"
MSGI1_11913	NODE_20619_length_692_cov_28.515896	3.1	9.1	19.8	7.2	0	0	-2.7	0	cell wall	ATOSM34 (OSMOTIN 34) osmotin-like protein Identical to Osmotin-like protein OSM34 precursor (OSM34) [Arabidopsis Thaliana] (GB:P50700;GB:Q9T0D2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75050.1); similar to osmotin-like protein I [Gos
MSGI1_11913	NODE_20619_length_692_cov_28.515896	3.1	9.1	19.8	7.2	0	0	-2.7	0	stress.abiotic	ATOSM34 (OSMOTIN 34) osmotin-like protein Identical to Osmotin-like protein OSM34 precursor (OSM34) [Arabidopsis Thaliana] (GB:P50700;GB:Q9T0D2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75050.1); similar to osmotin-like protein I [Gos
MSGI1_112286	NODE_2062_length_111_cov_64.180183	36.5	12.5	21.8	18.7	-1.5	0	0	0	tetrapyrrole synthesis.magnesium chelatase	"CHLI2; magnesium chelatase encodes a second Chl I gene (CHLI2), a subunit of magnesium chelatase which is required for chlorophyll biosynthesis.  Protein not detectable in wild type and is targeted for rapid degradation in vivo. similar to CHLI1 (CHLORIN"
MSGI1_26838	NODE_2063_length_404_cov_323.608917	68.4	52.5	72.5	108.4	0	0	0	-1	protein.postranslational modification	"ADP-ribosylation factor, putative A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other AR"
MSGI1_46292	NODE_20631_length_263_cov_14.562737	4.5	6.9	71.7	3.6	0	-4.3	-4	0	"metal handling.binding, chelation and storage"	"ATFP6 (FARNESYLATED PROTEIN 6); metal ion binding putative farnesylated protein (At4g38580) mRNA, complete similar to heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related [Arabidopsis thaliana] (TAIR:AT4G35060.1); similar to"
MSGI1_50466	NODE_20635_length_244_cov_5.852459	0.2	0.6	11.3	17.2	0	0	-5.8	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_56435	NODE_20642_length_221_cov_9.203620	2.2	7.1	22	0.5	0	-5.5	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_30770	NODE_20653_length_362_cov_12.618785	12.4	0.9	32.3	1.1	-3.8	-4.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_105906	NODE_20655_length_127_cov_16.889763	3.6	6.5	27.9	6.4	0	-2.1	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_58473	NODE_20680_length_214_cov_68.911217	7.8	29.2	26.3	29.3	1.9	0	0	0	RNA.regulation of transcription.GRAS transcription factor family	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_58473	NODE_20680_length_214_cov_68.911217	7.8	29.2	26.3	29.3	1.9	0	0	0	development.unspecified	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_60630	NODE_20693_length_207_cov_5.236715	1.6	1.4	5.6	15.5	0	0	0	-3.5	misc.cytochrome P450	"CYP76C6 (cytochrome P450, family 76, subfamily C, polypeptide 6); oxygen binding member of CYP76C similar to CYP76C4 (cytochrome P450, family 76, subfamily C, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G45550.1); similar to CYP76C2 (c"
MSGI1_92538	NODE_20702_length_143_cov_8.426574	2.9	7.4	17.9	6.9	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_114171	NODE_20715_length_96_cov_9.885417	8.3	15.3	13.7	1.3	0	-3.4	0	3.6	not assigned.unknown	not assigned.unknown
MSGI1_12937	NODE_2073_length_660_cov_15.336364	17.3	55.8	16	12	1.7	0	0	2.2	transport.amino acids	"AAP3 (amino acid permease 3); amino acid permease Amino acid permease which transports basic amino acids. similar to AAP4 (amino acid permease 4), amino acid permease [Arabidopsis thaliana] (TAIR:AT5G63850.1); similar to AAP5 (amino acid permease 5), ami"
MSGI1_97148	NODE_20732_length_137_cov_16.364964	28	54.4	20.6	46.3	0	1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_86261	NODE_20753_length_152_cov_9.302631	2.3	1.6	12.8	0.7	0	-4.2	0	0	cell wall	"protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11530.1); similar to CRK11 (CYSTEINE-RICH RLK11), kinase [Arabidopsis thaliana] (TAIR:AT4G23190.1); similar to receptor-like protein kinase homolog R"
MSGI1_86261	NODE_20753_length_152_cov_9.302631	2.3	1.6	12.8	0.7	0	-4.2	0	0	signalling.receptor kinases.DUF 26	"protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11530.1); similar to CRK11 (CYSTEINE-RICH RLK11), kinase [Arabidopsis thaliana] (TAIR:AT4G23190.1); similar to receptor-like protein kinase homolog R"
MSGI1_74779	NODE_20760_length_172_cov_32.720932	0.3	1.7	26.1	11.6	0	0	-6.4	0	hormone metabolism.ethylene.induced-regulated-responsive-activated	"universal stress protein (USP) family protein  similar to ethylene-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G09740.1); similar to universal stress protein family [Medicago truncatula] (GB:ABE78101.1); contains InterPro domain Universa"
MSGI1_116824	NODE_2078_length_72_cov_180.222229	576.4	313.2	213.5	597.6	0	1.5	1.4	0	PS.calvin cyle.GAP	"GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase Encodes chloroplast localized glyceraldehyde-3-phosphate dehydrogenase. Identical to Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor (EC"
MSGI1_74349	NODE_20788_length_173_cov_28.543352	11.5	35.6	43.2	7.5	1.6	-2.5	-1.9	2.2	not assigned.unknown	not assigned.unknown
MSGI1_41239	NODE_20796_length_288_cov_33.892361	36.1	1.6	0.6	0.1	-4.5	0	5.9	0	not assigned.unknown	not assigned.unknown
MSGI1_44915	NODE_20797_length_269_cov_4.635688	0	0	4	11.8	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_9276	NODE_2080_length_792_cov_80.005051	72.3	151.2	103.1	119	1.1	0	0	0	signalling.phosphorelay	"AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3); histidine phosphotransfer kinase Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs).  AHPs function as redundant positive regulators of cytokinin signaling.  Membe"
MSGI1_9276	NODE_2080_length_792_cov_80.005051	72.3	151.2	103.1	119	1.1	0	0	0	hormone metabolism.cytokinin.signal transduction	"AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3); histidine phosphotransfer kinase Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs).  AHPs function as redundant positive regulators of cytokinin signaling.  Membe"
MSGI1_29333	NODE_20801_length_376_cov_31.755320	58.1	26.4	15.5	15.3	-1.1	0	1.9	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L26 (RPL26A)  Identical to 60S ribosomal protein L26-1 (RPL26A) [Arabidopsis Thaliana] (GB:P51414;GB:Q9M2W7); similar to 60S ribosomal protein L26 (RPL26B) [Arabidopsis thaliana] (TAIR:AT5G67510.1); similar to 60S ribosomal protein
MSGI1_122098	NODE_20806_length_61_cov_162.000000	3.5	0	19.5	96.8	0	2.3	-2.5	-7.6	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase, putative  similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to LOX1 (Lipoxygenase 1), lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G55020.1); similar to lipoxygenase, putati"
MSGI1_116418	NODE_20806_length_75_cov_25.093334	7	11	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_42195	NODE_20815_length_283_cov_8.667845	3.8	3.9	21.7	8.4	0	0	-2.5	0	lipid metabolism.lipid degradation.beta-oxidation.acyl CoA DH	"ACX4 (ACYL-COA OXIDASE 4); oxidoreductase Encodes a short-chain acyl-CoA oxidase, which catalyzes the first step of peroxisomal fatty acid beta-oxidation during early, post-germinative growth in oilseed species. Null mutants virtually lack short-chain ac"
MSGI1_116417	NODE_20818_length_75_cov_29.320000	15.1	7.6	0.7	9.6	0	0	4.4	0	misc.UDP glucosyl and glucoronyl transferases	UGT73B2; UDP-glucosyltransferase/ UDP-glycosyltransferase/ flavonol 3-O-glucosyltransferase The At4g34135 gene encodes a flavonol 7-O-glucosyltransferase (EC 2.4.1.237) that glucosylates also with a 20 fold lower activity flavonols (kaempferol and querce
MSGI1_97147	NODE_20827_length_137_cov_4.948905	0.1	0.2	8.8	10.9	0	0	0	-5.8	not assigned.unknown	not assigned.unknown
MSGI1_32682	NODE_20835_length_345_cov_6.292754	1.5	3.8	19.6	5.5	0	0	-3.7	0	misc.UDP glucosyl and glucoronyl transferases	exostosin family protein  similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT5G25820.1); similar to Exostosin-like [Medicago truncatula] (GB:ABE81272.1); contains InterPro domain Exostosin-like; (InterPro:IPR004263)
MSGI1_13440	NODE_20855_length_646_cov_17.249226	20.2	1.5	8.7	5.4	-3.8	0	0	0	cell wall	GLP1 (GERMIN-LIKE PROTEIN 1); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP1) Identical to Germin-like protein subfamily 3 member 1 precursor (AtGER1) (At-GERM1) (AtGLP1) (GLP1) [Arabidopsis Thaliana] (GB:P94040;
MSGI1_13440	NODE_20855_length_646_cov_17.249226	20.2	1.5	8.7	5.4	-3.8	0	0	0	stress.abiotic.unspecified	GLP1 (GERMIN-LIKE PROTEIN 1); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP1) Identical to Germin-like protein subfamily 3 member 1 precursor (AtGER1) (At-GERM1) (AtGLP1) (GLP1) [Arabidopsis Thaliana] (GB:P94040;
MSGI1_76296	NODE_20858_length_169_cov_3.272189	1.5	0.7	14.6	7.9	0	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_102213	NODE_2086_length_131_cov_254.099243	2.8	1.5	217.5	5	0	-5.4	-6.3	0	amino acid metabolism.synthesis.glutamate family.proline.delta 1-pyrroline-5-carboxylate synthetase	P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1) encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions b
MSGI1_64550	NODE_20863_length_196_cov_13.887755	12.5	14	6.8	27.7	0	2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_101390	NODE_20865_length_132_cov_36.113636	32.1	17.2	6.8	18.7	0	0	2.2	0	transport.p- and v-ATPases.H+-transporting two-sector ATPase	"AVA-P1 (vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 1); ATPase/ hydrogen ion transporting ATPase, rotational mechanism vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p1) Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 4 (EC 3."
MSGI1_106881	NODE_20899_length_126_cov_5.000000	0	0.1	21.8	10.7	0	0	-5.4	-6.7	not assigned.unknown	not assigned.unknown
MSGI1_23031	NODE_2090_length_456_cov_17.732456	8.7	11.7	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_38255	NODE_2091_length_305_cov_12.167213	0	0.5	15.3	14.2	0	0	-4.9	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_111653	NODE_20924_length_116_cov_16.387932	55.8	95.3	59.3	30.7	0	0	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_44314	NODE_20937_length_272_cov_74.599266	17.7	43.2	2.3	15.5	1.3	2.8	2.9	1.5	not assigned.unknown	not assigned.unknown
MSGI1_4810	NODE_2094_length_1079_cov_39.087116	31.7	25.9	17.1	52.7	0	1.6	0	0	glycolysis.PK	"pyruvate kinase, putative  similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT5G63680.1); similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT4G26390.1); similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:A"
MSGI1_31507	NODE_20951_length_355_cov_70.309860	158.1	53.3	59.7	47.9	-1.6	0	1.4	0	cell.organisation	"ACT3 (ACTIN 3); structural constituent of cytoskeleton Member of the Actin gene family. Expressed in mature pollen. Identical to Actin-1/3 (ACT3) [Arabidopsis Thaliana] (GB:P10671;GB:P53493;GB:Q9M351); similar to ACT11 (ACTIN-11), structural constituent"
MSGI1_50464	NODE_20952_length_244_cov_36.049179	112.8	39.3	29.4	33.1	-1.5	0	1.9	0	cell.organisation	"ACT7 (actin 7) Member of Actin gene family.Mutants are defective in germination and root growth. Identical to Actin-7 (Actin-2) (ACT7) [Arabidopsis Thaliana] (GB:P53492;GB:P53495); similar to ACT3 (ACTIN 3), structural constituent of cytoskeleton [Arabid"
MSGI1_37966	NODE_20962_length_307_cov_14.814332	3	18.5	2.9	16.8	2.6	2.5	0	0	transport.phosphate	PHO1 (PHOSPHATE 1) mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains. Identical
MSGI1_12336	NODE_20972_length_679_cov_17.435936	24.9	3.6	13.1	2.7	-2.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_110899	NODE_20973_length_122_cov_11.516394	0.1	0	23.1	5.7	0	0	-7.9	0	not assigned.unknown	not assigned.unknown
MSGI1_81281	NODE_20978_length_160_cov_3.487500	5.3	6.9	14.7	1.8	0	-3	0	0	signalling.receptor kinases.RKF3 like	"protein kinase family protein  similar to RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3), kinase [Arabidopsis thaliana] (TAIR:AT2G48010.1); similar to Os05g0423500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055591.1); similar to SHR5-receptor-like k"
MSGI1_55069	NODE_2098_length_226_cov_176.159286	15.9	13.8	56.2	16.8	0	-1.7	-1.8	0	cell wall	GLP10 (GERMIN-LIKE PROTEIN 10); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP10) Identical to Germin-like protein subfamily 2 member 4 precursor (GLP10) [Arabidopsis Thaliana] (GB:Q9M263;GB:O04352); similar to GL
MSGI1_55069	NODE_2098_length_226_cov_176.159286	15.9	13.8	56.2	16.8	0	-1.7	-1.8	0	stress.abiotic.unspecified	GLP10 (GERMIN-LIKE PROTEIN 10); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP10) Identical to Germin-like protein subfamily 2 member 4 precursor (GLP10) [Arabidopsis Thaliana] (GB:Q9M263;GB:O04352); similar to GL
MSGI1_6884	NODE_2098_length_916_cov_12.994541	19.4	2.8	5.4	3.3	-2.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_102211	NODE_20986_length_131_cov_7.740458	0.6	6	13.7	16.2	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_63109	NODE_20986_length_200_cov_19.480000	2.6	21.5	0.7	8.6	3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_48620	NODE_20989_length_252_cov_15.158731	0.1	0.7	28.9	3.8	0	-2.9	-8.2	0	not assigned.unknown	not assigned.unknown
MSGI1_116823	NODE_20990_length_72_cov_13.722222	0	0.8	43.9	29.1	0	0	-6.5	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_66004	NODE_21000_length_192_cov_14.052083	3.1	10.4	21.1	17.8	0	0	-2.8	0	protein.degradation.ubiquitin.E3.SCF.FBOX	kelch repeat-containing F-box family protein  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G24760.1); similar to Os09g0292900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062790.1); similar to kelch repeat-containing F-box-like p
MSGI1_30768	NODE_21003_length_362_cov_25.983425	12.6	16.2	0.1	0	0	0	7	5	not assigned.unknown	not assigned.unknown
MSGI1_122087	NODE_21009_length_61_cov_8.688524	0	0	11.6	6.6	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_41611	NODE_21014_length_286_cov_16.916084	0.1	0.1	24.2	20.3	0	0	-7.9	-7.7	not assigned.unknown	not assigned.unknown
MSGI1_73413	NODE_21032_length_175_cov_12.382857	0.1	0	13.2	13.8	0	0	-7	-4.8	protein.degradation.ubiquitin.E3.DCX	DDB1A (UV-damaged DNA-binding protein 1A); DNA binding Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chro
MSGI1_73413	NODE_21032_length_175_cov_12.382857	0.1	0	13.2	13.8	0	0	-7	-4.8	stress.abiotic.light	DDB1A (UV-damaged DNA-binding protein 1A); DNA binding Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chro
MSGI1_68068	NODE_21040_length_187_cov_7.096257	0.3	0.4	17.8	0	0	-5.2	-5.9	0	not assigned.unknown	not assigned.unknown
MSGI1_86259	NODE_21042_length_152_cov_16.789474	4.8	4.7	38.1	21.9	0	0	-3	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_18705	NODE_21064_length_527_cov_20.874763	17.4	12.8	0	0	0	0	5.1	4.7	signalling.receptor kinases.leucine rich repeat VIII-2	leucine-rich repeat family protein / protein kinase family protein  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G56130.1); similar to leucine-rich repeat family protein / protein kinase fa
MSGI1_18705	NODE_21064_length_527_cov_20.874763	17.4	12.8	0	0	0	0	5.1	4.7	cell wall	leucine-rich repeat family protein / protein kinase family protein  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G56130.1); similar to leucine-rich repeat family protein / protein kinase fa
MSGI1_106878	NODE_21067_length_126_cov_20.666666	5.1	9.5	39.5	9.1	0	-2.1	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_113702	NODE_21069_length_100_cov_25.370001	2.4	1.5	39.1	0.3	0	-7	-4	0	minor CHO metabolism.raffinose family.raffinose synthases.known	"SIP1 (SEED IMBIBITION 1-LIKE); galactinol-sucrose galactosyltransferase/ hydrolase, hydrolyzing O-glycosyl compounds Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount o"
MSGI1_24455	NODE_21070_length_434_cov_11.391706	26	35.5	14.9	44.2	0	1.6	0	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase family protein  similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to lipoxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G72520.1); similar to LOX2 (LIPOXYGENASE 2) [Arabi"
MSGI1_70659	NODE_21077_length_181_cov_11.314918	65.3	51.3	20	34.9	0	0	1.7	0	cell.organisation	TUB3 (Tubulin beta-3); structural molecule encodes tubulin beta-2/beta-3 chain Identical to Tubulin beta-2/beta-3 chain (TUBB3) [Arabidopsis Thaliana] (GB:P29512); similar to TUB7 (tubulin beta-7 chain) [Arabidopsis thaliana] (TAIR:AT2G29550.1); similar
MSGI1_62713	NODE_21083_length_201_cov_7.213930	53.5	15.4	13.3	9.9	-1.8	0	2	0	cell wall	"glycosyl hydrolase family 17 protein  similar to hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT4G26830.1); similar to elicitor inducible beta-1,3-glucanase NtEIG-E76 [Nicotiana tabacum] (GB:BAB17320.1); similar to beta-1,3-gl"
MSGI1_38097	NODE_21095_length_306_cov_18.764706	4.8	3.4	36.9	10.2	0	-1.9	-2.9	0	secondary metabolism.flavonoids.anthocyanins	transferase family protein  similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G01210.1); similar to AER [Nicotiana tabacum] (GB:AAM73656.1); contains InterPro domain Transferase; (InterPro:IPR003480)
MSGI1_81833	NODE_21099_length_159_cov_5.327044	0.6	1	11.5	9.4	0	0	-4.3	0	not assigned.unknown	not assigned.unknown
MSGI1_113343	NODE_21102_length_103_cov_94.893204	8.1	27.3	10.1	24.9	1.8	0	0	0	transport.sulphate	"AST91 (SULFATE TRANSPORTER 91); sulfate transporter Encodes AST91 mRNA for sulfate transporter. Identical to Probable sulfate transporter 3.3 (AST91) (SULTR3;3) [Arabidopsis Thaliana] (GB:Q9SXS2;GB:O49307); similar to SULTR3,4 (SULTR3,4), sulfate transpo"
MSGI1_59384	NODE_21103_length_211_cov_5.156398	4.8	6.3	22.1	11.6	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_107852	NODE_2113_length_125_cov_140.240005	63.7	172.2	38.1	55.5	1.4	0	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_122081	NODE_21132_length_61_cov_166.491806	29.1	39	0.4	0	0	0	6.2	6.3	not assigned.unknown	not assigned.unknown
MSGI1_97999	NODE_21133_length_136_cov_6.411765	0	0	11.8	6.1	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_73879	NODE_21133_length_174_cov_10.103448	0	0	14.9	26.7	0	0	-4.9	-5.7	not assigned.unknown	not assigned.unknown
MSGI1_68473	NODE_21142_length_186_cov_40.247311	17.9	33.1	40.4	75	0	0	0	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_75302	NODE_21151_length_171_cov_10.175439	38.9	16.3	12.4	14.9	0	0	1.6	0	cell wall	GRF12 (GENERAL REGULATORY FACTOR 12); protein phosphorylated amino acid binding 14-3-3 protein GF14iota (grf12) Identical to 14-3-3-like protein GF14 iota (General regulatory factor 12) (GRF12) [Arabidopsis Thaliana] (GB:Q9C5W6;GB:Q9FZD3); similar to GRF
MSGI1_75302	NODE_21151_length_171_cov_10.175439	38.9	16.3	12.4	14.9	0	0	1.6	0	signalling.14-3-3 proteins	GRF12 (GENERAL REGULATORY FACTOR 12); protein phosphorylated amino acid binding 14-3-3 protein GF14iota (grf12) Identical to 14-3-3-like protein GF14 iota (General regulatory factor 12) (GRF12) [Arabidopsis Thaliana] (GB:Q9C5W6;GB:Q9FZD3); similar to GRF
MSGI1_62032	NODE_21156_length_203_cov_26.990149	14.6	11.4	0	0	0	0	4.9	4.5	not assigned.unknown	not assigned.unknown
MSGI1_66787	NODE_2116_length_190_cov_18.421053	0.5	0.2	43.1	4.6	0	-3.2	-6.4	0	not assigned.unknown	not assigned.unknown
MSGI1_104040	NODE_21162_length_129_cov_13.046512	12.7	12.4	1	1.8	0	0	3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_76827	NODE_21164_length_168_cov_58.500000	44.6	238.5	103	246.7	2.4	1.3	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_43133	NODE_21165_length_278_cov_20.223022	40	20	15.4	20.8	0	0	1.4	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_43133	NODE_21165_length_278_cov_20.223022	40	20	15.4	20.8	0	0	1.4	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_86258	NODE_21169_length_152_cov_68.151314	15.4	62.6	93.6	26.9	2	-1.8	-2.6	1.2	not assigned.unknown	not assigned.unknown
MSGI1_6157	NODE_21172_length_962_cov_20.623701	20.8	27.6	4	6.5	0	0	2.4	2.1	"misc.oxidases - copper, flavone etc."	"ARP protein (REF)  similar to oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT3G56460.1); similar to Alcohol dehydrogenase superfamily, zinc-containing; Short-chain dehydrogenase/reductase SDR [Medicago truncatula"
MSGI1_34543	NODE_21183_length_331_cov_8.522658	9.2	24.9	3.2	2.9	0	0	0	3.1	stress.abiotic.heat	HSP70 (heat shock protein 70); ATP binding  similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G
MSGI1_122079	NODE_21194_length_61_cov_24.360655	2.2	2	65.4	1.2	0	-5.8	-4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_45162	NODE_21198_length_268_cov_30.593283	5.1	23.5	13.1	15.5	2.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_26634	NODE_21204_length_406_cov_78.514778	52.9	57.7	119.6	62.5	0	0	-1.2	0	PS.lightreaction.photosystem I.PSI polypeptide subunits	"PSAE-2 (photosystem I subunit E-2) Encodes subunit E of photosystem I. Identical to Photosystem I reaction center subunit IV B, chloroplast precursor (PSI-E B) (PSAE2) [Arabidopsis Thaliana] (GB:Q9S714); similar to PSAE-1 (PSA E1 KNOCKOUT) [Arabidopsis t"
MSGI1_66378	NODE_21207_length_191_cov_8.235602	41.7	14.4	120.8	13.3	-1.5	-3.2	-1.5	0	stress.abiotic.cold	"COR413-PM1 (cold regulated 413 plasma membrane 1) encodes an alpha form of a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. similar to"
MSGI1_79520	NODE_21208_length_163_cov_21.865030	2.9	1.7	38.9	42.6	0	0	-3.7	-4.6	cell wall.pectin*esterases.misc	"pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT1G23200.1); similar to pectinesterase (EC 3.1.1.11) PECS-c2 - sweet orange (GB:T10494); contains InterPro domain Virulence factor, pectin lyase fold; ("
MSGI1_18305	NODE_21211_length_533_cov_32.669792	33.2	19.7	58.9	18.6	0	-1.7	0	0	misc.cytochrome P450	"CYP72A14 (cytochrome P450, family 72, subfamily A, polypeptide 14); oxygen binding putative cytochrome P450 similar to CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14690.1); similar t"
MSGI1_92536	NODE_21215_length_143_cov_9.867133	3.6	3.2	20.7	2.7	0	-2.9	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_76825	NODE_21217_length_168_cov_18.208334	81.8	53.9	20	45.4	0	1.2	2	0	not assigned.unknown	not assigned.unknown
MSGI1_64548	NODE_21222_length_196_cov_22.392857	31.7	25.1	5.1	10.7	0	0	2.6	0	RNA.processing.splicing	"SCL30a (SC35-like splicing factor 30a); RNA binding encodes an SC35-like splicing factor of 30 kD that is localized to the nuclear specks. similar to SR33 (SC35-like splicing factor 33), RNA binding [Arabidopsis thaliana] (TAIR:AT1G55310.2); similar to R"
MSGI1_104038	NODE_21227_length_129_cov_47.875969	29.8	20	4.6	2.4	0	0	2.7	3.1	not assigned.unknown	not assigned.unknown
MSGI1_40535	NODE_21235_length_292_cov_12.678082	6.4	5.1	38.6	2.1	0	-4.2	-2.6	0	signalling.receptor kinases.DUF 26	"protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23150.1); similar to CRK10 (CYSTEINE-RICH RLK10), kinase [Arabidopsis thaliana] (TAIR:AT4G23180.1); similar to CRK6 (CYSTEINE-RICH RLK 6), kinase [Ar"
MSGI1_76294	NODE_21238_length_169_cov_5.532545	0.6	0.5	18.4	5	0	0	-4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_34665	NODE_21238_length_330_cov_63.221210	10.3	35.7	62.1	7.5	1.8	-3	-2.6	2.3	protein.postranslational modification	"protein phosphatase 2C, putative / PP2C, putative  similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G30020.1); similar to protein phosphatase 2C [Medicago sativa] (GB:CAA72341.1); contains InterPro domain Prote"
MSGI1_84995	NODE_21239_length_154_cov_4.110390	0.1	0	4.5	10.7	0	0	0	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_24542	NODE_21242_length_433_cov_23.443419	3.5	8.1	31.2	5.8	0	-2.4	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_74347	NODE_21243_length_173_cov_75.670517	14.6	45.9	3.1	3.2	1.7	0	0	3.8	not assigned.unknown	not assigned.unknown
MSGI1_40144	NODE_21246_length_294_cov_45.217686	31.6	21.6	10.4	22.2	0	0	1.6	0	protein.folding	"chaperonin, putative  similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT5G16070.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96914.1); similar to Chaperonin complex component, TCP-1 zeta subunit (CCT6) (ISS) [Ostreococcus taur"
MSGI1_31991	NODE_21251_length_351_cov_35.572651	23.7	1.1	13.5	1.2	-4.4	-3.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_73411	NODE_21261_length_175_cov_6.085714	3.6	6.3	21.2	3.4	0	-2.6	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_20735	NODE_21266_length_489_cov_78.390594	63.1	28.5	18.9	39	-1.1	0	1.7	0	PS.calvin cyle.Rib5P Isomerase	ribose 5-phosphate isomerase-related  similar to ribose-5-phosphate isomerase [Arabidopsis thaliana] (TAIR:AT2G01290.1); similar to putative ribose-5-phosphate isomerase [Oryza sativa (japonica cultivar-group)] (GB:BAC83440.1); similar to Os07g0176900 [Or
MSGI1_20735	NODE_21266_length_489_cov_78.390594	63.1	28.5	18.9	39	-1.1	0	1.7	0	OPP.non-reductive PP.ribose 5-phosphate isomerase	ribose 5-phosphate isomerase-related  similar to ribose-5-phosphate isomerase [Arabidopsis thaliana] (TAIR:AT2G01290.1); similar to putative ribose-5-phosphate isomerase [Oryza sativa (japonica cultivar-group)] (GB:BAC83440.1); similar to Os07g0176900 [Or
MSGI1_68470	NODE_21267_length_186_cov_9.225806	26.7	6.9	9.2	6.3	-2	0	0	0	cell wall	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_68470	NODE_21267_length_186_cov_9.225806	26.7	6.9	9.2	6.3	-2	0	0	0	"misc.oxidases - copper, flavone etc."	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_101385	NODE_21272_length_132_cov_4.310606	0	0	8.6	10.7	0	0	0	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_12640	NODE_21277_length_669_cov_17.998505	22	6.2	4.2	5.9	0	0	2.4	0	"misc.gluco-, galacto- and mannosidases"	glycoside hydrolase family 2 protein  Identical to Mannosylglycoprotein endo-beta-mannosidase (EC 3.2.1.152) (Endo-beta- mannosidase) (AtEBM) [Contains: Mannosylglycoprotein endo-beta- mannosidase 31 kDa subunit; Mannosylglycoprotein endo-beta-mannosidas
MSGI1_12640	NODE_21277_length_669_cov_17.998505	22	6.2	4.2	5.9	0	0	2.4	0	cell wall.degradation.mannan-xylose-arabinose-fucose	glycoside hydrolase family 2 protein  Identical to Mannosylglycoprotein endo-beta-mannosidase (EC 3.2.1.152) (Endo-beta- mannosidase) (AtEBM) [Contains: Mannosylglycoprotein endo-beta- mannosidase 31 kDa subunit; Mannosylglycoprotein endo-beta-mannosidas
MSGI1_57546	NODE_21282_length_217_cov_10.732718	29.6	21	15.7	39.7	0	1.3	0	0	tetrapyrrole synthesis.divinyl chlorophyllide-a 8-vinyl-reductase	"DVR (PALE-GREEN AND CHLOROPHYLL B REDUCED 2); 3,8-divinyl protochlorophyllide a 8-vinyl reductase Encodes a protein with 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity. Mutants accumulate divinyl chlorophyll rather than monovinyl chlorophyl"
MSGI1_87615	NODE_21283_length_150_cov_15.553333	0	0.1	26.3	12.8	0	0	-5.7	-7	not assigned.unknown	not assigned.unknown
MSGI1_74346	NODE_21288_length_173_cov_28.352602	3.2	4.8	23.7	9.7	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_122071	NODE_21291_length_61_cov_34.491802	22.2	18.2	0	3.3	0	0	5.5	2.5	not assigned.unknown	not assigned.unknown
MSGI1_112552	NODE_21295_length_109_cov_43.825687	36.2	21.9	0	0	0	0	6.2	5.5	protein.synthesis.misc ribososomal protein	60S ribosomal protein L15 (RPL15B)  Identical to 60S ribosomal protein L15-2 (RPL15B) [Arabidopsis Thaliana] (GB:Q8VYF1;GB:O23582); Identical to 60S ribosomal protein L15-1 (RPL15A) [Arabidopsis Thaliana] (GB:O23515); similar to 60S ribosomal protein L15
MSGI1_39839	NODE_2130_length_296_cov_52.097973	34.9	3.6	14	1.8	-3.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_99583	NODE_21306_length_134_cov_9.589552	2.3	2.5	11.7	18.5	0	0	0	-2.9	not assigned.unknown	not assigned.unknown
MSGI1_83101	NODE_21308_length_157_cov_11.146497	48	34.2	10	15.2	0	0	2.3	0	cell wall.pectin*esterases.acetyl esterase	"pectinacetylesterase, putative  similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT5G26670.1); similar to Pectinacetylesterase [Medicago truncatula] (GB:ABD33181.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963"
MSGI1_86257	NODE_21309_length_152_cov_15.611842	19.5	14.5	2.3	3.3	0	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_122069	NODE_21309_length_61_cov_43.295082	0	0	22.3	50.2	0	1.2	-5.5	-6.6	hormone metabolism.auxin.signal transduction	ATPGP1 (ARABIDOPSIS THALIANA P GLYCOPROTEIN1); calmodulin binding Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR1.Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root.  E
MSGI1_122069	NODE_21309_length_61_cov_43.295082	0	0	22.3	50.2	0	1.2	-5.5	-6.6	transport.ABC transporters and multidrug resistance systems	ATPGP1 (ARABIDOPSIS THALIANA P GLYCOPROTEIN1); calmodulin binding Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR1.Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root.  E
MSGI1_122068	NODE_21310_length_61_cov_33.311474	13.4	68.9	9.6	14.8	2.4	0	0	2.2	cell wall.cellulose synthesis	"ATCSLA09 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 4); transferase, transferring glycosyl groups encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium"
MSGI1_83710	NODE_21314_length_156_cov_16.717949	19.8	1.8	17.3	10.6	-3.5	0	0	0	"misc.gluco-, galacto- and mannosidases"	"glycosyl hydrolase family 1 protein / beta-glucosidase, putative (YLS1)  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G44640.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G42260.1); s"
MSGI1_96397	NODE_2133_length_138_cov_125.710144	118.4	205.1	22.2	15.9	0	0	2.4	3.7	redox.ascorbate and glutathione	B5 #4 (cytochrome b5 family protein #4); heme binding / transition metal ion binding member of Cytochromes b5 Identical to Probable cytochrome b5 isoform 2 [Arabidopsis Thaliana] (GB:O48845); similar to ATB5-B (Cytochrome b5 B) [Arabidopsis thaliana] (TAI
MSGI1_82454	NODE_21332_length_158_cov_11.696202	12.6	16.3	66.4	26.4	0	-1.3	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_83709	NODE_21335_length_156_cov_6.820513	4.4	9.5	16.4	0.9	0	-4.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_56432	NODE_21337_length_221_cov_13.067873	3.2	4	20.7	7.8	0	0	-2.7	0	stress.biotic	PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. Identical to Hevein-like protein precursor (HE
MSGI1_112180	NODE_21343_length_112_cov_16.598215	13.8	20.6	0	0	0	0	4.8	5.4	not assigned.unknown	not assigned.unknown
MSGI1_61676	NODE_21346_length_204_cov_11.093137	2.5	4.5	26.4	15.5	0	0	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_77293	NODE_21354_length_167_cov_45.640720	37	126.1	14.1	27.1	1.8	0	1.4	2.2	RNA.regulation of transcription.unclassified	"MIF2 (MINI ZINC FINGER 2); DNA binding  similar to MIF1 (MINI ZINC FINGER 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G74660.1); similar to Os11g0128300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065634.1); similar to Z"
MSGI1_122065	NODE_21358_length_61_cov_68.327866	39.4	12.2	8.8	3.3	-1.7	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_113628	NODE_2136_length_101_cov_39.099010	18.3	8.3	2.4	5.3	0	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_117700	NODE_21360_length_65_cov_26.738462	10.3	13.9	34	12.4	0	0	-1.7	0	protein.postranslational modification	"CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7); calcium- and calmodulin-dependent protein kinase/ kinase calmodulin-domain protein kinase CDPK isoform 7 (CPK7) similar to CPK14 (calcium-dependent protein kinase 14), calcium- and calmodulin-dependent protein k"
MSGI1_117700	NODE_21360_length_65_cov_26.738462	10.3	13.9	34	12.4	0	0	-1.7	0	signalling.calcium	"CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7); calcium- and calmodulin-dependent protein kinase/ kinase calmodulin-domain protein kinase CDPK isoform 7 (CPK7) similar to CPK14 (calcium-dependent protein kinase 14), calcium- and calmodulin-dependent protein k"
MSGI1_122063	NODE_21372_length_61_cov_12.590164	6.5	6.7	27.9	4.9	0	-2.5	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_122062	NODE_21374_length_61_cov_22.295082	4.8	12.9	0	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_65623	NODE_21375_length_193_cov_12.326425	0.1	0	25.6	14	0	0	-8	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_105901	NODE_21397_length_127_cov_15.110236	8.9	7.2	31	15.2	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_18838	NODE_21397_length_525_cov_14.891429	4.7	3.3	41.6	2.3	0	-4.2	-3.1	0	nucleotide metabolism.synthesis.pyrimidine.CTP synthetase	"EMB2742 (EMBRYO DEFECTIVE 2742); CTP synthase  similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT1G30820.1); similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT2"
MSGI1_78923	NODE_21400_length_164_cov_11.152439	12.6	16.7	80.2	12.7	0	-2.7	-2.7	0	protein.degradation.ubiquitin	"UBQ13 (ubiquitin 13) polyubiquitin gene,Columbia ecotype revealed that the gene contained a 3.9-kb insertion in the coding region from mitochondrial DNA. Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9"
MSGI1_122060	NODE_21404_length_61_cov_76.672134	30.4	20	8.8	7	0	0	1.8	0	protein.degradation.ubiquitin.proteasom	PBB2 (20S proteasome beta subunit B 2); peptidase Encodes 20S proteasome beta subunit PBB2 (PBB2). Identical to Proteasome subunit beta type 7-B precursor (EC 3.4.25.1) (Proteasome subunit beta type 2) (20S proteasome beta subunit B-2) (Proteasome compon
MSGI1_79517	NODE_21405_length_163_cov_7.730062	9.6	1.5	18.9	3.4	0	-2.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_49303	NODE_21413_length_249_cov_5.566265	0	0	9.7	13.9	0	0	0	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_111127	NODE_21419_length_121_cov_120.975204	61.5	57.8	24.8	22.6	0	0	1.3	1.4	OPP.oxidative PP.6-phosphogluconate dehydrogenase	6-phosphogluconate dehydrogenase family protein  similar to 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT1G64190.1); similar to 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT5G41670.2); s
MSGI1_52974	NODE_21419_length_234_cov_52.337608	58.4	77.3	57.3	8.3	0	-2.8	0	3.2	DNA.repair	heavy-metal-associated domain-containing protein  similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G23760.1); similar to Unknown (protein for MGC:78286) [Mus musculus] (GB:AAH71252.1); contains InterPro domain He
MSGI1_100463	NODE_21435_length_133_cov_29.834587	12.9	12.1	123.9	31	0	-2	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_63454	NODE_21435_length_199_cov_13.552764	5	6	35.6	1.7	0	-4.4	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_3602	NODE_21441_length_1229_cov_22.735558	5.8	27.3	11	18.3	2.2	0	0	0	transport.sulphate	"SULTR3;4 (SULTR3;4); sulfate transporter Encodes sulfate transporter Sultr3;4. Identical to Probable sulfate transporter 3.4 (SULTR3;4) [Arabidopsis Thaliana] (GB:Q9LW86); similar to AST91 (SULFATE TRANSPORTER 91), sulfate transporter [Arabidopsis thalia"
MSGI1_3602	NODE_21441_length_1229_cov_22.735558	5.8	27.3	11	18.3	2.2	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_114998	NODE_21443_length_88_cov_64.204544	72.5	76.2	30.1	69.9	0	1.2	1.3	0	protein.synthesis.misc ribososomal protein	RPL34 (RIBOSOMAL PROTEIN L34); structural constituent of ribosome putative 60S ribosomal protein L34 Identical to 60S ribosomal protein L34-2 (RPL34B) [Arabidopsis Thaliana] (GB:Q9FE65); similar to 60S ribosomal protein L34 (RPL34A) [Arabidopsis thaliana]
MSGI1_101384	NODE_21451_length_132_cov_32.553032	12.4	26.1	40	39	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_104933	NODE_21452_length_128_cov_12.125000	0	0	23.6	5.8	0	0	-5.6	0	not assigned.unknown	not assigned.unknown
MSGI1_48848	NODE_21460_length_251_cov_5.880478	0	0	12.1	11.5	0	0	-4.6	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_37466	NODE_21461_length_310_cov_37.358063	37.8	32	14.9	10.4	0	0	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_70225	NODE_21463_length_182_cov_9.428572	31.1	3.9	12.6	8.2	-3	0	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	ELI3-1 (ELICITOR-ACTIVATED GENE 3); oxidoreductase/ zinc ion binding Encodes a putative mannitol dehydrogenase. Identical to Probable mannitol dehydrogenase 1 (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase 1) (ELI3-1) [Arabidopsis Thaliana] (GB:Q02
MSGI1_74344	NODE_21467_length_173_cov_14.242775	18	1.1	8.1	0.4	-4	0	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	auxin-responsive family protein  similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G34810.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12778.1); contains InterPro domain Auxin responsive SAUR protein; (I
MSGI1_57545	NODE_2148_length_217_cov_57.709679	0	0	216.2	88	0	-1.3	-8.8	-7.5	not assigned.unknown	not assigned.unknown
MSGI1_15866	NODE_21482_length_581_cov_19.549053	18	8.7	30.8	9.4	0	-1.7	0	0	misc.glutathione S transferases	ATGSTU18 (GLUTATHIONE S-TRANSFERASE 29); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU17/ERD9/GST30/GST30B (EARLY-RESPONSIVE TO DEHYDRATI
MSGI1_108857	NODE_21492_length_124_cov_6.395161	0	0	3.4	13	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_53490	NODE_21497_length_232_cov_25.642241	4.1	4.9	42.4	0.5	0	-6.4	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_97997	NODE_21499_length_136_cov_14.272058	15.2	1.2	2	0.5	-3.7	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_84346	NODE_21500_length_155_cov_4.812903	0.7	0.8	7.9	11.9	0	0	0	-3.9	not assigned.unknown	not assigned.unknown
MSGI1_56689	NODE_21503_length_220_cov_29.372726	12.1	19.4	2.6	3.9	0	0	0	2.3	not assigned.unknown	not assigned.unknown
MSGI1_39630	NODE_21506_length_297_cov_64.309761	1.1	0.7	153.2	1.7	0	-6.5	-7.1	0	not assigned.unknown	not assigned.unknown
MSGI1_8050	NODE_21514_length_854_cov_32.489460	32.7	35.5	4.7	7.3	0	0	2.8	2.3	not assigned.unknown	not assigned.unknown
MSGI1_115499	NODE_21516_length_83_cov_53.602409	21	48.8	19.3	46.1	1.2	1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_70655	NODE_21517_length_181_cov_10.110497	4	5.4	22.4	7.4	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_103134	NODE_21520_length_130_cov_7.838461	0	0	16	8.7	0	0	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_65250	NODE_21526_length_194_cov_17.314432	8.3	17.5	10.1	1.4	0	0	0	3.6	not assigned.unknown	not assigned.unknown
MSGI1_71517	NODE_21527_length_179_cov_11.184358	2.3	1.7	18	8.2	0	0	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_16128	NODE_2153_length_575_cov_132.798264	135.8	92.6	61.1	140.8	0	1.2	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_45632	NODE_21536_length_266_cov_31.135338	13.8	28.2	99	27.2	0	-1.9	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_122050	NODE_21538_length_61_cov_38.377048	22.8	26.4	0	2.9	0	0	5.5	3.2	not assigned.unknown	not assigned.unknown
MSGI1_88977	NODE_21541_length_148_cov_43.810810	43.9	32.7	2.3	1.4	0	0	4.3	4.5	not assigned.unknown	not assigned.unknown
MSGI1_60626	NODE_21546_length_207_cov_12.444445	14.9	23.6	3.1	4.1	0	0	0	2.5	transport.ABC transporters and multidrug resistance systems	ATGCN5 (Arabidopsis thaliana general control non-repressible 5) member of GCN subfamily similar to ATGCN2 (Arabidopsis thaliana general control non-repressible 2) [Arabidopsis thaliana] (TAIR:AT5G09930.1); similar to 80C09_14 [Brassica rapa subsp. pekine
MSGI1_81832	NODE_21566_length_159_cov_5.547170	24.1	11.9	5.7	12.1	0	0	2.1	0	nucleotide metabolism.deoxynucleotide metabolism.ribonucleoside-diphosphate reductase	"R1/RIBONUCLEOTIDE REDUCTASE, REDUCTASE PROTEIN R1; ribonucleoside-diphosphate reductase encodes large subunit of ribonucleotide reductase involved in the production of deoxyribonucleoside triphosphates (dNTPs) for DNA replication and repair Identical to"
MSGI1_51671	NODE_21572_length_239_cov_15.338912	2.1	3.6	31.3	7.9	0	-2	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_42003	NODE_21572_length_284_cov_6.609155	6.8	18.9	11	3.2	0	0	0	2.6	not assigned.unknown	not assigned.unknown
MSGI1_84994	NODE_21575_length_154_cov_13.785714	15	1.7	0	0	-3.1	0	4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_95611	NODE_21579_length_139_cov_11.913669	0.7	6.5	22.8	1.8	0	-3.7	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_113342	NODE_21584_length_103_cov_11.980582	10.1	21.4	47.6	65.4	0	0	-2.2	-1.6	misc.glutathione S transferases	ATGSTF10 (EARLY DEHYDRATION-INDUCED 13); glutathione transferase early dehydration-induced gene ERD13 homologous to tobacco and maize glutathione S-transferases.  Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention accor
MSGI1_96394	NODE_21584_length_138_cov_16.797102	9.5	15.2	0.7	2	0	0	0	2.9	not assigned.unknown	not assigned.unknown
MSGI1_80120	NODE_21587_length_162_cov_11.061728	7.9	23.4	37.3	22.1	0	0	-2.2	0	stress.abiotic	ATOSM34 (OSMOTIN 34) osmotin-like protein Identical to Osmotin-like protein OSM34 precursor (OSM34) [Arabidopsis Thaliana] (GB:P50700;GB:Q9T0D2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75050.1); similar to osmotin-like protein I [Gos
MSGI1_80717	NODE_21589_length_161_cov_8.000000	5.7	15.6	2.6	19.9	0	2.9	0	0	RNA.regulation of transcription.C2H2 zinc finger family	"STY2 (STYLISH 2) A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in functi"
MSGI1_17234	NODE_21591_length_553_cov_19.775768	0.4	1.2	20.8	32.4	0	0	-5.7	-4.8	misc.UDP glucosyl and glucoronyl transferases	"UGT73B1 (UDP-glucosyl transferase 73B1); UDP-glycosyltransferase/ abscisic acid glucosyltransferase  similar to UGT73B2, UDP-glucosyltransferase/ UDP-glycosyltransferase/ flavonol 3-O-glucosyltransferase [Arabidopsis thaliana] (TAIR:AT4G34135.1); similar"
MSGI1_101383	NODE_2160_length_132_cov_8.128788	2.4	9.1	11.1	31.2	0	0	0	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_42191	NODE_21603_length_283_cov_60.272083	30.7	24.3	88.3	17.3	0	-2.4	-1.5	0	signalling.phosphinositides.phosphoinositide phospholipase C	"ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phosp"
MSGI1_42191	NODE_21603_length_283_cov_60.272083	30.7	24.3	88.3	17.3	0	-2.4	-1.5	0	lipid metabolism.lipid degradation.lysophospholipases.phosphoinositide phospholipase C	"ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phosp"
MSGI1_116416	NODE_21609_length_75_cov_71.040001	2.3	2.4	35.5	1.8	0	-4.3	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_54832	NODE_21615_length_227_cov_20.004406	3.5	4	20.4	5.7	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_97995	NODE_21616_length_136_cov_29.279411	14.3	12.9	30.1	3.3	0	-3.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_97994	NODE_21632_length_136_cov_9.066176	0	0	8.4	17.8	0	0	0	-5.2	DNA.synthesis/chromatin structure	chromatin protein family  similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G67320.1); similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G16940.1); similar to Os02g0759800 [Oryza sativa (japonic
MSGI1_98759	NODE_21655_length_135_cov_7.962963	0.1	0.1	16.4	1	0	-4	-7.4	0	not assigned.unknown	not assigned.unknown
MSGI1_52972	NODE_21658_length_234_cov_11.888889	13.9	13.1	38.5	15.8	0	0	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_19832	NODE_21662_length_508_cov_14.053149	14.4	40.1	10.3	5.4	1.5	0	0	2.9	not assigned.unknown	not assigned.unknown
MSGI1_113050	NODE_21665_length_105_cov_46.514286	25.7	18.4	32.6	6.4	0	-2.3	0	0	secondary metabolism.isoprenoids.carotenoids.phytoene synthase	"PSY (PHYTOENE SYNTHASE); geranylgeranyl-diphosphate geranylgeranyltransferase Encodes phytoene synthase. Identical to Phytoene synthase, chloroplast precursor (EC 2.5.1.-) (PSY1) [Arabidopsis Thaliana] (GB:P37271;GB:O22375;GB:Q8LE86); similar to phytoene"
MSGI1_21911	NODE_21669_length_471_cov_13.819533	9.7	44.9	17.5	26.5	2.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_113341	NODE_21675_length_103_cov_65.368935	65.2	11	1.2	3.1	-2.6	0	5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_102203	NODE_21678_length_131_cov_26.916031	14.5	20.1	47.5	11	0	-2.1	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_57543	NODE_21681_length_217_cov_19.294931	21.6	16	0.2	0	0	0	6.8	5	protein.postranslational modification	PDF1 (65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A); protein phosphatase type 2A regulator one of three genes encoding the protein phosphatase 2A regulatory subunit Identical to Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A b
MSGI1_34663	NODE_21694_length_330_cov_8.400000	0	0	10.4	35.4	0	1.8	0	-6.1	not assigned.unknown	not assigned.unknown
MSGI1_11045	NODE_21711_length_722_cov_10.620499	10.2	25.3	32.2	26.4	0	0	-1.7	0	protein.degradation	"peptidase S41 family protein  similar to C-terminal processing protease, putative [Arabidopsis thaliana] (TAIR:AT4G17740.2); similar to carboxyl-terminal processing protease [Nostoc sp. PCC 7120] (GB:NP_487460.1); similar to Os06g0318600 [Oryza sativa (j"
MSGI1_16380	NODE_21718_length_570_cov_11.231579	10.2	20.9	4.4	19.8	0	2.2	0	0	RNA.regulation of transcription.TCP transcription factor family	"TCP family transcription factor, putative  similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G72010.1); similar to TCP transcription factor [Medicago truncatula] (GB:ABE87744.1); contains InterPro domain TCP transcripti"
MSGI1_16380	NODE_21718_length_570_cov_11.231579	10.2	20.9	4.4	19.8	0	2.2	0	0	hormone metabolism.auxin.signal transduction	"TCP family transcription factor, putative  similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G72010.1); similar to TCP transcription factor [Medicago truncatula] (GB:ABE87744.1); contains InterPro domain TCP transcripti"
MSGI1_122042	NODE_21719_length_61_cov_26.803278	20.5	25	16.4	52.3	0	1.7	0	0	signalling.light	SPA4 (SPA1-RELATED 4); signal transducer Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4).  SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repea
MSGI1_113340	NODE_21720_length_103_cov_13.961165	4.9	7.1	26.2	24.9	0	0	-2.4	0	amino acid metabolism.degradation.branched-chain group.shared	"alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative  Identical to Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial precursor (EC 2.6.1.44) (Beta-alanine-pyruvate aminotransferas"
MSGI1_113340	NODE_21720_length_103_cov_13.961165	4.9	7.1	26.2	24.9	0	0	-2.4	0	amino acid metabolism.synthesis.central amino acid metabolism.alanine.alanine-glyoxylate aminotransferase	"alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative  Identical to Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial precursor (EC 2.6.1.44) (Beta-alanine-pyruvate aminotransferas"
MSGI1_86960	NODE_21720_length_151_cov_30.370861	41.6	11	10.3	9.9	-1.9	0	2	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_53990	NODE_21724_length_230_cov_11.113044	0	0	11.5	21.2	0	0	-4.5	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_55902	NODE_21725_length_223_cov_67.672646	79.5	42.9	30.3	31.2	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_97992	NODE_21732_length_136_cov_12.867647	11.1	10	0.2	0	0	0	5.8	0	signalling.calcium	"IQD10 (IQ-domain 10); calmodulin binding  similar to IQD9 (IQ-domain 9), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G33990.1); similar to Os06g0155300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056849.1); similar to IQ calmodulin-binding"
MSGI1_49049	NODE_21734_length_250_cov_33.231998	18.1	20.1	5.6	3.1	0	0	0	2.7	not assigned.unknown	not assigned.unknown
MSGI1_16824	NODE_21734_length_561_cov_25.586452	16.6	16.2	0.3	0.3	0	0	5.8	5.8	not assigned.unknown	not assigned.unknown
MSGI1_122040	NODE_21741_length_61_cov_46.196720	42.1	14.4	7.6	10.7	-1.5	0	2.5	0	cell wall	SLP3 (Subtilisin-like serine protease 3); subtilase Encodes a novel subtilisin-like serine protease. similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G30020.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530
MSGI1_122040	NODE_21741_length_61_cov_46.196720	42.1	14.4	7.6	10.7	-1.5	0	2.5	0	protein.degradation.subtilases	SLP3 (Subtilisin-like serine protease 3); subtilase Encodes a novel subtilisin-like serine protease. similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G30020.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530
MSGI1_122039	NODE_21743_length_61_cov_36.016392	39.9	6.7	5.2	7	-2.6	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_22946	NODE_21744_length_457_cov_7.951860	2.8	5.1	6.3	33.4	0	2.4	0	-2.7	major CHO metabolism.synthesis.starch.AGPase	"APL3 (large subunit of AGP 3) Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isof"
MSGI1_122038	NODE_21745_length_61_cov_66.295082	28.5	30.6	86.2	30.1	0	-1.5	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_91074	NODE_21746_length_145_cov_15.855172	4.1	3.5	21.5	11.7	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_51926	NODE_21747_length_238_cov_15.504202	18.8	0.1	2.3	4.5	-7.6	0	3	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_50689	NODE_21753_length_243_cov_7.654321	0.1	0.1	11.5	6.6	0	0	-6.8	0	not assigned.unknown	not assigned.unknown
MSGI1_52971	NODE_21758_length_234_cov_7.286325	2.3	1.3	15.5	19.5	0	0	0	-3.9	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G27180.1); similar to TIR-NBS disease resistance-like protein [Populus trichocarpa] (GB:ABB82029"
MSGI1_51391	NODE_21764_length_240_cov_6.233333	11.7	6.7	49.7	2	0	-4.6	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_49302	NODE_21765_length_249_cov_18.626507	1.8	2.3	22.5	15.3	0	0	-3.6	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_49302	NODE_21765_length_249_cov_18.626507	1.8	2.3	22.5	15.3	0	0	-3.6	0	secondary metabolism.flavonoids.flavonols	"SRG1 (SENESCENCE-RELATED GENE 1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors Encodes a novel member of the Fe(II"
MSGI1_38252	NODE_21766_length_305_cov_20.160656	10.8	14.2	59.9	16.1	0	-1.9	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_98758	NODE_21772_length_135_cov_11.785185	0.7	0.9	39.9	1.5	0	-4.7	-5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_74342	NODE_21791_length_173_cov_8.843930	25.6	5	11	6	-2.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_51670	NODE_21794_length_239_cov_12.648536	1.3	2.6	30.3	7.7	0	-2	-4.5	0	signalling.in sugar and nutrient physiology	"photoassimilate-responsive protein-related  similar to photoassimilate-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT5G52390.1); similar to NtEIG-E80 [Nicotiana tabacum] (GB:BAB16427.1); contains InterPro domain PAR1; (InterPro:IPR009489)"
MSGI1_73407	NODE_21795_length_175_cov_33.182858	12.9	16.3	73.2	9.8	0	-2.9	-2.5	0	protein.postranslational modification	"protein phosphatase 2C, putative / PP2C, putative  similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G29380.1); similar to protein phosphatase 2C [Nicotiana tabacum] (GB:CAC10358.1); contains InterPro domain Pro"
MSGI1_33425	NODE_21795_length_339_cov_16.312685	0.7	1.4	20.1	24	0	0	-4.8	-4.1	not assigned.unknown	not assigned.unknown
MSGI1_36277	NODE_21802_length_318_cov_25.094339	20.4	16.8	3.7	12.4	0	0	2.5	0	cell wall.cell wall proteins	extensin family protein  similar to 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G12430.1); similar to Extensin-like re (GB:ABD65126.1); contains InterPro domain 3&apos; (InterPro:IPR002562); contains InterPro domain Polynucleo
MSGI1_108853	NODE_21803_length_124_cov_18.137096	16.8	21.9	149.8	41.4	0	-1.9	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_122035	NODE_21805_length_61_cov_18.983606	11.2	9.5	0.4	0	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_38095	NODE_21812_length_306_cov_6.307189	0.1	0.1	16.8	7.6	0	0	-7.4	0	cell. vesicle transport	"SYP131 (syntaxin 131); t-SNARE member of SYP13 Gene Family Identical to Putative syntaxin-131 (AtSYP131) (SYP131) [Arabidopsis Thaliana] (GB:Q9SRV7); similar to SYP132 (syntaxin 132), t-SNARE [Arabidopsis thaliana] (TAIR:AT5G08080.1); similar to syntaxin"
MSGI1_61675	NODE_21814_length_204_cov_14.495098	0.1	0.1	15.4	35	0	0	-7.3	-8.5	not assigned.unknown	not assigned.unknown
MSGI1_107850	NODE_21826_length_125_cov_148.815994	62.1	21.3	0.3	0	-1.5	0	7.7	5.4	not assigned.unknown	not assigned.unknown
MSGI1_122032	NODE_2183_length_61_cov_32.590164	22.4	25.2	5.2	9.1	0	0	2.1	0	transport.ABC transporters and multidrug resistance systems	ATPGP1 (ARABIDOPSIS THALIANA P GLYCOPROTEIN1); calmodulin binding Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR1.Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root.  E
MSGI1_122032	NODE_2183_length_61_cov_32.590164	22.4	25.2	5.2	9.1	0	0	2.1	0	hormone metabolism.auxin.signal transduction	ATPGP1 (ARABIDOPSIS THALIANA P GLYCOPROTEIN1); calmodulin binding Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR1.Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root.  E
MSGI1_101379	NODE_21834_length_132_cov_19.969696	4.7	3.2	38.2	38.4	0	0	-3	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_41810	NODE_21838_length_285_cov_5.943860	3.7	20.5	7	20.4	2.5	0	0	0	misc.cytochrome P450	CYP78A9 (CYTOCHROME P450 78A9); oxygen binding Encodes a cytochrome p450 monooxygenase.  Overexpression of this gene allows fruit growth independently of fertilization.  The gene is normally expressed only in floral organs(during the Arabidopsis stage 14
MSGI1_24541	NODE_21839_length_433_cov_7.969977	0	0	13.7	8.8	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_98756	NODE_2185_length_135_cov_51.748150	1	4.1	46.6	6.9	0	-2.8	-5.5	0	not assigned.unknown	not assigned.unknown
MSGI1_10577	NODE_2185_length_739_cov_25.646820	17.5	24.7	69.8	43.4	0	0	-2	0	secondary metabolism.N misc.alkaloid-like	"FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to EDA28/MEE23 (embryo sac development arrest 28, maternal effect embryo arrest 23), electron carrier [Arabidopsis"
MSGI1_10577	NODE_2185_length_739_cov_25.646820	17.5	24.7	69.8	43.4	0	0	-2	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to EDA28/MEE23 (embryo sac development arrest 28, maternal effect embryo arrest 23), electron carrier [Arabidopsis"
MSGI1_63451	NODE_21850_length_199_cov_7.608040	0	0	7.8	12.3	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_60963	NODE_21853_length_206_cov_7.242718	0.7	0.7	14.2	13.5	0	0	-4.3	-4.3	protein.degradation	PIP (proline iminopeptidase); prolyl aminopeptidase encodes proline iminopeptidase Identical to Proline iminopeptidase (EC 3.4.11.5) (PIP) (Prolyl aminopeptidase) (PAP) (PIP) [Arabidopsis Thaliana] (GB:P93732;GB:Q9SKJ3); similar to proline iminopeptidase
MSGI1_64168	NODE_21855_length_197_cov_9.238579	0.6	10.1	18.4	22.3	0	0	-4.9	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_64168	NODE_21855_length_197_cov_9.238579	0.6	10.1	18.4	22.3	0	0	-4.9	0	development.unspecified	nodulin MtN3 family protein  similar to nodulin MtN3 family protein [Arabidopsis thaliana] (TAIR:AT4G10850.1); similar to Os05g0426000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055599.1); similar to senescence-associated protein-like [Oryza sativ
MSGI1_55066	NODE_21855_length_226_cov_5.623894	0	0	12.9	5.2	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_122030	NODE_21857_length_61_cov_22.885246	14.2	11.1	0	0	0	0	4.8	4.5	not assigned.unknown	not assigned.unknown
MSGI1_26014	NODE_21859_length_414_cov_48.388889	20.1	19.4	0.1	0	0	0	7.7	5.3	not assigned.unknown	not assigned.unknown
MSGI1_112785	NODE_21861_length_107_cov_145.719620	67.1	105.3	46.2	101.9	0	1.1	0	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 54 precursor (EC 1.11.1.7) (Atperox P54) (ATP29a) (PER54) [Arabidopsis Thaliana] (GB:Q9FG34;GB:P93729); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G06720.1); similar to Peroxidase A2 (GB:"
MSGI1_34077	NODE_21868_length_334_cov_12.799401	48.9	21.8	6.9	6.8	0	0	2.8	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_34077	NODE_21868_length_334_cov_12.799401	48.9	21.8	6.9	6.8	0	0	2.8	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_122029	NODE_21872_length_61_cov_35.819672	19.6	18	0	0	0	0	5.3	5.2	not assigned.unknown	not assigned.unknown
MSGI1_84340	NODE_21883_length_155_cov_11.638710	11.9	12	0.7	4.2	0	0	4.1	0	RNA.transcription	"ATRPABC24.3 (Arabidopsis thaliana RNA polymerase I, II and III 24.3 kDa subunit); DNA binding / DNA-directed RNA polymerase RNA polymerase I, II and III 24.3 kDa subunit (AtRPABC24.3) similar to eukaryotic rpb5 RNA polymerase subunit family protein ["
MSGI1_100458	NODE_21884_length_133_cov_6.721805	7.4	13.2	40.1	21.7	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_5119	NODE_21886_length_1047_cov_32.207260	30.6	13	4.7	3.3	0	0	2.7	0	cell wall	PIP1;5/PIP1D (plasma membrane intrinsic protein 1;5); water channel  Identical to Probable aquaporin PIP1.5 (Plasma membrane intrinsic protein 1d) (PIP1d) (PIP1.5) [Arabidopsis Thaliana] (GB:Q8LAA6;GB:O81736); similar to TMP-C (plasma membrane intrinsic
MSGI1_5119	NODE_21886_length_1047_cov_32.207260	30.6	13	4.7	3.3	0	0	2.7	0	transport.Major Intrinsic Proteins.PIP	PIP1;5/PIP1D (plasma membrane intrinsic protein 1;5); water channel  Identical to Probable aquaporin PIP1.5 (Plasma membrane intrinsic protein 1d) (PIP1d) (PIP1.5) [Arabidopsis Thaliana] (GB:Q8LAA6;GB:O81736); similar to TMP-C (plasma membrane intrinsic
MSGI1_5119	NODE_21886_length_1047_cov_32.207260	30.6	13	4.7	3.3	0	0	2.7	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_122028	NODE_21887_length_61_cov_10.524590	21.6	32	4.8	11.1	0	0	2.2	0	protein.synthesis.initiation	"ZLL (ZWILLE) Translation initiation factor. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Identical t"
MSGI1_122027	NODE_21892_length_61_cov_40.147541	8.2	8.6	43.9	11.5	0	-1.9	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_90358	NODE_21899_length_146_cov_19.582191	2.3	3.5	19.3	3.6	0	-2.4	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_51925	NODE_21900_length_238_cov_7.525210	1	6.4	15.9	3.7	0	0	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_94085	NODE_21902_length_141_cov_8.177305	34.5	5.5	6.7	7.7	-2.6	0	2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_63103	NODE_21905_length_200_cov_9.885000	13.4	0.2	5	3.1	-6.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_44696	NODE_21908_length_270_cov_73.962959	42	11.4	36.6	17.2	-1.9	0	0	0	secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA reductase	"HMG1 (3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE) Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in l"
MSGI1_44543	NODE_21910_length_271_cov_12.073801	1.2	14.1	5.4	1.2	3.6	0	0	3.6	not assigned.unknown	not assigned.unknown
MSGI1_103128	NODE_21926_length_130_cov_9.784616	11.4	0.1	6.9	0.3	-6.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_20491	NODE_21928_length_494_cov_44.400810	38.8	32	15.1	21.2	0	0	1.4	0	protein.folding	ATTCP-1 (Arabidopsis thaliana T-complex protein 1 alpha subunit); ATP binding / protein binding / unfolded protein binding Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). Identical to T-complex protein
MSGI1_50930	NODE_21931_length_242_cov_10.148761	7.2	11.7	0.2	0	0	0	0	4.5	cell wall	protein kinase family protein  similar to serine/threonine protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G66880.1); similar to wall-associated kinase 4-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82478.1); similar to Os01g0136400
MSGI1_50930	NODE_21931_length_242_cov_10.148761	7.2	11.7	0.2	0	0	0	0	4.5	signalling.receptor kinases.wheat LRK10 like	protein kinase family protein  similar to serine/threonine protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G66880.1); similar to wall-associated kinase 4-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82478.1); similar to Os01g0136400
MSGI1_72512	NODE_21933_length_177_cov_7.463277	6.9	11.3	3.7	0.6	0	0	0	4.2	protein.degradation.AAA type	AATP1 (AAA-ATPASE 1); ATP binding / ATPase  similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT3G28580.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE78645.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003
MSGI1_53184	NODE_2194_length_233_cov_43.789700	23.1	1.9	9.6	3.1	-3.6	0	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	ELI3-1 (ELICITOR-ACTIVATED GENE 3); oxidoreductase/ zinc ion binding Encodes a putative mannitol dehydrogenase. Identical to Probable mannitol dehydrogenase 1 (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase 1) (ELI3-1) [Arabidopsis Thaliana] (GB:Q02
MSGI1_103127	NODE_21940_length_130_cov_22.292307	2.6	22.5	23.9	8.1	3.1	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_30943	NODE_21941_length_360_cov_7.377778	0.8	0.5	20	2.7	0	-2.9	-4.6	0	"misc.oxidases - copper, flavone etc."	"monooxygenase, putative (MO2)  similar to monooxygenase, putative (MO3) [Arabidopsis thaliana] (TAIR:AT5G05320.1); similar to monooxygenase [Solanum tuberosum] (GB:BAC23045.1); similar to Os03g0154100 [Oryza sativa (japonica cultivar-group)] (GB:NP_00104"
MSGI1_122024	NODE_21942_length_61_cov_79.606560	14.4	24.5	11.6	37.9	0	1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_11702	NODE_21944_length_700_cov_21.022858	3	3.5	25.2	2.8	0	-3.2	-3.1	0	development.unspecified	caleosin-related family protein  similar to caleosin-related family protein [Arabidopsis thaliana] (TAIR:AT1G70670.1); similar to Os06g0254700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057304.1); similar to putative ABA-induced protein [Cynodon d
MSGI1_57542	NODE_21947_length_217_cov_14.543778	0.2	0.6	40	0	0	-6.3	-7.6	0	not assigned.unknown	not assigned.unknown
MSGI1_42406	NODE_21950_length_282_cov_158.620575	38.7	25.4	14.4	16.3	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_16575	NODE_21951_length_566_cov_22.881626	13.5	4.7	31.7	8.3	0	-1.9	0	0	transport.peptides and oligopeptides	"proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G16180.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32296.1); sim"
MSGI1_72511	NODE_21962_length_177_cov_24.672316	6	11.1	36.2	31.9	0	0	-2.6	0	secondary metabolism.phenylpropanoids	isochorismatase hydrolase family protein  similar to hypothetical protein [Plantago major] (GB:CAH59421.1); contains InterPro domain Isochorismatase hydrolase; (InterPro:IPR000868)
MSGI1_109841	NODE_21967_length_123_cov_3.056911	0	0	6.3	15.5	0	0	0	-5	not assigned.unknown	not assigned.unknown
MSGI1_94840	NODE_21969_length_140_cov_13.035714	2.9	4.9	25.4	3.5	0	-2.9	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_10011	NODE_21969_length_761_cov_15.532194	4.8	12.5	0.7	0.5	0	0	0	4.6	RNA.regulation of transcription.WRKY domain transcription factor family	TTR1 (WRKY domain family protein 16); transcription factor Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. Identical to Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16)
MSGI1_10011	NODE_21969_length_761_cov_15.532194	4.8	12.5	0.7	0.5	0	0	0	4.6	stress.biotic	"ATP binding / protein binding / transmembrane receptor  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G09430.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thalia"
MSGI1_101374	NODE_21980_length_132_cov_6.356061	0.9	1.1	14.1	1.8	0	0	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_19241	NODE_21982_length_519_cov_22.358381	17	6.9	0.4	0.4	0	0	5.4	0	not assigned.unknown	not assigned.unknown
MSGI1_60018	NODE_21984_length_209_cov_85.645935	33.4	28.2	8.1	17.4	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_73874	NODE_21987_length_174_cov_144.574707	172.4	110.2	84.7	159	0	0	1	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L7A (RPL7aA)  Identical to 60S ribosomal protein L7a-1 (RPL7AA) [Arabidopsis Thaliana] (GB:P49692;GB:O22250); similar to 60S ribosomal protein L7A (RPL7aB) [Arabidopsis thaliana] (TAIR:AT3G62870.1); similar to 60S ribosomal protein L
MSGI1_5734	NODE_2199_length_991_cov_15.130172	14.8	14.5	0	0	0	0	4.9	4.9	not assigned.unknown	not assigned.unknown
MSGI1_81830	NODE_22003_length_159_cov_12.490566	13.7	4.4	0	0	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_99572	NODE_2201_length_134_cov_25.097015	23.6	14	5.7	4.1	0	0	2	0	minor CHO metabolism.others	aldose 1-epimerase family protein  similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT3G47800.1); similar to Galactose mutarotase-like [Medicago truncatula] (GB:ABE90391.1); contains InterPro domain Galactose mutarotase-like; (Int
MSGI1_19047	NODE_22011_length_522_cov_25.785440	19.8	17.1	0	0	0	0	5.3	5.1	not assigned.unknown	not assigned.unknown
MSGI1_106870	NODE_22015_length_126_cov_18.246031	16.1	74.8	40.5	47.4	2.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_57231	NODE_22017_length_218_cov_9.977064	53.4	31.1	18.3	35	0	0	1.5	0	lipid metabolism.FA synthesis and FA elongation.acyl-CoA binding protein	"ACBP5 (ACYL-COA BINDING PROTEIN 5, ACYL-COA-BINDING DOMAIN 5); acyl-CoA binding Acyl-CoA binding protein with high affinity for   oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport. similar to ACBP4 (ACYL-COA BINDING PROTEIN 4, A"
MSGI1_122021	NODE_22018_length_61_cov_28.327869	0	0	10.8	20.2	0	0	0	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_122019	NODE_22022_length_61_cov_27.032787	16.8	17.4	0	0.4	0	0	5.1	5.4	DNA.unspecified	"transporter  similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT4G39170.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE85412.1);"
MSGI1_122019	NODE_22022_length_61_cov_27.032787	16.8	17.4	0	0.4	0	0	5.1	5.4	transport.misc	"transporter  similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT4G39170.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE85412.1);"
MSGI1_97989	NODE_22038_length_136_cov_6.007353	0	0	11.6	21.6	0	0	-4.5	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_109840	NODE_22040_length_123_cov_113.853661	90.3	62.4	30.3	65.9	0	1.1	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_78917	NODE_22042_length_164_cov_10.506098	10.4	33.9	5.6	8.9	1.7	0	0	1.9	"RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family"	LOB domain protein 41 / lateral organ boundaries domain protein 41 (LBD41)  Identical to LOB domain-containing protein 41 (LBD41) [Arabidopsis Thaliana] (GB:Q9M886); similar to LOB domain protein 40 / lateral organ boundaries domain protein 40 (LBD40) [A
MSGI1_50686	NODE_22049_length_243_cov_82.320984	47.2	19	24.2	17.3	-1.3	0	0	0	transport.porins	"porin, putative  similar to porin, putative [Arabidopsis thaliana] (TAIR:AT3G49920.1); similar to porin-like protein [Brassica napus] (GB:AAW22622.1); contains InterPro domain Porin, eukaryotic type; (InterPro:IPR001925)"
MSGI1_105894	NODE_22052_length_127_cov_45.031498	77.9	17.5	0.5	0.3	-2.2	0	7.3	5.9	not assigned.unknown	not assigned.unknown
MSGI1_122017	NODE_22058_length_61_cov_160.950821	100.2	24.6	0	0	-2	0	7.6	5.6	not assigned.unknown	not assigned.unknown
MSGI1_8218	NODE_22063_length_846_cov_23.970449	26.6	7.3	6.5	5.5	-1.9	0	2	0	Biodegradation of Xenobiotics	"glyoxal oxidase-related  similar to glyoxal oxidase-related [Arabidopsis thaliana] (TAIR:AT1G75620.1); similar to glyoxal oxidase [Vitis pseudoreticulata] (GB:ABA42922.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contain"
MSGI1_112963	NODE_22068_length_106_cov_12.924528	1.8	1.4	17.8	7.5	0	0	-3.3	0	amino acid metabolism.synthesis.glutamate family.proline.delta 1-pyrroline-5-carboxylate synthetase	P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1) encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions b
MSGI1_64882	NODE_22073_length_195_cov_10.333333	10.9	8	21.4	31.1	0	0	0	-2	not assigned.unknown	not assigned.unknown
MSGI1_52410	NODE_22080_length_236_cov_11.067797	10.9	46.9	12.6	43.7	2.1	1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_23955	NODE_22082_length_441_cov_16.564627	22.1	2.4	14.1	42.6	-3.2	1.6	0	-4.1	cell wall	"SLP2 (subtilisin-like serine protease 2); subtilase Serine protease similar to subtilisin. similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to su"
MSGI1_23955	NODE_22082_length_441_cov_16.564627	22.1	2.4	14.1	42.6	-3.2	1.6	0	-4.1	protein.degradation.subtilases	"SLP2 (subtilisin-like serine protease 2); subtilase Serine protease similar to subtilisin. similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to su"
MSGI1_80115	NODE_22087_length_162_cov_2.580247	0	0	7.9	11.7	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_11514	NODE_22093_length_706_cov_27.694052	18.5	28.6	12.7	33.9	0	1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_53183	NODE_2210_length_233_cov_30.000000	16.1	13.3	43.9	18.6	0	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_32442	NODE_22105_length_347_cov_80.005760	61.3	31.9	9	19.4	0	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_88263	NODE_2211_length_149_cov_9.315436	58.2	16.3	18.7	11	-1.8	0	1.6	0	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2A.4 (HTA12) [Arabidopsis Thaliana] (GB:Q9LZ46); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT5G59870.1); similar to Histone H2A (GB:Q9M531); contains InterPro domain Histone-fold;"
MSGI1_106868	NODE_2212_length_126_cov_11.349206	1.8	3.5	22.6	8	0	0	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_90356	NODE_22121_length_146_cov_9.410959	3.1	1.3	16.7	1.2	0	-3.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_39313	NODE_22125_length_299_cov_21.558529	10.7	54.7	42.1	39.9	2.4	0	-2	0	protein.degradation.ubiquitin.E3.RING	zinc finger (C3HC4-type RING finger) family protein  similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G47160.1); similar to Os04g0679800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054282.1); similar to H0801D08.18 [Or
MSGI1_86957	NODE_22132_length_151_cov_8.728477	0.2	0	19.5	0.5	0	-5.3	-6.6	0	not assigned.unknown	not assigned.unknown
MSGI1_44911	NODE_22144_length_269_cov_19.457249	6.8	11.3	30.3	28.8	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_97988	NODE_22151_length_136_cov_42.507355	21.7	2.4	58.7	13.5	-3.2	-2.1	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_72940	NODE_22158_length_176_cov_6.897727	0	0	13.8	3.8	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_122012	NODE_22158_length_61_cov_44.131149	268	229.6	1.6	0	0	0	7.4	8.8	protein.aa activation.lysine-tRNA ligase	"lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative  Identical to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) [Arabidopsis Thaliana] (GB:Q9ZPI1); similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Ar"
MSGI1_64167	NODE_22165_length_197_cov_6.253807	0	0	3.6	15.9	0	0	0	-5	"misc.beta 1,3 glucan hydrolases"	"glycosyl hydrolase family 17 protein  similar to BG1 (BETA-1,3-GLUCANASE 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G57270.1); similar to beta-1,3-glucanase [Hevea brasiliensis] (GB:ABG49448.1); contains InterPro doma"
MSGI1_104026	NODE_22166_length_129_cov_6.968992	0.2	0.3	4.9	13.5	0	0	0	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_74340	NODE_22167_length_173_cov_60.213871	60.3	35.5	20	22.3	0	0	1.6	0	cell.organisation	"F-actin capping protein alpha subunit family protein  Identical to F-actin capping protein subunit alpha (CapZ-alpha) [Arabidopsis Thaliana] (GB:O82631;GB:Q9MA66); similar to F-actin capping protein, alpha subunit [Medicago truncatula] (GB:ABE92863.1); c"
MSGI1_42947	NODE_22169_length_279_cov_25.508961	16.5	4.9	28.5	3.8	0	-2.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_117323	NODE_22180_length_68_cov_15.382353	0	0.2	2.6	19.5	0	2.9	0	-6.6	not assigned.unknown	not assigned.unknown
MSGI1_82446	NODE_22189_length_158_cov_16.810127	0	0	30.6	14.9	0	0	-5.9	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_52969	NODE_22194_length_234_cov_11.918803	0	0.9	58.1	41.5	0	0	-6.9	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_24453	NODE_22196_length_434_cov_26.965437	16.9	92	36.9	58.2	2.4	0	0	0	protein.degradation.ubiquitin.E2	"PHO2/UBC24 (PHOSPHATE 2); ubiquitin-protein ligase Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. similar to UBC23 (ubiquitin-conjugating enzyme"
MSGI1_100452	NODE_22214_length_133_cov_47.962406	34.1	28.2	7.5	20.9	0	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_62709	NODE_22225_length_201_cov_10.477612	2.9	0.6	17.8	7.1	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_86245	NODE_22231_length_152_cov_11.638158	11.8	6.8	0	0	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_82445	NODE_22233_length_158_cov_8.430380	8.4	3.2	32.2	11.9	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_122008	NODE_22238_length_61_cov_14.622951	8.4	4.9	10.8	24.7	0	0	0	-2.3	protein.targeting	ATHSRP54A (Arabidopsis thaliana signal recognition particle 54kDa A); 7S RNA binding / GTP binding / mRNA binding 54 kDa protein subunit of SRP that interacts with the signal peptide of secreted proteins Identical to Signal recognition particle 54 kDa pr
MSGI1_122007	NODE_22242_length_61_cov_111.426231	61.9	55.6	28.3	42	0	0	1.1	0	signalling.G-proteins	"EF-1-alpha-related GTP-binding protein, putative  similar to elongation factor 1-alpha / EF-1-alpha [Arabidopsis thaliana] (TAIR:AT5G60390.1); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); simila"
MSGI1_107848	NODE_22250_length_125_cov_7.024000	3.5	3.6	20.9	3	0	-2.8	-2.6	0	protein.degradation.ubiquitin	UBQ5 (UBIQUITIN 5); protein binding  Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical to 40S ribosomal protein S27a-3 (UBQ5) [Arabidopsis Thaliana] (GB:P59233;GB:P192
MSGI1_107848	NODE_22250_length_125_cov_7.024000	3.5	3.6	20.9	3	0	-2.8	-2.6	0	protein.synthesis.misc ribososomal protein	UBQ5 (UBIQUITIN 5); protein binding  Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical to 40S ribosomal protein S27a-3 (UBQ5) [Arabidopsis Thaliana] (GB:P59233;GB:P192
MSGI1_14596	NODE_22250_length_614_cov_8.692183	9.9	1.8	68.7	1.5	0	-5.5	-2.8	0	transporter.sugars	"ATINT2 (INOSITOL TRANSPORTER 2); carbohydrate transporter/ sugar porter  Identical to Probable inositol transporter 2 (INT2) [Arabidopsis Thaliana] (GB:Q9C757); similar to ATINT3 (INOSITOL TRANSPORTER 3), carbohydrate transporter/ sugar porter [Arabidops"
MSGI1_71111	NODE_22253_length_180_cov_43.316666	34.8	25.4	0	0	0	0	6.1	5.7	not assigned.unknown	not assigned.unknown
MSGI1_19583	NODE_2226_length_513_cov_46.760235	29.4	18.7	8.8	20.2	0	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_112961	NODE_22265_length_106_cov_16.103773	10.9	6.3	26.9	42.5	0	0	0	-2.8	minor CHO metabolism.others	aldose 1-epimerase family protein  similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT3G47800.1); similar to Galactose mutarotase-like [Medicago truncatula] (GB:ABE90391.1); contains InterPro domain Galactose mutarotase-like; (Int
MSGI1_19298	NODE_2227_length_518_cov_252.249039	64.8	42.8	22.5	37.3	0	0	1.5	0	protein.synthesis.elongation	"nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative  Identical to Nascent polypeptide-associated complex subunit alpha-like protein 1 (NAC-alpha-like protein 1) (Alpha-NAC-like protein 1) [Arabidopsis Thaliana] (GB:"
MSGI1_64546	NODE_22278_length_196_cov_49.061226	27.8	16.2	8.1	15.2	0	0	1.8	0	protein.synthesis.misc ribososomal protein	60S acidic ribosomal protein P2 (RPP2B)  Identical to 60S acidic ribosomal protein P2-2 (RPP2B) [Arabidopsis Thaliana] (GB:Q9SLF7;GB:Q8LB03); similar to 60S acidic ribosomal protein P2 (RPP2A) [Arabidopsis thaliana] (TAIR:AT2G27720.1); similar to 60s acid
MSGI1_104024	NODE_22288_length_129_cov_4.961240	23.2	5.5	16.6	6.3	-2.1	0	0	0	cell wall.cellulose synthesis	"ATCSLC04 (Cellulose synthase-like C4); transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLC08 (Cellulose synthase-like C8), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G246"
MSGI1_96389	NODE_22297_length_138_cov_6.007246	1.3	2.6	24.4	12.9	0	0	-4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_31987	NODE_2230_length_351_cov_106.404556	107.9	437.9	276.8	322.1	2	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_59694	NODE_22300_length_210_cov_20.152382	27.5	20.3	2.7	7.4	0	0	3.3	0	DNA.synthesis/chromatin structure	NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) Encodes a putative pseudouridine synthase (NAP57). Identical to H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-) (Nucleolar protein NAP57 homolog) (Nopp-140-associated protein of 57 kDa homolog) (AtN
MSGI1_59693	NODE_22303_length_210_cov_11.085714	0.5	10.7	12.2	10.7	4.4	0	-4.6	0	RNA.regulation of transcription.bZIP transcription factor family	"TGA3 (TGA1a-related gene 3); DNA binding / calmodulin binding / transcription factor Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties. Identical to Trans"
MSGI1_39627	NODE_22307_length_297_cov_13.966330	18.6	0.7	1.1	0.1	-4.7	0	4.1	0	secondary metabolism.phenylpropanoids	transferase family protein encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091) similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G48930.1); similar t
MSGI1_60961	NODE_22309_length_206_cov_7.446602	8.7	27	2.2	3.8	0	0	0	2.8	not assigned.unknown	not assigned.unknown
MSGI1_58149	NODE_22311_length_215_cov_6.227907	5.9	1.7	6.9	69.5	0	3.3	0	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_74338	NODE_22312_length_173_cov_22.653179	123.9	54.2	43.2	60.7	-1.2	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_122005	NODE_22314_length_61_cov_78.540985	50.7	0.2	0.4	0	-8	0	7	0	not assigned.unknown	not assigned.unknown
MSGI1_56962	NODE_22335_length_219_cov_5.488585	3.4	7.8	19.2	16.6	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_37618	NODE_22336_length_309_cov_10.016181	0.9	3.8	18.4	12.2	0	0	-4.4	0	not assigned.unknown	not assigned.unknown
MSGI1_37021	NODE_2234_length_313_cov_26.881788	20.8	5.7	30.3	6.8	0	-2.2	0	0	stress.biotic	pathogenesis-related family protein  similar to pathogenesis-related protein-like protein [Medicago truncatula] (GB:ABE85366.1); contains domain NTF2-like (SSF54427)
MSGI1_72509	NODE_22354_length_177_cov_9.333333	1.9	9.7	17.2	4	0	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_34246	NODE_22355_length_333_cov_12.036036	0.8	2.4	30.3	0.4	0	-6.2	-5.2	0	protein.degradation.metalloprotease	ATFTSH6/FTSH6 (FtsH protease 6); ATP-dependent peptidase/ ATPase/ metallopeptidase/ peptidase/ zinc ion binding Encodes an FtsH protease that is localized to the chloroplast. AtFtsH6 is involved in the degradation of both Lhcb3 and Lhcb1 during senescenc
MSGI1_13785	NODE_22370_length_636_cov_12.517296	12.1	13.6	0.6	0.1	0	0	4.3	7.1	not assigned.unknown	not assigned.unknown
MSGI1_80113	NODE_22372_length_162_cov_12.629630	8.3	30.2	12	17.3	1.9	0	0	0	secondary metabolism.N misc.alkaloid-like	"tropinone reductase, putative / tropine dehydrogenase, putative  Identical to Putative tropinone reductase homolog At1g07440 (EC 1.1.1.-) [Arabidopsis Thaliana] (GB:Q9ASX2;GB:Q9LNW5); similar to short-chain dehydrogenase/reductase (SDR) family protein [A"
MSGI1_80113	NODE_22372_length_162_cov_12.629630	8.3	30.2	12	17.3	1.9	0	0	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"tropinone reductase, putative / tropine dehydrogenase, putative  Identical to Putative tropinone reductase homolog At1g07440 (EC 1.1.1.-) [Arabidopsis Thaliana] (GB:Q9ASX2;GB:Q9LNW5); similar to short-chain dehydrogenase/reductase (SDR) family protein [A"
MSGI1_81828	NODE_22377_length_159_cov_24.522013	11.2	56.5	6.9	21.4	2.3	0	0	1.4	not assigned.unknown	not assigned.unknown
MSGI1_30544	NODE_22385_length_364_cov_11.706044	17.2	1.1	1.8	0.1	-4	0	3.3	0	RNA.regulation of transcription.C2H2 zinc finger family	RNA recognition motif (RRM)-containing protein  similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G22100.1); similar to RNA-binding protein [Gymnadenia conopsea] (GB:ABD66518.1); contains InterPro domain Nucleotide
MSGI1_30544	NODE_22385_length_364_cov_11.706044	17.2	1.1	1.8	0.1	-4	0	3.3	0	RNA.RNA binding	RNA recognition motif (RRM)-containing protein  similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G22330.1); similar to putative RRM-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37669.1); cont
MSGI1_20784	NODE_22394_length_488_cov_25.678278	16	5.9	41.1	2.5	0	-4	0	0	protein.degradation.cysteine protease	"cysteine proteinase, putative  similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G48350.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (Int"
MSGI1_115849	NODE_22395_length_80_cov_14.875000	12.4	5.9	17.3	1.1	0	-4	0	0	protein.degradation.cysteine protease	"cysteine proteinase, putative  similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G48350.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (Int"
MSGI1_115982	NODE_22401_length_79_cov_46.430378	35.1	24.8	60.2	62.5	0	0	0	-1.3	lipid metabolism.FA synthesis and FA elongation.pyruvate DH	"PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA); pyruvate dehydrogenase (acetyl-transferring) pyruvate dehydrogenase E1 alpha subunit similar to AT-E1 ALPHA (pyruvate dehydrogenase complex E1 alpha subunit), pyruvate dehydrogenase (acetyl-transferring) [A"
MSGI1_68466	NODE_22417_length_186_cov_7.736559	54	28.7	16.9	27.8	0	0	1.7	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L10A (RPL10aB)  Identical to 60S ribosomal protein L10a-2 (RPL10AB) [Arabidopsis Thaliana] (GB:P59230;GB:P53029;GB:Q9C5M4;GB:Q9SLF8); similar to 60S ribosomal protein L10A (RPL10aA) [Arabidopsis thaliana] (TAIR:AT1G08360.1); similar
MSGI1_27422	NODE_22418_length_397_cov_10.944585	8.2	2.4	5.1	20.1	0	0	0	-3.1	misc.UDP glucosyl and glucoronyl transferases	UGT73B2; UDP-glucosyltransferase/ UDP-glycosyltransferase/ flavonol 3-O-glucosyltransferase The At4g34135 gene encodes a flavonol 7-O-glucosyltransferase (EC 2.4.1.237) that glucosylates also with a 20 fold lower activity flavonols (kaempferol and querce
MSGI1_90355	NODE_22426_length_146_cov_9.849315	10.1	11.2	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_58466	NODE_22433_length_214_cov_8.107476	8.6	27.5	24.9	57.2	0	1.2	0	-1.1	transport.ABC transporters and multidrug resistance systems	"ATPDR7/PDR7 (PLEIOTROPIC DRUG RESISTANCE 7); ATPase, coupled to transmembrane movement of substances  Identical to Probable pleiotropic drug resistance protein 7 (PDR7) [Arabidopsis Thaliana] (GB:Q7PC86;GB:Q9XI48); similar to ATPDR12/PDR12 (PLEIOTROPIC D"
MSGI1_59380	NODE_22436_length_211_cov_14.203792	2.2	0.6	66.6	15.3	0	-2.1	-4.9	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_69331	NODE_22450_length_184_cov_18.228260	9	14.7	5.7	27.8	0	2.3	0	0	glycolysis.pyrophosphate-fructose-6-P phosphotransferase	"MEE51 (maternal effect embryo arrest 51); diphosphate-fructose-6-phosphate 1-phosphotransferase  similar to pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative [Ar"
MSGI1_63446	NODE_22451_length_199_cov_39.010052	41.5	13.5	13.6	12.9	-1.6	0	1.6	0	cell wall	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41800.1); similar to Os03g0807700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051644.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); contains InterPro domain Galactose-binding l
MSGI1_111325	NODE_22464_length_119_cov_94.033615	44.1	15.3	22.5	22.7	-1.5	0	0	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"RPL9 (ribosomal protein L9); structural constituent of ribosome Plastid ribosomal protein CL9 Identical to 50S ribosomal protein L9, chloroplast precursor (CL9) (RPL9) [Arabidopsis Thaliana] (GB:P25864); similar to 50S ribosomal protein L9, chloroplast p"
MSGI1_90354	NODE_22469_length_146_cov_6.828767	2.3	3.5	16.4	12.6	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_68869	NODE_22470_length_185_cov_10.205405	6.8	5.6	26.4	6.7	0	-2	-2	0	transport.ABC transporters and multidrug resistance systems	ATMRP5 (Arabidopsis thaliana multidrug resistance-associated protein 5) member of MRP subfamily Identical to Multidrug resistance-associated protein 5 (EC 3.6.3.44) (Glutathione S-conjugate-transporting ATPase 5) (ATP-energized glutathione S- conjugate p
MSGI1_49723	NODE_22471_length_247_cov_26.704453	200.4	14.8	42.1	28.9	-3.8	0	2.3	0	cell wall.modification	"ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thali"
MSGI1_26272	NODE_22477_length_411_cov_43.099758	46.6	35.6	9.1	20.6	0	0	2.4	0	protein.synthesis.initiation	"eukaryotic translation initiation factor, putative (EIF4B5)  similar to EIF4B1 (eukaryotic translation initiation factor 4B1) [Arabidopsis thaliana] (TAIR:AT3G26400.1); similar to eukaryotic translation initiation factor 4B [Triticum aestivum] (GB:AAC282"
MSGI1_121996	NODE_22480_length_61_cov_60.311474	29.7	12	25.9	42	0	0	0	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_69330	NODE_22487_length_184_cov_10.836957	0.9	12.3	5.5	25.1	3.8	2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_101370	NODE_22489_length_132_cov_5.204545	0	0	5	11.4	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_76284	NODE_22497_length_169_cov_20.467455	22.7	3.3	4.7	1.5	-2.8	0	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_115848	NODE_225_length_80_cov_374.899994	33.8	105.4	36.6	91.3	1.6	1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_39311	NODE_22519_length_299_cov_13.996655	0	0.1	19.5	16.4	0	0	-5.3	-7.4	not assigned.unknown	not assigned.unknown
MSGI1_108843	NODE_22521_length_124_cov_6.620968	0.9	1.4	13.9	4.3	0	0	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_113826	NODE_22530_length_99_cov_61.060608	0	0	70.1	66.7	0	0	-7.1	-7.1	not assigned.unknown	not assigned.unknown
MSGI1_69328	NODE_22533_length_184_cov_10.646739	0.6	1.8	15.2	8.6	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_109836	NODE_22534_length_123_cov_6.910569	8.5	10.1	95	12.8	0	-2.9	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_58148	NODE_22535_length_215_cov_15.800000	0.7	0.5	33.1	12.7	0	0	-5.6	-4.7	protein.degradation.AAA type	AAA-type ATPase family protein  similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT3G50940.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE84083.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contai
MSGI1_111951	NODE_22536_length_114_cov_41.807018	31	33.4	2.2	6	0	0	3.8	2.5	not assigned.unknown	not assigned.unknown
MSGI1_16230	NODE_2254_length_573_cov_83.350784	0	0	82.9	124.5	0	0	-7.4	-8	not assigned.unknown	not assigned.unknown
MSGI1_73872	NODE_22548_length_174_cov_8.965517	2.4	0.7	19.3	1.1	0	-4.1	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_21160	NODE_2256_length_482_cov_934.856873	365.8	328	165.2	265.9	0	0	1.1	0	stress.abiotic.heat	"HSP81-2 (EARLY-RESPONSIVE TO DEHYDRATION 8); ATP binding a member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl."
MSGI1_47499	NODE_22562_length_257_cov_12.669261	8.8	11.4	0.6	0.3	0	0	0	5.2	not assigned.unknown	not assigned.unknown
MSGI1_77872	NODE_2257_length_166_cov_7.704819	0	0	22.7	15.9	0	0	-5.5	-5	not assigned.unknown	not assigned.unknown
MSGI1_18386	NODE_2258_length_532_cov_242.030075	162.8	49	133.3	138.2	-1.7	0	0	-1.5	PS.photorespiration.glycine cleavage	"glycine cleavage system H protein, mitochondrial, putative  Identical to Probable glycine cleavage system H protein 2, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q9LQL0); similar to GDCH (Glycine decarboxylase complex H) [Arabidopsis thaliana] (T"
MSGI1_77870	NODE_22584_length_166_cov_8.789157	36.9	14.3	3.6	13.5	0	0	3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_116415	NODE_22586_length_75_cov_120.146667	48.4	32.8	5	5.2	0	0	3.3	2.7	not assigned.unknown	not assigned.unknown
MSGI1_33958	NODE_22588_length_335_cov_37.143284	42.8	18.9	11	24.3	0	0	2	0	lipid metabolism.FA synthesis and FA elongation.Acetyl CoA Transacylase	[acyl-carrier-protein] S-malonyltransferase/ transferase  similar to [acyl-carrier protein] S-malonyltransferase [Brassica napus] (GB:CAB45522.1); contains InterPro domain Acyl transferase region; (InterPro:IPR001227); contains InterPro domain Malonyl CoA
MSGI1_112179	NODE_2259_length_112_cov_50.482143	43.8	20.7	12.7	15.7	0	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_38431	NODE_22590_length_304_cov_28.822369	19.2	113.7	13.7	67.1	2.6	2.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_87604	NODE_22591_length_150_cov_12.926666	1.3	1.5	14.1	13.1	0	0	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_64545	NODE_22594_length_196_cov_16.459183	18.8	5.7	3.6	4.3	0	0	2.4	0	cell wall.modification	"xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 32 precursor (EC 2.4.1.207) (At-XTH32) (XTH-32) (XT"
MSGI1_40140	NODE_22594_length_294_cov_8.149660	5.6	7.2	25.4	9.5	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_33194	NODE_22600_length_341_cov_16.102640	20.8	9.1	3.9	7.5	0	0	2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_121992	NODE_22603_length_61_cov_31.655737	17.3	12	0	0	0	0	5.1	4.6	cell. vesicle transport	"coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative  similar to coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative [Arabidopsis thaliana] (TAIR:AT4G31480.1); similar to Adaptin N terminal re"
MSGI1_9405	NODE_2262_length_786_cov_34.725189	25	52.5	0.1	0	0	0	8	6.7	not assigned.unknown	not assigned.unknown
MSGI1_38608	NODE_22623_length_303_cov_23.231024	0	0.1	56.6	60.3	0	0	-6.8	-9.2	not assigned.unknown	not assigned.unknown
MSGI1_34661	NODE_22623_length_330_cov_5.427273	1.7	1.6	13.4	13.9	0	0	0	-3.1	not assigned.unknown	not assigned.unknown
MSGI1_90350	NODE_22633_length_146_cov_67.356163	57.5	0.1	20.4	0.5	-9.2	-5.4	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_84990	NODE_22636_length_154_cov_31.935064	34.4	5.1	9.3	0.7	-2.8	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_121988	NODE_22644_length_61_cov_46.836067	28.3	17.6	0	0	0	0	5.8	5.1	not assigned.unknown	not assigned.unknown
MSGI1_104020	NODE_22648_length_129_cov_14.565891	89.8	59.1	30.7	80.5	0	1.4	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_28950	NODE_22655_length_380_cov_18.139473	24.1	42.5	16.1	7	0	0	0	2.6	hormone metabolism.salicylic acid.synthesis-degradation	UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G05670.1); similar to UDP-xylose phenolic glycosyltransferase [Solanum lycopersicum] (GB:CAI62049
MSGI1_81270	NODE_22656_length_160_cov_8.743750	0	0	25.1	8.2	0	0	-5.6	0	not assigned.unknown	not assigned.unknown
MSGI1_43930	NODE_22656_length_274_cov_8.587591	0.3	0.5	16.1	15.2	0	0	-5.7	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_73400	NODE_22659_length_175_cov_9.154285	6.5	0	17.9	0	0	-5.2	0	0	fermentation.aldehyde dehydrogenase	ALDH3F1 (ALDEHYDE DEHYDROGENASE 3F1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 3F1 (EC 1.2.1.3) (ALDH3F1) [Arabidopsis Thaliana] (GB:Q70E96;GB:O65516); similar to ALDH3H
MSGI1_27582	NODE_22659_length_395_cov_84.002533	93.5	177.1	152.9	57.6	0	-1.4	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_42187	NODE_22667_length_283_cov_24.561838	1.1	0.2	27.5	3.3	0	-3.1	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_83087	NODE_22670_length_157_cov_8.885350	0	0	8.3	21.4	0	0	0	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_51389	NODE_22674_length_240_cov_50.412498	19.9	88.2	74.9	16.7	2.1	-2.2	-1.9	2.4	not assigned.unknown	not assigned.unknown
MSGI1_71108	NODE_22688_length_180_cov_37.938889	43.4	32	1.8	1.5	0	0	4.6	4.4	not assigned.unknown	not assigned.unknown
MSGI1_86955	NODE_22691_length_151_cov_9.139072	0	0	18.3	0.2	0	-6.5	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_78388	NODE_22705_length_165_cov_12.024242	2.2	4.3	0.6	28.7	0	5.6	0	-2.7	not assigned.unknown	not assigned.unknown
MSGI1_64164	NODE_2271_length_197_cov_14.964467	0	0	16.7	14.6	0	0	-5.1	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_57874	NODE_2271_length_216_cov_21.717592	27	5.3	4.7	2.2	-2.3	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_110878	NODE_22711_length_122_cov_10.836065	3.8	3	20.2	4.7	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_56152	NODE_22715_length_222_cov_29.522522	29.8	28.7	0.3	0.9	0	0	6.6	5	not assigned.unknown	not assigned.unknown
MSGI1_66782	NODE_22716_length_190_cov_106.331581	43	14.5	11.2	5.8	-1.6	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_96387	NODE_22721_length_138_cov_7.079710	4.1	5.8	20.5	8.8	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_100445	NODE_22723_length_133_cov_7.736842	2.6	1.7	19.3	16.5	0	0	-2.9	-3.3	not assigned.unknown	not assigned.unknown
MSGI1_53484	NODE_22739_length_232_cov_35.909481	21	60.3	16.4	22.9	1.5	0	0	1.4	not assigned.unknown	not assigned.unknown
MSGI1_42780	NODE_2274_length_280_cov_47.667858	58	7.4	32.7	110.7	-3	1.8	0	-3.9	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_53181	NODE_22744_length_233_cov_12.012876	13.7	11.7	0.3	0.5	0	0	5.5	4.5	not assigned.unknown	not assigned.unknown
MSGI1_79509	NODE_22749_length_163_cov_11.846625	0.3	1.7	29.1	0.7	0	-5.4	-6.6	0	not assigned.unknown	not assigned.unknown
MSGI1_115980	NODE_2277_length_79_cov_51.392406	0.2	0.3	135	61.1	0	-1.1	-9.4	-7.7	not assigned.unknown	not assigned.unknown
MSGI1_51104	NODE_22773_length_241_cov_24.775934	57.4	0.7	29.8	2.2	-6.4	-3.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_20021	NODE_22783_length_504_cov_10.460318	16.6	50.8	14.4	30.1	1.6	0	0	0	protein.postranslational modification	"protein kinase family protein  similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G28290.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G04810.2); similar to Protein kinase [Medicago truncatula] (GB:ABE80294.1);"
MSGI1_35338	NODE_22785_length_325_cov_32.473846	41.7	0.3	3.3	0	-7.1	0	3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_50234	NODE_22821_length_245_cov_57.963264	55.1	22.1	39.1	54.6	-1.3	0	0	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_34811	NODE_22826_length_329_cov_13.054711	14.1	24.3	13.4	4.9	0	0	0	2.3	not assigned.unknown	not assigned.unknown
MSGI1_78910	NODE_22832_length_164_cov_6.060976	11	0.2	5.2	1.8	-5.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_121978	NODE_22835_length_61_cov_35.606556	11.7	34.9	29.5	33.8	1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_51103	NODE_22836_length_241_cov_14.381742	16.5	10.3	0.2	0	0	0	6.4	0	signalling.light	catalytic/ coenzyme binding  similar to flavin reductase-related [Arabidopsis thaliana] (TAIR:AT2G34460.1); similar to Tic62 protein [Pisum sativum] (GB:CAC87810.2); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509)
MSGI1_51103	NODE_22836_length_241_cov_14.381742	16.5	10.3	0.2	0	0	0	6.4	0	stress.abiotic.light	catalytic/ coenzyme binding  similar to flavin reductase-related [Arabidopsis thaliana] (TAIR:AT2G34460.1); similar to Tic62 protein [Pisum sativum] (GB:CAC87810.2); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509)
MSGI1_64544	NODE_22838_length_196_cov_11.265306	46.2	15.8	11.5	15	-1.5	0	2	0	major CHO metabolism.synthesis.starch.transporter	"AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding mitochondrial ADP/ATP carrier Identical to ADP,ATP carrier protein 1, mitochondrial precursor (ADP/ATP translocase 1) (Adenine nucleotide translocator 1) (ANT 1) (ANT1) [Arabidopsis Thaliana] (GB:P311"
MSGI1_64544	NODE_22838_length_196_cov_11.265306	46.2	15.8	11.5	15	-1.5	0	2	0	transport.metabolite transporters at the envelope membrane	"AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding mitochondrial ADP/ATP carrier Identical to ADP,ATP carrier protein 1, mitochondrial precursor (ADP/ATP translocase 1) (Adenine nucleotide translocator 1) (ANT 1) (ANT1) [Arabidopsis Thaliana] (GB:P311"
MSGI1_112550	NODE_22852_length_109_cov_18.605505	7.5	27.3	16.6	13.6	1.9	0	0	0	transport.amino acids	"AAP3 (amino acid permease 3); amino acid permease Amino acid permease which transports basic amino acids. similar to AAP4 (amino acid permease 4), amino acid permease [Arabidopsis thaliana] (TAIR:AT5G63850.1); similar to AAP5 (amino acid permease 5), ami"
MSGI1_46283	NODE_22855_length_263_cov_54.376427	42.9	31.8	14.5	14.5	0	0	1.6	0	glycolysis.pyrophosphate-fructose-6-P phosphotransferase	"pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative  similar to pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosp"
MSGI1_121973	NODE_22863_length_61_cov_129.524597	75	44.2	0.4	0.4	0	0	7.6	6.8	not assigned.unknown	not assigned.unknown
MSGI1_20157	NODE_22865_length_501_cov_7.093812	1.2	0.5	18.5	0.6	0	-4.9	-3.9	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_121972	NODE_22865_length_61_cov_69.885246	48.1	38.1	11.2	18.5	0	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_112959	NODE_22877_length_106_cov_189.367920	148.3	0.7	10.5	0.9	-7.7	0	3.8	0	cell wall.pectin*esterases.PME	"pectin methylesterase, putative  similar to pectin methylesterase, putative [Arabidopsis thaliana] (TAIR:AT1G11590.1); similar to pectin methylesterase [Sesbania rostrata] (GB:CAD29733.1); contains InterPro domain Virulence factor, pectin lyase fold; (In"
MSGI1_66779	NODE_2288_length_190_cov_135.089478	92.1	12.6	59.1	17.7	-2.9	-1.7	0	0	cell wall.modification	"EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4); hydrolase, acting on glycosyl bonds EXGT-A4, endoxyloglucan transferase, Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 5 precursor (EC 2.4.1.207) (At-XTH5) (XTH-5) (XTH5) [Arabidopsis Tha"
MSGI1_58463	NODE_22885_length_214_cov_4.219626	3.8	2.1	19.8	9.7	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_44691	NODE_22885_length_270_cov_62.270370	51.8	11.1	15.1	1.4	-2.2	-3.4	1.8	0	secondary metabolism.simple phenols	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_70647	NODE_22890_length_181_cov_17.447514	0	0	39.5	8.7	0	-2.2	-6.3	0	not assigned.unknown	not assigned.unknown
MSGI1_58462	NODE_22897_length_214_cov_11.242990	0	0	30.5	26.4	0	0	-5.9	-5.7	not assigned.unknown	not assigned.unknown
MSGI1_83081	NODE_2290_length_157_cov_53.885349	46.5	55	169.3	98.5	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_91796	NODE_22906_length_144_cov_5.131945	4.8	3.3	18.7	23.7	0	0	0	-2.8	protein.degradation.serine protease	"SNG1 (SINAPOYLGLUCOSE 1); serine carboxypeptidase sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose. similar to SCPL9, serine carboxypeptidase [Arabidopsi"
MSGI1_121969	NODE_22907_length_61_cov_76.163933	59.3	42.1	2.4	2.1	0	0	4.6	4.3	not assigned.unknown	not assigned.unknown
MSGI1_49722	NODE_22908_length_247_cov_14.291498	16.5	0.6	0	0	-4.8	0	5	0	misc.short chain dehydrogenase/reductase (SDR)	short-chain dehydrogenase/reductase (SDR) family protein  similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G26770.1); similar to Os03g0299200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049848.1);
MSGI1_15833	NODE_2291_length_582_cov_10.458763	16.9	1.9	4.2	0.9	-3.2	0	0	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	basic helix-loop-helix (bHLH) family protein  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G68920.2); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE85937.1); contains InterPro domain Helix-
MSGI1_115309	NODE_22922_length_85_cov_35.447060	21.7	9	4	1.4	0	0	2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_60014	NODE_22924_length_209_cov_7.411483	47.6	50.1	8.8	25.6	0	0	2.4	0	secondary metabolism.flavonoids.dihydroflavonols.flavonoid 3'-monooxygenase	TT7 (TRANSPARENT TESTA 7); flavonoid 3'-monooxygenase/ oxygen binding Required for flavonoid 3' hydroxylase activity. Identical to Flavonoid 3'-monooxygenase (EC 1.14.13.21) (Flavonoid 3'-hydroxylase) (AtF3'H) (Cytochrome P450 75B1) (TRANSPARENT TESTA 7
MSGI1_29240	NODE_22936_length_377_cov_7.564987	0.2	1.6	23.3	13.7	0	0	-6.9	-3.1	not assigned.unknown	not assigned.unknown
MSGI1_33565	NODE_22938_length_338_cov_72.733727	35.2	33	56.6	7.9	0	-2.8	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_67208	NODE_22941_length_189_cov_6.243386	0.3	0.1	23.3	1.4	0	-4.1	-6.3	0	not assigned.unknown	not assigned.unknown
MSGI1_93259	NODE_22944_length_142_cov_43.802818	25.8	20.9	83.5	67	0	0	-1.7	-1.7	amino acid metabolism.synthesis.aspartate family.methionine.methionine synthase	"AtMS2 (Arabidopsis thaliana methionine synthase 2); 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase Encodes a cytosolic methionine synthase, involved in methionine regeneration via the activated methyl cycle (or SAM cycle) similar"
MSGI1_121967	NODE_22954_length_61_cov_44.147541	12.1	26.1	6	3.7	0	0	0	2.8	stress.biotic	EDS1 (ENHANCED DISEASE SUSCEPTIBILITY 1); signal transducer/ triacylglycerol lipase Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases. similar to lipase class 3 family protein / disease resistance
MSGI1_20686	NODE_2296_length_490_cov_33.885715	40	27.2	13.9	25.2	0	0	1.5	0	protein.targeting.nucleus	"NTF2B (NUCLEAR TRANSPORT FACTOR 2B); Ran GTPase binding / protein transporter Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transp"
MSGI1_111823	NODE_22974_length_115_cov_20.321739	0	0	10.5	17.7	0	0	0	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_116724	NODE_22979_length_73_cov_11.589041	3.6	3.3	16.7	18.8	0	0	0	-2.5	not assigned.unknown	not assigned.unknown
MSGI1_19831	NODE_22981_length_508_cov_31.826771	6.1	11	0.2	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_91795	NODE_22988_length_144_cov_9.645833	1.8	2.8	17.5	15.9	0	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_73397	NODE_22988_length_175_cov_5.760000	3.7	5.7	23.3	6.4	0	0	-2.7	0	secondary metabolism.isoprenoids.non-mevalonate pathway	MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2)  Identical to Membrane-anchored ubiquitin-fold protein 2 (Membrane-anchored ub-fold protein 2) (AtMUB2) (NTGP5) (MUB2) [Arabidopsis Thaliana] (GB:Q8LCS8;GB:Q9LF36); similar to MUB1 (MEMBRANE-ANCHORED UBIQ
MSGI1_113156	NODE_23002_length_104_cov_83.567307	79.2	58.5	18.6	49.7	0	1.4	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_13168	NODE_23015_length_653_cov_12.767228	2.3	5	1.9	32.1	0	4.1	0	-2.7	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. similar to AP2 d"
MSGI1_25396	NODE_23028_length_422_cov_12.684834	22.1	24.9	16.9	49.8	0	1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_121963	NODE_23030_length_61_cov_176.311478	113.8	73	0.4	0	0	0	8.2	7.2	glycolysis.glyceraldehyde 3-phosphate dehydrogenase	"GAPC-2; glyceraldehyde-3-phosphate dehydrogenase  similar to GAPC (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT), glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G04120.1); similar to Glyceraldehyde-3-phosphate dehydrogenas"
MSGI1_108838	NODE_23033_length_124_cov_8.064516	7	3.4	18.1	1.6	0	-3.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_39310	NODE_23036_length_299_cov_63.508362	40.3	48.1	17.5	42.7	0	1.3	0	0	protein.degradation.subtilases	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14067.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_92523	NODE_23047_length_143_cov_12.167832	0.4	0	21.2	3.2	0	-2.7	-5.7	0	not assigned.unknown	not assigned.unknown
MSGI1_103118	NODE_2305_length_130_cov_19.407692	4.3	25	4.3	4.7	2.5	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_113339	NODE_23057_length_103_cov_13.572816	11.1	33.4	16.7	30.7	1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_69770	NODE_23068_length_183_cov_4.721312	0	0.2	18.1	11.7	0	0	-5.2	-5.9	not assigned.unknown	not assigned.unknown
MSGI1_121960	NODE_23071_length_61_cov_22.786884	13.8	0.5	1.2	5.8	-4.8	0	3.5	0	cell wall.degradation.pectate lyases and polygalacturonases	JP630; polygalacturonase Encodes aromatic rich glycoprotein JP630. Identical to Probable polygalacturonase non-catalytic subunit JP630 precursor (Aromatic-rich glycoprotein JP630) (JP630) [Arabidopsis Thaliana] (GB:P92982;GB:Q9S9K5); similar to BURP doma
MSGI1_75288	NODE_23074_length_171_cov_6.625731	0.6	2.7	13.6	6.1	0	0	-4.5	0	transport.misc	MATE efflux protein-related  similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT2G34360.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G73700.1); similar to Os04g0373400 [Oryza sativa (japonica cultivar-group)
MSGI1_93258	NODE_23075_length_142_cov_12.176056	11.4	9.7	0	0	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_90346	NODE_23081_length_146_cov_8.000000	1.2	3.3	16.7	5.8	0	0	-3.8	0	protein.degradation.ubiquitin.E3.RING	"copine-related  similar to copine-related [Arabidopsis thaliana] (TAIR:AT5G14420.2); similar to RING-finger protein [Capsicum annuum] (GB:AAX20031.1); contains InterPro domain Copine; (InterPro:IPR010734); contains InterPro domain von Willebrand factor,"
MSGI1_44542	NODE_23083_length_271_cov_13.317343	5.4	15.7	4.1	21.7	0	2.4	0	0	cell wall	"BRL2 (BRI1-LIKE 2); ATP binding / protein serine/threonine kinase Similar to BRI, brassinosteroid receptor protein. Identical to Serine/threonine-protein kinase BRI1-like 2 precursor (EC 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2) (Protein V"
MSGI1_44542	NODE_23083_length_271_cov_13.317343	5.4	15.7	4.1	21.7	0	2.4	0	0	hormone metabolism.brassinosteroid.signal transduction.BRI	"BRL2 (BRI1-LIKE 2); ATP binding / protein serine/threonine kinase Similar to BRI, brassinosteroid receptor protein. Identical to Serine/threonine-protein kinase BRI1-like 2 precursor (EC 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2) (Protein V"
MSGI1_17829	NODE_23085_length_541_cov_20.916821	29.1	4.1	3.1	2.8	-2.8	0	3.2	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	"protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to ELP (EXTENSIN-LIKE PROTEIN), lipid binding [Arabidopsis thaliana] (TAIR:AT1G12090.1); similar to proline-rich SAC51 [Brassica napus] (GB:AAC60566.1); contains InterPr"
MSGI1_66371	NODE_23089_length_191_cov_13.136126	14.9	0.9	0	0	-4	0	4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_96384	NODE_23090_length_138_cov_25.427536	5.6	16.7	24.9	5.8	0	-2.1	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_17537	NODE_23097_length_547_cov_12.060329	2.4	2.8	20.9	7.4	0	0	-3.1	0	protein.degradation.ubiquitin.E3.SCF.FBOX	"FKF1 (FLAVIN-BINDING KELCH DOMAIN F BOX PROTEIN); ubiquitin-protein ligase flavin-binding kelch domain F box protein, is clock-controlled, regulates transition to flowering Identical to Adagio protein 3 (Flavin-binding kelch repeat F-box protein 1) (F-bo"
MSGI1_80709	NODE_23100_length_161_cov_12.049689	13	0.9	0	0	-3.9	0	4.7	0	misc.cytochrome P450	"CYP82G1 (cytochrome P450, family 82, subfamily G, polypeptide 1); oxygen binding member of CYP82G similar to CYP82C4 (cytochrome P450, family 82, subfamily C, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31940.1); similar to CYP82C1p ["
MSGI1_27348	NODE_23101_length_398_cov_23.477386	33.1	3.1	2.6	1.4	-3.4	0	3.7	0	misc.cytochrome P450	"CYP82G1 (cytochrome P450, family 82, subfamily G, polypeptide 1); oxygen binding member of CYP82G similar to CYP82C4 (cytochrome P450, family 82, subfamily C, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31940.1); similar to CYP82C1p ["
MSGI1_75287	NODE_23102_length_171_cov_21.397661	24.4	19.8	104	13.6	0	-2.9	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_42602	NODE_23111_length_281_cov_13.000000	0.1	2.7	34.2	2.2	0	-4	-8.4	0	RNA.regulation of transcription.NAC domain transcription factor family	"ANAC104/XND1 (Arabidopsis NAC domain containing protein 104); transcription factor  similar to ANAC025 (Arabidopsis NAC domain containing protein 25), transcription factor [Arabidopsis thaliana] (TAIR:AT1G61110.1); similar to Os02g0555300 [Oryza sativa ("
MSGI1_42602	NODE_23111_length_281_cov_13.000000	0.1	2.7	34.2	2.2	0	-4	-8.4	0	development.unspecified	"ANAC104/XND1 (Arabidopsis NAC domain containing protein 104); transcription factor  similar to ANAC025 (Arabidopsis NAC domain containing protein 25), transcription factor [Arabidopsis thaliana] (TAIR:AT1G61110.1); similar to Os02g0555300 [Oryza sativa ("
MSGI1_46042	NODE_23121_length_264_cov_31.416666	34	0.9	4.8	5.4	-5.2	0	2.8	0	cell wall.degradation.pectate lyases and polygalacturonases	"PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding polygalacturonase inhibiting protein 1 (PGIP1) mRNA, Identical to Polygalacturonase inhibitor 1 precursor (Polygalacturonase-inhibiting protein) (PGIP-1) (PGIP1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_65242	NODE_23138_length_194_cov_11.778351	14	39.3	6.3	6.5	1.5	0	0	2.6	not assigned.unknown	not assigned.unknown
MSGI1_121954	NODE_23139_length_61_cov_34.983608	17.2	0.7	10.4	1.6	-4.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_68866	NODE_23143_length_185_cov_5.600000	5.7	12.1	0.4	0.4	0	0	0	4.9	not assigned.unknown	not assigned.unknown
MSGI1_60958	NODE_23145_length_206_cov_8.359223	0.5	0.1	19.3	0	0	-5.3	-5.3	0	not assigned.unknown	not assigned.unknown
MSGI1_18992	NODE_23149_length_523_cov_11.105163	11.9	12.5	58.8	5.5	0	-3.4	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_76279	NODE_23150_length_169_cov_15.455622	5.8	6.8	35.3	19.4	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_106857	NODE_23155_length_126_cov_53.825397	23.5	23.3	0	0	0	0	5.6	5.5	protein.degradation	"latex-abundant protein, putative (AMC7) / caspase family protein  similar to AMC6/ATMCP2B (TYPE-II METACASPASES), caspase/ cysteine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT1G79330.1); similar to latex-abundant protein [Hevea brasiliensis] (GB:A"
MSGI1_58461	NODE_23159_length_214_cov_6.752337	7.5	19.8	3	0.7	0	0	0	4.8	signalling.receptor kinases.leucine rich repeat X	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G17240.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G53"
MSGI1_58461	NODE_23159_length_214_cov_6.752337	7.5	19.8	3	0.7	0	0	0	4.8	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G17240.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G53"
MSGI1_39441	NODE_23161_length_298_cov_8.406040	3	1	16.6	0.3	0	-5.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_19777	NODE_23173_length_509_cov_14.394892	3.5	19.6	0.3	0.1	2.5	0	0	7.6	not assigned.unknown	not assigned.unknown
MSGI1_121948	NODE_23223_length_61_cov_12.885246	0.2	0	9.2	17.3	0	0	0	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_64877	NODE_23226_length_195_cov_31.666666	35.7	36.7	0	0.4	0	0	6.2	6.5	transport.ABC transporters and multidrug resistance systems	"ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19); ATPase, coupled to transmembrane movement of substances / auxin efflux transporter Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates"
MSGI1_64877	NODE_23226_length_195_cov_31.666666	35.7	36.7	0	0.4	0	0	6.2	6.5	stress.biotic	"ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19); ATPase, coupled to transmembrane movement of substances / auxin efflux transporter Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates"
MSGI1_35192	NODE_23227_length_326_cov_197.349686	122.7	56.9	34.2	67.6	-1.1	1	1.8	0	protein.synthesis.misc ribososomal protein	60S acidic ribosomal protein P0 (RPP0A)  Identical to 60S acidic ribosomal protein P0-1 (RPP0A) [Arabidopsis Thaliana] (GB:O04204); similar to 60S acidic ribosomal protein P0 (RPP0B) [Arabidopsis thaliana] (TAIR:AT3G09200.1); similar to Ribosomal protein
MSGI1_5009	NODE_2323_length_1059_cov_18.646837	12.8	11	0.2	0.4	0	0	6	4.8	cell.cycle	CYCD1;1 (CYCLIN D1;1); cyclin-dependent protein kinase regulator Encodes a D-type cyclin that physically interacts with CDC2A.  Its expression is upregulated early during germination. Identical to Cyclin delta-1 (CYCD1) [Arabidopsis Thaliana] (GB:P42751;
MSGI1_48845	NODE_23231_length_251_cov_20.673307	0.5	0.6	49.4	0.5	0	-6.6	-6.6	0	not assigned.unknown	not assigned.unknown
MSGI1_112958	NODE_23234_length_106_cov_99.481133	36.2	87.5	61	172.2	1.3	1.5	0	0	transporter.sugars.sucrose	"SUC2 (SUCROSE-PROTON SYMPORTER 2); carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter Encodes for a high-affinity  transporter essential for phloem loading and long-distance transport. A major sucrose transporter, AtSUC2 can also transpor"
MSGI1_44541	NODE_23235_length_271_cov_15.232472	13	9.1	1	0.3	0	0	3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_58144	NODE_2324_length_215_cov_20.720930	11.8	18.5	6.2	2.9	0	0	0	2.7	not assigned.unknown	not assigned.unknown
MSGI1_17579	NODE_2324_length_546_cov_18.558609	9.5	37.1	23.3	57.8	2	1.3	0	0	transport.metal	"YSL1 (YELLOW STRIPE LIKE 1); oligopeptide transporter Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1). similar to YSL2 (YELLOW STRIPE LIKE 2), oligopeptide transporter [Arabidopsis thaliana] (TAIR"
MSGI1_43929	NODE_23246_length_274_cov_8.839417	0.5	0.7	13	12.7	0	0	-4.7	-4.2	not assigned.unknown	not assigned.unknown
MSGI1_95588	NODE_23249_length_139_cov_7.302158	15.3	7.4	0	0.3	0	0	4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_12584	NODE_23258_length_671_cov_61.436661	22.3	14.3	2.7	11.5	0	0	3	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L4/L1 (RPL4A)  Identical to 60S ribosomal protein L4-1 (L1) (RPL4A) [Arabidopsis Thaliana] (GB:Q9SF40); similar to 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] (TAIR:AT5G02870.1); similar to putative 60S ribosomal prot
MSGI1_36843	NODE_23264_length_314_cov_8.573249	4.6	11.7	29.8	11.5	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_35491	NODE_23264_length_324_cov_7.456790	37.5	18.1	12.8	18.6	0	0	1.6	0	minor CHO metabolism.others	"AtkdsA1 (Arabidopsis thaliana KDO-8-phosphate synthase A1); 3-deoxy-8-phosphooctulonate synthase Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall r"
MSGI1_91067	NODE_23268_length_145_cov_25.641378	24	20.8	1.2	2.2	0	0	4.3	3.2	not assigned.unknown	not assigned.unknown
MSGI1_65990	NODE_23269_length_192_cov_8.979167	47	1.2	19.9	0.8	-5.3	-4.6	1.2	0	TCA / org. transformation.other organic acid transformaitons.malic	"ATNADP-ME2 (NADP-MALIC ENZYME 2); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME2 is presumably a cytosolic e"
MSGI1_112549	NODE_23279_length_109_cov_23.733946	15.6	12.2	0	0	0	0	5	4.6	not assigned.unknown	not assigned.unknown
MSGI1_81267	NODE_23283_length_160_cov_28.674999	84.9	48.7	18.7	20.2	0	0	2.2	1.3	protein.synthesis.misc ribososomal protein	60S ribosomal protein L17 (RPL17B)  Identical to 60S ribosomal protein L17-2 (RPL17B) [Arabidopsis Thaliana] (GB:P51413;GB:O64803); similar to 60S ribosomal protein L17 (RPL17A) [Arabidopsis thaliana] (TAIR:AT1G27400.1); similar to ribosomal protein [Pet
MSGI1_19915	NODE_2329_length_506_cov_80.152176	67.9	34.1	10.8	17.1	0	0	2.7	0	protein.synthesis.misc ribososomal protein	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein  Identical to H/ACA ribonucleoprotein complex subunit 2-like protein (Nhp2-like protein) [Arabidopsis Thaliana] (GB:Q9LEY9); similar to ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidop
MSGI1_25395	NODE_23291_length_422_cov_54.170616	47.7	33.6	0	0	0	0	6.6	6.1	not assigned.unknown	not assigned.unknown
MSGI1_49720	NODE_23298_length_247_cov_33.582996	40.2	3.9	9.3	9.4	-3.4	0	2.1	0	secondary metabolism.N misc.alkaloid-like	"FAD-binding domain-containing protein  Identical to Reticuline oxidase-like protein precursor (EC 1.21.-.-) [Arabidopsis Thaliana] (GB:Q9SVG4;GB:Q3E9Y2;GB:Q8H7B5); similar to ATSEC1A, electron carrier [Arabidopsis thaliana] (TAIR:AT1G01980.1); similar to"
MSGI1_49720	NODE_23298_length_247_cov_33.582996	40.2	3.9	9.3	9.4	-3.4	0	2.1	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"FAD-binding domain-containing protein  Identical to Reticuline oxidase-like protein precursor (EC 1.21.-.-) [Arabidopsis Thaliana] (GB:Q9SVG4;GB:Q3E9Y2;GB:Q8H7B5); similar to ATSEC1A, electron carrier [Arabidopsis thaliana] (TAIR:AT1G01980.1); similar to"
MSGI1_28864	NODE_233_length_381_cov_7.034121	5.5	11.5	0.5	0.3	0	0	0	5.3	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G24240.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsi"
MSGI1_28864	NODE_233_length_381_cov_7.034121	5.5	11.5	0.5	0.3	0	0	0	5.3	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G24240.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsi"
MSGI1_6934	NODE_233_length_913_cov_220.180725	6.2	0	457.4	1	0	-8.8	-6.2	0	cell wall.modification	"ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1) EXPANSIN-RELATED. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-like B1 precursor (AtEXLB1) (AtEXPR1) (At-EXPR1) (Ath- ExpBeta-3.1) (EXLB1) [Arab"
MSGI1_65989	NODE_23302_length_192_cov_12.973958	2.2	31	1.5	20	3.8	3.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_111321	NODE_23305_length_119_cov_45.915966	42.8	10.4	7	5.3	-2	0	2.6	0	cell wall.cell wall proteins.AGPs	"FLA2 (FLA2) AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds Identical to Fasciclin-like arabinogalactan protein 2 precursor (FLA2) [Arabidopsis Thaliana] (GB:Q9SU13;GB:Q8L9T2;GB:Q9C5Q6); similar to FLA1 (F"
MSGI1_40009	NODE_23312_length_295_cov_253.325424	285.1	166.9	39.1	74.3	0	0	2.9	1.2	cell wall	TUA5 (tubulin alpha-5) Encodes an isoform of alpha tubulin. Closely related to adjacent gene TUA3 suggesting recent duplication. Identical to Tubulin alpha-3/alpha-5 chain (TUBA5) [Arabidopsis Thaliana] (GB:P20363); similar to TUA3 (tubulin alpha-3) [Ara
MSGI1_40009	NODE_23312_length_295_cov_253.325424	285.1	166.9	39.1	74.3	0	0	2.9	1.2	cell.organisation	TUA5 (tubulin alpha-5) Encodes an isoform of alpha tubulin. Closely related to adjacent gene TUA3 suggesting recent duplication. Identical to Tubulin alpha-3/alpha-5 chain (TUBA5) [Arabidopsis Thaliana] (GB:P20363); similar to TUA3 (tubulin alpha-3) [Ara
MSGI1_40871	NODE_23316_length_290_cov_97.937927	16.6	43.5	13	25.3	1.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_86232	NODE_23320_length_152_cov_9.710526	45.9	11.7	10.7	5.9	-2	0	2.1	0	cell wall.cell wall proteins.AGPs	"FLA2 (FLA2) AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds Identical to Fasciclin-like arabinogalactan protein 2 precursor (FLA2) [Arabidopsis Thaliana] (GB:Q9SU13;GB:Q8L9T2;GB:Q9C5Q6); similar to FLA1 (F"
MSGI1_77863	NODE_23329_length_166_cov_4.734940	0.5	0.7	13.1	7.1	0	0	-4.7	0	misc.cytochrome P450	"CYP82G1 (cytochrome P450, family 82, subfamily G, polypeptide 1); oxygen binding member of CYP82G similar to CYP82C4 (cytochrome P450, family 82, subfamily C, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31940.1); similar to CYP82C1p ["
MSGI1_72504	NODE_2333_length_177_cov_11.491526	3.3	4.9	25.4	26.4	0	0	-2.9	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_56424	NODE_23340_length_221_cov_21.583710	25.8	26.5	6	20.1	0	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_97129	NODE_23344_length_137_cov_27.795620	6.1	25.4	12.3	5.8	2.1	0	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_112548	NODE_23349_length_109_cov_150.477066	122.2	3.5	1.1	0	-5.1	0	6.8	0	not assigned.unknown	not assigned.unknown
MSGI1_114997	NODE_23351_length_88_cov_85.125000	57.2	1	3.3	3.7	-5.8	0	4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_121941	NODE_23358_length_61_cov_15.278688	1.3	2.9	16.4	23.1	0	0	-3.7	-3	glycolysis.pyrophosphate-fructose-6-P phosphotransferase	"pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative  similar to pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosp"
MSGI1_11701	NODE_2336_length_700_cov_18.204287	25.6	3.4	1.5	0.9	-2.9	0	4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_37804	NODE_23361_length_308_cov_15.545455	7.4	28.8	17.6	14.1	2	0	0	0	RNA.regulation of transcription.MYB domain transcription factor family	"MYB85 (myb domain protein 85); DNA binding / transcription factor Encodes a putative transcription factor (MYB85). similar to MYB43 (myb domain protein 43), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G16600.1); similar to myb-rela"
MSGI1_37804	NODE_23361_length_308_cov_15.545455	7.4	28.8	17.6	14.1	2	0	0	0	cell wall	"MYB85 (myb domain protein 85); DNA binding / transcription factor Encodes a putative transcription factor (MYB85). similar to MYB43 (myb domain protein 43), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G16600.1); similar to myb-rela"
MSGI1_116414	NODE_23362_length_75_cov_72.320000	21.3	25.7	25.8	83.2	0	1.7	0	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_111473	NODE_23369_length_118_cov_21.610170	18.7	16.3	0	0	0	0	5.2	5	RNA.regulation of transcription.Alfin-like	"PHD finger family protein  similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT3G11200.1); similar to PHD4 [Medicago truncatula] (GB:ABJ99761.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro"
MSGI1_50454	NODE_23370_length_244_cov_7.131147	2.3	1.1	11.3	0.3	0	-5.2	0	0	minor CHO metabolism.myo-inositol.myo inositol oxygenases	MIOX1 (MYO-INISITOL OXYGENASE); oxidoreductase Encodes MIOX1.  Belongs to  myo-inositol oxygenase gene family. Identical to Inositol oxygenase 1 (EC 1.13.99.1) (Myo-inositol oxygenase 1) (AtMIOX1) (MIOX1) [Arabidopsis Thaliana] (GB:Q8L799;GB:Q8GXC4;GB:Q9M
MSGI1_80109	NODE_23387_length_162_cov_19.419754	0	0	10.5	26.6	0	0	0	-5.7	not assigned.unknown	not assigned.unknown
MSGI1_102182	NODE_23392_length_131_cov_12.702291	3.7	0.9	22.3	1.8	0	-3.6	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_79504	NODE_23399_length_163_cov_21.423313	10.4	36.9	6.7	5.2	1.8	0	0	2.8	not assigned.unknown	not assigned.unknown
MSGI1_101355	NODE_2341_length_132_cov_57.446968	65.5	65.2	31	66.8	0	1.1	1.1	0	protein.aa activation.threonine-tRNA ligase	"threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)  Identical to Threonyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.3) (Threonine--tRNA ligase) (ThrRS) (THRRS) [Arabidopsis Thaliana] (GB:O04630;GB:O81907;GB:Q84TG4;GB:Q94AG0); similar to t"
MSGI1_121938	NODE_23417_length_61_cov_23.540983	11.6	12	0	0	0	0	4.5	4.6	cell wall	"LAC5 (laccase 5); copper ion binding / oxidoreductase putative laccase, a member of laccase family of genes (17 members in Arabidopsis). similar to LAC3 (laccase 3), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G30210.1); similar t"
MSGI1_121938	NODE_23417_length_61_cov_23.540983	11.6	12	0	0	0	0	4.5	4.6	secondary metabolism.simple phenols	"LAC5 (laccase 5); copper ion binding / oxidoreductase putative laccase, a member of laccase family of genes (17 members in Arabidopsis). similar to LAC3 (laccase 3), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G30210.1); similar t"
MSGI1_54255	NODE_23418_length_229_cov_12.213974	13.5	57.8	3.2	6.4	2.1	0	0	3.2	cell wall	NIA2 (NITRATE REDUCTASE 2) Identified as a mutant resistant to chlorate. Encodes nitrate reductase structural gene. Involved in nitrate assimilation. Has nitrate reductase activity. Up-regulated by the fungus P. indica. Binds transcription factor At2g359
MSGI1_54255	NODE_23418_length_229_cov_12.213974	13.5	57.8	3.2	6.4	2.1	0	0	3.2	N-metabolism.nitrate metabolism.NR	NIA2 (NITRATE REDUCTASE 2) Identified as a mutant resistant to chlorate. Encodes nitrate reductase structural gene. Involved in nitrate assimilation. Has nitrate reductase activity. Up-regulated by the fungus P. indica. Binds transcription factor At2g359
MSGI1_77860	NODE_23422_length_166_cov_69.650604	62.1	46.5	1.3	0.7	0	0	5.6	6.1	mitochondrial electron transport / ATP synthesis.cytochrome c reductase	"ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative  similar to ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytoc"
MSGI1_16379	NODE_23429_length_570_cov_43.422806	27.9	4.5	15.6	6.6	-2.6	0	0	0	cell wall	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_16379	NODE_23429_length_570_cov_43.422806	27.9	4.5	15.6	6.6	-2.6	0	0	0	"misc.gluco-, galacto- and mannosidases"	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_16379	NODE_23429_length_570_cov_43.422806	27.9	4.5	15.6	6.6	-2.6	0	0	0	major CHO metabolism.degradation.starch.starch cleavage	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_16379	NODE_23429_length_570_cov_43.422806	27.9	4.5	15.6	6.6	-2.6	0	0	0	cell wall	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_66370	NODE_23431_length_191_cov_23.581152	13.8	11.2	284.8	15.3	0	-4.2	-4.4	0	not assigned.unknown	not assigned.unknown
MSGI1_36274	NODE_23444_length_318_cov_23.204403	21.3	27.6	0	0	0	0	5.4	5.8	not assigned.unknown	not assigned.unknown
MSGI1_1195	NODE_2345_length_1834_cov_45.339695	11.5	49.2	0.5	1.3	2.1	0	4.5	5.2	not assigned.unknown	not assigned.unknown
MSGI1_111650	NODE_23460_length_116_cov_43.017242	10.7	20	38.3	18.8	0	0	-1.8	0	cell wall.modification	"EXGT-A3 (endo-xyloglucan transferase A3); hydrolase, acting on glycosyl bonds EXGT-A3 has homology to xyloglucan endotransglucosylases/hydrolases (XTHs). Mutants in this gene show a lesion mimic phenotype associated with leaf maturation and a reduction i"
MSGI1_83077	NODE_23460_length_157_cov_14.229300	88.6	30.6	26.5	20.5	-1.5	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_111121	NODE_2347_length_121_cov_190.685944	145.1	78.2	50.4	93.3	0	0	1.5	0	stress.abiotic.heat	"heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)  Identical to Heat shock cognate 70 kDa protein 3 (Hsc70.3) (HSC70-3) [Arabidopsis Thaliana] (GB:O65719;GB:Q42345); similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR"
MSGI1_65613	NODE_2347_length_193_cov_43.155441	1.1	0.9	86.3	0	0	-7.4	-6.3	0	not assigned.unknown	not assigned.unknown
MSGI1_43487	NODE_23487_length_276_cov_16.286232	0.3	1.9	31.7	5.8	0	-2.5	-6.7	0	not assigned.unknown	not assigned.unknown
MSGI1_27085	NODE_23491_length_401_cov_84.491272	22.5	20.6	3.9	3.5	0	0	2.5	2.6	stress.biotic	CHAT (ACETYL COA:(Z)-3-HEXEN-1-OL ACETYLTRANSFERASE); acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase  similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G17540.1); similar to benzoyl coenzyme A: benzyl alcohol benzoyl transferase [Petuni
MSGI1_68461	NODE_23494_length_186_cov_6.080645	4.9	4.1	25.5	13.8	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_78906	NODE_23497_length_164_cov_13.896341	0.8	3.3	30	5.4	0	-2.5	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_121935	NODE_23498_length_61_cov_37.852459	9.5	9.5	39.5	40.8	0	0	-2.1	-2.1	transport.peptides and oligopeptides	proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G54140.1); similar to Os06g0264500 [Oryza sativa (japonica cultivar-group)] (GB:NP_00105
MSGI1_121934	NODE_2350_length_61_cov_8.639344	3.4	4.9	16	21.4	0	0	0	-2.1	secondary metabolism.phenylpropanoids.lignin biosynthesis.CCR1	cinnamoyl-CoA reductase family  similar to cinnamoyl-CoA reductase family [Arabidopsis thaliana] (TAIR:AT2G02400.1); similar to NmrA-like family protein [Solanum demissum] (GB:AAT39306.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (Int
MSGI1_67625	NODE_23512_length_188_cov_7.718085	0	0	12.1	8.6	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_84980	NODE_23524_length_154_cov_4.961039	27.3	4.5	14.2	11	-2.6	0	0	0	lipid metabolism.FA synthesis and FA elongation.acyl coa ligase	"AMP-dependent synthetase and ligase family protein  similar to 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT4G05160.1); similar to putative acyl-CoA synthetase [Capsicum annuum] (GB:AAL29212.1); si"
MSGI1_104014	NODE_23530_length_129_cov_26.720930	0.4	23.6	8.9	0.3	5.9	0	0	6.3	not assigned.unknown	not assigned.unknown
MSGI1_60617	NODE_2354_length_207_cov_65.265701	34.1	12.5	61.9	51	0	0	0	-2	not assigned.unknown	not assigned.unknown
MSGI1_37464	NODE_23543_length_310_cov_6.858065	7.5	0.5	5.7	12	0	0	0	-4.6	protein.degradation.subtilases	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1); similar to Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE93526.1); contains InterPro domain Pro"
MSGI1_31416	NODE_23544_length_356_cov_17.561798	6.5	22	2.7	3.7	0	0	0	2.6	not assigned.unknown	not assigned.unknown
MSGI1_104012	NODE_23549_length_129_cov_3.860465	4.4	26.8	9.5	9.2	2.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_89631	NODE_23551_length_147_cov_13.503402	8.2	4.9	21.5	1.7	0	-3.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_108834	NODE_23558_length_124_cov_45.225807	40.9	23.9	5.5	5.1	0	0	2.9	2.2	not assigned.unknown	not assigned.unknown
MSGI1_35057	NODE_23563_length_327_cov_28.238533	17.3	17.7	0	0.1	0	0	5.1	7.5	not assigned.unknown	not assigned.unknown
MSGI1_104920	NODE_23568_length_128_cov_11.296875	0	0	11	20.7	0	0	0	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_33422	NODE_23576_length_339_cov_7.209440	1	0.9	3.8	19.8	0	2.4	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_97970	NODE_23581_length_136_cov_30.036764	0.1	0.9	51.5	0	0	-6.7	-9	0	not assigned.unknown	not assigned.unknown
MSGI1_99564	NODE_23588_length_134_cov_7.276119	2.8	5.4	18.2	11.3	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_38876	NODE_2359_length_301_cov_135.112961	47.1	50.4	88.9	31.1	0	-1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_36041	NODE_23606_length_320_cov_26.068750	9	17.1	38.3	2.5	0	-3.9	-2.1	2.8	not assigned.unknown	not assigned.unknown
MSGI1_92519	NODE_23608_length_143_cov_14.538462	7.6	8.9	29.3	4.2	0	-2.8	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_93257	NODE_23617_length_142_cov_5.281690	0	0	3.4	11.6	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_121929	NODE_23628_length_61_cov_81.213112	17.2	22.5	55.5	42.4	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_19113	NODE_2363_length_521_cov_9.556622	1	6.5	25.8	5.3	0	-2.3	-4.7	0	protein.degradation.ubiquitin.E3.SCF.FBOX	F-box family protein  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G39460.1); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G39480.1); similar to Os08g0105100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060784.1
MSGI1_22640	NODE_2364_length_461_cov_43.945770	20.9	98	90.9	150.3	2.2	0	-2.1	0	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN1 (DARK INDUCIBLE 6) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumul"
MSGI1_35735	NODE_23645_length_322_cov_11.577640	39.1	47.9	19.9	45.7	0	1.2	0	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase family protein  similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to lipoxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G72520.1); similar to LOX2 (LIPOXYGENASE 2) [Arabi"
MSGI1_121927	NODE_23651_length_61_cov_4.622951	0	0	16	5.8	0	0	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_44538	NODE_23663_length_271_cov_10.656827	3.1	4.7	27.3	2.9	0	-3.2	-3.1	0	cell wall	ANAC074 (Arabidopsis NAC domain containing protein 74); transcription factor  similar to no apical meristem (NAM) family protein [Arabidopsis thaliana] (TAIR:AT2G24430.2); similar to salicylic acid-induced protein 19 [Capsicum annuum] (GB:AAQ75123.1); sim
MSGI1_44538	NODE_23663_length_271_cov_10.656827	3.1	4.7	27.3	2.9	0	-3.2	-3.1	0	cell wall	ANAC074 (Arabidopsis NAC domain containing protein 74); transcription factor  similar to no apical meristem (NAM) family protein [Arabidopsis thaliana] (TAIR:AT2G24430.2); similar to salicylic acid-induced protein 19 [Capsicum annuum] (GB:AAQ75123.1); sim
MSGI1_44538	NODE_23663_length_271_cov_10.656827	3.1	4.7	27.3	2.9	0	-3.2	-3.1	0	RNA.regulation of transcription.NAC domain transcription factor family	ANAC074 (Arabidopsis NAC domain containing protein 74); transcription factor  similar to no apical meristem (NAM) family protein [Arabidopsis thaliana] (TAIR:AT2G24430.2); similar to salicylic acid-induced protein 19 [Capsicum annuum] (GB:AAQ75123.1); sim
MSGI1_44538	NODE_23663_length_271_cov_10.656827	3.1	4.7	27.3	2.9	0	-3.2	-3.1	0	development.unspecified	ANAC074 (Arabidopsis NAC domain containing protein 74); transcription factor  similar to no apical meristem (NAM) family protein [Arabidopsis thaliana] (TAIR:AT2G24430.2); similar to salicylic acid-induced protein 19 [Capsicum annuum] (GB:AAQ75123.1); sim
MSGI1_68060	NODE_23665_length_187_cov_16.048128	19.7	2.5	8.6	6.1	-3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_10799	NODE_2367_length_731_cov_44.782490	34.8	48.4	21.9	13	0	0	0	1.9	hormone metabolism.auxin.induced-regulated-responsive-activated	"auxin-responsive protein -related  similar to membrane protein, putative [Arabidopsis thaliana] (TAIR:AT3G07570.1); similar to membrane protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC01247.1); contains InterPro domain DOMON related; (InterP"
MSGI1_38605	NODE_23671_length_303_cov_5.996700	2.4	6.9	17.6	3.8	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_36432	NODE_23673_length_317_cov_28.283911	19.5	21.5	0.5	0.8	0	0	5.3	4.7	not assigned.unknown	not assigned.unknown
MSGI1_50229	NODE_23675_length_245_cov_14.412245	66.3	44.2	28.6	74.5	0	1.4	1.2	0	cell wall	"osmotin-like protein, putative  similar to pathogenesis-related thaumatin family protein [Arabidopsis thaliana] (TAIR:AT1G75800.1); similar to thaumatin-like cytokinin-binding protein [Brassica oleracea] (GB:AAO12209.1); contains InterPro domain Thaumati"
MSGI1_50229	NODE_23675_length_245_cov_14.412245	66.3	44.2	28.6	74.5	0	1.4	1.2	0	stress.abiotic	"osmotin-like protein, putative  similar to pathogenesis-related thaumatin family protein [Arabidopsis thaliana] (TAIR:AT1G75800.1); similar to thaumatin-like cytokinin-binding protein [Brassica oleracea] (GB:AAO12209.1); contains InterPro domain Thaumati"
MSGI1_112416	NODE_23682_length_110_cov_29.918182	106.4	84.7	51.6	52.1	0	0	1	0	protein.targeting.mitochondria	"MPPBETA; metalloendopeptidase  Identical to Probable mitochondrial-processing peptidase subunit beta, mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) [Arabidopsis Thaliana] (GB:Q42290;GB:Q9SGA7); similar to mitochondrial processing peptidase alpha subu"
MSGI1_54254	NODE_23688_length_229_cov_8.113537	0	0	21.6	15.7	0	0	-5.4	-5	not assigned.unknown	not assigned.unknown
MSGI1_121924	NODE_23698_length_61_cov_9.377049	0	0	30.3	8.2	0	-1.9	-5.9	0	not assigned.unknown	not assigned.unknown
MSGI1_42402	NODE_23701_length_282_cov_6.496454	2.3	12.2	0.6	0.1	0	0	0	6.9	not assigned.unknown	not assigned.unknown
MSGI1_107839	NODE_23713_length_125_cov_9.120000	0	0	7.3	22.6	0	0	0	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_58784	NODE_23715_length_213_cov_6.300469	0.4	0.6	5.8	11	0	0	0	-4.2	cell. vesicle transport	exocyst complex subunit Sec15-like family protein  similar to exocyst complex subunit Sec15-like family protein [Arabidopsis thaliana] (TAIR:AT3G56640.1); similar to PREDICTED: similar to Exocyst complex component Sec15A isoform 3 [Canis familiaris] (GB:X
MSGI1_86949	NODE_23722_length_151_cov_7.271523	0	0.3	10.3	10.7	0	0	0	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_73392	NODE_23734_length_175_cov_11.777143	1.3	2.2	24.3	8.1	0	0	-4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_77274	NODE_23738_length_167_cov_11.077845	4.1	1.5	24.1	8.1	0	0	-2.6	0	misc.cytochrome P450	"CYP71B34 (cytochrome P450, family 71, subfamily B, polypeptide 34); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B34 (EC 1.14.-.-) (CYP71B34) [Arabidopsis Thaliana] (GB:Q9LIP6); similar to CYP71B35 (cytochrome P450, family 71, s"
MSGI1_115308	NODE_23758_length_85_cov_65.776474	21.8	25.4	0	0	0	0	5.4	5.7	transport.misc	"permease, putative  Identical to Nucleobase-ascorbate transporter 6 (AtNAT6) (NAT6) [Arabidopsis Thaliana] (GB:Q27GI3;GB:Q3E869;GB:Q94CA7;GB:Q9FM07); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:AT5G49990.1); similar to"
MSGI1_99562	NODE_23761_length_134_cov_9.141791	0	0	15.7	6.7	0	0	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_121921	NODE_23762_length_61_cov_9.721312	56.5	4.7	46.7	6.6	-3.6	-2.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_16774	NODE_23768_length_562_cov_9.528470	7.6	0.7	24.8	2.2	0	-3.5	0	0	stress.abiotic.drought/salt	RD22 (RESPONSIVE TO DESSICATION 22) responsive to dehydration 22 (RD22) mediated by ABA Identical to Dehydration-responsive protein RD22 precursor (RD22) [Arabidopsis Thaliana] (GB:Q08298); similar to BURP domain-containing protein [Arabidopsis thaliana]
MSGI1_42775	NODE_23789_length_280_cov_5.250000	0.6	1.3	4.4	15.1	0	0	0	-3.5	signalling.receptor kinases.leucine rich repeat XII	FLS2 (FLAGELLIN-SENSITIVE 2); ATP binding / kinase/ protein binding / protein serine/threonine kinase/ transmembrane receptor protein serine/threonine kinase Encodes a leucine-rich repeat serine/threonine protein kinase that is expressed ubiquitously. FL
MSGI1_100436	NODE_2379_length_133_cov_49.556393	24.1	21.5	6	13.7	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_79502	NODE_2379_length_163_cov_62.822086	9.4	4.9	78.2	7.2	0	-3.4	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_52407	NODE_23790_length_236_cov_27.360170	86.5	12.8	50.4	30.1	-2.8	0	0	0	nucleotide metabolism.degradation	"ATAPY2 (APYRASE 2) Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY1 causes a complete inhibition of pollen germination. similar to ATAPY1 (APYRASE 1), calmodulin binding [Arabidopsis thaliana] (T"
MSGI1_88962	NODE_23795_length_148_cov_9.858109	0	0	20.7	10.3	0	0	-5.4	0	not assigned.unknown	not assigned.unknown
MSGI1_8527	NODE_2380_length_830_cov_263.459045	185.2	104.9	93.3	127.4	0	0	1	0	mitochondrial electron transport / ATP synthesis.F1-ATPase	"ATP synthase beta chain, mitochondrial, putative  Identical to ATP synthase subunit beta-3, mitochondrial precursor (EC 3.6.3.14) [Arabidopsis Thaliana] (GB:Q9C5A9); similar to ATP synthase beta chain 1, mitochondrial [Arabidopsis thaliana] (TAIR:AT5G086"
MSGI1_77273	NODE_23804_length_167_cov_13.101796	1.3	1.1	7.9	13.4	0	0	0	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_59097	NODE_23806_length_212_cov_9.816038	1.2	1.1	22.8	0.4	0	-5.8	-4.2	0	stress.biotic	"ADR1-L1 (ADR1-LIKE 1); ATP binding / protein binding  Identical to Probable disease resistance protein At4g33300 [Arabidopsis Thaliana] (GB:Q9SZA7;GB:Q56WJ3); similar to ADR1-L2 (ADR1-LIKE 2), ATP binding / nucleoside-triphosphatase/ nucleotide binding /"
MSGI1_76817	NODE_23808_length_168_cov_40.940475	16.5	23.6	14	49.1	0	1.8	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_76817	NODE_23808_length_168_cov_40.940475	16.5	23.6	14	49.1	0	1.8	0	0	cell wall	TIP4;1 (tonoplast intrinsic protein 4;1); water channel  Identical to Aquaporin TIP4.1 (Tonoplast intrinsic protein 4.1) (Epsilon-tonoplast intrinsic protein) (Epsilon-TIP) (TIP4.1) [Arabidopsis Thaliana] (GB:O82316;GB:Q53XD1); similar to GAMMA-TIP (Tono
MSGI1_76817	NODE_23808_length_168_cov_40.940475	16.5	23.6	14	49.1	0	1.8	0	0	transport.Major Intrinsic Proteins.TIP	TIP4;1 (tonoplast intrinsic protein 4;1); water channel  Identical to Aquaporin TIP4.1 (Tonoplast intrinsic protein 4.1) (Epsilon-tonoplast intrinsic protein) (Epsilon-TIP) (TIP4.1) [Arabidopsis Thaliana] (GB:O82316;GB:Q53XD1); similar to GAMMA-TIP (Tono
MSGI1_112175	NODE_2381_length_112_cov_60.321430	53	38	8.5	25.9	0	0	2.6	0	protein.synthesis.misc ribososomal protein	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein  similar to ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] (TAIR:AT4G22380.1); similar to Os03g0241200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049514.1); simi
MSGI1_71998	NODE_23813_length_178_cov_41.084270	21	29.9	2.2	3.8	0	0	3.3	3	not assigned.unknown	not assigned.unknown
MSGI1_94074	NODE_23815_length_141_cov_6.666667	0	0	14.7	15.1	0	0	-4.9	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_112046	NODE_23818_length_113_cov_8.699115	4.1	6.4	27.5	12.7	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_53478	NODE_23822_length_232_cov_19.125000	47.8	33.2	21.2	27	0	0	1.2	0	hormone metabolism.brassinosteroid.synthesis-degradation.sterols.CYP51	"CYP51G1 (CYTOCHROME P450 51); oxygen binding putative obtusifoliol 14-alpha demethylase involved in sterol biosynthesis. similar to CYP707A3 (cytochrome P450, family 707, subfamily A, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G45340."
MSGI1_8113	NODE_2383_length_851_cov_37.634548	9.7	8.3	38.9	7.7	0	-2.3	-2	0	cell wall	"PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE); kinase Encodes a phosphoenolpyruvate carboxylase kinase that is expressed at highest levels in leaves. Expression is induced by light. similar to PPCK2 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2), kinase [Ar"
MSGI1_8113	NODE_2383_length_851_cov_37.634548	9.7	8.3	38.9	7.7	0	-2.3	-2	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_8113	NODE_2383_length_851_cov_37.634548	9.7	8.3	38.9	7.7	0	-2.3	-2	0	glycolysis.PEPCK	"PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE); kinase Encodes a phosphoenolpyruvate carboxylase kinase that is expressed at highest levels in leaves. Expression is induced by light. similar to PPCK2 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2), kinase [Ar"
MSGI1_58141	NODE_23846_length_215_cov_5.911628	0	0	12.5	12.3	0	0	-4.6	-4.6	cell.cycle	cell cycle control protein-related  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G25988.1); similar to Family of unknown function (DUF572) [Medicago truncatula] (GB:ABE90663.1); contains InterPro domain Protein of unknown function DUF572; (I
MSGI1_42600	NODE_23846_length_281_cov_30.256227	11.8	19.8	6.4	24	0	1.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_77272	NODE_23865_length_167_cov_17.532934	0.4	5.1	4.9	22.7	0	2.2	0	-2.2	hormone metabolism.gibberelin.synthesis-degradation.ent-kaurenoic acid hydroxylase/oxygenase	KAO2 (ENT-KAURENOIC ACID HYDROXYLASE 2); oxygen binding ent-kaurenoic acid hydroxylase (KAO2) Identical to Ent-kaurenoic acid oxidase 2 (EC 1.14.13.79) (AtKAO2) (Cytochrome P450 88A4) (KAO2) [Arabidopsis Thaliana] (GB:Q9C5Y2;GB:Q9ZV72); similar to CYP88A
MSGI1_104007	NODE_23872_length_129_cov_14.534883	5.7	13.2	29.4	20.8	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_96379	NODE_23883_length_138_cov_7.057971	0	0.1	6.8	13.6	0	0	0	-7.1	not assigned.unknown	not assigned.unknown
MSGI1_12190	NODE_2389_length_683_cov_100.748169	63.3	71.5	27	48.4	0	0	1.2	0	RNA.regulation of transcription.Aux/IAA family	IAA9 (indoleacetic acid-induced protein 9); transcription factor auxin (indole-3-acetic acid) induced gene Identical to Auxin-responsive protein IAA9 (Indoleacetic acid-induced protein 9) (IAA9) [Arabidopsis Thaliana] (GB:Q38827;GB:Q8LBP2;GB:Q9FLH4); simi
MSGI1_12190	NODE_2389_length_683_cov_100.748169	63.3	71.5	27	48.4	0	0	1.2	0	hormone metabolism.auxin.induced-regulated-responsive-activated	IAA9 (indoleacetic acid-induced protein 9); transcription factor auxin (indole-3-acetic acid) induced gene Identical to Auxin-responsive protein IAA9 (Indoleacetic acid-induced protein 9) (IAA9) [Arabidopsis Thaliana] (GB:Q38827;GB:Q8LBP2;GB:Q9FLH4); simi
MSGI1_76274	NODE_23893_length_169_cov_29.118343	12	10.4	41.9	31.4	0	0	-1.8	-1.6	transport.p- and v-ATPases.H+-transporting two-sector ATPase	"H+-transporting two-sector ATPase, putative  Identical to Probable vacuolar ATP synthase subunit d 2 (EC 3.6.3.14) (V-ATPase d subunit 2) (Vacuolar proton pump subunit d 2) [Arabidopsis Thaliana] (GB:Q9LHA4); Identical to Probable vacuolar ATP synthase s"
MSGI1_39101	NODE_23895_length_300_cov_21.323334	2.3	4.9	27.4	6.2	0	-2.1	-3.6	0	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS11 (Arabidopsis thaliana trehalose phosphatase/synthase 11); transferase, transferring glycosyl groups Encodes an enzyme putatively involved in trehalose biosynthesis.  The protein has a trehalose synthase (TPS)-like domain that may or may not be ac"
MSGI1_103114	NODE_23907_length_130_cov_18.230770	13.2	10.2	51.1	24.4	0	0	-2	0	transport.peptides and oligopeptides	proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G54140.1); similar to Os06g0264500 [Oryza sativa (japonica cultivar-group)] (GB:NP_00105
MSGI1_65238	NODE_23912_length_194_cov_10.396907	13.2	3.6	23.8	18.5	0	0	0	-2.4	cell wall	dehydration-responsive protein-related  similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G14430.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT3G23300.1); similar to dehydration-respo
MSGI1_65238	NODE_23912_length_194_cov_10.396907	13.2	3.6	23.8	18.5	0	0	0	-2.4	stress.abiotic.drought/salt	dehydration-responsive protein-related  similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G14430.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT3G23300.1); similar to dehydration-respo
MSGI1_14500	NODE_2394_length_616_cov_36.568180	0	0	48.4	63.6	0	0	-6.6	-7	not assigned.unknown	not assigned.unknown
MSGI1_53176	NODE_23949_length_233_cov_9.695279	0	0	11.6	13.3	0	0	-4.5	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_66365	NODE_23955_length_191_cov_92.424088	62.6	36.2	13.3	17.7	0	0	2.2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L7 (RPL7D)  Identical to 60S ribosomal protein L7-4 (RPL7D) [Arabidopsis Thaliana] (GB:Q9LHP1); similar to 60S ribosomal protein L7 (RPL7B) [Arabidopsis thaliana] (TAIR:AT2G01250.1); similar to ribosomal protein L7 (GB:1909359B); co
MSGI1_104005	NODE_23962_length_129_cov_4.953488	1.6	0.1	3.8	10.6	0	0	0	-6.7	not assigned.unknown	not assigned.unknown
MSGI1_95582	NODE_23973_length_139_cov_34.856113	18.5	25.8	68.3	17.1	0	-2	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_57223	NODE_23983_length_218_cov_10.972477	1.7	3.5	16.9	2.5	0	-2.8	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_116554	NODE_2399_length_74_cov_23.864864	0	0	26.3	16.8	0	0	-5.7	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_82437	NODE_24007_length_158_cov_5.867089	7.1	1.2	25.5	15.6	0	0	0	-3.7	protein.degradation	ATGGH1; gamma-glutamyl hydrolase The Arabidopsis protein AtGGH1 is a gamma-glutamyl hydrolase cleaving pentaglutamates to yield di- and triglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole. similar to ATGGH2
MSGI1_82437	NODE_24007_length_158_cov_5.867089	7.1	1.2	25.5	15.6	0	0	0	-3.7	Co-factor and vitamine metabolism.folate & vitamine K.folate	ATGGH1; gamma-glutamyl hydrolase The Arabidopsis protein AtGGH1 is a gamma-glutamyl hydrolase cleaving pentaglutamates to yield di- and triglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole. similar to ATGGH2
MSGI1_50925	NODE_24007_length_242_cov_33.429752	7.2	4.8	41.4	8.9	0	-2.2	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_23467	NODE_24014_length_450_cov_10.044444	0.9	1.3	25.7	19.5	0	0	-4.8	-3.9	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_23467	NODE_24014_length_450_cov_10.044444	0.9	1.3	25.7	19.5	0	0	-4.8	-3.9	secondary metabolism.flavonoids.flavonols	"SRG1 (SENESCENCE-RELATED GENE 1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors Encodes a novel member of the Fe(II"
MSGI1_101348	NODE_24017_length_132_cov_13.151515	1.1	0.1	24.4	4.2	0	-2.5	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_52691	NODE_24018_length_235_cov_6.404255	0.1	0.2	20	31.7	0	0	-7.6	-7.3	not assigned.unknown	not assigned.unknown
MSGI1_51916	NODE_24027_length_238_cov_7.735294	0.2	0.2	14.5	17.1	0	0	-6.2	-6.4	not assigned.unknown	not assigned.unknown
MSGI1_108830	NODE_24030_length_124_cov_5.870968	0.1	0.6	27	11.9	0	0	-8.1	-4.3	not assigned.unknown	not assigned.unknown
MSGI1_121916	NODE_24043_length_61_cov_17.606558	0	0	5.2	18.9	0	0	0	-5.2	signalling.receptor kinases.leucine rich repeat XI	"BAM1 (big apical meristem 1); ATP binding / kinase/ protein serine/threonine kinase Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It ha"
MSGI1_94072	NODE_24046_length_141_cov_10.418440	21.7	6.8	20	26.8	0	0	0	-2	not assigned.unknown	not assigned.unknown
MSGI1_39308	NODE_24051_length_299_cov_12.180602	0	0	14.2	8.3	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_121915	NODE_24054_length_61_cov_64.426231	11	37.6	0.8	0	1.8	0	0	6.2	not assigned.unknown	not assigned.unknown
MSGI1_121914	NODE_24066_length_61_cov_38.295082	1.5	2.7	31.5	1.2	0	-4.7	-4.4	0	not assigned.unknown	not assigned.unknown
MSGI1_83074	NODE_24072_length_157_cov_10.146497	0	0.1	20.7	9.7	0	0	-5.4	0	not assigned.unknown	not assigned.unknown
MSGI1_14182	NODE_24073_length_625_cov_19.556801	1.9	26.3	1.9	8.7	3.8	0	0	0	signalling.receptor kinases.misc	"receptor protein kinase-related contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domain similar to receptor-like protein ki"
MSGI1_115669	NODE_24080_length_82_cov_54.731709	25.2	23	0.7	0	0	0	5.2	5.5	RNA.RNA binding	"RNA recognition motif (RRM)-containing protein  similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G17720.1); similar to RNA-binding re (GB:ABD28433.1); contains InterPro domain Nucleotide-binding, alpha-beta plait;"
MSGI1_68458	NODE_24081_length_186_cov_11.903226	7.2	35.9	27.3	5.3	2.3	-2.4	-1.9	2.8	not assigned.unknown	not assigned.unknown
MSGI1_104004	NODE_24101_length_129_cov_5.387597	0.1	0	12.8	10.3	0	0	-7	0	not assigned.unknown	not assigned.unknown
MSGI1_106849	NODE_24106_length_126_cov_6.769841	0	0	13.5	20.4	0	0	-4.8	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_74764	NODE_2415_length_172_cov_31.319767	32.9	136.7	0.2	0.4	2.1	0	7.4	8.4	RNA.regulation of transcription.C3H zinc finger family	zinc finger (CCCH-type) family protein  similar to CZF1/ZFAR1 [Arabidopsis thaliana] (TAIR:AT2G40140.2); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro
MSGI1_114167	NODE_2416_length_96_cov_89.239586	23.2	94.5	14.6	9.6	2	0	0	3.3	RNA.regulation of transcription.C3H zinc finger family	CZF1/ZFAR1; transcription factor  similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G55980.1); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR0021
MSGI1_59095	NODE_24168_length_212_cov_6.754717	0.1	0.3	15.3	9.2	0	0	-7.3	0	not assigned.unknown	not assigned.unknown
MSGI1_48389	NODE_24197_length_253_cov_15.893281	9.8	17.6	0.2	0	0	0	0	5.1	not assigned.unknown	not assigned.unknown
MSGI1_25613	NODE_2421_length_419_cov_85.389023	105.4	37.8	23.6	36.7	-1.5	0	2.2	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S30 (RPS30C)  Identical to 40S ribosomal protein S30 (RPS30C) [Arabidopsis Thaliana] (GB:P49689;GB:O82203;GB:Q9M0E4); similar to 40S ribosomal protein S30 (RPS30A) [Arabidopsis thaliana] (TAIR:AT2G19750.1); similar to 40S ribosomal p
MSGI1_113626	NODE_24220_length_101_cov_21.108912	11.8	8.1	36.1	6.2	0	-2.5	-1.6	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL1 (BETA GALACTOSIDASE 1); beta-galactosidase beta-galactosidase, glycosyl hydrolase family 35 similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1); similar to BGAL3 (beta-galactosidase 3), beta-galacto"
MSGI1_113626	NODE_24220_length_101_cov_21.108912	11.8	8.1	36.1	6.2	0	-2.5	-1.6	0	"misc.gluco-, galacto- and mannosidases"	"BGAL1 (BETA GALACTOSIDASE 1); beta-galactosidase beta-galactosidase, glycosyl hydrolase family 35 similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1); similar to BGAL3 (beta-galactosidase 3), beta-galacto"
MSGI1_36430	NODE_24237_length_317_cov_22.463722	10	14.2	39.2	19.6	0	0	-2	0	cell wall	"FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to EDA28/MEE23 (embryo sac development arrest 28, maternal effect embryo arrest 23), electron carrier [Arabidopsis"
MSGI1_36430	NODE_24237_length_317_cov_22.463722	10	14.2	39.2	19.6	0	0	-2	0	cell wall	"FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to EDA28/MEE23 (embryo sac development arrest 28, maternal effect embryo arrest 23), electron carrier [Arabidopsis"
MSGI1_36430	NODE_24237_length_317_cov_22.463722	10	14.2	39.2	19.6	0	0	-2	0	secondary metabolism.N misc.alkaloid-like	"FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to EDA28/MEE23 (embryo sac development arrest 28, maternal effect embryo arrest 23), electron carrier [Arabidopsis"
MSGI1_36430	NODE_24237_length_317_cov_22.463722	10	14.2	39.2	19.6	0	0	-2	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to EDA28/MEE23 (embryo sac development arrest 28, maternal effect embryo arrest 23), electron carrier [Arabidopsis"
MSGI1_113338	NODE_24266_length_103_cov_39.126213	14.2	31.5	3	5.2	0	0	0	2.6	not assigned.unknown	not assigned.unknown
MSGI1_4178	NODE_2428_length_1149_cov_39.493473	32.5	42.9	10.2	16.4	0	0	1.7	1.4	not assigned.unknown	not assigned.unknown
MSGI1_112955	NODE_24293_length_106_cov_27.603773	29.5	20	1.5	2.1	0	0	4.3	3.3	transporter.sugars	STP1 (SUGAR TRANSPORTER 1); carbohydrate transporter/ sugar porter Encodes a H+/hexose cotransporter. Identical to Sugar transport protein 1 (Hexose transporter 1) (Glucose transporter) (STP1) [Arabidopsis Thaliana] (GB:P23586;GB:Q56Z12;GB:Q8H775;GB:Q8LB
MSGI1_100435	NODE_24310_length_133_cov_6.894737	6.2	10.6	26	29.7	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_28315	NODE_24324_length_387_cov_7.860465	2.3	2.4	21.9	4.1	0	-2.4	-3.3	0	secondary metabolism.flavonoids.anthocyanins	transferase family protein  similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G01210.1); similar to AER [Nicotiana tabacum] (GB:AAM73656.1); contains InterPro domain Transferase; (InterPro:IPR003480)
MSGI1_94829	NODE_24325_length_140_cov_4.821429	0.9	1.1	13.1	0	0	-4.7	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_19967	NODE_24335_length_505_cov_21.584158	12	28.9	1.8	2.6	0	0	0	3.5	not assigned.unknown	not assigned.unknown
MSGI1_112174	NODE_24371_length_112_cov_9.785714	0	0.1	14.9	18.9	0	0	-4.9	-7.6	cell wall.cellulose synthesis	"ATCSLA09 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 4); transferase, transferring glycosyl groups encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium"
MSGI1_56678	NODE_24381_length_220_cov_15.645454	191.3	25.2	210.1	85.4	-2.9	-1.3	0	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_83685	NODE_24382_length_156_cov_13.397436	0	0	11.9	34.5	0	1.5	-4.6	-6.1	not assigned.unknown	not assigned.unknown
MSGI1_19496	NODE_2440_length_515_cov_56.460194	1.3	2.8	146.7	5.7	0	-4.7	-6.8	0	"RNA.regulation of transcription.CCAAT box binding factor family, HAP3"	CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family  Identical to Nuclear transcription factor Y subunit B-3 (AtNF-YB-3) (Transcriptional activator HAP3C) (NFYB3) [Arabidopsis Thaliana] (GB:O23310); similar to CCAAT-box bindin
MSGI1_73864	NODE_24405_length_174_cov_5.787356	0	0	13.3	5.3	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_110865	NODE_24408_length_122_cov_5.106557	0	0.2	6.1	14.5	0	0	0	-6.2	not assigned.unknown	not assigned.unknown
MSGI1_38730	NODE_24416_length_302_cov_11.049669	6.8	11.1	0	0	0	0	0	4.5	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to ATP binding / protein binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT1G72840.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thalia"
MSGI1_111819	NODE_2442_length_115_cov_297.713043	225.4	139.8	0.3	0	0	0	9.6	8.1	cell.organisation	TUA6 (tubulin alpha-6 chiain) Encodes an alpha-tubulin isoform required for right handed helical growth. Identical to Tubulin alpha-6 chain (TUBA6) [Arabidopsis Thaliana] (GB:P29511); Identical to Tubulin alpha-2/alpha-4 chain (TUBA4) [Arabidopsis Thalia
MSGI1_112547	NODE_24432_length_109_cov_393.981659	109.1	95.2	0.6	0.9	0	0	7.5	6.7	not assigned.unknown	not assigned.unknown
MSGI1_6701	NODE_2444_length_927_cov_32.417477	0.8	0.6	88.3	0.8	0	-6.8	-6.8	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_6701	NODE_2444_length_927_cov_32.417477	0.8	0.6	88.3	0.8	0	-6.8	-6.8	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	"PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / transcription factor/ transcription regulator Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Ac"
MSGI1_6701	NODE_2444_length_927_cov_32.417477	0.8	0.6	88.3	0.8	0	-6.8	-6.8	0	signalling.light	"PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / transcription factor/ transcription regulator Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Ac"
MSGI1_77855	NODE_2445_length_166_cov_17.710844	0	0	33.9	68.8	0	1	-6.1	-7.1	protein.synthesis.misc ribososomal protein	40S ribosomal protein S19 (RPS19C)  Identical to 40S ribosomal protein S19-3 (RPS19C) [Arabidopsis Thaliana] (GB:Q9FNP8); similar to 40S ribosomal protein S19 (RPS19B) [Arabidopsis thaliana] (TAIR:AT5G15520.1); similar to 40S ribosomal protein S19 (RPS19A
MSGI1_62704	NODE_24468_length_201_cov_9.835821	8.3	12.1	31.7	16.1	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_60333	NODE_2449_length_208_cov_11.081731	9.4	15	1.4	0.4	0	0	0	5.2	not assigned.unknown	not assigned.unknown
MSGI1_115668	NODE_24501_length_82_cov_42.878048	22.8	14.1	51.8	19.7	0	-1.4	0	0	protein.degradation	"SCPL48 (serine carboxypeptidase-like 48); serine carboxypeptidase  similar to SCPL47 (serine carboxypeptidase-like 47), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G22980.1); similar to SCPL49 (serine carboxypeptidase-like 49), serine carboxy"
MSGI1_92513	NODE_24505_length_143_cov_6.986014	4	6.9	22.6	6.4	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_102174	NODE_24512_length_131_cov_13.389313	0.2	0.1	32.6	0.5	0	-6	-7.3	0	not assigned.unknown	not assigned.unknown
MSGI1_98737	NODE_24513_length_135_cov_11.325926	0.6	1	22.8	13.6	0	0	-5.2	-3.8	not assigned.unknown	not assigned.unknown
MSGI1_44903	NODE_24525_length_269_cov_16.698885	4.8	3.9	26.6	7	0	-1.9	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_11548	NODE_2453_length_705_cov_22.931915	17.4	8.4	2.4	5	0	0	2.9	0	secondary metabolism.flavonoids.anthocyanins	glycosyltransferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT5G65550.1); similar to putative anthocyanidine rhamnosyl-transferase [Capsicum annuum] (GB:AAM12787.1); contains InterPr
MSGI1_39439	NODE_24549_length_298_cov_11.687920	0.6	5.2	28.3	2.9	0	-3.3	-5.6	0	protein.degradation.ubiquitin.E3.SCF.FBOX	F-box family protein  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G39460.1); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G39480.1); similar to Os08g0105100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060784.1
MSGI1_7331	NODE_2455_length_892_cov_40.563900	29.8	31	109	27.9	0	-2	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_75279	NODE_24551_length_171_cov_9.491228	0	0	21	26.6	0	0	-5.4	-5.7	not assigned.unknown	not assigned.unknown
MSGI1_25443	NODE_24552_length_421_cov_7.703088	2.3	9.9	21.1	11.9	0	0	-3.2	0	transport.misc	"AWPM-19-like membrane family protein  similar to AWPM-19-like membrane family protein [Arabidopsis thaliana] (TAIR:AT1G29520.1); similar to a Lea protein with hydrophobic domain, high pI value (11.6); 15kD protein; putative (GB:AAC37469.1); contains Inte"
MSGI1_31982	NODE_24558_length_351_cov_33.290600	41.5	15.6	25.3	11.3	-1.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_121894	NODE_24566_length_61_cov_41.491802	12.5	16.9	0	0	0	0	4.6	5.1	not assigned.unknown	not assigned.unknown
MSGI1_121893	NODE_24567_length_61_cov_30.032787	17.2	21.9	0	0	0	0	5.1	5.5	not assigned.unknown	not assigned.unknown
MSGI1_64875	NODE_24572_length_195_cov_7.046154	0	0	4	16.8	0	0	0	-5.1	development.unspecified	"plastid developmental protein DAG, putative  similar to plastid developmental protein DAG, putative [Arabidopsis thaliana] (TAIR:AT1G32580.1); similar to putative plastid protein [Oryza sativa (japonica cultivar-group)] (GB:BAC22214.1); similar to OSJNBa"
MSGI1_4261	NODE_24576_length_1139_cov_21.714663	15.8	67.6	22.8	58.7	2.1	1.4	0	0	transport.amino acids	"ProT2 (PROLINE TRANSPORTER 2); amino acid permease Encodes a proline transporter with affinity for gly betaine, proline, and GABA.  Protein is expressed most highly in the roots. similar to ProT1 (PROLINE TRANSPORTER 1) [Arabidopsis thaliana] (TAIR:AT2G3"
MSGI1_66360	NODE_24581_length_191_cov_10.282722	12.3	63.9	14.4	22.6	2.4	0	0	1.5	not assigned.unknown	not assigned.unknown
MSGI1_68455	NODE_24585_length_186_cov_12.306452	0.1	0	18.6	13.6	0	0	-7.5	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_92512	NODE_24588_length_143_cov_11.321678	25.4	29.8	37.4	8.1	0	-2.2	0	1.9	not assigned.unknown	not assigned.unknown
MSGI1_114564	NODE_24588_length_92_cov_9.576087	4.3	8.9	16.9	1	0	-4.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_75278	NODE_24590_length_171_cov_12.035088	12.5	1.9	34	3.2	0	-3.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_62019	NODE_24593_length_203_cov_71.088669	42.8	16.5	9.4	12.9	-1.4	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_70639	NODE_2460_length_181_cov_8.756907	2.9	5.1	18.8	5.6	0	0	-2.7	0	misc.cytochrome P450	"CYP72A11 (cytochrome P450, family 72, subfamily A, polypeptide 11); oxygen binding putative cytochrome P450 similar to CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14690.1); similar t"
MSGI1_105869	NODE_24607_length_127_cov_8.354331	1	0.5	1.8	17.9	0	3.3	0	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_47494	NODE_24610_length_257_cov_20.431906	14.9	41.1	16.8	17.1	1.5	0	0	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_121886	NODE_24611_length_61_cov_24.295082	11.4	7.4	0.4	0	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_73388	NODE_24613_length_175_cov_9.280000	12	4.9	0.4	1.7	0	0	4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_43703	NODE_2462_length_275_cov_12.000000	14.4	6.1	0	0	0	0	4.8	0	cell.organisation	FRA1 (FRAGILE FIBER 1); microtubule motor encodes a kinesin-like protein with an N-terminal microtubule binding motor domain. Protein is localized to the periphery of the cytoplasm and mutants in the gene exhibit altered orientation of cellulose microfib
MSGI1_121884	NODE_2462_length_61_cov_10.639344	0	0	12.4	2.5	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_49981	NODE_24622_length_246_cov_52.272358	57.8	51.3	0.3	0	0	0	7.6	6.7	not assigned.unknown	not assigned.unknown
MSGI1_30293	NODE_2463_length_366_cov_42.240437	45.2	52.5	0.8	0.7	0	0	5.8	6.2	not assigned.unknown	not assigned.unknown
MSGI1_73863	NODE_24631_length_174_cov_116.339081	27.5	51.7	32.1	63.3	0	1	0	0	cell.cycle	ROC3 (rotamase CyP 3); peptidyl-prolyl cis-trans isomerase Encodes cytosolic cyclophilin ROC3. Identical to Peptidyl-prolyl cis-trans isomerase CYP19-1 (EC 5.2.1.8) (PPIase CYP19-1) (Rotamase cyclophilin-3) (Cyclophilin of 19 kDa 1) (CYP19-1) [Arabidopsi
MSGI1_73863	NODE_24631_length_174_cov_116.339081	27.5	51.7	32.1	63.3	0	1	0	0	misc.misc2	ROC3 (rotamase CyP 3); peptidyl-prolyl cis-trans isomerase Encodes cytosolic cyclophilin ROC3. Identical to Peptidyl-prolyl cis-trans isomerase CYP19-1 (EC 5.2.1.8) (PPIase CYP19-1) (Rotamase cyclophilin-3) (Cyclophilin of 19 kDa 1) (CYP19-1) [Arabidopsi
MSGI1_44304	NODE_24631_length_272_cov_6.830883	8.6	10.9	2	0.3	0	0	0	5.2	not assigned.unknown	not assigned.unknown
MSGI1_121883	NODE_24639_length_61_cov_52.557377	35.2	16.2	3.2	10.3	0	0	3.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L17 (RPL17A)  Identical to 60S ribosomal protein L17-1 (RPL17A) [Arabidopsis Thaliana] (GB:Q93VI3;GB:Q9FZJ5); similar to 60S ribosomal protein L17 (RPL17B) [Arabidopsis thaliana] (TAIR:AT1G67430.1); similar to ribosomal protein [Pet
MSGI1_111649	NODE_24642_length_116_cov_30.922413	28.5	0.2	2.8	0.3	-7.2	0	3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_30292	NODE_24644_length_366_cov_20.500000	2.1	2.8	43.9	0.9	0	-5.6	-4.4	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 1); transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Loss of function mutant has abnormally shaped leaves and stems. Identical to Homeobox-leucine zipper protein ATHB-12
MSGI1_121882	NODE_24645_length_61_cov_9.967213	2.6	4.1	18.4	4.1	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_77852	NODE_24651_length_166_cov_9.313253	3.9	2.8	23.6	8.2	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_116929	NODE_24660_length_71_cov_54.323944	2.6	19.3	10	18.7	2.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_115072	NODE_24668_length_87_cov_13.908046	0.9	1.2	20.7	19	0	0	-4.5	-4	not assigned.unknown	not assigned.unknown
MSGI1_53174	NODE_24674_length_233_cov_32.270386	29.2	187.1	60.6	89.9	2.7	0	0	1.1	not assigned.unknown	not assigned.unknown
MSGI1_102172	NODE_24675_length_131_cov_14.671756	3.5	5.8	26.1	8.1	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_7943	NODE_24675_length_859_cov_14.534342	16.8	21.3	3	3.6	0	0	0	2.6	cell wall.cellulose synthesis	"ATCSLA09 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 4); transferase, transferring glycosyl groups encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium"
MSGI1_57871	NODE_24679_length_216_cov_12.069445	8.5	1.9	18.8	1.8	0	-3.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_99560	NODE_24691_length_134_cov_12.432836	12.8	0.4	5.2	0	-5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_68453	NODE_24697_length_186_cov_30.220430	4.4	14.4	26.5	4.1	0	-2.7	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_13826	NODE_2470_length_635_cov_40.754330	41.6	39.4	15.7	35.4	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_62703	NODE_24702_length_201_cov_54.054726	31.7	33.5	0.7	1	0	0	5.5	5.1	not assigned.unknown	not assigned.unknown
MSGI1_102171	NODE_2471_length_131_cov_6.641222	0.1	0	9.9	11	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_55891	NODE_24724_length_223_cov_11.085202	6.4	12.2	32.3	14.6	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_88956	NODE_24727_length_148_cov_55.040539	27.6	0	0.9	0	-5.8	0	4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_108825	NODE_24735_length_124_cov_61.645161	55.8	37.7	204.1	34.4	0	-2.6	-1.9	0	stress.abiotic.drought/salt	ERD4 (EARLY-RESPONSIVE TO DEHYDRATION 4)  similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT1G32090.1); similar to Os07g0150100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058898.1); sim
MSGI1_55603	NODE_24735_length_224_cov_6.084821	1.1	0.7	16.2	8.3	0	0	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_26920	NODE_24737_length_403_cov_9.699752	14.2	0.3	4.6	7.1	-5.6	0	0	0	misc.cytochrome P450	"CYP72A7 (cytochrome P450, family 72, subfamily A, polypeptide 7); oxygen binding putative cytochrome P450 similar to CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14690.1); similar to"
MSGI1_20118	NODE_24739_length_502_cov_34.382469	51.7	27.8	17.4	10.7	0	0	1.6	0	transport.cyclic nucleotide or calcium regulated channels	ATCNGC13 (cyclic nucleotide gated channel 13); calmodulin binding / cyclic nucleotide binding / ion channel member of Cyclic nucleotide gated channel family Identical to Putative cyclic nucleotide-gated ion channel 13 (Cyclic nucleotide- and calmodulin-r
MSGI1_108824	NODE_2474_length_124_cov_106.725807	116.7	93	28.1	81.5	0	1.5	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_67199	NODE_24742_length_189_cov_11.380953	0.2	0.2	28.7	0.2	0	-7.2	-7.2	0	RNA.regulation of transcription.C3H zinc finger family	zinc finger (CCCH-type) family protein  similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT5G44260.1); similar to putative CCCH-type zinc finger transcription factor [Gossypium hirsutum] (GB:AAX20386.1); contains InterPro do
MSGI1_97122	NODE_24743_length_137_cov_13.014599	2.1	7.2	16.9	13.4	0	0	-3	0	cell wall	"protein kinase, putative  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G54380.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G59700.1); similar to protein kinase family protein [Arabidopsis thaliana] ("
MSGI1_97122	NODE_24743_length_137_cov_13.014599	2.1	7.2	16.9	13.4	0	0	-3	0	signalling.receptor kinases.Catharanthus roseus-like RLK1	"protein kinase, putative  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G54380.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G59700.1); similar to protein kinase family protein [Arabidopsis thaliana] ("
MSGI1_12583	NODE_24749_length_671_cov_20.388971	14.6	5.7	1.6	2.2	0	0	3.2	0	PS.lightreaction.photosystem I.PSI polypeptide subunits	"PSAD-1 (photosystem I subunit D-1) Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD1) Identical to Photosystem I reaction center subunit II-1, chloroplast precursor (Photosystem I 2"
MSGI1_20733	NODE_2476_length_489_cov_63.214725	49.7	113.9	0.4	0.5	1.2	0	7	7.8	not assigned.unknown	not assigned.unknown
MSGI1_23466	NODE_24768_length_450_cov_13.271111	3.4	0.2	34.5	0.2	0	-7.4	-3.3	0	cell wall	"peroxidase, putative  Identical to Peroxidase 16 precursor (EC 1.11.1.7) (Atperox P16) (ATP22a) (PER16) [Arabidopsis Thaliana] (GB:Q96518); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G30170.1); similar to Haem peroxidase, plant/funga"
MSGI1_23466	NODE_24768_length_450_cov_13.271111	3.4	0.2	34.5	0.2	0	-7.4	-3.3	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 16 precursor (EC 1.11.1.7) (Atperox P16) (ATP22a) (PER16) [Arabidopsis Thaliana] (GB:Q96518); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G30170.1); similar to Haem peroxidase, plant/funga"
MSGI1_86943	NODE_24786_length_151_cov_5.582781	0	0	9.9	12.1	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_48198	NODE_2479_length_254_cov_22.374016	13.5	32.3	46.8	26.2	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_35489	NODE_24800_length_324_cov_13.537037	2.1	0.8	32.6	0.1	0	-8.3	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_71994	NODE_24802_length_178_cov_11.331461	3	1.4	25.4	2.5	0	-3.3	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_113625	NODE_24815_length_101_cov_82.900993	58.4	17.4	4.2	4	-1.7	0	3.8	0	"misc.oxidases - copper, flavone etc."	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_104908	NODE_24820_length_128_cov_10.539062	15	11.3	1.5	6.9	0	0	3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_95576	NODE_24820_length_139_cov_58.798561	30.8	19.4	9.2	23.6	0	0	1.7	0	nucleotide metabolism.salvage.nucleoside kinases.adenosine kinase	ADK1 (ADENOSINE KINASE 1) Involved in the salvage synthesis of                      adenylates and methyl recycling Identical to Adenosine kinase 1 (EC 2.7.1.20) (AK 1) (Adenosine 5'- phosphotransferase 1) (ADK1) [Arabidopsis Thaliana] (GB:Q9SF85); simil
MSGI1_86942	NODE_24829_length_151_cov_37.079472	41.2	30.1	8	1.7	0	0	2.4	4.1	not assigned.unknown	not assigned.unknown
MSGI1_97120	NODE_24830_length_137_cov_3.985401	0.1	0.1	10.8	8.6	0	0	-6.8	0	not assigned.unknown	not assigned.unknown
MSGI1_88955	NODE_24834_length_148_cov_29.662163	20.3	25.2	81.2	34.8	0	-1.2	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_91784	NODE_24841_length_144_cov_5.958333	4.7	4.8	98.1	2	0	-5.6	-4.4	0	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN1 (DARK INDUCIBLE 6) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumul"
MSGI1_39437	NODE_24847_length_298_cov_81.453018	78.8	39.4	27.3	55.1	0	0	1.5	0	RNA.regulation of transcription.unclassified	"chloroplast nucleoid DNA-binding protein, putative  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G10760.1); similar to CND41, chloroplast nucleoid DNA binding protein [Nicotiana tabacum] (GB:BAA22813.1); contains InterPro d"
MSGI1_45385	NODE_24850_length_267_cov_30.898876	24.3	43.1	16.4	51.9	0	1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_112954	NODE_24851_length_106_cov_32.688679	19.3	35.4	47.6	43.7	0	0	-1.3	0	hormone metabolism.auxin.signal transduction	"amino acid permease, putative  Identical to Auxin transporter-like protein 3 (AUX1-like protein 3) (LAX3) [Arabidopsis Thaliana] (GB:Q9CA25); similar to amino acid permease, putative [Arabidopsis thaliana] (TAIR:AT2G21050.1); similar to amino acid permea"
MSGI1_74760	NODE_24854_length_172_cov_8.203488	0	0	11.9	18.1	0	0	-4.6	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_86215	NODE_2486_length_152_cov_128.986847	80.4	252.2	152.9	82.7	1.6	0	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_50225	NODE_24862_length_245_cov_5.714286	1.1	0.9	15.8	4.4	0	0	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_121863	NODE_24870_length_61_cov_36.196720	24.2	1.3	11.6	3.3	-4.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_25926	NODE_24873_length_415_cov_21.730120	11.8	30.2	45.2	25.4	0	0	-1.9	0	protein.postranslational modification	"protein kinase, putative  similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G40540.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06440.1); contai"
MSGI1_42182	NODE_24881_length_283_cov_15.505301	16.7	16.3	43.4	54.9	0	0	-1.4	-1.8	redox.ascorbate and glutathione.glutathione	"ATGR1; glutathione-disulfide reductase Encodes a cytosolic glutathione reductase. Identical to Glutathione reductase, cytosolic (EC 1.8.1.7) (GR) (GRase) (OBP29) [Arabidopsis Thaliana] (GB:P48641;GB:Q94BM6;GB:Q9C5I4); similar to GR (GLUTATHIONE REDUCTASE"
MSGI1_83681	NODE_24887_length_156_cov_14.173077	2	2.4	30.9	6	0	-2.4	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_14354	NODE_24891_length_620_cov_15.180645	18.5	13.3	0.1	0.1	0	0	7.5	7.1	redox.ascorbate and glutathione.glutathione	"GSH2 (GLUTATHIONE SYNTHETASE 2); glutathione synthase Encodes a protein with similarity to glutathione synthetases, which catalyzes one of the early steps in glutathione biosynthesis. Two transcripts have been detected; the longer transcript is less abun"
MSGI1_30542	NODE_249_length_364_cov_67.629120	2.4	55.1	4.7	64.6	4.5	3.8	0	0	amino acid metabolism.synthesis.glutamate family.arginine.arginosuccinate synthase	"arginosuccinate synthase family  Identical to Argininosuccinate synthase, chloroplast precursor (EC 6.3.4.5) (Citrulline--aspartate ligase) [Arabidopsis Thaliana] (GB:Q9SZX3;GB:Q8VZ47); similar to Ar (GB:ABE78918.1); similar to Os12g0235800 [Oryza sativa"
MSGI1_56676	NODE_24900_length_220_cov_41.318180	23.7	77.8	51.5	25.3	1.7	0	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_68859	NODE_24901_length_185_cov_36.886486	38.2	55	57.7	120.4	0	1.1	0	-1.1	not assigned.unknown	not assigned.unknown
MSGI1_100429	NODE_24904_length_133_cov_38.954887	80.5	23.4	16.8	28.4	-1.8	0	2.3	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_100429	NODE_24904_length_133_cov_38.954887	80.5	23.4	16.8	28.4	-1.8	0	2.3	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_12014	NODE_24906_length_689_cov_48.582005	43	28.3	90.1	8.8	0	-3.4	-1.1	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1)"
MSGI1_12014	NODE_24906_length_689_cov_48.582005	43	28.3	90.1	8.8	0	-3.4	-1.1	0	"misc.gluco-, galacto- and mannosidases"	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1)"
MSGI1_38602	NODE_24912_length_303_cov_17.498350	25.4	20.2	0	0	0	0	5.7	5.3	not assigned.unknown	not assigned.unknown
MSGI1_63092	NODE_24914_length_200_cov_11.975000	0	0	27.9	16.1	0	0	-5.8	-5	not assigned.unknown	not assigned.unknown
MSGI1_72928	NODE_24920_length_176_cov_9.852273	3.1	2	14.2	18.7	0	0	0	-3.2	not assigned.unknown	not assigned.unknown
MSGI1_8543	NODE_24921_length_829_cov_15.177322	0.6	13.7	2.1	9.3	4.5	0	0	0	RNA.processing.ribonucleases	RNase H domain-containing protein  similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); con
MSGI1_45626	NODE_24931_length_266_cov_17.345865	12.6	17.8	4.7	3.2	0	0	0	2.5	hormone metabolism.auxin.signal transduction	"PIN3 (PIN-FORMED 3); auxin:hydrogen symporter/ transporter A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 local"
MSGI1_121856	NODE_24937_length_61_cov_21.377048	4.7	4.5	16	32.5	0	0	0	-2.9	misc.misc2	dienelactone hydrolase family protein  similar to dienelactone hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G35420.1); similar to Predicted hydrolase related to dienelactone hydrolase (ISS) [Ostreococcus tauri] (GB:CAL50216.1); similar to Os01
MSGI1_121854	NODE_2496_length_61_cov_26.147541	11.9	19.1	0	0	0	0	4.6	5.3	amino acid metabolism.synthesis.aromatic aa.phenylalanine and tyrosine.chorismate mutase	"CM1 (chorismate mutase 1); chorismate mutase L-ascorbate peroxidase Identical to Chorismate mutase, chloroplast precursor (EC 5.4.99.5) (CM-1) (CM1) [Arabidopsis Thaliana] (GB:P42738;GB:Q9LS75;GB:Q9SUJ5); similar to CM3 (CHORISMATE MUTASE 3), chorismate"
MSGI1_12522	NODE_24962_length_673_cov_14.112927	10.2	17.1	49.8	3.9	0	-3.7	-2.3	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY40 (WRKY DNA-binding protein 40); transcription factor Pathogen-induced transcription factor. Binds W-box sequences  in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more suscept
MSGI1_25925	NODE_24964_length_415_cov_24.756626	4.6	28.8	20	40.2	2.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_114333	NODE_24964_length_94_cov_95.606384	49.4	80.8	154.1	179.6	0	0	-1.6	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_121853	NODE_24967_length_61_cov_44.803280	23.9	14.9	38.7	5.4	0	-2.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_112782	NODE_24970_length_107_cov_50.607475	63	41.2	90.6	92.9	0	0	0	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_23511	NODE_24978_length_449_cov_22.567928	29.8	0.6	0	0	-5.6	0	5.9	0	not assigned.unknown	not assigned.unknown
MSGI1_110859	NODE_24986_length_122_cov_47.655739	49.1	60.2	0.8	0.3	0	0	5.9	7.6	not assigned.unknown	not assigned.unknown
MSGI1_56421	NODE_24990_length_221_cov_27.276018	30.2	37.6	2.4	1.2	0	0	3.7	5	not assigned.unknown	not assigned.unknown
MSGI1_57530	NODE_24994_length_217_cov_9.732718	4.7	10.9	0.2	0	0	0	0	4.4	not assigned.unknown	not assigned.unknown
MSGI1_79499	NODE_24997_length_163_cov_48.000000	48.2	10.8	0.7	0	-2.2	0	6.1	4.4	cell wall.modification	"ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A10) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to Expan"
MSGI1_53474	NODE_24998_length_232_cov_18.672413	63.5	12	26.9	28.7	-2.4	0	1.2	0	redox.peroxiredoxin	"peroxiredoxin Q, putative encodes periredoxin Q which decomposes peroxides and plays a role in the protection of the photosynthetic apparatus similar to 2-cys peroxiredoxin, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT5G06290.1); similar to pero"
MSGI1_65235	NODE_25_length_194_cov_13.180412	7.8	10.3	59.7	12.8	0	-2.2	-2.9	0	transport.amino acids	amino acid transporter family protein  similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT2G39130.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABE77592.1); contains InterPro domain Amino acid/p
MSGI1_121851	NODE_2500_length_61_cov_44.409836	38.4	27.1	11.6	20.6	0	0	1.7	0	amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoglycerate dehydrogenase	"D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative  similar to PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE), phosphoglycerate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G17745.1); similar to EDA9 (embryo sac development arrest 9), NAD binding"
MSGI1_80096	NODE_25006_length_162_cov_17.259260	0	0.1	37.1	5	0	-2.9	-6.2	0	not assigned.unknown	not assigned.unknown
MSGI1_75790	NODE_25034_length_170_cov_41.629414	55.9	41.5	25.5	48.7	0	0	1.1	0	protein.aa activation.threonine-tRNA ligase	"threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)  Identical to Threonyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.3) (Threonine--tRNA ligase) (ThrRS) (THRRS) [Arabidopsis Thaliana] (GB:O04630;GB:O81907;GB:Q84TG4;GB:Q94AG0); similar to t"
MSGI1_87585	NODE_25036_length_150_cov_20.206667	0.2	19.8	0	0.2	6.6	0	0	6.6	amino acid metabolism.synthesis.glutamate family.arginine.arginosuccinate synthase	"arginosuccinate synthase family  Identical to Argininosuccinate synthase, chloroplast precursor (EC 6.3.4.5) (Citrulline--aspartate ligase) [Arabidopsis Thaliana] (GB:Q9SZX3;GB:Q8VZ47); similar to Ar (GB:ABE78918.1); similar to Os12g0235800 [Oryza sativa"
MSGI1_50224	NODE_25046_length_245_cov_22.873470	28	17.5	1.7	1.5	0	0	4	3.5	not assigned.unknown	not assigned.unknown
MSGI1_117083	NODE_25053_length_70_cov_51.557144	17.9	12.9	3	8.1	0	0	2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_84320	NODE_25057_length_155_cov_15.187097	36.8	13.3	7.9	12.5	-1.5	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_121848	NODE_25061_length_61_cov_36.737705	102.9	22.3	59.8	38.3	-2.2	0	0	0	cell wall.pectin*esterases.acetyl esterase	"pectinacetylesterase family protein  similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT4G19410.1); similar to pectinacetylesterase precursor [Vigna radiata var. radiata] (GB:CAA67728.1); contains InterPro domain Pectinacetylesteras"
MSGI1_121847	NODE_25074_length_61_cov_45.655739	30.8	9.3	30.3	32.9	-1.7	0	0	-1.8	PS.lightreaction.photosystem I.PSI polypeptide subunits	"TMP14 (THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA) Encodes the P subunit of Photosystem I. About 25% of the TMP14 pool appeared to be phosphorylated, and this ratio is not affected by light. Contains seven phosphorylation sites on threonine residue and"
MSGI1_69317	NODE_25093_length_184_cov_6.586957	0.5	0.6	7.7	11.6	0	0	0	-4.3	not assigned.unknown	not assigned.unknown
MSGI1_49476	NODE_25094_length_248_cov_4.830645	3.6	0.2	13.2	1.1	0	-3.6	0	0	secondary metabolism.N misc.alkaloid-like	"tyrosine decarboxylase, putative  Identical to Tyrosine decarboxylase 1 (EC 4.1.1.25) (ELI5) [Arabidopsis Thaliana] (GB:Q8RY79;GB:Q9SK68;GB:Q9SMY2;GB:Q9SMY3); similar to tyrosine decarboxylase, putative [Arabidopsis thaliana] (TAIR:AT4G28680.1); similar"
MSGI1_49476	NODE_25094_length_248_cov_4.830645	3.6	0.2	13.2	1.1	0	-3.6	0	0	amino acid metabolism.degradation.aromatic aa.tyrosine	"tyrosine decarboxylase, putative  Identical to Tyrosine decarboxylase 1 (EC 4.1.1.25) (ELI5) [Arabidopsis Thaliana] (GB:Q8RY79;GB:Q9SK68;GB:Q9SMY2;GB:Q9SMY3); similar to tyrosine decarboxylase, putative [Arabidopsis thaliana] (TAIR:AT4G28680.1); similar"
MSGI1_83067	NODE_25096_length_157_cov_20.203821	30.4	8.7	1.6	1.4	-1.8	0	4.2	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_83067	NODE_25096_length_157_cov_20.203821	30.4	8.7	1.6	1.4	-1.8	0	4.2	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_103102	NODE_25097_length_130_cov_16.015385	4.9	7.1	40.7	7.6	0	-2.4	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_60331	NODE_25098_length_208_cov_45.788460	5.7	23.7	24.2	31.7	2.1	0	-2.1	0	misc.dynamin	dynamin family protein  similar to dynamin family protein [Arabidopsis thaliana] (TAIR:AT1G60500.1); similar to Dynamin central re (GB:ABE80642.1); contains InterPro domain Dynamin; (InterPro:IPR001401)
MSGI1_106836	NODE_25101_length_126_cov_3.539683	11	3.6	0.5	4.6	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_108822	NODE_25107_length_124_cov_10.911290	0	0	18.1	47.9	0	1.4	-5.2	-6.6	not assigned.unknown	not assigned.unknown
MSGI1_84973	NODE_25111_length_154_cov_10.844156	1.6	6.2	2.5	15.6	0	2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_68449	NODE_25117_length_186_cov_19.376345	29.2	14.7	5.1	6.9	0	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_116195	NODE_25121_length_77_cov_5.623377	0	0.6	13.8	8.4	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_33561	NODE_25126_length_338_cov_29.035503	11.7	35.1	4.5	6	1.6	0	0	2.5	cell wall	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_33561	NODE_25126_length_338_cov_29.035503	11.7	35.1	4.5	6	1.6	0	0	2.5	"misc.oxidases - copper, flavone etc."	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_108821	NODE_25130_length_124_cov_4.854839	0.9	0.4	2.4	10.6	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_115762	NODE_2514_length_81_cov_358.049377	46.7	55.2	67.9	28.3	0	-1.3	0	0	cell.organisation	"ANNAT1 (ANNEXIN ARABIDOPSIS 1); calcium ion binding / calcium-dependent phospholipid binding Encodes a member of the annexin gene family, a diverse, multigene family of calcium-dependent, membrane-binding proteins. The protein was determined to have pero"
MSGI1_115761	NODE_25158_length_81_cov_39.827160	20.9	90.8	156.5	155.5	2.1	0	-2.9	0	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN1 (DARK INDUCIBLE 6) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumul"
MSGI1_62016	NODE_25188_length_203_cov_9.270936	11.2	20.8	0	0	0	0	4.5	5.4	not assigned.unknown	not assigned.unknown
MSGI1_86213	NODE_25198_length_152_cov_12.598684	13.3	11.8	0	0	0	0	4.7	4.6	not assigned.unknown	not assigned.unknown
MSGI1_121836	NODE_25211_length_61_cov_17.885246	10.8	4.5	0	0	0	0	4.4	0	stress.abiotic.heat	"MTHSC70-1 (mitochondrial heat shock protein 70-1); ATP binding / unfolded protein binding  similar to mtHSC70-2 (HEAT SHOCK PROTEIN 70), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G09590.1); similar to CPHSC70-1 (chloroplast h"
MSGI1_96370	NODE_25213_length_138_cov_27.173914	13.1	38.6	30.3	31	1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_64533	NODE_25225_length_196_cov_17.969387	23.5	6.5	1.3	2.5	0	0	4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_78900	NODE_25229_length_164_cov_43.725609	47.9	23.3	17.1	18.7	0	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_25924	NODE_25236_length_415_cov_8.171084	12.9	2.8	0.8	1.1	0	0	4	0	not assigned.unknown	not assigned.unknown
MSGI1_36273	NODE_25237_length_318_cov_33.726414	28.9	7	33.2	5	-2	-2.7	0	0	transport.cyclic nucleotide or calcium regulated channels	"DND1 (DEFENSE NO DEATH 1); calmodulin binding / cation channel/ cyclic nucleotide binding / inward rectifier potassium channel 'defense, no death' gene (DND1) encodes a mutated cyclic nucleotide-gated cation channel; Same as CNGC2 (article ID 229): Cycli"
MSGI1_113049	NODE_25242_length_105_cov_15.028571	3.8	11.1	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_50450	NODE_25245_length_244_cov_21.360655	17.7	4.7	30.5	9	0	-1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_80697	NODE_25249_length_161_cov_11.167702	0.8	25.7	35.3	14.7	5	0	-5.5	0	not assigned.unknown	not assigned.unknown
MSGI1_40137	NODE_2526_length_294_cov_60.520409	41	68.6	18.9	47	0	1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_19237	NODE_2526_length_519_cov_47.531792	33	33.4	0.2	0	0	0	7.4	6.1	not assigned.unknown	not assigned.unknown
MSGI1_115492	NODE_25261_length_83_cov_52.084339	23.6	37.5	7.1	11.9	0	0	0	1.7	not assigned.unknown	not assigned.unknown
MSGI1_86937	NODE_25262_length_151_cov_13.662251	0	0	18.8	37.4	0	0	-5.2	-6.2	not assigned.unknown	not assigned.unknown
MSGI1_14426	NODE_25266_length_618_cov_10.131068	7.2	34.8	5.8	21.2	2.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_16377	NODE_25274_length_570_cov_19.164913	7.7	12.4	41	20.8	0	0	-2.4	0	cell wall	PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. Identical to Hevein-like protein precursor (HE
MSGI1_16377	NODE_25274_length_570_cov_19.164913	7.7	12.4	41	20.8	0	0	-2.4	0	stress.biotic	PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. Identical to Hevein-like protein precursor (HE
MSGI1_10354	NODE_25275_length_748_cov_44.982620	20.4	17.3	0.4	0.6	0	0	5.7	4.8	not assigned.unknown	not assigned.unknown
MSGI1_51382	NODE_25283_length_240_cov_5.895833	0.2	0.1	6.6	15.3	0	0	0	-7.3	stress.biotic	"DOGT1 (DON-GLUCOSYLTRANSFERASE); UDP-glycosyltransferase/ transferase, transferring glycosyl groups Encodes a DON-Glucosyltransferase.  The UGT73C5 glucosylates both brassinolide and castasterone in the 23-O position. The enzyme is presumably involved in"
MSGI1_51382	NODE_25283_length_240_cov_5.895833	0.2	0.1	6.6	15.3	0	0	0	-7.3	hormone metabolism.brassinosteroid.synthesis-degradation.sterols.other	"DOGT1 (DON-GLUCOSYLTRANSFERASE); UDP-glycosyltransferase/ transferase, transferring glycosyl groups Encodes a DON-Glucosyltransferase.  The UGT73C5 glucosylates both brassinolide and castasterone in the 23-O position. The enzyme is presumably involved in"
MSGI1_51382	NODE_25283_length_240_cov_5.895833	0.2	0.1	6.6	15.3	0	0	0	-7.3	hormone metabolism.cytokinin.synthesis-degradation	"DOGT1 (DON-GLUCOSYLTRANSFERASE); UDP-glycosyltransferase/ transferase, transferring glycosyl groups Encodes a DON-Glucosyltransferase.  The UGT73C5 glucosylates both brassinolide and castasterone in the 23-O position. The enzyme is presumably involved in"
MSGI1_117861	NODE_25293_length_64_cov_19.062500	14	14.2	0.4	0.4	0	0	5.1	5.1	not assigned.unknown	not assigned.unknown
MSGI1_81256	NODE_25303_length_160_cov_24.250000	15.5	11.6	63.6	10.7	0	-2.6	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_32877	NODE_25304_length_343_cov_20.819242	9.3	3.8	33.7	9.4	0	-1.8	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_41232	NODE_25308_length_288_cov_122.628471	43.5	25.5	7.5	11.3	0	0	2.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L17 (RPL17B)  Identical to 60S ribosomal protein L17-2 (RPL17B) [Arabidopsis Thaliana] (GB:P51413;GB:O64803); similar to 60S ribosomal protein L17 (RPL17A) [Arabidopsis thaliana] (TAIR:AT1G27400.1); similar to ribosomal protein [Pet
MSGI1_117998	NODE_25328_length_63_cov_87.333336	34.5	21.4	0	0	0	0	6.1	5.4	not assigned.unknown	not assigned.unknown
MSGI1_14103	NODE_25334_length_627_cov_13.677831	2.2	17.3	1.4	7.6	3	0	0	0	lipid metabolism.FA synthesis and FA elongation.beta ketoacyl CoA synthase	beta-ketoacyl-CoA synthase family protein  Identical to 3-ketoacyl-CoA synthase 12 precursor (EC 2.3.1.-) (KCS-12) (Very-long- chain fatty acid condensing enzyme 12) (VLCFA condensing enzyme 12) (KCS12) [Arabidopsis Thaliana] (GB:Q9SIB2;GB:Q8LFQ0); simil
MSGI1_110849	NODE_25336_length_122_cov_8.688524	0	0	19.4	18.1	0	0	-5.3	-5.2	signalling.receptor kinases.leucine rich repeat I	"kinase  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G67720.1); similar to leucine-rich repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95578.2);"
MSGI1_86935	NODE_25341_length_151_cov_12.384106	4.4	3.8	26.8	10.2	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_53985	NODE_25350_length_230_cov_4.095652	0.4	0	11	9.3	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_4589	NODE_25352_length_1102_cov_19.629765	23.1	2.2	20.8	3.1	-3.4	-2.7	0	0	lipid metabolism.FA synthesis and FA elongation.long chain fatty acid CoA ligase	"LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2) Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. similar to long-chain-fatty-acid--CoA ligase, putative / long-"
MSGI1_45155	NODE_2536_length_268_cov_57.929104	18.8	20.9	57.8	39.7	0	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_70634	NODE_25364_length_181_cov_58.441990	10.2	36.1	12	6.2	1.8	0	0	2.5	not assigned.unknown	not assigned.unknown
MSGI1_35332	NODE_25365_length_325_cov_9.400000	0	0	13.2	24.4	0	0	-4.7	-5.6	not assigned.unknown	not assigned.unknown
MSGI1_11302	NODE_25365_length_713_cov_16.147264	6.8	22.4	1.5	1.4	0	0	0	4	signalling.receptor kinases.DUF 26	"protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23150.1); similar to CRK10 (CYSTEINE-RICH RLK10), kinase [Arabidopsis thaliana] (TAIR:AT4G23180.1); similar to CRK6 (CYSTEINE-RICH RLK 6), kinase [Ar"
MSGI1_116552	NODE_25366_length_74_cov_32.864864	9.8	26.5	29.2	224.6	0	2.9	0	-3.1	not assigned.unknown	not assigned.unknown
MSGI1_107829	NODE_25394_length_125_cov_27.591999	28.9	8.9	22.7	11	-1.7	0	0	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 52 precursor (EC 1.11.1.7) (Atperox P52) (ATP49) (PER52) [Arabidopsis Thaliana] (GB:Q9FLC0); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to Peroxidase P7 (TP7) (GB:P0043"
MSGI1_107829	NODE_25394_length_125_cov_27.591999	28.9	8.9	22.7	11	-1.7	0	0	0	cell wall	"peroxidase, putative  Identical to Peroxidase 52 precursor (EC 1.11.1.7) (Atperox P52) (ATP49) (PER52) [Arabidopsis Thaliana] (GB:Q9FLC0); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to Peroxidase P7 (TP7) (GB:P0043"
MSGI1_45154	NODE_25396_length_268_cov_16.555969	0.3	0.3	47.3	0.3	0	-7.3	-7.3	0	not assigned.unknown	not assigned.unknown
MSGI1_76266	NODE_25398_length_169_cov_18.757397	27.5	47.4	7.6	9.8	0	0	1.9	2.3	transport.amino acids	amino acid transporter family protein  similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT5G38820.1); similar to Os06g0633800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058132.1); similar to putative N system amino ac
MSGI1_101341	NODE_2540_length_132_cov_161.363632	121.1	42.8	53.3	102.1	-1.5	0	1.2	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_73862	NODE_25400_length_174_cov_8.304598	0	0	18	26.5	0	0	-5.2	-5.7	not assigned.unknown	not assigned.unknown
MSGI1_102163	NODE_25405_length_131_cov_8.931297	8.9	3.1	16.7	2.6	0	-2.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_40136	NODE_25410_length_294_cov_4.857143	5.8	3.4	127.8	1	0	-7	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_56955	NODE_25414_length_219_cov_23.018265	13.9	64.9	39.5	71.1	2.2	0	-1.5	0	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN2 (ASPARAGINE SYNTHETASE 2); asparagine synthase (glutamine-hydrolyzing) Encodes asparagine synthetase (ASN2). similar to ASN1 (DARK INDUCIBLE 6) [Arabidopsis thaliana] (TAIR:AT3G47340.1); similar to ASN3 (ASPARAGINE SYNTHETASE 3), asparagine synthase"
MSGI1_89625	NODE_25416_length_147_cov_10.904762	0.1	0.1	15.7	8.2	0	0	-7.3	0	PS.lightreaction.cytochrome b6/f	"cytochrome b6f complex subunit (petM), putative  similar to unknown [Euphorbia esula] (GB:AAF34768.1); contains InterPro domain PetM of cytochrome b6f complex subunit 7; (InterPro:IPR012595)"
MSGI1_64532	NODE_25421_length_196_cov_27.943878	12.3	9.2	29.6	8.4	0	-1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_96365	NODE_25422_length_138_cov_36.500000	7.4	5.9	19.8	30.5	0	0	0	-2.4	RNA.regulation of transcription.Aux/IAA family	IAA16 (indoleacetic acid-induced protein 16); transcription factor early auxin-induced (IAA16) Identical to Auxin-responsive protein IAA16 (Indoleacetic acid-induced protein 16) (IAA16) [Arabidopsis Thaliana] (GB:O24407); similar to IAA7 (AUXIN RESISTANT
MSGI1_96365	NODE_25422_length_138_cov_36.500000	7.4	5.9	19.8	30.5	0	0	0	-2.4	hormone metabolism.auxin.induced-regulated-responsive-activated	IAA16 (indoleacetic acid-induced protein 16); transcription factor early auxin-induced (IAA16) Identical to Auxin-responsive protein IAA16 (Indoleacetic acid-induced protein 16) (IAA16) [Arabidopsis Thaliana] (GB:O24407); similar to IAA7 (AUXIN RESISTANT
MSGI1_49045	NODE_25427_length_250_cov_9.932000	6.6	42.6	0	0	2.7	0	0	6.4	not assigned.unknown	not assigned.unknown
MSGI1_24950	NODE_2543_length_428_cov_24.712616	20.9	18.1	56	15.9	0	-1.8	-1.4	0	protein.degradation.cysteine protease	"RD19 (RESPONSIVE TO DEHYDRATION 19); cysteine-type peptidase Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Identical to Cysteine proteinase RD19a precursor (EC 3.4.22.-) (RD19) (RD19A) [Arabidopsis Thaliana] (GB:P43296);"
MSGI1_121829	NODE_25431_length_61_cov_64.819672	32.8	31.6	0	0	0	0	6	6	misc.plastocyanin-like	ARPN (PLANTACYANIN); copper ion binding Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil. Identical to Putative basic blue protein precursor (Plantacyanin)
MSGI1_84968	NODE_25445_length_154_cov_11.201299	1.8	2.1	23.7	1.6	0	-3.9	-3.7	0	signalling.receptor kinases.DUF 26	"protein kinase family protein  similar to EMB1290 (EMBRYO DEFECTIVE 1290), kinase [Arabidopsis thaliana] (TAIR:AT4G23250.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11530.1); similar to protein kinase family protein [Ara"
MSGI1_84968	NODE_25445_length_154_cov_11.201299	1.8	2.1	23.7	1.6	0	-3.9	-3.7	0	cell wall	"protein kinase family protein  similar to EMB1290 (EMBRYO DEFECTIVE 1290), kinase [Arabidopsis thaliana] (TAIR:AT4G23250.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11530.1); similar to protein kinase family protein [Ara"
MSGI1_76809	NODE_25463_length_168_cov_6.452381	0	0	18.7	22.6	0	0	-5.2	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_11131	NODE_25463_length_719_cov_8.877607	10.9	44.6	7.2	16	2	0	0	1.5	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_11131	NODE_25463_length_719_cov_8.877607	10.9	44.6	7.2	16	2	0	0	1.5	development.unspecified	"nodulin, putative  similar to nodulin, putative [Arabidopsis thaliana] (TAIR:AT3G43630.1); similar to H0701F11.2 [Oryza sativa (indica cultivar-group)] (GB:CAJ86136.1); contains InterPro domain Protein of unknown function DUF125, transmembrane; (InterPro"
MSGI1_22789	NODE_25464_length_459_cov_44.470589	29.4	107.2	111.4	19.9	1.9	-2.5	-1.9	2.4	not assigned.unknown	not assigned.unknown
MSGI1_121827	NODE_25465_length_61_cov_19.655737	11.9	7.9	3.2	19.8	0	2.6	0	0	major CHO metabolism.degradation.starch.starch cleavage	AMY3/ATAMY3 (ALPHA-AMYLASE-LIKE 3); alpha-amylase Encodes a plastid-localized &#945;-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation.  Expression follows circadi
MSGI1_102161	NODE_25486_length_131_cov_6.763359	0	0	4.6	15.1	0	0	0	-4.9	Co-factor and vitamine metabolism.molybdenum cofactor	CNX5 (SIRTINOL RESISTANT 1); Mo-molybdopterin cofactor sulfurase putative molybdopterin synthase sulphurylase (cnx5) Identical to Molybdenum cofactor synthesis protein 3 (Molybdopterin synthase sulfurylase) (MPT synthase sulfurylase) (CNX5) [Arabidopsis T
MSGI1_30114	NODE_25486_length_368_cov_10.820652	15.7	25	144.7	8.3	0	-4.1	-3.2	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"DIN10 (DARK INDUCIBLE 10); hydrolase, hydrolyzing O-glycosyl compounds encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. In"
MSGI1_29527	NODE_25487_length_374_cov_11.374331	7.4	0.9	27.8	3.8	0	-2.9	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_50677	NODE_25490_length_243_cov_10.761317	1.1	3.5	2.4	17.3	0	2.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_14060	NODE_25511_length_628_cov_13.014331	12	23.5	38.8	22	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_121824	NODE_25513_length_61_cov_42.983608	12.3	8.5	64.6	11.9	0	-2.4	-2.4	0	major CHO metabolism.degradation.starch.starch cleavage	"BMY7/TR-BAMY (beta-amylase 7); beta-amylase  similar to CT-BMY (BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to beta-amylase 1 [Nicotiana langsdorffii x Nicotiana sanderae] (GB:AAY89374.1); similar to putative chloropl"
MSGI1_77847	NODE_25515_length_166_cov_3.795181	4.3	4.4	31.3	17.3	0	0	-2.9	0	protein.postranslational modification	"PHOT2 (NON PHOTOTROPIC HYPOCOTYL 1-LIKE); kinase Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-i"
MSGI1_121823	NODE_25516_length_61_cov_40.196720	32.6	15.1	41.1	14	0	-1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_103097	NODE_25517_length_130_cov_8.369231	1.1	1	17.8	17.6	0	0	-4	-4.1	not assigned.unknown	not assigned.unknown
MSGI1_23624	NODE_2552_length_447_cov_214.655487	139.7	33.5	51.3	181.4	-2.1	1.8	1.4	-2.4	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase, putative  similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to LOX1 (Lipoxygenase 1), lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G55020.1); similar to lipoxygenase, putati"
MSGI1_76808	NODE_25528_length_168_cov_85.059525	63	30.6	15.7	18.2	-1	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_94821	NODE_25529_length_140_cov_17.978571	16.3	41.6	72.3	25	1.4	-1.5	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_46503	NODE_2554_length_262_cov_33.118320	22	7.1	29.7	7.6	0	-2	0	0	development.late embryogenesis abundant	late embryogenesis abundant family protein / LEA family protein  similar to LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) [Arabidopsis thaliana] (TAIR:AT1G01470.1); similar to Os03g0843300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051862.1); similar to
MSGI1_48196	NODE_25551_length_254_cov_14.744095	17.8	25.6	0	0	0	0	5.2	5.7	RNA.transcription	SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor Encodes a specialized sigma factor in chloroplasts and is responsible for the light-dependent transcription at the psbD LRP. similar to S
MSGI1_99551	NODE_25557_length_134_cov_5.208955	0.2	1.1	13.4	0.3	0	-5.5	-6.1	0	not assigned.unknown	not assigned.unknown
MSGI1_113336	NODE_2556_length_103_cov_128.524277	111.1	31.5	16.4	17.5	-1.8	0	2.8	0	redox.peroxiredoxin	"2-cys peroxiredoxin, chloroplast, putative  similar to 2-cys peroxiredoxin, chloroplast (BAS1) [Arabidopsis thaliana] (TAIR:AT3G11630.1); similar to 2-Cys peroxiredoxin [Brassica napus] (GB:AAG30570.1); contains InterPro domain Thioredoxin-like fold; (In"
MSGI1_26469	NODE_25567_length_408_cov_15.843137	0	0	27	22.9	0	0	-5.8	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_76265	NODE_25573_length_169_cov_10.952662	11.8	8.9	0	0	0	0	4.6	0	protein.targeting.chloroplast	TOC75-III (translocon outer membrane complex 75-III); protein translocase Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloro
MSGI1_73860	NODE_25589_length_174_cov_4.850574	0.8	2.1	13.5	12	0	0	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_57868	NODE_25595_length_216_cov_10.657408	1.4	4.7	14.7	17.4	0	0	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_121821	NODE_25596_length_61_cov_20.704918	12.3	7.7	0	0	0	0	4.6	0	nucleotide metabolism.salvage.nucleoside kinases.adenosine kinase	ADK1 (ADENOSINE KINASE 1) Involved in the salvage synthesis of                      adenylates and methyl recycling Identical to Adenosine kinase 1 (EC 2.7.1.20) (AK 1) (Adenosine 5'- phosphotransferase 1) (ADK1) [Arabidopsis Thaliana] (GB:Q9SF85); simil
MSGI1_89624	NODE_25601_length_147_cov_14.938775	34.4	11.7	3	6.3	-1.6	0	3.5	0	nucleotide metabolism.deoxynucleotide metabolism.ribonucleoside-diphosphate reductase	TSO2 (TSO2); ribonucleoside-diphosphate reductase Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in
MSGI1_3534	NODE_25606_length_1239_cov_38.121067	25.3	7.4	4.9	6.1	0	0	2.4	0	cell wall	"SKS5 (SKU5 Similar 5); copper ion binding / oxidoreductase  similar to SKS6 (SKU5 Similar 6), pectinesterase [Arabidopsis thaliana] (TAIR:AT1G41830.1); similar to SKS8 (SKU5 Similar 8), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1"
MSGI1_118162	NODE_25626_length_62_cov_83.016129	47.7	22.6	17.8	15.5	0	0	1.4	0	PS.calvin cyle.FBPase	"fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative  Identical to Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D- fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase)"
MSGI1_111816	NODE_25630_length_115_cov_37.504349	1.6	13.1	81.8	73	0	0	-5.7	-2.5	not assigned.unknown	not assigned.unknown
MSGI1_107825	NODE_25655_length_125_cov_5.992000	0	0	5.5	13.7	0	0	0	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_38424	NODE_25656_length_304_cov_71.305923	42.4	66.3	35.3	30.4	0	0	0	1.1	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G33170.1); similar to receptor-like protein kinase [Nicotiana tabacum] (GB:BAC07504.2); cont"
MSGI1_38424	NODE_25656_length_304_cov_71.305923	42.4	66.3	35.3	30.4	0	0	0	1.1	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G33170.1); similar to receptor-like protein kinase [Nicotiana tabacum] (GB:BAC07504.2); cont"
MSGI1_44111	NODE_25660_length_273_cov_60.150185	33.9	15.1	11.8	12.3	0	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_62330	NODE_25662_length_202_cov_11.207921	12.5	13.3	0.7	0.4	0	0	4.2	5.1	protein.targeting.secretory pathway.golgi	"transport protein, putative  similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT4G14160.2); similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT1G05520.1); similar to transport protein, putative [Arabidopsis thaliana]"
MSGI1_105862	NODE_25666_length_127_cov_7.519685	7	18.6	4.1	19.2	0	2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_42181	NODE_25674_length_283_cov_42.144875	40.5	34.4	15.8	19.1	0	0	1.4	0	redox.ascorbate and glutathione.glutathione	"ATGR1; glutathione-disulfide reductase Encodes a cytosolic glutathione reductase. Identical to Glutathione reductase, cytosolic (EC 1.8.1.7) (GR) (GRase) (OBP29) [Arabidopsis Thaliana] (GB:P48641;GB:Q94BM6;GB:Q9C5I4); similar to GR (GLUTATHIONE REDUCTASE"
MSGI1_111471	NODE_25675_length_118_cov_75.033897	48.7	27	20.2	13.8	0	0	1.3	0	PS.calvin cyle.FBPase	"fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative  Identical to Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D- fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase)"
MSGI1_30647	NODE_2568_length_363_cov_126.355370	8.7	18.7	174	166.3	0	0	-4.3	-3.2	stress.abiotic.heat	ATJ3 (Arabidopsis thaliana DnaJ homologue 3) homologous to the co-chaperon DNAJ protein from E coli Identical to Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) (ATJ3) [Arabidopsis Thaliana] (GB:Q94AW8;GB:O22663;GB:Q42530); similar to ATJ2 (Arabidopsis thaliana
MSGI1_30647	NODE_2568_length_363_cov_126.355370	8.7	18.7	174	166.3	0	0	-4.3	-3.2	RNA.regulation of transcription.C2H2 zinc finger family	DNAJ heat shock N-terminal domain-containing protein  similar to DNAJ heat shock N-terminal domain-containing protein / cell division protein-related [Arabidopsis thaliana] (TAIR:AT3G11450.1); similar to DnaJ domain containing protein [Tetrahymena thermo
MSGI1_115202	NODE_25689_length_86_cov_18.755814	20	15.8	0	0	0	0	5.3	5	not assigned.unknown	not assigned.unknown
MSGI1_91054	NODE_25701_length_145_cov_8.055172	9.3	12.5	0	0	0	0	0	4.6	protein.targeting.nucleus	"cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative  Identical to Importin-alpha re-exporter (Cellular apoptosis susceptibility protein homolog) (CAS) [Arabidopsis Thaliana] (GB:Q9ZPY7;GB:Q56WE2;GB:Q7GA14); similar"
MSGI1_91054	NODE_25701_length_145_cov_8.055172	9.3	12.5	0	0	0	0	0	4.6	stress.biotic	"cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative  Identical to Importin-alpha re-exporter (Cellular apoptosis susceptibility protein homolog) (CAS) [Arabidopsis Thaliana] (GB:Q9ZPY7;GB:Q56WE2;GB:Q7GA14); similar"
MSGI1_9604	NODE_25703_length_778_cov_13.111825	0.9	3.2	36.8	5.2	0	-2.8	-5.4	0	not assigned.unknown	not assigned.unknown
MSGI1_121812	NODE_25706_length_61_cov_35.983608	21.4	14.2	0	0	0	0	5.4	4.8	amino acid metabolism.synthesis.branched chain group.common	"ketol-acid reductoisomerase  Identical to Ketol-acid reductoisomerase, chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) [Arabidopsis Thaliana] (GB:Q05758;GB:Q42559); similar to Ketol"
MSGI1_71100	NODE_25708_length_180_cov_14.833333	3.6	14.5	0	0	0	0	0	4.9	not assigned.unknown	not assigned.unknown
MSGI1_32553	NODE_25709_length_346_cov_17.468208	27.1	2.5	5	3.2	-3.4	0	2.4	0	"misc.gluco-, galacto- and mannosidases"	"BGLU46; hydrolase, hydrolyzing O-glycosyl compounds  similar to BGLU45, hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G61810.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE77795.1); contains InterP"
MSGI1_116412	NODE_2571_length_75_cov_81.906670	1	1.5	30.8	1.8	0	-4.1	-4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_71495	NODE_25711_length_179_cov_13.000000	17.3	0	4.3	1.9	-5.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_109818	NODE_25725_length_123_cov_44.138210	50.8	3.2	10	24.5	-4	0	2.3	-2.9	cell wall.degradation.pectate lyases and polygalacturonases	JP630; polygalacturonase Encodes aromatic rich glycoprotein JP630. Identical to Probable polygalacturonase non-catalytic subunit JP630 precursor (Aromatic-rich glycoprotein JP630) (JP630) [Arabidopsis Thaliana] (GB:P92982;GB:Q9S9K5); similar to BURP doma
MSGI1_76264	NODE_2573_length_169_cov_17.852072	1.7	2.4	20.3	21.4	0	0	-3.6	-3.2	not assigned.unknown	not assigned.unknown
MSGI1_40870	NODE_25735_length_290_cov_10.851724	0.1	1.2	28.5	0.3	0	-6.6	-8.2	0	protein.degradation.metalloprotease	ATFTSH6/FTSH6 (FtsH protease 6); ATP-dependent peptidase/ ATPase/ metallopeptidase/ peptidase/ zinc ion binding Encodes an FtsH protease that is localized to the chloroplast. AtFtsH6 is involved in the degradation of both Lhcb3 and Lhcb1 during senescenc
MSGI1_38090	NODE_25735_length_306_cov_30.169935	22.3	23.2	11.3	5.6	0	0	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_41061	NODE_25744_length_289_cov_13.287197	5	8.9	37.3	10.6	0	-1.8	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_46881	NODE_25746_length_260_cov_11.296154	0.1	0.1	27	10	0	0	-8.1	0	not assigned.unknown	not assigned.unknown
MSGI1_53749	NODE_25753_length_231_cov_22.246754	1.2	0.5	49.1	1	0	-5.6	-5.4	0	"metal handling.binding, chelation and storage"	"aminotransferase, putative encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment similar to aminotransferase-related [Arabidopsis thaliana] (TAIR:AT5G36160.1); similar to tyrosine aminotransferase [Glycine max] ("
MSGI1_121806	NODE_25762_length_61_cov_26.393442	17.3	20.3	0	0	0	0	5.1	5.3	not assigned.unknown	not assigned.unknown
MSGI1_49293	NODE_25766_length_249_cov_25.305222	17.7	46.6	27.7	36	1.4	0	0	0	transport.peptides and oligopeptides	"ATOPT5 (oligopeptide transporter 5); oligopeptide transporter oligopeptide transporter Identical to Oligopeptide transporter 5 (AtOPT5) (OPT5) [Arabidopsis Thaliana] (GB:Q9SUA4); similar to ATOPT2 (oligopeptide transporter 2), oligopeptide transporter [A"
MSGI1_40682	NODE_25771_length_291_cov_13.336770	14.4	95.3	19.2	99.7	2.7	2.4	0	0	development.storage proteins	cupin family protein  similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT1G07750.1); similar to legumin-like protein [Zea mays] (GB:AAO63625.1); similar to Os05g0116000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054469.1); similar to
MSGI1_83062	NODE_2578_length_157_cov_5.012739	20.4	4.2	17.6	12.4	-2.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_65230	NODE_25787_length_194_cov_25.721649	13.2	27.5	37.7	26.1	0	0	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_88949	NODE_258_length_148_cov_224.263519	93.2	114.4	26.7	47.5	0	0	1.8	1.3	not assigned.unknown	not assigned.unknown
MSGI1_43927	NODE_25812_length_274_cov_7.536496	3.9	3.5	21.1	4	0	-2.4	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_115665	NODE_25814_length_82_cov_107.939026	87.5	52.8	42.9	62.3	0	0	1	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L7A (RPL7aA)  Identical to 60S ribosomal protein L7a-1 (RPL7AA) [Arabidopsis Thaliana] (GB:P49692;GB:O22250); similar to 60S ribosomal protein L7A (RPL7aB) [Arabidopsis thaliana] (TAIR:AT3G62870.1); similar to 60S ribosomal protein L
MSGI1_30940	NODE_25819_length_360_cov_54.133335	37.1	41.9	15.8	14.4	0	0	0	1.5	hormone metabolism.auxin.induced-regulated-responsive-activated	AXR3 (AUXIN RESISTANT 3); transcription factor Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha al
MSGI1_30940	NODE_25819_length_360_cov_54.133335	37.1	41.9	15.8	14.4	0	0	0	1.5	RNA.regulation of transcription.Aux/IAA family	AXR3 (AUXIN RESISTANT 3); transcription factor Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha al
MSGI1_65229	NODE_25820_length_194_cov_16.917526	34.3	9.4	4.2	12.4	-1.9	0	3	0	not assigned.unknown	not assigned.unknown
MSGI1_90322	NODE_25830_length_146_cov_81.876709	46.2	19.3	9.2	8.7	-1.3	0	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_79492	NODE_25831_length_163_cov_59.245399	21.8	16.9	0.2	0.2	0	0	6.8	6.4	protein.synthesis.misc ribososomal protein	40S ribosomal protein S17 (RPS17A)  Identical to 40S ribosomal protein S17-1 (RPS17A) [Arabidopsis Thaliana] (GB:P49205;GB:Q9SJD0); similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT5G04800.4); similar to 40S ribosomal protein S
MSGI1_26919	NODE_25841_length_403_cov_9.930521	2.4	4.9	25.3	6.3	0	-2	-3.4	0	DNA.synthesis/chromatin structure	transducin family protein / WD-40 repeat family protein  similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G49450.1); similar to WD-40 repeat family protein [Musa acuminata] (GB:ABF70017.1); contains InterP
MSGI1_100417	NODE_25847_length_133_cov_8.240602	11.5	2.1	9	18.3	0	0	0	-3.1	not assigned.unknown	not assigned.unknown
MSGI1_20952	NODE_2585_length_485_cov_32.358765	20	9.4	2.7	7.7	0	0	2.9	0	misc.UDP glucosyl and glucoronyl transferases	"UGT73B5 (UDP-glucosyl transferase 73B5); UDP-glycosyltransferase/ transferase, transferring glycosyl groups  similar to UGT73B4, UDP-glycosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G15490.1); similar to UGT7"
MSGI1_49292	NODE_25864_length_249_cov_7.092370	22.2	37	8.4	27.1	0	1.7	0	0	amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase	GAD (Glutamate decarboxylase 1); calmodulin binding Encodes one of two isoforms of glutamate decarboxylase. Identical to Glutamate decarboxylase 1 (EC 4.1.1.15) (GAD 1) (GAD1) [Arabidopsis Thaliana] (GB:Q42521;GB:Q9FFH9); similar to glutamate decarboxyla
MSGI1_121799	NODE_25889_length_61_cov_24.081966	14.5	16.7	0	0	0	0	4.9	5.1	DNA.synthesis/chromatin structure	"DEAD/DEAH box helicase, putative (RH15)  Identical to DEAD-box ATP-dependent RNA helicase 56 (EC 3.6.1.-) (RH56) [Arabidopsis Thaliana] (GB:Q9LFN6;GB:Q93VJ8); Identical to DEAD-box ATP-dependent RNA helicase 15 (EC 3.6.1.-) (RH15) [Arabidopsis Thaliana]"
MSGI1_66351	NODE_259_length_191_cov_59.607330	321.3	165.2	84.7	84.4	0	0	1.9	0	cell.organisation	TUA6 (tubulin alpha-6 chiain) Encodes an alpha-tubulin isoform required for right handed helical growth. Identical to Tubulin alpha-6 chain (TUBA6) [Arabidopsis Thaliana] (GB:P29511); Identical to Tubulin alpha-2/alpha-4 chain (TUBA4) [Arabidopsis Thalia
MSGI1_98728	NODE_25904_length_135_cov_21.192593	6.1	9.7	24.5	18.7	0	0	-2	0	cell wall.modification	"XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2); hydrolase, acting on glycosyl bonds member of Glycoside Hydrolase Family 16 Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 28 precursor (EC 2.4.1.207) (At-XTH28) (XTH-28) (XTH28)"
MSGI1_76807	NODE_25907_length_168_cov_5.089286	0	0	30.8	12.5	0	0	-5.9	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_74321	NODE_25910_length_173_cov_6.763006	1.3	0.8	14.1	3.4	0	0	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_83060	NODE_25916_length_157_cov_8.993630	4.6	29.3	32.1	17.7	2.7	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_94817	NODE_25918_length_140_cov_8.114285	2.5	0.8	21.3	1.7	0	-3.6	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_40867	NODE_2592_length_290_cov_24.713793	29.1	2.4	12.9	1.4	-3.6	0	0	0	lipid metabolism.Phospholipid synthesis	ATGPAT6/GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase Encodes a protein with glycerol-3-phosphate acyltransferase activity. Identical to Glycerol-3-phosphate acyltransferase 6 (EC 2.3.1.15)
MSGI1_58779	NODE_2593_length_213_cov_255.727707	126.4	94.7	50.3	115.8	0	1.2	1.3	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L17 (RPL17A)  Identical to 60S ribosomal protein L17-1 (RPL17A) [Arabidopsis Thaliana] (GB:Q93VI3;GB:Q9FZJ5); similar to 60S ribosomal protein L17 (RPL17B) [Arabidopsis thaliana] (TAIR:AT1G67430.1); similar to ribosomal protein [Pet
MSGI1_97945	NODE_25936_length_136_cov_8.183824	0	0	7.6	16.3	0	0	0	-5	cell wall.precursor synthesis	"DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101); intramolecular transferase, phosphotransferases encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes). Identical to Pho"
MSGI1_31860	NODE_25951_length_352_cov_15.036932	20.5	3.7	12.2	5.1	-2.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_121796	NODE_25955_length_61_cov_48.213116	161.9	77.8	35.5	61.4	-1.1	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_76263	NODE_25958_length_169_cov_30.023668	0.6	2.9	65.1	2.2	0	-4.9	-6.8	0	not assigned.unknown	not assigned.unknown
MSGI1_108812	NODE_25970_length_124_cov_10.395162	9.2	6.7	10.5	26	0	0	0	-2	not assigned.unknown	not assigned.unknown
MSGI1_45151	NODE_25977_length_268_cov_23.395523	7.2	29.1	64.1	35.4	2	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_121795	NODE_25985_length_61_cov_13.229508	0	0	15.6	5.4	0	0	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_20020	NODE_2599_length_504_cov_40.940475	9.1	7.7	36.9	17.2	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_81809	NODE_25990_length_159_cov_6.012578	0.2	0.3	11.7	0.5	0	-4.5	-5.9	0	cell wall	"glycosyl hydrolase family 9 protein  Identical to Endoglucanase 20 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 20) [Arabidopsis Thaliana] (GB:Q9SUS0); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT4G09740.1); similar t"
MSGI1_55597	NODE_25997_length_224_cov_51.446430	30.8	27.6	10.2	19.9	0	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_82428	NODE_260_length_158_cov_4.405063	0	0	13.8	10.1	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_61304	NODE_26001_length_205_cov_20.102440	13.9	6.8	0	0	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_79488	NODE_26004_length_163_cov_5.736197	0	0.3	10.9	13.2	0	0	0	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_18054	NODE_26006_length_537_cov_11.504656	2.2	8.9	23.6	26.7	0	0	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_14425	NODE_26007_length_618_cov_12.512945	10.4	11.1	25.7	39.5	0	0	0	-1.8	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G04790.1); similar to zinc finger family protein, putative, expressed [Oryza sativa (japonica cultivar-gro"
MSGI1_40524	NODE_26013_length_292_cov_6.619863	0.1	0.2	15.5	8.9	0	0	-7.3	0	not assigned.unknown	not assigned.unknown
MSGI1_72915	NODE_26016_length_176_cov_10.767045	0	0.3	11.1	19.3	0	0	0	-6	not assigned.unknown	not assigned.unknown
MSGI1_31502	NODE_26034_length_355_cov_29.650703	18.1	19.6	49.5	14	0	-1.8	-1.5	0	hormone metabolism.cytokinin.signal transduction	"AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2. similar to WOL (CYTOKININ RESPONSE 1) [Arabidopsis"
MSGI1_117437	NODE_26037_length_67_cov_17.223881	0	0	11.4	16.5	0	0	-4.5	-5	RNA.RNA binding	RNA recognition motif (RRM)-containing protein  similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G33470.2); similar to Os01g0876800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044971.1); similar to Os01g095
MSGI1_50217	NODE_2604_length_245_cov_8.444898	0	0.1	12	5.7	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_23884	NODE_2604_length_442_cov_119.131218	92.1	62.8	45.8	68.4	0	0	1	0	transport.misc	"protein transport protein sec61, putative  similar to protein transport protein sec61, putative [Arabidopsis thaliana] (TAIR:AT1G78720.1); similar to protein translocase [Arabidopsis thaliana] (TAIR:AT2G34250.2); similar to putative integral membrane pro"
MSGI1_121789	NODE_26061_length_61_cov_18.590164	58.9	78	23.1	22.2	0	0	1.4	1.8	minor CHO metabolism.myo-inositol.InsP Synthases	"MI-1-P SYNTHASE (Myo-inositol-1-phosphate synthase); inositol-3-phosphate synthase Columbia myo-inositol-1-phosphate synthase mRNA, complete Identical to Inositol-3-phosphate synthase isozyme 1 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 1) (MI-1-P"
MSGI1_44683	NODE_26077_length_270_cov_18.455555	11.7	26.5	0	0	0	0	4.5	5.7	not assigned.unknown	not assigned.unknown
MSGI1_84310	NODE_26078_length_155_cov_6.509677	3.9	3.8	204.8	9.3	0	-4.5	-5.7	0	amino acid metabolism.degradation.aspartate family.methionine.methionine gamma-lyase	"ATMGL; catalytic/ methionine gamma-lyase Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methio"
MSGI1_76261	NODE_26078_length_169_cov_8.360947	55.3	19	8.2	15.1	-1.5	0	2.8	0	RNA.regulation of transcription.unclassified	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT1G01300.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japoni
MSGI1_29696	NODE_2608_length_372_cov_63.413979	74.6	1.4	0	0	-5.7	0	7.2	0	not assigned.unknown	not assigned.unknown
MSGI1_100413	NODE_26081_length_133_cov_7.180451	2.2	2.6	16.3	3.4	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_109812	NODE_26082_length_123_cov_7.105691	0.7	4.5	17.7	4.4	0	0	-4.7	0	"misc.oxidases - copper, flavone etc."	"monooxygenase, putative (MO3)  similar to monooxygenase, putative (MO2) [Arabidopsis thaliana] (TAIR:AT4G38540.1); similar to monooxygenase [Solanum tuberosum] (GB:BAC23045.1); similar to Os03g0154100 [Oryza sativa (japonica cultivar-group)] (GB:NP_00104"
MSGI1_117226	NODE_26097_length_69_cov_199.043472	96.1	47.8	24.3	38.3	-1	0	2	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	ELI3-1 (ELICITOR-ACTIVATED GENE 3); oxidoreductase/ zinc ion binding Encodes a putative mannitol dehydrogenase. Identical to Probable mannitol dehydrogenase 1 (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase 1) (ELI3-1) [Arabidopsis Thaliana] (GB:Q02
MSGI1_68051	NODE_26106_length_187_cov_13.417112	0	0	14.1	15.3	0	0	-4.8	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_97941	NODE_26107_length_136_cov_26.375000	2.2	25.9	2.2	12.2	3.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_54815	NODE_26108_length_227_cov_9.171806	0	0	20.9	7.3	0	0	-5.4	0	not assigned.unknown	not assigned.unknown
MSGI1_47489	NODE_26114_length_257_cov_9.782102	1.4	3.6	10.7	31.3	0	1.5	0	-3.1	not assigned.unknown	not assigned.unknown
MSGI1_109811	NODE_2612_length_123_cov_78.398376	24.5	8.4	63.3	14.7	0	-2.1	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_27842	NODE_26121_length_392_cov_54.839287	35.6	38.4	28.5	57.4	0	1	0	0	protein.degradation.subtilases	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to SLP2 (subtilisin-like serine protease 2), subtilase [Arabidopsis th"
MSGI1_16926	NODE_2613_length_559_cov_15.488372	5.4	1.9	41.7	5.1	0	-3	-2.9	0	misc.acid and other phosphatases	"ATPAP27/PAP27 (purple acid phosphatase 27); acid phosphatase/ protein serine/threonine phosphatase  similar to ATPAP24/PAP24 (purple acid phosphatase 24), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT4G24890.1); s"
MSGI1_40003	NODE_26135_length_295_cov_8.803390	6.8	3.6	19.5	3.4	0	-2.5	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	"auxin-responsive protein, putative  similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G21210.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12778.1); contains InterPro domain Auxin responsive SAUR prot"
MSGI1_117320	NODE_26137_length_68_cov_41.220589	0	0.2	20	31.6	0	0	-5.3	-7.3	not assigned.unknown	not assigned.unknown
MSGI1_104899	NODE_26138_length_128_cov_4.820312	1.2	0.2	4.6	13	0	0	0	-6	nucleotide metabolism.degradation	inosine-uridine preferring nucleoside hydrolase family protein  similar to inosine-uridine preferring nucleoside hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G18890.1); similar to putative inosine-uridine preferring nucleoside hydrolase [Oryza
MSGI1_71098	NODE_26139_length_180_cov_6.722222	0.5	12.2	1.6	7.1	4.6	0	0	0	DNA.unspecified	"zinc knuckle (CCHC-type) family protein  similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01050.1); similar to Zinc finger, CCHC-type; Endonuclease/exonuclease/phosphatase [Medicago truncatula] (GB:ABE79649.1); contains"
MSGI1_60614	NODE_26139_length_207_cov_21.792271	26.2	19.3	5.4	17.4	0	0	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_115201	NODE_26139_length_86_cov_11.197675	0	0	17.6	7.5	0	0	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_56671	NODE_26148_length_220_cov_23.549999	2.8	14.2	0.5	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_32876	NODE_26164_length_343_cov_23.530613	28.7	25.1	3.4	7.7	0	0	3.1	0	cell wall.degradation.pectate lyases and polygalacturonases	"PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding polygalacturonase inhibiting protein 1 (PGIP1) mRNA, Identical to Polygalacturonase inhibitor 1 precursor (Polygalacturonase-inhibiting protein) (PGIP-1) (PGIP1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_113497	NODE_26173_length_102_cov_53.803921	36.6	22.4	12.3	30.6	0	0	1.6	0	protein.synthesis.elongation	"LOS1 (Low expression of osmotically responsive genes 1); translation elongation factor/ translation factor, nucleic acid binding encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene s"
MSGI1_69749	NODE_26176_length_183_cov_14.546448	4.3	5.4	22.1	4.1	0	-2.4	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_71097	NODE_26184_length_180_cov_27.788889	18.3	107.8	63.2	147.2	2.6	1.2	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_40522	NODE_26189_length_292_cov_25.428082	29.8	23.8	184.9	14.6	0	-3.7	-2.6	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1)"
MSGI1_40522	NODE_26189_length_292_cov_25.428082	29.8	23.8	184.9	14.6	0	-3.7	-2.6	0	"misc.gluco-, galacto- and mannosidases"	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1)"
MSGI1_33559	NODE_2619_length_338_cov_62.544380	28.6	35.6	1.6	1	0	0	4.2	5.2	protein.folding	ATTCP-1 (Arabidopsis thaliana T-complex protein 1 alpha subunit); ATP binding / protein binding / unfolded protein binding Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). Identical to T-complex protein
MSGI1_80088	NODE_26191_length_162_cov_6.703704	7.4	31.7	36.9	29.3	2.1	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_72914	NODE_26194_length_176_cov_5.460227	0.1	0.2	17.9	9.5	0	0	-7.5	0	not assigned.unknown	not assigned.unknown
MSGI1_65226	NODE_2620_length_194_cov_25.994844	0	0	57.1	7.9	0	-2.9	-6.8	0	not assigned.unknown	not assigned.unknown
MSGI1_114045	NODE_2620_length_97_cov_123.505157	101.9	1	20.4	0	-6.7	-5.4	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_101330	NODE_26205_length_132_cov_21.795454	17.9	9.5	2.5	1.3	0	0	2.8	0	DNA.synthesis/chromatin structure.histone	"histone H2B, putative  Identical to Histone H2B.10 (HTB2) [Arabidopsis Thaliana] (GB:Q9FFC0;GB:Q96516); similar to histone H2B, putative [Arabidopsis thaliana] (TAIR:AT3G46030.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold;"
MSGI1_50920	NODE_26207_length_242_cov_17.355371	13.3	48.9	37.7	19.6	1.9	0	-1.5	1.3	hormone metabolism.ethylene.induced-regulated-responsive-activated	"ATMBF1C/MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator.  May serve as a brid"
MSGI1_50920	NODE_26207_length_242_cov_17.355371	13.3	48.9	37.7	19.6	1.9	0	-1.5	1.3	RNA.regulation of transcription.unclassified	"ATMBF1C/MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator.  May serve as a brid"
MSGI1_51379	NODE_2621_length_240_cov_50.483334	45.6	0.6	25.5	0	-6.2	-5.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_61299	NODE_26210_length_205_cov_11.843903	4.6	4.4	23.7	5.3	0	-2.2	-2.4	0	protein.synthesis.mito/plastid ribosomal protein.unknown	"30S ribosomal protein, putative  similar to chloroplast-specific ribosomal protein [Lycopersicon esculentum] (GB:AAU03364.1); contains InterPro domain Rudiment single hybrid motif; (InterPro:IPR011054); contains InterPro domain Sigma 54 modulation protei"
MSGI1_113622	NODE_26216_length_101_cov_31.782179	14.6	9.6	51.2	9	0	-2.5	-1.8	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL1 (BETA GALACTOSIDASE 1); beta-galactosidase beta-galactosidase, glycosyl hydrolase family 35 similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1); similar to BGAL3 (beta-galactosidase 3), beta-galacto"
MSGI1_113622	NODE_26216_length_101_cov_31.782179	14.6	9.6	51.2	9	0	-2.5	-1.8	0	"misc.gluco-, galacto- and mannosidases"	"BGAL1 (BETA GALACTOSIDASE 1); beta-galactosidase beta-galactosidase, glycosyl hydrolase family 35 similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1); similar to BGAL3 (beta-galactosidase 3), beta-galacto"
MSGI1_91774	NODE_26219_length_144_cov_4.868055	0	0	14.2	10.5	0	0	-4.8	0	DNA.synthesis/chromatin structure	tRNA-splicing endonuclease positive effector-related  similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:AT5G37150.1); similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:A
MSGI1_54814	NODE_2624_length_227_cov_20.537445	42.1	33.1	14.8	20.5	0	0	1.5	0	stress.abiotic.heat	"heat shock protein 70, putative / HSP70, putative  similar to HSP91 (Heat shock protein 91) [Arabidopsis thaliana] (TAIR:AT1G79930.2); similar to ATP binding [Arabidopsis thaliana] (TAIR:AT1G11660.2); similar to 97 kDa heat shock protein (Heat shock prot"
MSGI1_22484	NODE_26250_length_463_cov_57.408207	33.4	43.4	72.8	36.4	0	0	-1.1	0	transport.calcium	"ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8); calcium-transporting ATPase/ calmodulin binding Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the"
MSGI1_86926	NODE_26267_length_151_cov_13.867550	0	0	23.4	0.2	0	-6.9	-5.5	0	not assigned.unknown	not assigned.unknown
MSGI1_71095	NODE_26269_length_180_cov_6.427778	8.6	17.1	30.1	11	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_78367	NODE_26271_length_165_cov_16.557575	15	70.3	34.9	63.3	2.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_112949	NODE_26276_length_106_cov_29.575472	21.8	35.5	71.6	45.8	0	0	-1.7	0	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS8 (Arabidopsis thaliana trehalose phosphatase/synthase 8); transferase, transferring glycosyl groups Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose"
MSGI1_65976	NODE_26285_length_192_cov_6.322917	4.2	12.6	17.6	2.8	0	-2.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_75785	NODE_26291_length_170_cov_6.929412	0	0	15.8	0.9	0	-4.1	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_26093	NODE_26300_length_413_cov_32.159805	26.5	110.9	63.1	15.4	2.1	-2	-1.3	2.8	not assigned.unknown	not assigned.unknown
MSGI1_121782	NODE_26300_length_61_cov_62.098362	17	15.1	41.9	77.4	0	0	0	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_117697	NODE_26301_length_65_cov_39.061539	3.3	2.3	37.5	28.3	0	0	-3.5	-3.6	stress.abiotic.heat	"HSP91 (Heat shock protein 91) encodes high molecular weight heat shock protein 70 not a HSP90 homolog, mRNA is constitutively expressed but transiently induced after heat shock similar to heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT1G1166"
MSGI1_112948	NODE_26304_length_106_cov_169.735855	135	0.4	6.7	0.3	-8.4	0	4.3	0	cell wall.pectin*esterases.PME	"pectin methylesterase, putative  similar to pectin methylesterase, putative [Arabidopsis thaliana] (TAIR:AT1G11590.1); similar to pectin methylesterase [Sesbania rostrata] (GB:CAD29733.1); contains InterPro domain Virulence factor, pectin lyase fold; (In"
MSGI1_67611	NODE_26307_length_188_cov_29.664894	19.7	32.6	27.3	58.3	0	1.1	0	0	protein.degradation.subtilases	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_92501	NODE_2631_length_143_cov_53.965034	49.6	55.2	17.4	27.8	0	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_33036	NODE_26312_length_342_cov_13.821637	18.9	22.4	7.3	3.6	0	0	0	2.6	not assigned.unknown	not assigned.unknown
MSGI1_80086	NODE_26316_length_162_cov_9.746914	0	0	8.5	20.9	0	0	0	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_30830	NODE_26324_length_361_cov_8.060942	9.2	28.8	3.8	1.9	0	0	0	3.9	not assigned.unknown	not assigned.unknown
MSGI1_23726	NODE_26329_length_445_cov_8.204494	3.7	2.8	21.1	6.1	0	0	-2.5	0	lipid metabolism.FA synthesis and FA elongation.acyl coa ligase	"AMP-binding protein, putative  similar to AMP-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G16340.1); similar to AMP-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G75960.1); similar to AMP-binding protein, putative [Arabidopsis t"
MSGI1_31733	NODE_26331_length_353_cov_8.926346	1.6	2.4	15.9	8.8	0	0	-3.3	0	RNA.RNA binding	RNA recognition motif (RRM)-containing protein  similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G13224.2); similar to Os02g0221500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046322.1); similar to putative
MSGI1_68445	NODE_26333_length_186_cov_14.768817	4.3	7.2	36.7	13.6	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_77256	NODE_26337_length_167_cov_92.760483	118.9	269.7	175.1	269.3	1.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_40002	NODE_26347_length_295_cov_12.081356	0.6	3.3	16.1	14.8	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_92500	NODE_26349_length_143_cov_6.020979	0.9	1.4	13.8	8.1	0	0	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_58450	NODE_26350_length_214_cov_8.341122	6.6	2.6	30.4	4.2	0	-2.9	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_55886	NODE_26359_length_223_cov_33.121075	35.9	54.3	30.6	59.8	0	1	0	0	RNA.regulation of transcription.C2H2 zinc finger family	"ZFN1 (ZINC FINGER PROTEIN 1); nucleic acid binding Encodes a zinc finger protein. Identical to Zinc finger CCCH domain-containing protein ZFN1 (ZFN1) [Arabidopsis Thaliana] (GB:Q8GXX7;GB:Q9M8S4;GB:Q9XFB8); similar to ZFN3 (ZINC FINGER PROTEIN 3), nucleic"
MSGI1_121780	NODE_2636_length_61_cov_90.147537	44.2	3.4	0	0	-3.7	0	6.5	0	cell wall.modification	"ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Ide"
MSGI1_54813	NODE_26369_length_227_cov_9.427313	2.1	1.7	15	14.6	0	0	0	-3.1	not assigned.unknown	not assigned.unknown
MSGI1_75783	NODE_2637_length_170_cov_394.629425	151	14.8	19.8	18.5	-3.4	0	2.9	0	cell wall.modification	"ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Ide"
MSGI1_74754	NODE_2637_length_172_cov_5.366279	0.7	0.1	11.9	1.1	0	0	-4.1	0	misc.GDSL-motif lipase	"GLIP5 (GDSL-motif lipase 5); carboxylic ester hydrolase Contains lipase signature motif and GDSL domain. similar to GLIP1 (GDSL LIPASE1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT5G40990.1); similar to lipase SIL1 [Brassica rapa subsp. p"
MSGI1_83671	NODE_26371_length_156_cov_11.160256	49.5	13.9	11.9	8.8	-1.8	0	2.1	0	cell wall	"glycosyl hydrolase family 17 protein  similar to hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT4G26830.1); similar to elicitor inducible beta-1,3-glucanase NtEIG-E76 [Nicotiana tabacum] (GB:BAB17320.1); similar to beta-1,3-gl"
MSGI1_18516	NODE_26371_length_530_cov_19.379246	23.1	1.1	1.6	0	-4.4	0	3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_102155	NODE_26374_length_131_cov_45.671757	27.9	34.2	67	52.2	0	0	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_106825	NODE_26377_length_126_cov_13.214286	0.5	0.4	5.7	26.3	0	2.2	0	-6	cell wall	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14067.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_106825	NODE_26377_length_126_cov_13.214286	0.5	0.4	5.7	26.3	0	2.2	0	-6	protein.degradation.subtilases	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14067.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_82425	NODE_2638_length_158_cov_5.822785	0.6	0.2	14.7	15.8	0	0	-4.6	-6.3	not assigned.unknown	not assigned.unknown
MSGI1_60005	NODE_26391_length_209_cov_6.846890	0	0	16.4	10.8	0	0	-5	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_121776	NODE_26392_length_61_cov_29.475410	17.5	42.8	3.2	11.1	1.3	0	2.5	1.9	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase	NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) chloroplast-targeted member of a family of  enzymes similar to nine-cis-epoxycarotenoid dioxygenase similar to NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5) [Arabidopsis thaliana] (TAIR:AT1G30100.1); similar
MSGI1_49290	NODE_26404_length_249_cov_10.421687	0.7	0.6	13.6	20.6	0	0	-4.3	-5.1	misc.UDP glucosyl and glucoronyl transferases	"UGT73B1 (UDP-glucosyl transferase 73B1); UDP-glycosyltransferase/ abscisic acid glucosyltransferase  similar to UGT73B2, UDP-glucosyltransferase/ UDP-glycosyltransferase/ flavonol 3-O-glucosyltransferase [Arabidopsis thaliana] (TAIR:AT4G34135.1); similar"
MSGI1_32673	NODE_26405_length_345_cov_10.249275	2.7	4.1	20.2	12.7	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_22052	NODE_26416_length_469_cov_10.191897	5.5	10.5	24.4	11	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_92498	NODE_26418_length_143_cov_61.790211	26.4	2.3	18.6	2	-3.5	-3.2	0	0	stress.abiotic.cold	RCI2B (RARE-COLD-INDUCIBLE 2B)  Identical to Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B) (RCI2B) [Arabidopsis Thaliana] (GB:Q9ZNS6;GB:Q9M9K9); similar to RCI2A (RARE-COLD-INDUCIBLE 2A) [Arabidopsis thaliana] (TAIR:AT3G05
MSGI1_92498	NODE_26418_length_143_cov_61.790211	26.4	2.3	18.6	2	-3.5	-3.2	0	0	stress.abiotic.drought/salt	RCI2B (RARE-COLD-INDUCIBLE 2B)  Identical to Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B) (RCI2B) [Arabidopsis Thaliana] (GB:Q9ZNS6;GB:Q9M9K9); similar to RCI2A (RARE-COLD-INDUCIBLE 2A) [Arabidopsis thaliana] (TAIR:AT3G05
MSGI1_86209	NODE_26439_length_152_cov_5.493421	3.9	8.7	21.2	13	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_33955	NODE_2644_length_335_cov_35.155224	26.5	4.4	9.9	6.9	-2.6	0	0	0	cell wall	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_33955	NODE_2644_length_335_cov_35.155224	26.5	4.4	9.9	6.9	-2.6	0	0	0	cell wall	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_33955	NODE_2644_length_335_cov_35.155224	26.5	4.4	9.9	6.9	-2.6	0	0	0	"misc.gluco-, galacto- and mannosidases"	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_33955	NODE_2644_length_335_cov_35.155224	26.5	4.4	9.9	6.9	-2.6	0	0	0	major CHO metabolism.degradation.starch.starch cleavage	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_95559	NODE_26444_length_139_cov_65.107910	63	33.2	0.2	0	0	0	8.3	6.1	not assigned.unknown	not assigned.unknown
MSGI1_75782	NODE_26444_length_170_cov_4.035294	0.8	2.3	12.4	0.7	0	-4.1	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_28513	NODE_2645_length_385_cov_229.875320	127.1	62.8	33.8	60.6	-1	0	1.9	0	stress.abiotic.heat	BIP (LUMINAL BINDING PROTEIN); ATP binding luminal binding protein (BiP) Identical to Luminal-binding protein 2 precursor (BiP2) (AtBP2) [Arabidopsis Thaliana] (GB:Q39043;GB:Q39042); Identical to Luminal-binding protein 1 precursor (BiP1) (AtBP1) [Arabido
MSGI1_43116	NODE_26458_length_278_cov_7.115108	8.1	20.2	2.6	3.1	0	0	0	2.7	RNA.regulation of transcription.GRAS transcription factor family	scarecrow-like transcription factor 14 (SCL14)  similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G29060.1); similar to SCARECROW-like protein [Lilium lon (GB:BAC77269.2); contains InterPro domain GRAS transcription
MSGI1_76256	NODE_26470_length_169_cov_46.656803	1.2	0.9	13.3	1.1	0	-3.6	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_114331	NODE_26473_length_94_cov_15.723404	13.4	13.9	0.3	0	0	0	5.5	4.8	not assigned.unknown	not assigned.unknown
MSGI1_112646	NODE_26490_length_108_cov_17.796297	14.2	28.6	8.9	6.9	0	0	0	2.1	N-metabolism.ammonia metabolism.glutamine synthase	"ATGSR2 (Arabidopsis thaliana glutamine synthase clone R2); glutamate-ammonia ligase encodes a cytosolic glutamate synthetase, this enzyme has low affinity with substrate ammonium Identical to Glutamine synthetase cytosolic isozyme 1-2 (EC 6.3.1.2) (GLN1;"
MSGI1_33953	NODE_26491_length_335_cov_17.265671	9.6	27.7	0.4	0	0	0	0	5.8	not assigned.unknown	not assigned.unknown
MSGI1_116411	NODE_26495_length_75_cov_14.386666	15.9	13.7	0	0	0	0	5	4.8	not assigned.unknown	not assigned.unknown
MSGI1_105855	NODE_26516_length_127_cov_12.133859	22.1	1.5	7.5	7.2	-3.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_39617	NODE_26520_length_297_cov_13.010101	13.6	52.2	54.8	21.4	1.9	-1.4	-2	1.3	not assigned.unknown	not assigned.unknown
MSGI1_37163	NODE_26531_length_312_cov_9.852564	13.8	0.1	1.8	0	-7.1	0	0	0	hormone metabolism.auxin.synthesis-degradation	"UGT74B1 (UDP-glucosyl transferase 74B1); UDP-glycosyltransferase/ thiohydroximate beta-D-glucosyltransferase/ transferase, transferring glycosyl groups Encodes a UDP-glucose:thiohydroximate S-glucosyltransferase, involved in glucosinolate biosynthesis si"
MSGI1_45814	NODE_26544_length_265_cov_14.316981	3.5	3.4	32	9.5	0	-1.8	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_61662	NODE_26546_length_204_cov_130.426468	108.4	34.2	11.5	25.5	-1.7	0	3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_32107	NODE_26549_length_350_cov_22.014286	7.1	33.3	3.2	2.9	2.2	0	0	3.5	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	"lipase class 3 family protein  similar to DAD1 (DEFECTIVE ANTHER DEHISCENCE 1), triacylglycerol lipase [Arabidopsis thaliana] (TAIR:AT2G44810.1); similar to lipase-like protein [Oryza sativa] (GB:CAC39051.1); similar to Os02g0653900 [Oryza sativa (japoni"
MSGI1_21016	NODE_26552_length_484_cov_15.264462	11.2	13.2	0	0	0	0	4.5	4.7	stress.biotic	"disease resistance protein (NBS-LRR class), putative  Identical to Putative disease resistance protein At4g27190 [Arabidopsis Thaliana] (GB:Q9T048); similar to disease resistance protein (NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G27220.1)"
MSGI1_121767	NODE_26561_length_61_cov_17.967213	22.2	12.9	12.8	0.4	0	-5	0	5	"misc.gluco-, galacto- and mannosidases"	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT3G52840.1)"
MSGI1_121767	NODE_26561_length_61_cov_17.967213	22.2	12.9	12.8	0.4	0	-5	0	5	cell wall.degradation.mannan-xylose-arabinose-fucose	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT3G52840.1)"
MSGI1_68852	NODE_26562_length_185_cov_20.481081	25.3	11.5	0	0	0	0	5.7	4.5	redox.ascorbate and glutathione.ascorbate	"DHAR3 (DEHYDROASCORBATE REDUCTASE 1); glutathione dehydrogenase (ascorbate) The protein undergoes thiolation following treatment with the  oxidant tert-butylhydroperoxide. similar to DHAR2, glutathione dehydrogenase (ascorbate) [Arabidopsis thaliana] (TA"
MSGI1_31176	NODE_26562_length_358_cov_5.918994	1.8	1.9	14.1	17.6	0	0	0	-3.2	not assigned.unknown	not assigned.unknown
MSGI1_43700	NODE_26568_length_275_cov_35.861816	10.3	14.2	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_117995	NODE_26571_length_63_cov_24.476191	3.1	7.6	17.3	2.8	0	-2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_30829	NODE_26575_length_361_cov_4.099723	0.1	0	3.8	10.7	0	0	0	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_60004	NODE_26578_length_209_cov_10.578947	8.2	28.8	3.6	1.7	1.8	0	0	4.1	not assigned.unknown	not assigned.unknown
MSGI1_105852	NODE_26581_length_127_cov_17.149607	12.4	15.8	42.1	20.8	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_12875	NODE_2659_length_662_cov_60.537766	0	0	87.4	123	0	0	-7.4	-7.9	not assigned.unknown	not assigned.unknown
MSGI1_70205	NODE_26599_length_182_cov_12.461538	0.1	0.3	7.2	29.4	0	2	0	-6.6	not assigned.unknown	not assigned.unknown
MSGI1_19111	NODE_26603_length_521_cov_29.168905	19.7	24.3	0.8	0.3	0	0	4.6	6.3	transport.metabolite transporters at the mitochondrial membrane	dicarboxylate/tricarboxylate carrier (DTC)  similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT2G22500.1); similar to Mitochondrial carrier protein [Medicago truncatula] (GB:ABE79078.1); similar to oxoglutarate malate
MSGI1_55307	NODE_2661_length_225_cov_22.324444	0	0	27.3	5.6	0	-2.3	-5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_84308	NODE_26616_length_155_cov_53.851612	26.6	5	37.6	11.6	-2.4	-1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_33706	NODE_26618_length_337_cov_5.255193	0.2	0.1	14.1	1.8	0	0	-6.1	0	not assigned.unknown	not assigned.unknown
MSGI1_14059	NODE_26627_length_628_cov_58.525478	4.4	21.3	10.2	11.1	2.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_115759	NODE_26627_length_81_cov_78.444443	63.2	195.5	79.3	35.1	1.6	-1.2	0	2.5	protein.degradation.ubiquitin	"UBQ13 (ubiquitin 13) polyubiquitin gene,Columbia ecotype revealed that the gene contained a 3.9-kb insertion in the coding region from mitochondrial DNA. Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9"
MSGI1_91770	NODE_26630_length_144_cov_32.118057	16.3	59.4	25.8	46.2	1.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_49039	NODE_26634_length_250_cov_37.028000	24.2	98.1	50.5	67.2	2	0	0	0	RNA.regulation of transcription.bZIP transcription factor family	GBF6 (G-box binding factor 6); DNA binding / transcription factor Encodes a basic domain leucine zipper (bZip) transcription factor. similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G75390.1); similar to cAMP response e
MSGI1_52954	NODE_26639_length_234_cov_21.829060	25.3	6.4	0	0	-2	0	5.7	0	not assigned.unknown	not assigned.unknown
MSGI1_19236	NODE_26648_length_519_cov_20.021194	3.3	12.9	148	0.9	0	-7.4	-5.5	3.8	protein.degradation.ubiquitin.E3.RING	armadillo/beta-catenin repeat family protein / U-box domain-containing protein  similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G10560.1); similar to Os08g0415600 [Oryza sativa (jap
MSGI1_45616	NODE_26661_length_266_cov_9.063910	7.2	26.7	5.8	9.5	1.9	0	0	0	signalling.receptor kinases.leucine rich repeat XI	"CLV1 (CLAVATA 1); ATP binding / kinase/ protein serine/threonine kinase Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negat"
MSGI1_45616	NODE_26661_length_266_cov_9.063910	7.2	26.7	5.8	9.5	1.9	0	0	0	cell wall	"CLV1 (CLAVATA 1); ATP binding / kinase/ protein serine/threonine kinase Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negat"
MSGI1_108806	NODE_2667_length_124_cov_40.814518	38.9	63	69.3	151.4	0	1.1	0	-1.3	C1-metabolism	"FDH (FORMATE DEHYDROGENASE); NAD binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor Encodes a NAD-dependent formate dehydrogenase. Identical to Formate dehydrogenase, mitochondrial precursor (EC 1.2."
MSGI1_47070	NODE_26682_length_259_cov_6.324324	1.1	0.5	11.8	16.6	0	0	0	-5.1	signalling.receptor kinases.misc	"leucine-rich repeat protein kinase, putative  similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G21340.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51880.1); similar to"
MSGI1_47070	NODE_26682_length_259_cov_6.324324	1.1	0.5	11.8	16.6	0	0	0	-5.1	signalling.light	"leucine-rich repeat protein kinase, putative  similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G21340.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51880.1); similar to"
MSGI1_111320	NODE_2669_length_119_cov_88.621849	50.3	18	21.7	16.2	-1.5	0	1.2	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 35 precursor (EC 1.11.1.7) (Atperox P35) (ATP21a) (PER35) [Arabidopsis Thaliana] (GB:Q96510); similar to peroxidase 73 (PER73) (P73) (PRXR11) [Arabidopsis thaliana] (TAIR:AT5G67400.1); similar to peroxidase 1"
MSGI1_111320	NODE_2669_length_119_cov_88.621849	50.3	18	21.7	16.2	-1.5	0	1.2	0	cell wall	"peroxidase, putative  Identical to Peroxidase 35 precursor (EC 1.11.1.7) (Atperox P35) (ATP21a) (PER35) [Arabidopsis Thaliana] (GB:Q96510); similar to peroxidase 73 (PER73) (P73) (PRXR11) [Arabidopsis thaliana] (TAIR:AT5G67400.1); similar to peroxidase 1"
MSGI1_86207	NODE_26703_length_152_cov_42.197369	46.3	23	1.1	1.2	0	0	5.4	4.3	protein.synthesis.misc ribososomal protein	"RPS18C (S18 RIBOSOMAL PROTEIN); structural constituent of ribosome encodes a ribosomal protein S18C, a constituent of the small subunit of the ribosomal complex Identical to 40S ribosomal protein S18 (RPS18C) [Arabidopsis Thaliana] (GB:P34788;GB:Q94K22);"
MSGI1_19720	NODE_26704_length_510_cov_14.900000	10.7	12.6	0.2	0.5	0	0	5.7	4.7	not assigned.unknown	not assigned.unknown
MSGI1_75263	NODE_26710_length_171_cov_18.929825	20	35.3	11.1	10	0	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_82422	NODE_26713_length_158_cov_5.936709	0	0	12	19.5	0	0	-4.6	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_91769	NODE_26715_length_144_cov_17.375000	17.2	15.8	0.2	0	0	0	6.4	5	RNA.regulation of transcription.unclassified	RPT2 (ROOT PHOTOTROPISM 2); protein binding light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis Identical to Root phototropism protein 2 (RPT2) [Arabidopsis Thaliana] (GB:Q682S0;GB:O04343;GB:O04344;G
MSGI1_91769	NODE_26715_length_144_cov_17.375000	17.2	15.8	0.2	0	0	0	6.4	5	signalling.light	RPT2 (ROOT PHOTOTROPISM 2); protein binding light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis Identical to Root phototropism protein 2 (RPT2) [Arabidopsis Thaliana] (GB:Q682S0;GB:O04343;GB:O04344;G
MSGI1_92497	NODE_26718_length_143_cov_29.454546	31.3	18.2	8.3	5.7	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_58447	NODE_26723_length_214_cov_12.682243	7.9	14.9	36.9	13.8	0	0	-2.2	0	protein.degradation.metalloprotease	VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex wi
MSGI1_114330	NODE_26726_length_94_cov_15.723404	14	47.6	28.9	48.7	1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_80689	NODE_26732_length_161_cov_80.204971	7.5	37.6	21.7	52.9	2.3	1.3	0	0	cell wall	MYB111 (myb domain protein 111); DNA binding / transcription factor Encodes a putative transcription factor (MYB48). Identical to Transcription factor MYB48 (Myb-related protein 48) (AtMYB48) (MYB48) [Arabidopsis Thaliana] (GB:Q9LX82;GB:Q4JL82;GB:Q67YJ3)
MSGI1_80689	NODE_26732_length_161_cov_80.204971	7.5	37.6	21.7	52.9	2.3	1.3	0	0	RNA.regulation of transcription.MYB domain transcription factor family	MYB111 (myb domain protein 111); DNA binding / transcription factor Encodes a putative transcription factor (MYB48). Identical to Transcription factor MYB48 (Myb-related protein 48) (AtMYB48) (MYB48) [Arabidopsis Thaliana] (GB:Q9LX82;GB:Q4JL82;GB:Q67YJ3)
MSGI1_68441	NODE_26734_length_186_cov_49.677418	46.3	22.1	11.6	11.8	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_73375	NODE_26736_length_175_cov_53.948570	61.9	30	0	0	-1	0	7	5.9	not assigned.unknown	not assigned.unknown
MSGI1_73854	NODE_26739_length_174_cov_86.867813	48.3	99.6	118.6	125.2	1	0	-1.3	0	stress.abiotic.heat	"heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)  Identical to Heat shock cognate 70 kDa protein 3 (Hsc70.3) (HSC70-3) [Arabidopsis Thaliana] (GB:O65719;GB:Q42345); similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR"
MSGI1_48836	NODE_2674_length_251_cov_19.183268	5.3	12.9	0	0	0	0	0	4.7	RNA.regulation of transcription.MYB-related transcription factor family	DNA-binding family protein  similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G47390.1); similar to MYB transcription factor MYB138 [Glycine max] (GB:ABH02859.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287)
MSGI1_24854	NODE_26742_length_429_cov_17.778555	3.1	20	16.1	2.6	2.7	0	0	2.9	not assigned.unknown	not assigned.unknown
MSGI1_58131	NODE_26743_length_215_cov_8.037210	1.3	0.6	17.2	0	0	-5.1	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_115664	NODE_26745_length_82_cov_94.670731	60.2	155.3	86.5	194.2	1.4	1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_111814	NODE_26749_length_115_cov_26.669565	22.3	12.7	0.3	0.6	0	0	6.2	4.4	gluconeogenesis.Malate DH	"PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2); malate dehydrogenase encodes a microbody NAD-dependent malate dehydrogenase Identical to Malate dehydrogenase, glyoxysomal precursor (EC 1.1.1.37) (mbNAD-MDH) [Arabidopsis Thaliana] (GB:Q9ZP05); similar to"
MSGI1_121756	NODE_26751_length_61_cov_14.163935	19.8	12	0.4	0	0	0	5.6	4.6	major CHO metabolism.degradation.starch.starch cleavage	"BMY7/TR-BAMY (beta-amylase 7); beta-amylase  similar to CT-BMY (BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to beta-amylase 1 [Nicotiana langsdorffii x Nicotiana sanderae] (GB:AAY89374.1); similar to putative chloropl"
MSGI1_115758	NODE_26755_length_81_cov_81.320984	4.3	29.7	26.1	35.8	2.8	0	-2.6	0	cell wall	MYB111 (myb domain protein 111); DNA binding / transcription factor Encodes a putative transcription factor (MYB48). Identical to Transcription factor MYB48 (Myb-related protein 48) (AtMYB48) (MYB48) [Arabidopsis Thaliana] (GB:Q9LX82;GB:Q4JL82;GB:Q67YJ3)
MSGI1_115758	NODE_26755_length_81_cov_81.320984	4.3	29.7	26.1	35.8	2.8	0	-2.6	0	RNA.regulation of transcription.MYB domain transcription factor family	MYB111 (myb domain protein 111); DNA binding / transcription factor Encodes a putative transcription factor (MYB48). Identical to Transcription factor MYB48 (Myb-related protein 48) (AtMYB48) (MYB48) [Arabidopsis Thaliana] (GB:Q9LX82;GB:Q4JL82;GB:Q67YJ3)
MSGI1_94051	NODE_26769_length_141_cov_9.773049	1	2	20	1.7	0	-3.6	-4.3	0	not assigned.unknown	not assigned.unknown
MSGI1_112041	NODE_2677_length_113_cov_21.663717	7.2	13	1.4	0.6	0	0	0	4.4	not assigned.unknown	not assigned.unknown
MSGI1_12413	NODE_2677_length_677_cov_164.193497	114.8	54.5	67.5	59.2	-1.1	0	0	0	mitochondrial electron transport / ATP synthesis.F1-ATPase	"ATP synthase D chain-related  Identical to ATP synthase D chain, mitochondrial (EC 3.6.3.14) [Arabidopsis Thaliana] (GB:Q9FT52;GB:Q8RW89;GB:Q8W039); similar to ATP synthase D chain, mitochondrial, putative [Solanum demissum] (GB:AAT40531.1); contains dom"
MSGI1_90312	NODE_26771_length_146_cov_110.520546	67	10.4	24.9	10.9	-2.7	0	1.4	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	"ELI3-2 (ELICITOR-ACTIVATED GENE 3) Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria.  Though similar to mannitol dehydrogenases, this enzyme does not have"
MSGI1_51096	NODE_26779_length_241_cov_7.605809	4.6	11.9	24.9	8.4	0	0	-2.4	0	cell wall.cellulose synthesis.cellulose synthase	"CESA3 (CELLULASE SYNTHASE 3); cellulose synthase/ transferase, transferring glycosyl groups cellulose synthase. Involved in defense signaling. Identical to Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC 2.4.1.12) (AtCesA-3) (Constitutive expr"
MSGI1_65603	NODE_26780_length_193_cov_21.487047	14.6	12.4	0.2	0.2	0	0	6.2	6	not assigned.unknown	not assigned.unknown
MSGI1_53746	NODE_26790_length_231_cov_12.489178	6.2	12.1	29.1	26.6	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_65973	NODE_26792_length_192_cov_41.687500	24	13.6	3.3	3.4	0	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_82420	NODE_26800_length_158_cov_6.101266	2.1	0.6	15.8	3.4	0	0	-2.9	0	stress.biotic	glycosyl hydrolase family 81 protein  similar to glycosyl hydrolase family 81 protein [Arabidopsis thaliana] (TAIR:AT1G18310.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96863.1); similar to beta-glucan-binding protein 4 [Medicago truncatu
MSGI1_84305	NODE_26801_length_155_cov_8.419354	0.1	0	18	0	0	-5.2	-7.5	0	development.late embryogenesis abundant	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein  similar to jacalin lectin family protein [Arabidopsis thaliana] (TAIR:AT3G16460.2); similar to group 1 LEA protein [Sisymbrium irio] (GB:AAY26119.1); co
MSGI1_71091	NODE_26803_length_180_cov_7.633333	0.7	7.7	17.8	5.2	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_49288	NODE_26812_length_249_cov_5.646586	0.1	0.5	14.7	8.2	0	0	-7.2	0	protein.aa activation.lysine-tRNA ligase	"lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative  Identical to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) [Arabidopsis Thaliana] (GB:Q9ZPI1); similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Ar"
MSGI1_62690	NODE_26816_length_201_cov_9.686567	3.6	6.7	23	7.1	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_62689	NODE_26817_length_201_cov_15.611940	25.4	15.4	6.5	19.3	0	0	2	0	RNA.RNA binding	"GR-RBP3 (glycine-rich RNA-binding protein 3); RNA binding encodes a glycine-rich RNA binding protein. Gene expression is induced by cold. similar to GR-RBP5 (glycine-rich RNA-binding protein 5), RNA binding [Arabidopsis thaliana] (TAIR:AT1G74230.1); simi"
MSGI1_113695	NODE_26829_length_100_cov_44.430000	17	23.6	13.9	5.9	0	0	0	2	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_113695	NODE_26829_length_100_cov_44.430000	17	23.6	13.9	5.9	0	0	0	2	development.unspecified	nodulin MtN21 family protein  similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT4G08300.1); similar to Os10g0210500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064323.1); similar to unknown protein [Oryza sativa (japonica cult
MSGI1_23189	NODE_26830_length_454_cov_9.290749	15.5	0.3	12.6	1.5	-5.7	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_23189	NODE_26830_length_454_cov_9.290749	15.5	0.3	12.6	1.5	-5.7	0	0	0	development.unspecified	"family II extracellular lipase 3 (EXL3)  similar to family II extracellular lipase 1 (EXL1) [Arabidopsis thaliana] (TAIR:AT1G75880.2); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE88162.1); contains InterPro domain Lipolytic enzyme,"
MSGI1_116194	NODE_26832_length_77_cov_16.935064	1.7	12.3	0.7	0	0	0	0	4.6	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1); hydrolase, hydrolyzing O-glycosyl compounds  Identical to Probable glycosyltransferase At1g55740 (EC 2.4.1.-) [Arabidopsis Thaliana] (GB:Q84VX0;GB:Q9LFZ7); similar to ATSIP2 (ARABIDOPSIS THALIANA SEED IMBI"
MSGI1_100407	NODE_26839_length_133_cov_16.315790	0.7	0.1	25.8	4.4	0	-2.6	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_40000	NODE_2684_length_295_cov_23.088135	1.5	2.3	48.8	8.9	0	-2.5	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_117696	NODE_26841_length_65_cov_92.584618	57.6	81.8	0	0	0	0	6.8	7.4	not assigned.unknown	not assigned.unknown
MSGI1_90311	NODE_26849_length_146_cov_10.835616	1.2	1.3	23.5	1.2	0	-4.3	-4.3	0	not assigned.unknown	not assigned.unknown
MSGI1_44680	NODE_26852_length_270_cov_17.014814	8.4	20.3	36	28.3	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_56414	NODE_26860_length_221_cov_37.733032	43.1	2.5	21.3	2.7	-4.1	-3	0	0	DNA.repair	methyladenine glycosylase family protein  similar to methyladenine glycosylase family protein [Arabidopsis thaliana] (TAIR:AT5G44680.1); similar to Methyladenine glycosylase [Medicago truncatula] (GB:ABE81339.1); contains InterPro domain Methyladenine gly
MSGI1_44899	NODE_26860_length_269_cov_8.390334	1.6	0.5	19.4	2.3	0	-3.1	-3.6	0	stress.biotic.respiratory burst	"ATRBOH F (RESPIRATORY BURST OXIDASE PROTEIN F); NAD(P)H oxidase Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. similar to respiratory burst oxidase, putativ"
MSGI1_44899	NODE_26860_length_269_cov_8.390334	1.6	0.5	19.4	2.3	0	-3.1	-3.6	0	stress.biotic.respiratory burst	"ATRBOH F (RESPIRATORY BURST OXIDASE PROTEIN F); NAD(P)H oxidase Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. similar to respiratory burst oxidase, putativ"
MSGI1_74752	NODE_26862_length_172_cov_44.500000	29.7	1.6	2.3	0.6	-4.2	0	3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_38421	NODE_26869_length_304_cov_9.575658	0.2	3.5	19.6	1.5	0	-3.7	-6.6	0	RNA.regulation of transcription.NAC domain transcription factor family	"NAP (NAC-LIKE, ACTIVATED BY AP3/PI); transcription factor Encodes a member of the NAC transcription factor gene family.  It is expressed in floral primordia and upregulated by AP3 and PI.  Its expression is associated with leaf senescence. Identical to N"
MSGI1_38421	NODE_26869_length_304_cov_9.575658	0.2	3.5	19.6	1.5	0	-3.7	-6.6	0	development.unspecified	"NAP (NAC-LIKE, ACTIVATED BY AP3/PI); transcription factor Encodes a member of the NAC transcription factor gene family.  It is expressed in floral primordia and upregulated by AP3 and PI.  Its expression is associated with leaf senescence. Identical to N"
MSGI1_113620	NODE_26870_length_101_cov_27.079208	20.7	14.5	1.5	2.8	0	0	3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_41989	NODE_26878_length_284_cov_50.271126	31.2	18.4	32.3	98.1	0	1.6	0	-2.4	protein.degradation.serine protease	"SCPL20 (serine carboxypeptidase-like 20); serine carboxypeptidase  similar to SCPL21 (serine carboxypeptidase-like 21), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G25420.1); similar to wound-inducible carboxypeptidase [Lycopersicon esculentu"
MSGI1_45147	NODE_26888_length_268_cov_28.742537	25.4	21.1	49.1	13.5	0	-1.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_33704	NODE_26890_length_337_cov_13.905045	0.7	2.2	45.5	3.6	0	-3.7	-6	0	"metal handling.binding, chelation and storage"	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related  similar to heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related [Arabidopsis thaliana] (TAIR:AT4G39700.1); similar to Heavy metal transport/det
MSGI1_108802	NODE_26891_length_124_cov_42.483871	22.9	22.1	2.6	2.7	0	0	3.1	3	not assigned.unknown	not assigned.unknown
MSGI1_40133	NODE_26908_length_294_cov_22.860544	5.8	29.7	1.1	1.6	2.4	0	0	4.2	not assigned.unknown	not assigned.unknown
MSGI1_49974	NODE_26915_length_246_cov_12.959350	3.1	18.8	10.6	6.2	2.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_106817	NODE_26919_length_126_cov_23.714285	23.5	37.4	0	0	0	0	5.6	6.2	not assigned.unknown	not assigned.unknown
MSGI1_115305	NODE_26930_length_85_cov_10.388235	4.8	20.2	8	37.6	0	2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_39434	NODE_26938_length_298_cov_3.996644	0	0	3.5	10.9	0	0	0	-4.4	protein.degradation.ubiquitin.proteasom	"EMB2719 (EMBRYO DEFECTIVE 2719); binding  Identical to Probable 26S proteasome non-ATPase regulatory subunit 3a (26S proteasome subunit S3-a) [Arabidopsis Thaliana] (GB:Q9LNU4;GB:Q8L852); similar to 26S proteasome regulatory subunit S3, putative (RPN3) ["
MSGI1_112172	NODE_2694_length_112_cov_134.098221	56.8	119.2	0.3	0	1.1	0	7.6	7.9	hormone metabolism.auxin.induced-regulated-responsive-activated	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15450.1); similar to unknown [Glycine max] (GB:AAG00940.1); contains domain no description (G3D.3.60.20.10); contains domain N-terminal nucleophile aminohydrolases (Ntn hydrolases) (SSF56235)
MSGI1_59085	NODE_26942_length_212_cov_9.188680	6	6.5	7.8	24.8	0	0	0	-1.9	cell wall.modification	"ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A10) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to Expan"
MSGI1_96352	NODE_26944_length_138_cov_5.797101	0	0	11.2	7.6	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_57519	NODE_26947_length_217_cov_19.253456	12	16.1	0	0	0	0	4.6	5	not assigned.unknown	not assigned.unknown
MSGI1_93236	NODE_26950_length_142_cov_11.274648	11.4	70.7	17.5	93.9	2.6	2.4	0	0	transporter.sugars.sucrose	"SUC2 (SUCROSE-PROTON SYMPORTER 2); carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter Encodes for a high-affinity  transporter essential for phloem loading and long-distance transport. A major sucrose transporter, AtSUC2 can also transpor"
MSGI1_38600	NODE_26965_length_303_cov_10.178218	2.2	4.4	10.9	20.9	0	0	0	-2.2	RNA.regulation of transcription.MYB-related transcription factor family	myb family transcription factor  similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G23650.1); similar to H0101F08.8 [Oryza sativa (indica cultivar-group)] (GB:CAJ86209.1); contains InterPro domain Homeodomain-related; (InterPro:I
MSGI1_23725	NODE_26967_length_445_cov_6.617978	2.6	2.7	19.9	3	0	-2.7	-2.9	0	misc.cytochrome P450	"CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15); oxygen binding putative cytochrome P450 similar to CYP72A14 (cytochrome P450, family 72, subfamily A, polypeptide 14), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14680.1); similar t"
MSGI1_55595	NODE_26973_length_224_cov_6.415179	1.9	2.6	20.3	2.6	0	-3	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_62687	NODE_26989_length_201_cov_7.203980	4.7	4.7	17.6	2.1	0	-3.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_91044	NODE_26990_length_145_cov_39.689655	4	35.8	5	1.7	3.2	0	0	4.4	not assigned.unknown	not assigned.unknown
MSGI1_35484	NODE_26990_length_324_cov_5.787037	0	0	15.6	15.2	0	0	-5	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_48384	NODE_27013_length_253_cov_5.221344	14.9	3.5	0.8	1.3	0	0	4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_107812	NODE_27028_length_125_cov_38.408001	19.8	36	7.6	41.8	0	2.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_51908	NODE_27028_length_238_cov_17.718487	18.2	54.1	7	9.2	1.6	0	0	2.6	cell wall	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_51908	NODE_27028_length_238_cov_17.718487	18.2	54.1	7	9.2	1.6	0	0	2.6	"misc.oxidases - copper, flavone etc."	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_33827	NODE_27031_length_336_cov_53.562500	47.1	13.8	25.1	15.9	-1.8	0	0	0	misc.peroxidases	"peroxidase 73 (PER73) (P73) (PRXR11)  Identical to Peroxidase 73 precursor (EC 1.11.1.7) (Atperox P73) (PRXR11) (ATP10a) (PER73) [Arabidopsis Thaliana] (GB:Q43873); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT3G49960.1); similar to per"
MSGI1_31050	NODE_27034_length_359_cov_7.337048	3.7	3.7	24.4	3	0	-3	-2.7	0	cell wall	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G09010.1); similar to Os04g0619400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053898.1); similar to H0313F03.21 [Oryza sativa (indica cultivar
MSGI1_31050	NODE_27034_length_359_cov_7.337048	3.7	3.7	24.4	3	0	-3	-2.7	0	signalling.receptor kinases.leucine rich repeat VIII-2	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G09010.1); similar to Os04g0619400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053898.1); similar to H0313F03.21 [Oryza sativa (indica cultivar
MSGI1_34067	NODE_27052_length_334_cov_13.038922	13.2	4.1	0.1	0	0	0	7	0	not assigned.unknown	not assigned.unknown
MSGI1_107811	NODE_27054_length_125_cov_30.224001	29.2	47.1	0.5	0	0	0	5.9	6.6	not assigned.unknown	not assigned.unknown
MSGI1_65599	NODE_27054_length_193_cov_33.715027	56.3	29	0.4	0	0	0	7.1	5.9	not assigned.unknown	not assigned.unknown
MSGI1_74750	NODE_27055_length_172_cov_17.401163	1.5	1.2	28.2	20.7	0	0	-4.2	-4.1	not assigned.unknown	not assigned.unknown
MSGI1_112542	NODE_27057_length_109_cov_36.027523	28.8	0.6	0	0.6	-5.6	0	5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_83052	NODE_27058_length_157_cov_4.305732	0	0	25.9	3.7	0	-2.8	-5.7	0	not assigned.unknown	not assigned.unknown
MSGI1_63742	NODE_27058_length_198_cov_35.888889	27.7	17.6	7.9	20.1	0	0	1.8	0	protein.synthesis.initiation	EIF3K (eukaryotic translation initiation factor 3K) Encodes initiation factor 3k (EIF3k). Identical to Eukaryotic translation initiation factor 3 subunit 12 (eIF-3 p25) (eIF3k) (TIF3K1) [Arabidopsis Thaliana] (GB:Q9SZA3); similar to Eukaryotic translation
MSGI1_36035	NODE_27058_length_320_cov_16.146875	12.4	6.2	24	3.9	0	-2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_66764	NODE_27065_length_190_cov_7.794737	2.1	4.4	18.4	6	0	0	-3.1	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_66764	NODE_27065_length_190_cov_7.794737	2.1	4.4	18.4	6	0	0	-3.1	0	development.unspecified	nodulin family protein  similar to nodulin-related [Arabidopsis thaliana] (TAIR:AT2G34355.1); similar to nodulin family protein [Arabidopsis thaliana] (TAIR:AT1G18940.1); similar to nodulin-related [Arabidopsis thaliana] (TAIR:AT2G34350.1); similar to Unk
MSGI1_36034	NODE_27068_length_320_cov_23.303125	3.6	15.1	3.4	24.9	0	2.9	0	0	transporter.sugars.sucrose	"SUC2 (SUCROSE-PROTON SYMPORTER 2); carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter Encodes for a high-affinity  transporter essential for phloem loading and long-distance transport. A major sucrose transporter, AtSUC2 can also transpor"
MSGI1_97933	NODE_27079_length_136_cov_9.058824	1.6	1.4	25.2	5.6	0	-2.2	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_114443	NODE_2708_length_93_cov_142.397842	92.2	152.2	60.5	46.7	0	0	0	1.7	not assigned.unknown	not assigned.unknown
MSGI1_116550	NODE_27100_length_74_cov_29.891891	17	20.8	1.8	1.1	0	0	3.2	4.2	not assigned.unknown	not assigned.unknown
MSGI1_34408	NODE_27103_length_332_cov_26.159639	12.3	16.7	49.4	10.3	0	-2.3	-2	0	stress.abiotic.drought/salt	"ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis. similar to senescence/dehydration-associated protein-"
MSGI1_34408	NODE_27103_length_332_cov_26.159639	12.3	16.7	49.4	10.3	0	-2.3	-2	0	development.unspecified	"ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis. similar to senescence/dehydration-associated protein-"
MSGI1_52953	NODE_27113_length_234_cov_8.611111	21.9	1.5	11.9	1.5	-3.9	0	0	0	TCA / org. transformation.other organic acid transformaitons.malic	"ATNADP-ME3 (NADP-MALIC ENZYME 3); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor The malic enzyme (EC 1.1.1.40) encoded by the ATNADP-ME3 is presumably cytosolic"
MSGI1_103981	NODE_2712_length_129_cov_216.651169	204.1	278.6	288.5	1050.5	0	1.9	0	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_78891	NODE_27120_length_164_cov_7.121951	6.4	5.7	30	18.3	0	0	-2.2	0	RNA.processing	pre-mRNA cleavage complex-related  similar to S-locus protein-related [Arabidopsis thaliana] (TAIR:AT5G43620.1); similar to Os08g0187700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061151.1); similar to putative pre-mRNA cleavage complex II protein
MSGI1_36165	NODE_27128_length_319_cov_17.554859	1.7	2.4	44.7	5	0	-3.2	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_103980	NODE_27132_length_129_cov_9.209302	3.2	1.7	19.7	7.4	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_121735	NODE_2714_length_61_cov_1669.606567	600.9	289.8	216.6	286.6	-1.1	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_121734	NODE_27140_length_61_cov_10.836065	0	0	14	33.8	0	0	-4.8	-6.1	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase family protein  similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to lipoxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G72520.1); similar to LOX2 (LIPOXYGENASE 2) [Arabi"
MSGI1_55303	NODE_27146_length_225_cov_4.968889	0	0	0.8	12.6	0	4	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_24948	NODE_2715_length_428_cov_19.067757	22.2	4.7	5.4	2.6	-2.2	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_76795	NODE_27150_length_168_cov_9.690476	9.5	17.3	38.9	9.2	0	-2.1	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_46277	NODE_27151_length_263_cov_21.041824	4.5	23.3	6.1	13.9	2.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_100405	NODE_27152_length_133_cov_7.721805	0.4	0.6	19.3	1.3	0	-3.9	-5.6	0	not assigned.unknown	not assigned.unknown
MSGI1_34239	NODE_27153_length_333_cov_6.546546	1.1	4.2	1.4	15.4	0	3.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_63084	NODE_27164_length_200_cov_31.665001	35.7	59.3	166.5	33.2	0	-2.3	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_94802	NODE_27166_length_140_cov_22.164286	4.5	8.6	37.2	60.6	0	0	-3	-2.8	not assigned.unknown	not assigned.unknown
MSGI1_65225	NODE_27172_length_194_cov_67.675255	46.6	60.1	13.1	78.7	0	2.6	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_62323	NODE_27178_length_202_cov_9.396040	2.3	7.2	37.4	10.1	0	-1.9	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_57518	NODE_27187_length_217_cov_14.778802	9.5	15.3	0.5	1.6	0	0	0	3.3	signalling.G-proteins	"GTP binding / GTPase  similar to guanylate-binding family protein [Arabidopsis thaliana] (TAIR:AT1G03830.1); similar to Guanylate-binding protein, N-terminal domain containing protein [Tetrahymena thermophila SB210] (GB:XP_001018996.1); similar to Os02g0"
MSGI1_15363	NODE_272_length_594_cov_12.500000	2.1	13.9	52.2	4	0	-3.7	-4.6	0	RNA.regulation of transcription.NAC domain transcription factor family	"ANAC047 (Arabidopsis NAC domain containing protein 47); transcription factor  similar to NAM (Arabidopsis NAC domain containing protein 18), transcription factor [Arabidopsis thaliana] (TAIR:AT1G52880.1); similar to NAC domain protein [Cymbidium hybrid c"
MSGI1_15363	NODE_272_length_594_cov_12.500000	2.1	13.9	52.2	4	0	-3.7	-4.6	0	development.unspecified	"ANAC047 (Arabidopsis NAC domain containing protein 47); transcription factor  similar to NAM (Arabidopsis NAC domain containing protein 18), transcription factor [Arabidopsis thaliana] (TAIR:AT1G52880.1); similar to NAC domain protein [Cymbidium hybrid c"
MSGI1_121731	NODE_27205_length_61_cov_13.114754	10.1	13.3	0	0	0	0	0	4.7	transport.ABC transporters and multidrug resistance systems	PXA1 (PEROXISOMAL ABC TRANSPORTER 1) Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germinat
MSGI1_97932	NODE_27206_length_136_cov_23.117647	11	10.9	37.5	15.5	0	0	-1.8	0	hormone metabolism.cytokinin.signal transduction	AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) Encodes histidine kinase AHK2. similar to AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) [Arabidopsis thaliana] (TAIR:AT1G27320.1); similar to WOL (CYTOKININ RESPONSE 1) [Arabidopsis thaliana] (TAIR:AT2G01830.1); similar to c
MSGI1_121729	NODE_27209_length_61_cov_23.377048	14.2	14.7	95.7	33.8	0	-1.5	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_69298	NODE_27210_length_184_cov_54.989132	71.2	37.8	55.2	110.1	0	1	0	-1.5	TCA / org. transformation.other organic acid transformaitons.cyt MDH	"malate dehydrogenase, cytosolic, putative  Identical to Malate dehydrogenase, cytoplasmic 1 (EC 1.1.1.37) [Arabidopsis Thaliana] (GB:P93819); similar to malate dehydrogenase, cytosolic, putative [Arabidopsis thaliana] (TAIR:AT5G43330.1); similar to malat"
MSGI1_46275	NODE_27216_length_263_cov_49.315590	65.3	85.8	49.5	111.2	0	1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_99541	NODE_27224_length_134_cov_106.208954	101.1	105.6	243.8	110	0	-1.1	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_121726	NODE_27226_length_61_cov_39.934425	10.4	12.4	17.2	35.8	0	0	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_82416	NODE_27235_length_158_cov_4.113924	0.8	0.7	12.4	0.7	0	-4.1	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_103081	NODE_27246_length_130_cov_9.861539	9.9	0.2	8.4	20.7	0	0	0	-6.7	not assigned.unknown	not assigned.unknown
MSGI1_88234	NODE_27246_length_149_cov_10.120806	16.6	9.8	2.8	4.8	0	0	2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_86915	NODE_27255_length_151_cov_14.794702	4.3	10.6	25.7	27.7	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_64864	NODE_27256_length_195_cov_31.225641	16.7	2.7	11.9	7	-2.6	0	0	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase, putative  similar to lipoxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G67560.1); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to LOX2 (LIPOXYGENASE 2) [Arabi"
MSGI1_75771	NODE_27274_length_170_cov_4.894118	0.3	0.5	12	8	0	0	-5.3	0	not assigned.unknown	not assigned.unknown
MSGI1_62005	NODE_27281_length_203_cov_8.581281	31.4	24	9	28.1	0	1.6	1.8	0	protein.folding	"chaperonin, putative  similar to T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative [Arabidopsis thaliana] (TAIR:AT1G24510.1); similar to cytosolic chaperonin delta-subunit [Glycine max] (GB:CAE47772.1); simila"
MSGI1_116101	NODE_27287_length_78_cov_58.551281	42.4	44.4	0.7	0	0	0	5.9	6.5	not assigned.unknown	not assigned.unknown
MSGI1_66762	NODE_27289_length_190_cov_7.600000	3.2	4.8	3.3	36.7	0	3.5	0	-2.9	major CHO metabolism.synthesis.starch.AGPase	"APL3 (large subunit of AGP 3) Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isof"
MSGI1_32194	NODE_27293_length_349_cov_17.487106	9.9	18	57.5	12.6	0	-2.2	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_111813	NODE_27294_length_115_cov_55.869564	41.5	25.5	14.7	20.6	0	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_121716	NODE_27298_length_61_cov_25.590164	20.1	8.8	3.2	6.6	0	0	2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_121715	NODE_27306_length_61_cov_115.475410	27.4	31.1	9.6	70.4	0	2.9	0	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_56412	NODE_27309_length_221_cov_11.733031	15.9	12.9	0	0	0	0	5	4.7	not assigned.unknown	not assigned.unknown
MSGI1_61291	NODE_27323_length_205_cov_89.824387	48.2	63	8.2	12.1	0	0	2.6	2.4	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_61291	NODE_27323_length_205_cov_89.824387	48.2	63	8.2	12.1	0	0	2.6	2.4	misc.plastocyanin-like	ARPN (PLANTACYANIN); copper ion binding Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil. Identical to Putative basic blue protein precursor (Plantacyanin)
MSGI1_121708	NODE_27339_length_61_cov_40.081966	24.2	4.5	0	0	-2.4	0	5.6	0	RNA.regulation of transcription.unclassified	similar to SGR5 (SHOOT GRAVITROPISM 5) [Arabidopsis thaliana] (TAIR:AT2G01940.3); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD23182.1)
MSGI1_62684	NODE_27352_length_201_cov_11.353234	2.9	5.6	26.7	1.1	0	-4.6	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_9402	NODE_27353_length_786_cov_11.323155	16.9	4.4	2.9	2.4	0	0	2.5	0	misc.cytochrome P450	"CYP710A1 (cytochrome P450, family 710, subfamily A, polypeptide 1); C-22 sterol desaturase/ oxygen binding Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze in the presence of NADPH the conversion of &beta;-sitostero"
MSGI1_71486	NODE_27358_length_179_cov_6.821229	0.8	0	13.8	8	0	0	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_81800	NODE_2737_length_159_cov_64.012581	18.5	28.3	80.9	37.4	0	-1.1	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_57211	NODE_27376_length_218_cov_5.981651	0	0	13.6	20.1	0	0	-4.8	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_46274	NODE_27377_length_263_cov_17.372623	7	20.6	0.4	1.9	0	0	0	3.4	not assigned.unknown	not assigned.unknown
MSGI1_39824	NODE_2738_length_296_cov_346.361481	29.9	123.4	131.7	114.8	2	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_94799	NODE_27386_length_140_cov_8.400000	8.4	11.8	0.5	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_48603	NODE_27387_length_252_cov_21.285715	18.3	7.2	2.9	3.7	0	0	2.7	0	transport.unspecified anions	anion exchange protein family  similar to anion exchanger [Arabidopsis thaliana] (TAIR:AT4G32510.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT1G15460.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR
MSGI1_59999	NODE_2739_length_209_cov_12.483253	3.6	3.1	7.7	18	0	0	0	-2.5	RNA.regulation of transcription.unclassified	CDR1 (CONSTITUTIVE DISEASE RESISTANCE 1); aspartic-type endopeptidase/ pepsin A Encodes a protein with aspartic protease activity (also known as aspartate-type endopeptidase activity). Overexpression of the gene was shown to lead to salicylic acid (SA)-m
MSGI1_53467	NODE_27393_length_232_cov_24.530172	32.6	17.8	7.8	9.4	0	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_55048	NODE_27395_length_226_cov_8.017699	6.6	8.2	18.1	2.1	0	-3.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_61289	NODE_274_length_205_cov_95.000000	67.5	122.7	65.5	151	0	1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_77251	NODE_27401_length_167_cov_35.754490	25.3	34.7	6.8	5.9	0	0	1.9	2.6	not assigned.unknown	not assigned.unknown
MSGI1_68843	NODE_27402_length_185_cov_18.086487	18.6	29.2	2	1	0	0	3.2	4.9	not assigned.unknown	not assigned.unknown
MSGI1_85559	NODE_27403_length_153_cov_9.588235	1.9	0.8	9.5	13.4	0	0	0	-4.1	not assigned.unknown	not assigned.unknown
MSGI1_116719	NODE_27404_length_73_cov_22.506849	22.6	13.8	6.9	24.4	0	1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_83660	NODE_27405_length_156_cov_14.705129	3.4	15.7	0	0	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_111115	NODE_27407_length_121_cov_20.677687	74.1	56.6	15.2	16	0	0	2.3	1.8	not assigned.unknown	not assigned.unknown
MSGI1_110820	NODE_27414_length_122_cov_8.327868	2.7	1.8	11.4	18.9	0	0	0	-3.4	not assigned.unknown	not assigned.unknown
MSGI1_56668	NODE_27417_length_220_cov_6.059091	1.1	0.5	6.9	15.9	0	0	0	-5	not assigned.unknown	not assigned.unknown
MSGI1_102140	NODE_27419_length_131_cov_7.824428	0.4	0.2	14.7	2.6	0	0	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_41598	NODE_2743_length_286_cov_7.437063	9.4	9.5	29.1	8.1	0	-1.8	0	0	mitochondrial electron transport / ATP synthesis.electron transfer flavoprotein	"ETFALPHA (ELECTRON TRANSFER FLAVOPROTEIN ALPHA); FAD binding / electron carrier Encodes the electron transfer flavoprotein ETF alpha, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF beta is At5g43430.1) in Arabidopsis."
MSGI1_60327	NODE_27436_length_208_cov_10.870193	2.8	2.8	14.4	1.3	0	-3.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_10353	NODE_2744_length_748_cov_49.176472	33.2	9.7	21	13.2	-1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_121701	NODE_27445_length_61_cov_13.426229	0	0	15.6	4.5	0	0	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_117857	NODE_27445_length_64_cov_162.468750	140.4	105.5	5.8	7.6	0	0	4.6	3.8	not assigned.unknown	not assigned.unknown
MSGI1_73849	NODE_27458_length_174_cov_9.896552	4.4	4.9	22.2	2.4	0	-3.2	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_121699	NODE_2746_length_61_cov_73.393440	38	18.3	0	0	0	0	6.2	5.2	protein.synthesis.misc ribososomal protein	60S acidic ribosomal protein P0 (RPP0A)  Identical to 60S acidic ribosomal protein P0-1 (RPP0A) [Arabidopsis Thaliana] (GB:O04204); similar to 60S acidic ribosomal protein P0 (RPP0B) [Arabidopsis thaliana] (TAIR:AT3G09200.1); similar to Ribosomal protein
MSGI1_114994	NODE_2746_length_88_cov_1079.443237	159.7	499	1646.4	684.5	1.6	-1.3	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_97929	NODE_27460_length_136_cov_19.926470	20.6	1.9	10.4	1	-3.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_19233	NODE_27468_length_519_cov_10.499037	7.8	16.7	0.3	0.5	0	0	0	5.1	RNA.regulation of transcription.WRKY domain transcription factor family	TTR1 (WRKY domain family protein 16); transcription factor Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. Identical to Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16)
MSGI1_19233	NODE_27468_length_519_cov_10.499037	7.8	16.7	0.3	0.5	0	0	0	5.1	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G17680.1); similar to TIR-NBS type disease resistance protein [Populus trichocarpa] (GB:ABF81459"
MSGI1_118160	NODE_2747_length_62_cov_739.112915	11.5	33.9	127.4	40.8	1.6	-1.6	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_24773	NODE_2749_length_430_cov_155.527908	79.4	40.8	14.2	18.9	0	0	2.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L36a/L44 (RPL36aB)  Identical to 60S ribosomal protein L36a (RPL36AB) [Arabidopsis Thaliana] (GB:O23290;GB:Q7GD84); similar to 60S ribosomal protein L36a/L44 (RPL36aA) [Arabidopsis thaliana] (TAIR:AT3G23390.1); similar to 60S ribosom
MSGI1_75768	NODE_27492_length_170_cov_5.982353	0.5	1	16	6.7	0	0	-5	0	signalling.receptor kinases.Catharanthus roseus-like RLK1	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39000.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G38990.1); similar to protein kinase family protein [Arabidopsis t
MSGI1_72477	NODE_2750_length_177_cov_13.028249	13.5	17	0.4	0.2	0	0	5.1	6.4	secondary metabolism.N misc.cyanogenic glycosides	CYN (CYANASE); cyanate hydratase cyanase Identical to Cyanate hydratase (EC 4.2.1.104) (Cyanase) (Cyanate lyase) (Cyanate hydrolase) (CYN) [Arabidopsis Thaliana] (GB:O22683); similar to Os10g0471300 [Oryza sativa (japonica cultivar-group)] (GB:NP_0010648
MSGI1_121696	NODE_27502_length_61_cov_33.245903	20.1	16.4	0	0	0	0	5.3	5	not assigned.unknown	not assigned.unknown
MSGI1_118159	NODE_27502_length_62_cov_18.967741	0.4	1.6	24.9	2	0	-3.6	-6	0	not assigned.unknown	not assigned.unknown
MSGI1_94045	NODE_27510_length_141_cov_5.106383	3.4	3	19	8.4	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_77831	NODE_27522_length_166_cov_7.144578	1.2	2.1	15.4	2.7	0	0	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_87566	NODE_27524_length_150_cov_34.246666	35.9	2.1	259.2	60.4	-4.1	-2.1	-2.9	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_32306	NODE_27526_length_348_cov_18.896551	4.2	22	12	21.7	2.4	0	0	0	transport.amino acids	"AAP3 (amino acid permease 3); amino acid permease Amino acid permease which transports basic amino acids. similar to AAP4 (amino acid permease 4), amino acid permease [Arabidopsis thaliana] (TAIR:AT5G63850.1); similar to AAP5 (amino acid permease 5), ami"
MSGI1_63739	NODE_2753_length_198_cov_38.626263	4.8	0.6	87.5	4.1	0	-4.4	-4.2	0	misc.glutathione S transferases	ATGSTF9 (Arabidopsis thaliana Glutathione S-transferase (class phi) 9); glutathione transferase Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTF10 (EARLY DEHYDRATIO
MSGI1_97107	NODE_27531_length_137_cov_106.386864	8.9	31.6	2	17.2	1.8	3.1	0	0	transport.amino acids	"amino acid permease, putative  Identical to Auxin transporter-like protein 2 (AUX1-like protein 2) (LAX2) [Arabidopsis Thaliana] (GB:Q9S836); similar to amino acid permease, putative [Arabidopsis thaliana] (TAIR:AT5G01240.1); similar to AUX1 (AUXIN RESIS"
MSGI1_121690	NODE_27539_length_61_cov_9.295082	0	0.2	8	12.4	0	0	0	-6	secondary metabolism.flavonoids.dihydroflavonols	UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01390.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thali
MSGI1_68439	NODE_27566_length_186_cov_12.295699	7.6	9.6	23	5.1	0	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_110818	NODE_27573_length_122_cov_14.393442	13.8	10.6	0	0	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_111467	NODE_2758_length_118_cov_55.118645	22.6	30.8	0.3	0.6	0	0	6.2	5.7	not assigned.unknown	not assigned.unknown
MSGI1_104875	NODE_2758_length_128_cov_242.562500	13.1	4.5	534.6	54.9	0	-3.3	-5.4	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_6838	NODE_27580_length_919_cov_49.315559	52.7	4.9	8.1	6.7	-3.4	0	2.7	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL10 (beta-galactosidase 10); beta-galactosidase member of Glycoside Hydrolase Family 35 similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative"
MSGI1_6838	NODE_27580_length_919_cov_49.315559	52.7	4.9	8.1	6.7	-3.4	0	2.7	0	"misc.gluco-, galacto- and mannosidases"	"BGAL10 (beta-galactosidase 10); beta-galactosidase member of Glycoside Hydrolase Family 35 similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative"
MSGI1_81799	NODE_27582_length_159_cov_19.176100	13.6	53.1	27.8	47.9	2	0	0	0	cell wall.cell wall proteins.LRR	leucine-rich repeat family protein  similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT2G15880.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT
MSGI1_65222	NODE_27585_length_194_cov_50.474228	74.2	26.7	1	0.2	-1.5	0	6.2	7.1	not assigned.unknown	not assigned.unknown
MSGI1_71980	NODE_27586_length_178_cov_36.966293	5.1	36.5	7.1	7.8	2.8	0	0	2.2	RNA.regulation of transcription.C3H zinc finger family	"zinc finger (CCCH-type) family protein  similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT4G29190.1); similar to Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE91976.1); contains InterPro domain Zinc finger, CCCH-type;"
MSGI1_111812	NODE_27593_length_115_cov_49.008698	30.6	23.5	5.3	8.6	0	0	2.5	0	cell wall.precursor synthesis.GAE	"GAE6 (UDP-D-GLUCURONATE 4-EPIMERASE 6); catalytic UDP-D-glucuronate 4-epimerase similar to GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3), catalytic [Arabidopsis thaliana] (TAIR:AT4G00110.1); similar to GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2), catalytic [Arabidop"
MSGI1_68041	NODE_2760_length_187_cov_99.422462	14.4	4.8	48.1	184.9	0	1.9	-1.7	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_117583	NODE_27602_length_66_cov_51.333332	29.8	46.5	63.3	49.1	0	0	-1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_18383	NODE_27606_length_532_cov_6.208647	6.7	33.5	3.4	8.9	2.3	0	0	1.9	transport.ABC transporters and multidrug resistance systems	"P-glycoprotein, putative  Identical to Putative multidrug resistance protein 21 (P-glycoprotein 22) (MDR21) [Arabidopsis Thaliana] (GB:Q9LSJ2); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G28345.1); similar to PGP18 (P-GLYCO"
MSGI1_53744	NODE_27614_length_231_cov_83.194809	97	74.6	44.2	93.9	0	1.1	1.1	0	stress.abiotic.heat	BIP (LUMINAL BINDING PROTEIN); ATP binding luminal binding protein (BiP) Identical to Luminal-binding protein 2 precursor (BiP2) (AtBP2) [Arabidopsis Thaliana] (GB:Q39043;GB:Q39042); Identical to Luminal-binding protein 1 precursor (BiP1) (AtBP1) [Arabido
MSGI1_51904	NODE_27616_length_238_cov_36.663864	10.8	17.5	34.1	15.8	0	0	-1.7	0	protein.degradation.cysteine protease	OTU-like cysteine protease family protein  similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT5G03330.2); similar to OTU-like cysteine protease-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22968.1); similar to Os0
MSGI1_23568	NODE_27618_length_448_cov_10.281250	7.5	2.1	20	3.4	0	-2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_32104	NODE_27619_length_350_cov_19.237143	16	13.6	0.8	1.5	0	0	4.3	3.2	not assigned.unknown	not assigned.unknown
MSGI1_117318	NODE_27623_length_68_cov_142.750000	57.5	48.1	132.1	56.9	0	-1.2	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_20196	NODE_27630_length_500_cov_30.049999	30.5	36.4	0	0	0	0	5.9	6.2	not assigned.unknown	not assigned.unknown
MSGI1_88231	NODE_27631_length_149_cov_5.402685	1.5	2.8	13.7	0.5	0	-4.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_71482	NODE_27645_length_179_cov_4.653631	0.3	4.2	17	8.2	0	0	-5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_30826	NODE_27646_length_361_cov_30.592798	48.9	35.7	275	23.3	0	-3.6	-2.5	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT3G52840.1)"
MSGI1_30826	NODE_27646_length_361_cov_30.592798	48.9	35.7	275	23.3	0	-3.6	-2.5	0	"misc.gluco-, galacto- and mannosidases"	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT3G52840.1)"
MSGI1_7378	NODE_27653_length_890_cov_11.203371	8.5	21.4	31.1	17.2	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_42395	NODE_27657_length_282_cov_12.695036	16.5	2	5.5	1.6	-3	0	0	0	protein.postranslational modification	"CYCP3;2 (cyclin p3;2); cyclin-dependent protein kinase  similar to CYCP3,1 (cyclin p3,1), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT2G45080.1); similar to PREG-like protein [Picea mariana] (GB:AAC32127.1); similar to Os04g0552300 [Or"
MSGI1_59081	NODE_2766_length_212_cov_26.721699	4	32.5	10.3	13.2	3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_25854	NODE_27663_length_416_cov_164.252411	101.8	54.8	58	10.6	0	-2.5	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_113933	NODE_27696_length_98_cov_17.622450	14.3	17.4	8.6	2.5	0	0	0	2.8	not assigned.unknown	not assigned.unknown
MSGI1_94041	NODE_27700_length_141_cov_23.510639	0.7	0.4	43.8	0	0	-6.5	-6	0	not assigned.unknown	not assigned.unknown
MSGI1_103077	NODE_27704_length_130_cov_59.584614	59.7	28.2	17.3	52.5	-1.1	1.6	1.8	0	protein.folding	"CPN20 (CHAPERONIN 20); calmodulin binding Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES. Identical to 20 kDa chaperonin, chloroplast precursor (Protein Cpn21) (Chloroplast protein Cpn10) (Chloroplast chaperonin 1"
MSGI1_41387	NODE_2771_length_287_cov_32.052265	2.5	1.8	18.8	0.6	0	-5	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_41058	NODE_27716_length_289_cov_26.916956	16.1	27.8	51.6	32.5	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_68040	NODE_27729_length_187_cov_53.245991	39.8	24.8	16	23.6	0	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_87561	NODE_27745_length_150_cov_5.580000	0.6	1	6.7	12.1	0	0	0	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_55876	NODE_27749_length_223_cov_6.748879	1.2	1.3	17.6	1.2	0	-3.9	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_83047	NODE_27751_length_157_cov_32.146496	37.5	11.3	2.2	4.4	-1.7	0	4.1	0	protein.synthesis.elongation	"EMB2726 (EMBRYO DEFECTIVE 2726); translation elongation factor  similar to translation elongation factor Ts (EF-Ts), putative [Arabidopsis thaliana] (TAIR:AT4G11120.1); similar to Os12g0541500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066956.1);"
MSGI1_32874	NODE_2776_length_343_cov_43.781342	18.7	47.3	54.3	29.7	1.3	0	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_17078	NODE_27764_length_556_cov_22.812950	21.9	52.1	20.6	24.8	1.3	0	0	0	RNA.regulation of transcription.GRAS transcription factor family	PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1); transcription factor Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway. similar to SCL21 (SCARECROW-LIKE 21
MSGI1_17078	NODE_27764_length_556_cov_22.812950	21.9	52.1	20.6	24.8	1.3	0	0	0	signalling.light	PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1); transcription factor Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway. similar to SCL21 (SCARECROW-LIKE 21
MSGI1_73369	NODE_27767_length_175_cov_11.840000	4.2	16.4	27.2	3.6	0	-2.9	-2.7	0	protein.postranslational modification	"protein phosphatase 2C, putative / PP2C, putative  similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT1G07160.1); similar to protein phosphatase 2C [Medicago sativa] (GB:CAA72341.1); contains InterPro domain Prote"
MSGI1_11638	NODE_27767_length_702_cov_58.448719	20.9	35.4	24.5	56.6	0	1.2	0	0	cell wall	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_11638	NODE_27767_length_702_cov_58.448719	20.9	35.4	24.5	56.6	0	1.2	0	0	protein.degradation.subtilases	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_78889	NODE_27769_length_164_cov_9.121951	0.2	0.6	20.5	0.7	0	-4.9	-6.7	0	not assigned.unknown	not assigned.unknown
MSGI1_47286	NODE_27788_length_258_cov_86.158913	76.9	97.6	26.9	90	0	1.7	1.5	0	protein.synthesis.elongation	elongation factor 1-alpha / EF-1-alpha  Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A) (A4) [Arabidopsis Thaliana] (GB:P13905); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar
MSGI1_41986	NODE_27799_length_284_cov_24.686619	14.4	22.2	40.4	29.2	0	0	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_14790	NODE_27800_length_609_cov_21.589491	15.2	15.1	0	0	0	0	4.9	4.9	not assigned.unknown	not assigned.unknown
MSGI1_106804	NODE_27804_length_126_cov_19.944445	13.7	8.1	0.5	0.8	0	0	4.8	0	cell wall	"glycosyl hydrolase family 17 protein  Identical to Putative glucan endo-1,3-beta-glucosidase 7 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 7) ((1->3)-beta-glucanase 7) (Beta- 1,3-endoglucanase 7) (Beta-1,3-glucanase 7) [Arabidopsis Thaliana"
MSGI1_28602	NODE_27816_length_384_cov_8.148438	12.9	0.1	5.3	0.7	-7	0	0	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	ELP (EXTENSIN-LIKE PROTEIN); lipid binding extensin-like protein (ELP) similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G62510.1); similar to extensin-like protein [Brassica napus] (GB:
MSGI1_29799	NODE_27821_length_371_cov_56.919136	48.3	87	11.9	29.1	0	0	2	1.6	not assigned.unknown	not assigned.unknown
MSGI1_95541	NODE_27827_length_139_cov_25.107914	23.5	19.5	0.5	0.5	0	0	5.6	5.3	protein.targeting.mitochondria	"MPPBETA; metalloendopeptidase  Identical to Probable mitochondrial-processing peptidase subunit beta, mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) [Arabidopsis Thaliana] (GB:Q42290;GB:Q9SGA7); similar to mitochondrial processing peptidase alpha subu"
MSGI1_88226	NODE_27829_length_149_cov_10.765100	12.2	10.8	39.3	11.5	0	-1.8	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_10352	NODE_2783_length_748_cov_38.012032	14.5	15.4	60.4	15.7	0	-1.9	-2.1	0	protein.degradation.aspartate protease	aspartyl protease family protein  similar to pepsin A [Arabidopsis thaliana] (TAIR:AT1G62290.2); similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT4G04460.1); similar to aspartic protease (GB:AAB03108.1); similar to Aspartic prot
MSGI1_79475	NODE_27843_length_163_cov_20.159510	19.6	42.4	8.9	15.7	0	0	0	1.4	cell.organisation	"similar to ATMAP65-6, microtubule binding [Arabidopsis thaliana] (TAIR:AT2G01910.1); similar to putative microtubule-associated protein MAP65-1a [Oryza sativa (japonica cultivar-group)] (GB:BAD37971.1); contains InterPro domain MAP65/ASE1; (InterPro:IP"
MSGI1_8589	NODE_27845_length_827_cov_31.187424	32.6	6.7	4.1	6.1	-2.3	0	3	0	cell wall	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_8589	NODE_27845_length_827_cov_31.187424	32.6	6.7	4.1	6.1	-2.3	0	3	0	stress.biotic	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_57210	NODE_27856_length_218_cov_12.463303	4.6	11.1	27.1	9	0	0	-2.6	0	cell wall.cellulose synthesis.cellulose synthase	"CESA3 (CELLULASE SYNTHASE 3); cellulose synthase/ transferase, transferring glycosyl groups cellulose synthase. Involved in defense signaling. Identical to Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC 2.4.1.12) (AtCesA-3) (Constitutive expr"
MSGI1_115662	NODE_27856_length_82_cov_12.402439	21.2	35.2	0.3	0.4	0	0	6.1	6.5	not assigned.unknown	not assigned.unknown
MSGI1_112170	NODE_27857_length_112_cov_35.991070	30.1	48.2	0	0	0	0	5.9	6.6	not assigned.unknown	not assigned.unknown
MSGI1_103076	NODE_27858_length_130_cov_11.915384	11.2	7.4	0	0	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_73367	NODE_27859_length_175_cov_42.422855	51.1	64.9	29.3	31.9	0	0	0	1	not assigned.unknown	not assigned.unknown
MSGI1_29419	NODE_27861_length_375_cov_16.080000	26.1	9.4	6.7	11.8	0	0	2	0	lipid metabolism.FA synthesis and FA elongation.enoyl ACP reductase	"MOD1 (MOSAIC DEATH 1); enoyl-[acyl-carrier-protein] reductase (NADH)/ oxidoreductase Encodes enoyl-ACP reductase a component of the fatty acid synthase complex.  A reduced function mutation in this gene, mod1, was found in a screen for premature cell dea"
MSGI1_38418	NODE_27862_length_304_cov_25.835526	24.9	58.8	18.3	23	1.2	0	0	1.4	not assigned.unknown	not assigned.unknown
MSGI1_76791	NODE_27866_length_168_cov_8.559524	0.1	0	20.4	0.4	0	-5.7	-7.7	0	not assigned.unknown	not assigned.unknown
MSGI1_58127	NODE_27866_length_215_cov_28.269768	22.5	14.2	2.5	2.5	0	0	3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_121670	NODE_27869_length_61_cov_19.721312	9.9	13.7	16.4	38.3	0	0	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_45610	NODE_27872_length_266_cov_28.672932	24.2	70	58.9	77.9	1.5	0	-1.3	0	misc.dynamin	dynamin family protein  similar to dynamin family protein [Arabidopsis thaliana] (TAIR:AT1G60530.1); similar to OSIGBa0103I21.1 [Oryza sativa (indica cultivar-group)] (GB:CAH65868.1); similar to Os03g0260000 [Oryza sativa (japonica cultivar-group)] (GB:NP
MSGI1_86196	NODE_27881_length_152_cov_6.302631	8.9	29.5	22.4	30.9	1.7	0	0	0	transport.misc	permease  Identical to Nucleobase-ascorbate transporter 11 (AtNAT11) (NAT11) [Arabidopsis Thaliana] (GB:Q6SZ87;GB:Q8GWX5;GB:Q8LC52;GB:Q9SZK5); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:AT2G27810.1); similar to putativ
MSGI1_121669	NODE_27908_length_61_cov_43.459015	36.2	22.3	9.2	15.2	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_43290	NODE_27914_length_277_cov_12.429603	2.5	2.1	35	2.5	0	-3.8	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_57860	NODE_27919_length_216_cov_10.449074	9.1	15.1	1.1	1.4	0	0	0	3.4	not assigned.unknown	not assigned.unknown
MSGI1_63737	NODE_27926_length_198_cov_7.550505	0	0	18.9	5	0	0	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_91035	NODE_27928_length_145_cov_13.613793	13.8	14.5	0.2	0	0	0	6.1	4.9	RNA.transcription	NRPB2 (EMBRYO DEFECTIVE 1989); DNA binding encodes the largest subunit of RNA polymerase II complex (aka RNA polymerase B). Identical to DNA-directed RNA polymerase II 135 kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 2) (RPB135) [Arabidopsis T
MSGI1_121667	NODE_27942_length_61_cov_122.983604	18.5	7	0	0	0	0	5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_79474	NODE_27944_length_163_cov_5.355828	0	0.1	3.5	12.6	0	0	0	-7	not assigned.unknown	not assigned.unknown
MSGI1_27943	NODE_27947_length_391_cov_21.590794	4.1	8	24.7	9.6	0	0	-2.6	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_27943	NODE_27947_length_391_cov_21.590794	4.1	8	24.7	9.6	0	0	-2.6	0	hormone metabolism.ethylene.induced-regulated-responsive-activated	"universal stress protein (USP) family protein  similar to ethylene-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G09740.1); similar to universal stress protein family [Medicago truncatula] (GB:ABE78101.1); contains InterPro domain Universa"
MSGI1_50210	NODE_2796_length_245_cov_111.922447	30.9	20.3	4.6	5.1	0	0	2.7	0	protein.synthesis.misc ribososomal protein	"RPL16A (ribosomal protein large subunit 16A); structural constituent of ribosome encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by au"
MSGI1_91762	NODE_27968_length_144_cov_8.569445	6.4	19.8	9	3.2	0	0	0	2.6	not assigned.unknown	not assigned.unknown
MSGI1_79473	NODE_27969_length_163_cov_25.024540	7.7	23.7	7.6	26	0	1.8	0	0	cell wall.cellulose synthesis.COBRA	"COBL4/IRX6 (COBRA-LIKE4); hydrolase, hydrolyzing O-glycosyl compounds / polysaccharide binding Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduc"
MSGI1_60612	NODE_2797_length_207_cov_18.565218	4.9	22.8	5.1	11	2.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_28403	NODE_27979_length_386_cov_20.963730	32.6	25	6.5	10.6	0	0	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_2333	NODE_2798_length_1467_cov_203.691208	140.3	68.8	84.8	116.1	-1	0	0	0	amino acid metabolism.degradation.serine-glycine-cysteine group.glycine	"aminomethyltransferase, putative  Identical to Aminomethyltransferase, mitochondrial precursor (EC 2.1.2.10) (Glycine cleavage system T protein) (GCVT) (GDCST) [Arabidopsis Thaliana] (GB:O65396;GB:Q42123); similar to unknown protein [Arabidopsis thaliana"
MSGI1_37322	NODE_27980_length_311_cov_92.646301	60.6	28.5	28.2	35.3	-1.1	0	1.1	0	protein.synthesis.elongation	"EMB2726 (EMBRYO DEFECTIVE 2726); translation elongation factor  similar to translation elongation factor Ts (EF-Ts), putative [Arabidopsis thaliana] (TAIR:AT4G11120.1); similar to Os12g0541500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066956.1);"
MSGI1_90299	NODE_27986_length_146_cov_7.513699	0.3	0.5	17.6	2.2	0	-3	-5.9	0	not assigned.unknown	not assigned.unknown
MSGI1_104869	NODE_2799_length_128_cov_177.304688	98.7	166.8	55.5	61	0	0	0	1.5	not assigned.unknown	not assigned.unknown
MSGI1_11860	NODE_27990_length_694_cov_29.402018	1.7	15.8	1.3	9.7	3.2	0	0	0	cell.organisation	"microtubule motor  similar to ATK4 (ARABIDOPSIS THALIANA KINESIN 4), microtubule motor [Arabidopsis thaliana] (TAIR:AT5G27000.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT3G44730.1); similar to kinesin motor protein-related"
MSGI1_103073	NODE_27995_length_130_cov_9.915384	2.9	4.9	19.3	3.1	0	-2.6	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_38873	NODE_27999_length_301_cov_31.066444	33.9	19.6	6.3	4.8	0	0	2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_96346	NODE_28028_length_138_cov_9.246377	0.1	0.1	20.3	19.9	0	0	-7.7	-7.6	protein.degradation.ubiquitin	"ubiquitin-specific protease, putative  similar to UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT5G06600.1); similar to Ubiquitin carboxyl-terminal hydrolase family protein, expressed [Oryza sativa (jap"
MSGI1_17180	NODE_2803_length_554_cov_30.931408	29.6	0.3	97.6	79.6	-6.6	0	-1.7	-8.1	not assigned.unknown	not assigned.unknown
MSGI1_68841	NODE_28040_length_185_cov_3.967568	0	0.1	3.2	10.4	0	0	0	-6.7	not assigned.unknown	not assigned.unknown
MSGI1_52949	NODE_28043_length_234_cov_13.965812	0.9	0.6	16.8	33.7	0	0	-4.2	-5.8	not assigned.unknown	not assigned.unknown
MSGI1_121662	NODE_28058_length_61_cov_87.868851	34.9	31.1	64.6	15.2	0	-2.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_101309	NODE_28078_length_132_cov_9.287879	15.5	0.1	14.8	2.1	-7.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_49035	NODE_28083_length_250_cov_10.628000	4.7	6.5	27.1	4.8	0	-2.5	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_86194	NODE_28090_length_152_cov_18.052631	1.7	15.5	0	0	3.2	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_39613	NODE_2810_length_297_cov_423.077454	288.7	320.5	133.8	99.8	0	0	1.1	1.7	not assigned.unknown	not assigned.unknown
MSGI1_110805	NODE_28102_length_122_cov_10.057377	12.4	0.2	2.1	0.3	-6	0	0	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY18 (WRKY DNA-binding protein 18); transcription factor Pathogen-induced transcription factor. Binds W-box sequences  in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18  enhanced resistance to P
MSGI1_113694	NODE_28113_length_100_cov_16.879999	7.6	14.1	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_46682	NODE_28115_length_261_cov_8.762452	2	1.6	22.9	3.3	0	-2.8	-3.5	0	transport.metal	"YSL3 (YELLOW STRIPE LIKE 3); oligopeptide transporter  similar to YSL2 (YELLOW STRIPE LIKE 2), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G24380.1); similar to YSL1 (YELLOW STRIPE LIKE 1), oligopeptide transporter [Arabidopsis thaliana] (TA"
MSGI1_60611	NODE_28116_length_207_cov_9.309178	3	6.2	16.1	1.3	0	-3.6	0	0	signalling.receptor kinases.crinkly like	"protein kinase, putative  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G55950.1); similar to cytokinin-regulated kinase 1 [Nicotiana tabacum] (GB:AAG25966.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009);"
MSGI1_111212	NODE_2814_length_120_cov_231.316666	142.7	94.9	0.5	0	0	0	8.2	7.6	protein.synthesis.misc ribososomal protein	40S ribosomal protein S7 (RPS7A)  Identical to 40S ribosomal protein S7-1 (RPS7A) [Arabidopsis Thaliana] (GB:Q9C514); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.2); similar to 40S ribosomal protein S7-like protein [
MSGI1_63428	NODE_28153_length_199_cov_8.874372	3.8	4.6	20.9	9.6	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_95539	NODE_2816_length_139_cov_25.928057	0	0	31.6	27.8	0	0	-6	-5.8	not assigned.unknown	not assigned.unknown
MSGI1_81235	NODE_2816_length_160_cov_34.200001	1.2	2.1	70.6	31.8	0	-1.2	-5.9	-3.9	not assigned.unknown	not assigned.unknown
MSGI1_34536	NODE_2816_length_331_cov_37.154079	46.1	1.6	0	0	-4.8	0	6.5	0	cell wall.degradation.pectate lyases and polygalacturonases	"PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding polygalacturonase inhibiting protein 1 (PGIP1) mRNA, Identical to Polygalacturonase inhibitor 1 precursor (Polygalacturonase-inhibiting protein) (PGIP-1) (PGIP1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_49282	NODE_28162_length_249_cov_14.321285	21.6	21.6	15.9	41.9	0	1.4	0	0	RNA.processing.splicing	"ATU2AF35B; RNA binding U2 auxiliary factor small subunit. The atU2AF35b protein and its homolog, atU2AF35a, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with"
MSGI1_108790	NODE_28175_length_124_cov_6.653226	0	0	5	14.6	0	0	0	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_31493	NODE_2818_length_355_cov_42.681690	51.6	31.1	21.9	17.6	0	0	1.2	0	cell.organisation	myosin heavy chain-related  similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT2G40820.1); similar to plectin-related protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD68172.1); similar to Os01g0805700 [Oryza sativa (japonica
MSGI1_74312	NODE_28180_length_173_cov_25.583815	22.3	19.8	27.9	4.9	0	-2.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_30645	NODE_2820_length_363_cov_192.355377	117.7	70.6	59.2	58.2	0	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_98702	NODE_28202_length_135_cov_10.059259	1.4	2.2	16.9	14.3	0	0	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_88224	NODE_28207_length_149_cov_10.879194	6.2	3.4	30.8	7.9	0	-2	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_46027	NODE_28215_length_264_cov_8.382576	3.1	19.5	2.7	6.3	2.7	0	0	0	DNA.unspecified	pseudogene of 3'-5' exonuclease domain-containing protein
MSGI1_5606	NODE_2822_length_1002_cov_133.076843	91.6	75.3	3.7	10.3	0	0	4.6	2.9	not assigned.unknown	not assigned.unknown
MSGI1_32873	NODE_28223_length_343_cov_7.825073	31.2	4.5	7.9	8.9	-2.8	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_78883	NODE_28230_length_164_cov_12.079268	14.5	0.4	2.4	0.4	-5.2	0	0	0	secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase	"CHS (CHALCONE SYNTHASE); naringenin-chalcone synthase Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids.  Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of"
MSGI1_111113	NODE_28231_length_121_cov_25.677687	2.1	1.1	8.3	22.6	0	0	0	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_50917	NODE_2824_length_242_cov_8.623967	0	0	9	22.4	0	0	0	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_28859	NODE_2824_length_381_cov_147.128616	45.9	26.6	14.3	13	0	0	1.7	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L27 (RPL27C)  Identical to 60S ribosomal protein L27-3 (RPL27C) [Arabidopsis Thaliana] (GB:P51419;GB:O23354); similar to 60S ribosomal protein L27 (RPL27B) [Arabidopsis thaliana] (TAIR:AT3G22230.1); similar to Ribosomal protein L27e;
MSGI1_33186	NODE_28250_length_341_cov_6.756598	1.6	15.2	1.6	7.6	3.2	0	0	0	cell wall.degradation.pectate lyases and polygalacturonases	lyase  similar to lyase [Arabidopsis thaliana] (TAIR:AT4G38030.1); similar to lyase [Arabidopsis thaliana] (TAIR:AT4G37950.1); similar to lyase [Arabidopsis thaliana] (TAIR:AT1G09910.1); similar to Os08g0554100 [Oryza sativa (japonica cultivar-group)] (G
MSGI1_62001	NODE_28266_length_203_cov_9.054187	10.5	0.2	4	0.9	-5.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_76248	NODE_28268_length_169_cov_6.349113	0	0	12.5	21.2	0	0	-4.6	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_83044	NODE_2828_length_157_cov_59.388535	1.9	0.9	114.9	0.7	0	-7.4	-5.9	0	protein.postranslational modification	AHG3/ATPP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA); protein binding / protein phosphatase type 2C Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA.
MSGI1_29328	NODE_28285_length_376_cov_25.122341	20	15.5	37.2	11.3	0	-1.7	0	0	development.unspecified	AGL8 (AGAMOUS-LIKE 8); transcription factor MADS box gene negatively regulated  by APETALA1 Identical to Agamous-like MADS-box protein AGL8 (Floral homeotic protein AGL8) (Transcription factor FRUITFULL) (AGL8) [Arabidopsis Thaliana] (GB:Q38876); similar
MSGI1_29328	NODE_28285_length_376_cov_25.122341	20	15.5	37.2	11.3	0	-1.7	0	0	RNA.regulation of transcription.MADS box transcription factor family	AGL8 (AGAMOUS-LIKE 8); transcription factor MADS box gene negatively regulated  by APETALA1 Identical to Agamous-like MADS-box protein AGL8 (Floral homeotic protein AGL8) (Transcription factor FRUITFULL) (AGL8) [Arabidopsis Thaliana] (GB:Q38876); similar
MSGI1_121654	NODE_28286_length_61_cov_66.081970	2.8	13.7	0	0	0	0	0	4.8	RNA.regulation of transcription.C3H zinc finger family	zinc finger (CCCH-type) family protein  similar to CZF1/ZFAR1 [Arabidopsis thaliana] (TAIR:AT2G40140.2); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro
MSGI1_92480	NODE_28288_length_143_cov_18.713287	3	4.9	22.4	3	0	-2.9	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_62319	NODE_28294_length_202_cov_9.267326	0.1	1	21.6	0	0	-5.4	-7.8	0	protein.degradation.metalloprotease	ATFTSH6/FTSH6 (FtsH protease 6); ATP-dependent peptidase/ ATPase/ metallopeptidase/ peptidase/ zinc ion binding Encodes an FtsH protease that is localized to the chloroplast. AtFtsH6 is involved in the degradation of both Lhcb3 and Lhcb1 during senescenc
MSGI1_18240	NODE_28302_length_534_cov_19.865168	11.9	13.9	33.1	39.1	0	0	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_8503	NODE_2831_length_831_cov_9.779783	1.6	4.4	15.9	3.3	0	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_15669	NODE_2832_length_586_cov_93.310577	63.5	12.1	77.9	12.2	-2.4	-2.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_112645	NODE_28330_length_108_cov_46.398148	12.4	39.7	19.9	29.2	1.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_62678	NODE_28355_length_201_cov_6.885572	0.1	0.1	15.2	8.4	0	0	-7.2	0	not assigned.unknown	not assigned.unknown
MSGI1_110802	NODE_28356_length_122_cov_4.836066	5.2	6.9	22.5	9.6	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_62318	NODE_28363_length_202_cov_17.495050	1.2	11.5	67.3	5.1	0	-3.7	-5.8	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP2 (ARABIDOPSIS THALIANA SEED IMBIBITION 2); hydrolase, hydrolyzing O-glycosyl compounds  similar to ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G55740.1); similar to DI"
MSGI1_114327	NODE_28388_length_94_cov_107.851067	7.9	32.6	3.5	4.2	2	0	0	3	cell wall	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_114327	NODE_28388_length_94_cov_107.851067	7.9	32.6	3.5	4.2	2	0	0	3	"misc.oxidases - copper, flavone etc."	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_57515	NODE_28406_length_217_cov_7.917051	1.5	1.7	11.2	20	0	0	0	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_121650	NODE_2842_length_61_cov_411.311462	194	50.7	0	0	-1.9	0	8.6	6.7	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_115066	NODE_28422_length_87_cov_33.574711	14.8	27.2	0	0	0	0	4.9	5.8	not assigned.unknown	not assigned.unknown
MSGI1_86908	NODE_28424_length_151_cov_11.225165	0.1	0	23.2	0	0	-5.5	-7.9	0	not assigned.unknown	not assigned.unknown
MSGI1_36425	NODE_28424_length_317_cov_37.867508	35.2	42.8	0	0	0	0	6.1	6.4	not assigned.unknown	not assigned.unknown
MSGI1_22566	NODE_2844_length_462_cov_111.645020	73.3	99.4	155.6	64.6	0	-1.3	-1.1	0	cell.organisation	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5); actin binding Encodes actin depolymerizing factor 5 (ADF5). Identical to Actin-depolymerizing factor 5 (ADF-5) (AtADF5) (ADF5) [Arabidopsis Thaliana] (GB:Q9ZNT3;GB:Q9SLE7); similar to actin binding [Arabidopsis thali
MSGI1_85554	NODE_28442_length_153_cov_15.823529	1.2	22.3	36.8	5.4	4.2	-2.8	-4.9	2	not assigned.unknown	not assigned.unknown
MSGI1_89604	NODE_28447_length_147_cov_8.734694	3.3	4.4	37.6	3.4	0	-3.5	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_14352	NODE_2846_length_620_cov_35.387096	14.5	23	4.3	4.8	0	0	0	2.3	not assigned.unknown	not assigned.unknown
MSGI1_97096	NODE_28478_length_137_cov_25.043797	4.4	5.3	18.6	30.9	0	0	0	-2.5	not assigned.unknown	not assigned.unknown
MSGI1_64519	NODE_2848_length_196_cov_32.147961	5	18.6	0	0	0	0	0	5.2	not assigned.unknown	not assigned.unknown
MSGI1_99535	NODE_28480_length_134_cov_12.388060	1.7	20.8	12.2	10	3.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_55588	NODE_28484_length_224_cov_3.450893	2.4	2.7	20.8	8.8	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_39822	NODE_28491_length_296_cov_6.969594	1.1	2.5	17.3	14.7	0	0	-4	0	misc.cytochrome P450	"CYP707A4 (cytochrome P450, family 707, subfamily A, polypeptide 4); oxygen binding Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. similar to CYP707A1 (cytochrome P450, family 707, subfam"
MSGI1_64132	NODE_28499_length_197_cov_5.040609	0	0	14.1	11.8	0	0	-4.8	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_121647	NODE_2850_length_61_cov_31.885246	0	0	28.3	19.4	0	0	-5.8	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_79469	NODE_28516_length_163_cov_20.202454	8.5	11.9	29.1	9.6	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_84947	NODE_28528_length_154_cov_9.824676	0.1	0.4	10.9	14.9	0	0	-6.8	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_77824	NODE_2853_length_166_cov_27.746988	27.2	21.6	68.4	2.7	0	-4.7	-1.3	3	not assigned.unknown	not assigned.unknown
MSGI1_113153	NODE_2854_length_104_cov_32.798077	11.3	8.5	10.9	0.3	0	-5.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_17534	NODE_2854_length_547_cov_31.839123	0.1	0.2	17.6	10.3	0	0	-7.5	-5.7	not assigned.unknown	not assigned.unknown
MSGI1_63071	NODE_28547_length_200_cov_10.535000	0.5	1.8	22.5	0.6	0	-5.2	-5.5	0	protein.degradation.metalloprotease	ATFTSH6/FTSH6 (FtsH protease 6); ATP-dependent peptidase/ ATPase/ metallopeptidase/ peptidase/ zinc ion binding Encodes an FtsH protease that is localized to the chloroplast. AtFtsH6 is involved in the degradation of both Lhcb3 and Lhcb1 during senescenc
MSGI1_45607	NODE_28565_length_266_cov_5.962406	0.8	1.8	11.3	15.2	0	0	0	-3.1	not assigned.unknown	not assigned.unknown
MSGI1_87553	NODE_28566_length_150_cov_15.740000	2	1.1	26.5	5.5	0	-2.3	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_47067	NODE_28572_length_259_cov_6.393822	3.6	10	96.9	9.7	0	-3.3	-4.8	0	development.unspecified	seven in absentia (SINA) family protein  Identical to E3 ubiquitin-protein ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5) (SINAT5) [Arabidopsis Thaliana] (GB:Q8S3N1;GB:Q8GYS3;GB:Q9FK06); similar to seven in absentia (SINA) family protein [Arabi
MSGI1_8558	NODE_2859_length_828_cov_14.937198	9.3	10.8	31.6	9	0	-1.8	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_76786	NODE_28592_length_168_cov_12.589286	5.5	4.6	22.5	2.2	0	-3.4	0	0	"misc.gluco-, galacto- and mannosidases"	"glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G54570.1); similar to Os03g0212800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049358.1); similar to beta-glucosidase, putative [Me"
MSGI1_121642	NODE_28598_length_61_cov_13.213115	8.6	5.9	6.4	30.5	0	2.3	0	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_57512	NODE_28626_length_217_cov_14.050692	0.2	3.2	29	5.4	0	-2.4	-7.2	0	RNA.regulation of transcription.C3H zinc finger family	zinc finger (CCCH-type) family protein  similar to CZF1/ZFAR1 [Arabidopsis thaliana] (TAIR:AT2G40140.2); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro
MSGI1_101305	NODE_28629_length_132_cov_6.787879	0	0.1	13.6	3.1	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_54521	NODE_28637_length_228_cov_18.842106	0.3	0.1	56.6	0	0	-6.8	-7.6	0	not assigned.unknown	not assigned.unknown
MSGI1_28402	NODE_28675_length_386_cov_32.873058	36.7	19.2	19.6	44.8	0	1.2	0	0	lipid metabolism.FA desaturation.omega 3 desaturase	"FAD8 (FATTY ACID DESATURASE 8); omega-3 fatty acid desaturase Encodes a temperature sensitive plastidic fatty acid desaturase. Identical to Temperature-sensitive omega-3 fatty acid desaturase, chloroplast precursor (EC 1.14.19.-) (FAD8) [Arabidopsis Thal"
MSGI1_39995	NODE_28699_length_295_cov_5.284746	0.8	0.9	13.2	9.7	0	0	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_26091	NODE_28700_length_413_cov_11.496368	27.6	11.1	7.6	14.6	0	0	1.9	0	transport.metabolite transporters at the mitochondrial membrane	BOU (A BOUT DE SOUFFLE); binding Seedling lethal mutation; Mitochondrial Carnitine Acyl Carrier-Like Protein Identical to Mitochondrial carnitine/acylcarnitine carrier-like protein (Protein A BOUT DE SOUFFLE) (Carnitine/acylcarnitine translocase-like prot
MSGI1_66757	NODE_28703_length_190_cov_7.463158	5.4	5.4	35.2	2	0	-4.1	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_117855	NODE_28730_length_64_cov_43.828125	10	14.7	2.3	1.6	0	0	0	3.2	not assigned.unknown	not assigned.unknown
MSGI1_103069	NODE_28731_length_130_cov_8.492308	1	2.4	16.5	9.2	0	0	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_35481	NODE_2875_length_324_cov_112.759262	129.3	1.1	3.9	0.1	-6.9	0	5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_110800	NODE_28761_length_122_cov_3.409836	22.6	1.6	0	0	-3.8	0	5.5	0	not assigned.unknown	not assigned.unknown
MSGI1_46026	NODE_2878_length_264_cov_43.045456	52.8	17.9	30.1	29.9	-1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_117078	NODE_28783_length_70_cov_14.742857	0.3	0	16	0.4	0	-5.3	-5.7	0	amino acid metabolism.synthesis.glutamate family.proline.delta 1-pyrroline-5-carboxylate synthetase	P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1) encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions b
MSGI1_105839	NODE_28803_length_127_cov_5.724410	1.2	0.9	6.5	13.6	0	0	0	-3.9	secondary metabolism.phenylpropanoids	"aminotransferase class I and II family protein  similar to AAT/ATAAT/MEE17 (maternal effect embryo arrest 17), aspartate transaminase [Arabidopsis thaliana] (TAIR:AT2G22250.3); similar to Os09g0453800 [Oryza sativa (japonica cultivar-group)] (GB:NP_00106"
MSGI1_36833	NODE_2881_length_314_cov_479.047760	436.8	285.9	258.4	133.6	0	0	0	1.1	not assigned.unknown	not assigned.unknown
MSGI1_60942	NODE_28826_length_206_cov_7.315534	5.2	3.1	14.9	17.3	0	0	0	-2.5	signalling.calcium	"CPK1 (calcium-dependent protein kinase isoform AK1); calcium- and calmodulin-dependent protein kinase/ kinase A calcium-dependent protein kinase that can phosphorylate phenylalanine ammonia lyase (PAL), a key enzyme in pathogen defense. Identical to Calc"
MSGI1_92473	NODE_2883_length_143_cov_214.937057	93.4	50.9	18.8	49.7	0	1.4	2.3	0	protein.synthesis.misc ribososomal protein	60S acidic ribosomal protein P0 (RPP0B)  Identical to 60S acidic ribosomal protein P0-2 (RPP0B) [Arabidopsis Thaliana] (GB:Q42112;GB:Q8LCI7;GB:Q9SR42;GB:Q9SS70); similar to 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] (TAIR:AT3G11250.1);
MSGI1_121636	NODE_28833_length_61_cov_9.606558	0	0	11.6	10.3	0	0	-4.5	0	RNA.regulation of transcription.WRKY domain transcription factor family	"WRKY family transcription factor  Identical to Probable WRKY transcription factor 12 (WRKY DNA-binding protein 12) (WRKY12) [Arabidopsis Thaliana] (GB:Q93WY4;GB:Q8S8S5); similar to WRKY13 (WRKY DNA-binding protein 13), transcription factor [Arabidopsis t"
MSGI1_58770	NODE_28846_length_213_cov_4.708920	0	0.1	6	11.3	0	0	0	-6.8	not assigned.unknown	not assigned.unknown
MSGI1_71975	NODE_28862_length_178_cov_10.466292	0	0	23.6	1.7	0	-3.8	-5.6	0	not assigned.unknown	not assigned.unknown
MSGI1_97093	NODE_28878_length_137_cov_4.379562	0.1	0.3	8.6	18	0	0	0	-5.9	stress.abiotic.light	DDB1B (DAMAGED DNA BINDING PROTEIN 1 B) One of two closely related genes similar to a damaged DNA binding protein originally described in mammals. May form a complex with DET1 to regulate photomorphogenesis. Loss of function mutations are lethal. Identic
MSGI1_102131	NODE_28885_length_131_cov_6.465649	0.2	0.2	12.4	3.4	0	0	-6	0	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G53430.1); similar to leucine-rich repeat family protein / protein kinase family pro"
MSGI1_102131	NODE_28885_length_131_cov_6.465649	0.2	0.2	12.4	3.4	0	0	-6	0	signalling.receptor kinases.leucine rich repeat VIII-2	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G53430.1); similar to leucine-rich repeat family protein / protein kinase family pro"
MSGI1_84292	NODE_28894_length_155_cov_6.496774	0	0	14	14.4	0	0	-4.8	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_24852	NODE_28896_length_429_cov_6.519814	2.7	17.2	16.6	13.4	2.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_10975	NODE_2890_length_725_cov_62.994484	43.5	50.7	0.1	0	0	0	8.8	6.7	not assigned.unknown	not assigned.unknown
MSGI1_107791	NODE_28934_length_125_cov_19.048000	9.9	17.6	34.7	2.4	0	-3.9	-1.8	2.9	not assigned.unknown	not assigned.unknown
MSGI1_46681	NODE_28938_length_261_cov_12.532567	0.5	0.5	16.4	34	0	0	-5	-6.1	not assigned.unknown	not assigned.unknown
MSGI1_88216	NODE_28947_length_149_cov_7.791946	0.9	1.4	13.9	17	0	0	-3.9	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_66335	NODE_28947_length_191_cov_14.534032	0	0.1	27.1	11.5	0	0	-5.8	-6.8	not assigned.unknown	not assigned.unknown
MSGI1_98694	NODE_28995_length_135_cov_64.755554	65.7	52	17.3	59.4	0	1.8	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_84942	NODE_29004_length_154_cov_4.584415	0.4	0.7	16.5	10	0	0	-5.4	0	not assigned.unknown	not assigned.unknown
MSGI1_73842	NODE_29017_length_174_cov_8.373563	0	0	18.6	7.3	0	0	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_31172	NODE_29021_length_358_cov_16.748604	21.2	3.4	8.1	1.3	-2.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_65592	NODE_29028_length_193_cov_6.740932	0.4	9.4	12.8	5.9	0	0	-5	0	transport.p- and v-ATPases	"AHA11 (ARABIDOPSIS H(+)-ATPASE 11); ATPase  Identical to ATPase 11, plasma membrane-type (EC 3.6.3.6) (Proton pump 11) (AHA11) [Arabidopsis Thaliana] (GB:Q9LV11); similar to AHA3 (Arabidopsis H(+)-ATPase 3), ATPase [Arabidopsis thaliana] (TAIR:AT5G57350."
MSGI1_90293	NODE_29036_length_146_cov_7.643836	25.5	51.5	14.8	18.4	0	0	0	1.5	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	basic helix-loop-helix (bHLH) family protein  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT5G46760.1); similar to basic helix-loop-helix (bHLH) family transcription factor [Brassica oleracea] (GB:ABD65632.1); cont
MSGI1_94027	NODE_29050_length_141_cov_10.695036	1	11.2	0.2	0	0	0	0	4.5	RNA.regulation of transcription.GRAS transcription factor family	scarecrow-like transcription factor 11 (SCL11)  similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G46600.1); similar to GRAS4 [Solanum lycopersicum] (GB:ABD72960.1); contains InterPro domain GRAS transcription factor
MSGI1_94027	NODE_29050_length_141_cov_10.695036	1	11.2	0.2	0	0	0	0	4.5	development.unspecified	scarecrow-like transcription factor 11 (SCL11)  similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G46600.1); similar to GRAS4 [Solanum lycopersicum] (GB:ABD72960.1); contains InterPro domain GRAS transcription factor
MSGI1_64516	NODE_2906_length_196_cov_6.857143	0.2	1.4	13.8	1.4	0	-3.3	-6.1	0	not assigned.unknown	not assigned.unknown
MSGI1_93217	NODE_29071_length_142_cov_10.091549	1.3	14.3	1.4	8.9	3.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_87548	NODE_29080_length_150_cov_4.080000	18.2	3.3	2.5	5.5	-2.5	0	2.9	0	cell wall	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_87548	NODE_29080_length_150_cov_4.080000	18.2	3.3	2.5	5.5	-2.5	0	2.9	0	stress.biotic	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_113932	NODE_29091_length_98_cov_18.418367	0.1	0.3	23.9	24.1	0	0	-7.9	-6.3	not assigned.unknown	not assigned.unknown
MSGI1_60940	NODE_29098_length_206_cov_7.713592	4.3	4.1	12.9	21.6	0	0	0	-2.4	amino acid metabolism.synthesis.aromatic aa.chorismate.5-enolpyruvylshikimate-3-phosphate synthase	"3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase  Identical to 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor (EC 2.5.1.19) (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase"
MSGI1_68032	NODE_2910_length_187_cov_7.101604	3.7	0.9	15.2	1.4	0	-3.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_102126	NODE_29100_length_131_cov_15.030535	3.8	1.6	7.1	23.5	0	0	0	-3.9	not assigned.unknown	not assigned.unknown
MSGI1_97090	NODE_29108_length_137_cov_24.102190	53.1	40.6	21.3	19.2	0	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_60324	NODE_29115_length_208_cov_10.951923	6.7	13.8	34.5	11.9	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_49033	NODE_29115_length_250_cov_9.180000	1.7	1.8	16.8	10.3	0	0	-3.3	0	cell wall	"leucine-rich repeat protein kinase, putative  similar to FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT2G19190.1); similar to light repressible receptor protein kinase [Arabidopsis thaliana] (TAIR:AT4G29990.1); simila"
MSGI1_49033	NODE_29115_length_250_cov_9.180000	1.7	1.8	16.8	10.3	0	0	-3.3	0	cell wall	"leucine-rich repeat protein kinase, putative  similar to FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT2G19190.1); similar to light repressible receptor protein kinase [Arabidopsis thaliana] (TAIR:AT4G29990.1); simila"
MSGI1_49033	NODE_29115_length_250_cov_9.180000	1.7	1.8	16.8	10.3	0	0	-3.3	0	signalling.light	"leucine-rich repeat protein kinase, putative  similar to FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT2G19190.1); similar to light repressible receptor protein kinase [Arabidopsis thaliana] (TAIR:AT4G29990.1); simila"
MSGI1_49033	NODE_29115_length_250_cov_9.180000	1.7	1.8	16.8	10.3	0	0	-3.3	0	signalling.receptor kinases.misc	"leucine-rich repeat protein kinase, putative  similar to FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT2G19190.1); similar to light repressible receptor protein kinase [Arabidopsis thaliana] (TAIR:AT4G29990.1); simila"
MSGI1_88922	NODE_29121_length_148_cov_31.709459	30.9	16.6	0	0	0	0	5.9	5.1	stress.abiotic.drought/salt	ERD4 (EARLY-RESPONSIVE TO DEHYDRATION 4)  similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT1G32090.1); similar to Os07g0150100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058898.1); sim
MSGI1_112166	NODE_29124_length_112_cov_35.571430	11.9	11.2	21.1	3.8	0	-2.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_90291	NODE_29128_length_146_cov_62.438354	24.6	29.7	64.3	22.1	0	-1.5	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_33414	NODE_2914_length_339_cov_65.076698	68.7	35.7	29.4	31.6	0	0	1.2	0	misc.misc2	"DGL1 (defective glycosylation 1); dolichyl-diphosphooligosaccharide-protein glycotransferase Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for th"
MSGI1_97909	NODE_29156_length_136_cov_8.397058	0	0	15.5	28.3	0	0	-5	-5.8	hormone metabolism.gibberelin.induced-regulated-responsive-activated	"RGL2 (RGA-LIKE 2); transcription factor Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth.  Negative regulator of the  respon"
MSGI1_97909	NODE_29156_length_136_cov_8.397058	0	0	15.5	28.3	0	0	-5	-5.8	RNA.regulation of transcription.GRAS transcription factor family	"RGL2 (RGA-LIKE 2); transcription factor Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth.  Negative regulator of the  respon"
MSGI1_97909	NODE_29156_length_136_cov_8.397058	0	0	15.5	28.3	0	0	-5	-5.8	signalling.in sugar and nutrient physiology	"RGL2 (RGA-LIKE 2); transcription factor Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth.  Negative regulator of the  respon"
MSGI1_20945	NODE_29156_length_485_cov_35.086597	9	29.7	9.7	4.1	1.7	0	0	2.9	not assigned.unknown	not assigned.unknown
MSGI1_70613	NODE_29163_length_181_cov_7.099448	2.1	3.9	48.9	23.2	0	0	-4.5	-2.6	not assigned.unknown	not assigned.unknown
MSGI1_107784	NODE_29166_length_125_cov_5.816000	0	0.1	9.7	12.1	0	0	0	-6.9	cell.cycle.peptidylprolyl isomerase	"peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative  similar to ROF1 (ROTAMASE FKBP 1), FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT3G25230.1); similar to peptidylpro"
MSGI1_33942	NODE_2917_length_335_cov_17.188059	3.7	12.6	26.2	21	0	0	-2.8	0	protein.degradation.ubiquitin.E3.SCF.FBOX	kelch repeat-containing F-box family protein  similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G15670.1); similar to kelch repeat-containing F-box-like [Oryza sativa (japonica cultivar-group)] (GB:BAD25000.1); conta
MSGI1_47954	NODE_29180_length_255_cov_6.823529	4.7	4.8	44.2	2.2	0	-4.3	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_76782	NODE_29183_length_168_cov_12.500000	0.2	0.8	26.3	1.1	0	-4.6	-7	0	secondary metabolism.flavonoids.dihydroflavonols	UDP-glucoronosyl/UDP-glucosyl transferase family protein the glycosyltransferase (UGT72B1) is involved in metabolizing xenobiotica (chloroaniline and chlorophenole). Comparison between wild type and knock-out mutant demonstrates the central role of this g
MSGI1_95525	NODE_29204_length_139_cov_5.956834	0	0	12.4	0.5	0	-4.6	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_41596	NODE_29209_length_286_cov_6.881119	12	12.7	54.4	9.4	0	-2.5	-2.2	0	transport.nitrate	nitrate transporter (NTP3)  similar to nitrate transporter (NTP2) [Arabidopsis thaliana] (TAIR:AT2G26690.1); similar to Os02g0580900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047240.1); similar to nitrate transporter [Prunus persica] (GB:BAC8142
MSGI1_80676	NODE_29210_length_161_cov_5.242236	0.2	0	17.5	10.9	0	0	-6.5	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_38870	NODE_29211_length_301_cov_13.754153	20.4	16.4	0	0	0	0	5.4	5	not assigned.unknown	not assigned.unknown
MSGI1_61283	NODE_29223_length_205_cov_26.092684	17.2	3.2	0	0	0	0	5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_27838	NODE_29225_length_392_cov_12.255102	7.1	11	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_113327	NODE_29238_length_103_cov_11.203883	9.9	9.5	58.3	9.8	0	-2.6	-2.6	0	cell wall.modification	"ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2) member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-like A2 precursor (AtEXLA2) (AtEXPL2) (At-EXPL2) (Ath- ExpBeta-2.2) (EXLA2"
MSGI1_56944	NODE_29240_length_219_cov_13.780822	1.5	1.5	29.8	0.9	0	-5	-4.3	0	"metal handling.binding, chelation and storage"	"aminotransferase, putative encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment similar to aminotransferase-related [Arabidopsis thaliana] (TAIR:AT5G36160.1); similar to tyrosine aminotransferase [Glycine max] ("
MSGI1_58767	NODE_29244_length_213_cov_8.061033	0.2	0.3	16.7	4.4	0	0	-6.4	0	not assigned.unknown	not assigned.unknown
MSGI1_115846	NODE_29244_length_80_cov_9.662500	6.6	17.4	0.7	1.1	0	0	0	4	not assigned.unknown	not assigned.unknown
MSGI1_98688	NODE_29246_length_135_cov_7.362963	1.2	1.2	14.4	2.8	0	0	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_87544	NODE_29254_length_150_cov_4.680000	2.7	3.3	15.4	1.9	0	-3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_33185	NODE_29255_length_341_cov_9.184751	7.6	18.1	37.3	16.4	0	0	-2.3	0	cell wall.cellulose synthesis.cellulose synthase	"CESA3 (CELLULASE SYNTHASE 3); cellulose synthase/ transferase, transferring glycosyl groups cellulose synthase. Involved in defense signaling. Identical to Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC 2.4.1.12) (AtCesA-3) (Constitutive expr"
MSGI1_24305	NODE_29258_length_436_cov_8.713303	11.9	0.7	0.2	0.8	-4.1	0	5.9	0	misc.cytochrome P450	"cytochrome P450, putative  similar to CYP96A3 (cytochrome P450, family 96, subfamily A, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G65340.1); similar to CYP96A4 (cytochrome P450, family 96, subfamily A, polypeptide 4), oxygen binding"
MSGI1_36031	NODE_2926_length_320_cov_16.931250	2.3	9.2	10.9	30.3	0	0	0	-1.7	stress.abiotic.heat	heat shock protein-related  similar to ATP-dependent Clp protease ClpB protein-related [Arabidopsis thaliana] (TAIR:AT1G07200.2); similar to Os11g0104300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065527.1); similar to expressed protein [Oryza sat
MSGI1_22714	NODE_2926_length_460_cov_21.336956	16.5	25	0	0.1	0	0	5	8	not assigned.unknown	not assigned.unknown
MSGI1_84285	NODE_29270_length_155_cov_11.529033	12.4	2.8	31.5	7	0	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_52126	NODE_29275_length_237_cov_25.189873	15.9	42.1	10.6	34.8	1.4	1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_30287	NODE_29282_length_366_cov_14.475410	8.2	5.1	27.6	7.8	0	-1.8	0	0	RNA.regulation of transcription.unclassified	transcription factor  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G57780.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD19120.1); similar to Os02g0178700 [Oryza sativa (japonica cultivar-group)] (GB:NP_0
MSGI1_72904	NODE_29290_length_176_cov_4.647727	0	0	11.1	11.4	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_117695	NODE_29296_length_65_cov_35.753845	11.6	11.7	0.4	0	0	0	4.9	4.5	not assigned.unknown	not assigned.unknown
MSGI1_121626	NODE_29301_length_61_cov_25.540983	6	6.3	32.3	5.8	0	-2.5	-2.4	0	redox.ascorbate and glutathione.glutathione	"ATGPX5 (GLUTATHIONE PEROXIDASE 5); glutathione peroxidase Encodes glutathione peroxidase. Identical to Probable glutathione peroxidase 5 (EC 1.11.1.9) (GPX5) [Arabidopsis Thaliana] (GB:Q9LYB4); similar to ATGPX4 (GLUTATHIONE PEROXIDASE 4), glutathione pe"
MSGI1_113326	NODE_29307_length_103_cov_5.776699	0.4	0.8	52.6	9.2	0	-2.5	-7	0	cell wall.modification	"ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2) member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-like A2 precursor (AtEXLA2) (AtEXPL2) (At-EXPL2) (Ath- ExpBeta-2.2) (EXLA2"
MSGI1_53976	NODE_29307_length_230_cov_5.269565	6.1	10.5	36.9	10.9	0	-1.8	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_50915	NODE_29308_length_242_cov_4.797521	2	3.1	16.9	6.9	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_39994	NODE_2932_length_295_cov_143.861023	92.1	60	97.6	37.3	0	-1.4	0	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL1 (BETA GALACTOSIDASE 1); beta-galactosidase beta-galactosidase, glycosyl hydrolase family 35 similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1); similar to BGAL3 (beta-galactosidase 3), beta-galacto"
MSGI1_39994	NODE_2932_length_295_cov_143.861023	92.1	60	97.6	37.3	0	-1.4	0	0	"misc.gluco-, galacto- and mannosidases"	"BGAL1 (BETA GALACTOSIDASE 1); beta-galactosidase beta-galactosidase, glycosyl hydrolase family 35 similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1); similar to BGAL3 (beta-galactosidase 3), beta-galacto"
MSGI1_51899	NODE_29322_length_238_cov_8.306723	3.6	11.8	21.9	0.8	0	-4.8	-2.6	3.9	not assigned.unknown	not assigned.unknown
MSGI1_32190	NODE_29329_length_349_cov_25.667622	20	1.8	32.3	1.7	-3.5	-4.2	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_107779	NODE_29331_length_125_cov_10.544000	0	0	12.8	11.6	0	0	-4.7	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_66755	NODE_29333_length_190_cov_8.689474	1.1	2.5	17.2	14.8	0	0	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_88213	NODE_29354_length_149_cov_7.409396	8.4	12.2	0.5	0.2	0	0	0	5.9	not assigned.unknown	not assigned.unknown
MSGI1_85547	NODE_29360_length_153_cov_5.437909	0	0	11.6	9.1	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_51898	NODE_29360_length_238_cov_3.890756	3.2	0.2	8.6	10.9	0	0	0	-5.8	protein.degradation	ATGGH1; gamma-glutamyl hydrolase The Arabidopsis protein AtGGH1 is a gamma-glutamyl hydrolase cleaving pentaglutamates to yield di- and triglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole. similar to ATGGH2
MSGI1_51898	NODE_29360_length_238_cov_3.890756	3.2	0.2	8.6	10.9	0	0	0	-5.8	Co-factor and vitamine metabolism.folate & vitamine K.folate	ATGGH1; gamma-glutamyl hydrolase The Arabidopsis protein AtGGH1 is a gamma-glutamyl hydrolase cleaving pentaglutamates to yield di- and triglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole. similar to ATGGH2
MSGI1_66331	NODE_29361_length_191_cov_13.172775	4.5	6.6	23.5	11.9	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_117434	NODE_29364_length_67_cov_14.194030	9.2	18	67.7	14.5	0	-2.2	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_90290	NODE_2937_length_146_cov_10.636987	7.6	4.8	17.8	2.7	0	-2.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_74307	NODE_29372_length_173_cov_7.404624	1	2	15.6	1.1	0	-3.8	-4	0	cell wall.degradation.pectate lyases and polygalacturonases	"polygalacturonase, putative / pectinase, putative  similar to endo-polygalacturonase, putative [Arabidopsis thaliana] (TAIR:AT2G41850.1); similar to polygalacturonase precursor [Cucumis melo] (GB:AAC26512.1); contains InterPro domain Virulence factor, pe"
MSGI1_49281	NODE_29372_length_249_cov_45.204819	28.5	8.2	10.2	4.8	-1.8	0	0	0	DNA.synthesis/chromatin structure.histone	"histone H2B, putative  Identical to Histone H2B.1 (HTB1) [Arabidopsis Thaliana] (GB:Q9LQQ4;GB:Q8L950); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold; (InterPro:"
MSGI1_83650	NODE_29375_length_156_cov_61.224358	24.1	59.7	8.7	68.9	1.3	3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_96341	NODE_29377_length_138_cov_9.014493	5.7	5.3	17.6	1.8	0	-3.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_28797	NODE_29377_length_382_cov_14.510471	22.7	3.9	10.6	2	-2.5	0	0	0	RNA.regulation of transcription.unclassified	
MSGI1_37319	NODE_29378_length_311_cov_14.115756	17.5	0.4	5.6	0.7	-5.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_91022	NODE_29383_length_145_cov_12.406897	39.4	6.5	9.4	17.8	-2.6	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_86182	NODE_29389_length_152_cov_17.046053	9.9	22.4	32	17.7	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_121623	NODE_29394_length_61_cov_14.475410	0.2	0	14.8	7	0	0	-6.2	0	protein.degradation.ubiquitin.proteasom	"26S proteasome regulatory subunit, putative (RPN12)  similar to 26S proteasome non-ATPase regulatory subunit, putative [Arabidopsis thaliana] (TAIR:AT5G42040.1); similar to 26S proteasome regulatory particle non-ATPase subunit 12 [Camellia sinensis] (GB:"
MSGI1_61282	NODE_2940_length_205_cov_85.873169	96.5	66.8	178.8	33	0	-2.4	0	1	signalling.phosphinositides.phosphoinositide phospholipase C	"ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phosp"
MSGI1_61282	NODE_2940_length_205_cov_85.873169	96.5	66.8	178.8	33	0	-2.4	0	1	lipid metabolism.lipid degradation.lysophospholipases.phosphoinositide phospholipase C	"ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phosp"
MSGI1_60936	NODE_29400_length_206_cov_154.548538	98.1	19.2	7.5	15	-2.4	0	3.7	0	PS.lightreaction.photosystem II.LHC-II	"LHB1B1 (Photosystem II light harvesting complex gene 1.4); chlorophyll binding Photosystem II type I chlorophyll            a/b-binding protein similar to CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G2993"
MSGI1_121622	NODE_2941_length_61_cov_150.950821	64	19.6	11.6	19.4	-1.7	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_117076	NODE_29422_length_70_cov_26.028572	16.9	12.9	0	0	0	0	5.1	4.7	not assigned.unknown	not assigned.unknown
MSGI1_117433	NODE_29423_length_67_cov_19.223881	0.7	0	17.5	0	0	-5.1	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_101300	NODE_29429_length_132_cov_11.151515	14.6	7.9	0.8	0.3	0	0	4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_88921	NODE_2943_length_148_cov_29.040541	30.4	5	47.4	10.3	-2.6	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_104855	NODE_29433_length_128_cov_5.781250	0	0	4.6	12.2	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_60604	NODE_29437_length_207_cov_19.386473	21.9	14.6	0	0	0	0	5.5	4.9	transport.metabolite transporters at the mitochondrial membrane	"DCT/DIT2.1 (DICARBOXYLATE TRANSPORT); oxoglutarate:malate antiporter  similar to DIT2.2 (DICARBOXYLATE TRANSPORTER 2.2), oxoglutarate:malate antiporter [Arabidopsis thaliana] (TAIR:AT5G64280.1); similar to glutamate/malate translocator [Spinacia oleracea"
MSGI1_45376	NODE_29442_length_267_cov_22.921349	5.7	4.7	31.8	5.3	0	-2.6	-2.5	0	development.unspecified	caleosin-related family protein  similar to caleosin-related family protein [Arabidopsis thaliana] (TAIR:AT1G70670.1); similar to Os06g0254700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057304.1); similar to putative ABA-induced protein [Cynodon d
MSGI1_121618	NODE_29454_length_61_cov_5.950819	0	0.4	10.8	0.4	0	-4.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_88210	NODE_2946_length_149_cov_92.483223	3.6	42.1	22	2.6	3.5	-3.1	-2.6	4	not assigned.unknown	not assigned.unknown
MSGI1_16719	NODE_2946_length_563_cov_17.108349	0.4	0.9	23.6	25.1	0	0	-5.9	-4.8	DNA.synthesis/chromatin structure	"DEAD/DEAH box helicase, putative (RH10)  Identical to DEAD-box ATP-dependent RNA helicase 10 (EC 3.6.1.-) (RH10) [Arabidopsis Thaliana] (GB:Q8GY84;GB:Q8LA24;GB:Q9FME1;GB:Q9ZS10); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT"
MSGI1_23397	NODE_29468_length_451_cov_8.771619	4.3	9	29.3	13.1	0	0	-2.8	0	secondary metabolism.N misc.alkaloid-like	"strictosidine synthase family protein  similar to YLS2 (yellow-leaf-specific gene 2), strictosidine synthase [Arabidopsis thaliana] (TAIR:AT3G51430.1); similar to mucin-like protein [Oryza sativa] (GB:AAG13594.1); contains InterPro domain Strictosidine s"
MSGI1_117432	NODE_29479_length_67_cov_32.000000	0.7	0	31.6	0	0	-6	-5.5	0	not assigned.unknown	not assigned.unknown
MSGI1_69283	NODE_29493_length_184_cov_10.766304	2.9	4.2	21.8	0.8	0	-4.8	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_35479	NODE_29495_length_324_cov_12.037037	7.2	10	51.7	7.7	0	-2.7	-2.8	0	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2) Leucine zipper transcription factor that binds to the abscisic acid (ABA)?responsive element (ABRE) motif in the promoter region of ABA-inducible genes. Enhances drought tolerance in vegetative ti
MSGI1_35479	NODE_29495_length_324_cov_12.037037	7.2	10	51.7	7.7	0	-2.7	-2.8	0	RNA.regulation of transcription.bZIP transcription factor family	ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1); DNA binding / transcription factor/ transcriptional activator Identified as a protein that binds to abscisic acid response elements. May mediate transcriptional regulation of ABA responses. simila
MSGI1_81229	NODE_29499_length_160_cov_23.056250	0.3	0.1	50.8	2.3	0	-4.5	-7.4	0	not assigned.unknown	not assigned.unknown
MSGI1_110791	NODE_29500_length_122_cov_16.696722	13.4	43.2	19.6	14.8	1.7	0	0	1.5	not assigned.unknown	not assigned.unknown
MSGI1_32764	NODE_29522_length_344_cov_8.686047	10.1	40.7	9.1	26.4	2	0	0	0	cell wall.cellulose synthesis.cellulose synthase	"IRX3 (IRREGULAR XYLEM 3, MURUS 10); cellulose synthase encodes a xylem-specific cellulose synthase Identical to Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) (CESA7) [Arabidopsis Thal"
MSGI1_57854	NODE_29527_length_216_cov_6.703704	5.2	12	38	8.1	0	-2.2	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_30414	NODE_29528_length_365_cov_13.756165	2.7	10.7	19.2	1.6	0	-3.6	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_44293	NODE_2953_length_272_cov_38.349266	2.5	1.7	43	2	0	-4.4	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_115972	NODE_29532_length_79_cov_134.430374	27.5	15.2	4.9	15.4	0	0	2.5	0	stress.abiotic.heat	BIP (LUMINAL BINDING PROTEIN); ATP binding luminal binding protein (BiP) Identical to Luminal-binding protein 2 precursor (BiP2) (AtBP2) [Arabidopsis Thaliana] (GB:Q39043;GB:Q39042); Identical to Luminal-binding protein 1 precursor (BiP1) (AtBP1) [Arabido
MSGI1_82408	NODE_29538_length_158_cov_10.158228	30.7	14	9.5	22.2	0	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_32435	NODE_2954_length_347_cov_76.389046	61.5	36.9	0.1	0	0	0	9.3	6.2	not assigned.unknown	not assigned.unknown
MSGI1_121613	NODE_29540_length_61_cov_20.721312	13.2	12.4	0	0	0	0	4.7	4.6	not assigned.unknown	not assigned.unknown
MSGI1_48595	NODE_29542_length_252_cov_14.031746	1.4	3.8	24.9	12.9	0	0	-4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_51088	NODE_29544_length_241_cov_6.680498	19.9	7.5	39.1	10.8	0	-1.9	0	0	misc.UDP glucosyl and glucoronyl transferases	"UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G36780.1); similar to DOGT1 (DON-GLUCOSYLTRANSFERASE), UDP-glycosyltransferase/ transferase, tra"
MSGI1_39993	NODE_29547_length_295_cov_37.664406	46.7	1.6	6.7	1.8	-4.9	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_75758	NODE_29551_length_170_cov_12.270588	6.7	7.1	28.2	12.8	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_32668	NODE_29558_length_345_cov_19.243479	19.5	19.9	0	0	0	0	5.3	5.3	protein.targeting.nucleus	"cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative  Identical to Importin-alpha re-exporter (Cellular apoptosis susceptibility protein homolog) (CAS) [Arabidopsis Thaliana] (GB:Q9ZPY7;GB:Q56WE2;GB:Q7GA14); similar"
MSGI1_32668	NODE_29558_length_345_cov_19.243479	19.5	19.9	0	0	0	0	5.3	5.3	stress.biotic	"cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative  Identical to Importin-alpha re-exporter (Cellular apoptosis susceptibility protein homolog) (CAS) [Arabidopsis Thaliana] (GB:Q9ZPY7;GB:Q56WE2;GB:Q7GA14); similar"
MSGI1_121608	NODE_29562_length_61_cov_17.213116	0	0	20.7	2.9	0	-2.8	-5.4	0	not assigned.unknown	not assigned.unknown
MSGI1_107775	NODE_29563_length_125_cov_6.216000	0	0	13.8	2.7	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_105830	NODE_29566_length_127_cov_40.401573	35.5	9.4	0	0	-1.9	0	6.1	0	not assigned.unknown	not assigned.unknown
MSGI1_102121	NODE_29569_length_131_cov_11.267176	1.2	1.9	22	3.4	0	-2.7	-4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_114559	NODE_29574_length_92_cov_16.554348	0.9	1.4	16.9	1	0	-4.1	-4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_106785	NODE_29580_length_126_cov_8.142858	0.1	0.2	7.5	13.4	0	0	0	-6.1	stress.biotic	"disease resistance protein (CC-NBS-LRR class), putative  Identical to Putative disease resistance protein At5g47260 [Arabidopsis Thaliana] (GB:Q9LVT3); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G63"
MSGI1_106784	NODE_29588_length_126_cov_4.246032	2.3	3.7	18.2	3.5	0	0	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_91020	NODE_2960_length_145_cov_49.958622	15.7	27.3	8.5	7.1	0	0	0	1.9	not assigned.unknown	not assigned.unknown
MSGI1_25394	NODE_2960_length_422_cov_153.710907	105.3	23.8	67.6	58.1	-2.1	0	0	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_68430	NODE_29609_length_186_cov_28.091398	29.3	13.4	1.6	0.8	0	0	4.2	4.1	transport.misc	MATE efflux family protein  similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT4G00350.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE85324.1); similar to putative anthocyanin permease [Lycopersico
MSGI1_117581	NODE_29611_length_66_cov_20.242424	0	0	17.6	3.6	0	0	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_102120	NODE_29612_length_131_cov_11.725191	12.2	9	51.6	7.6	0	-2.8	-2.1	0	transport.amino acids	ATPTR2-B (NITRATE TRANSPORTER 1); transporter Encodes a peptide transport gene that mediates the transport of di- and tripeptides. Identical to Peptide transporter PTR2 (Histidine-transporting protein) (PTR2) [Arabidopsis Thaliana] (GB:P46032); similar t
MSGI1_102120	NODE_29612_length_131_cov_11.725191	12.2	9	51.6	7.6	0	-2.8	-2.1	0	transport.peptides and oligopeptides	ATPTR2-B (NITRATE TRANSPORTER 1); transporter Encodes a peptide transport gene that mediates the transport of di- and tripeptides. Identical to Peptide transporter PTR2 (Histidine-transporting protein) (PTR2) [Arabidopsis Thaliana] (GB:P46032); similar t
MSGI1_86899	NODE_29613_length_151_cov_5.503311	0.1	0.1	11.5	4.5	0	0	-6.8	0	not assigned.unknown	not assigned.unknown
MSGI1_121604	NODE_29643_length_61_cov_154.016388	353.4	176.6	0	0	0	0	9.5	8.5	not assigned.unknown	not assigned.unknown
MSGI1_121603	NODE_29652_length_61_cov_14.278688	16.6	8.6	0	0	0	0	5.1	0	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2A.3 (HTA2) [Arabidopsis Thaliana] (GB:O81826;GB:Q8L8Z9); similar to RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5), DNA binding [Arabidopsis thaliana] (TAIR:AT5G54640.1); similar to Protein H2A.7"
MSGI1_5810	NODE_29677_length_985_cov_45.760406	40.4	43.5	13.3	25.9	0	0	1.6	0	RNA.regulation of transcription.C2H2 zinc finger family	RNA recognition motif (RRM)-containing protein  similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G22100.1); similar to RNA-binding protein [Gymnadenia conopsea] (GB:ABD66518.1); contains InterPro domain Nucleotide
MSGI1_5810	NODE_29677_length_985_cov_45.760406	40.4	43.5	13.3	25.9	0	0	1.6	0	RNA.RNA binding	"GR-RBP3 (glycine-rich RNA-binding protein 3); RNA binding encodes a glycine-rich RNA binding protein. Gene expression is induced by cold. similar to GR-RBP5 (glycine-rich RNA-binding protein 5), RNA binding [Arabidopsis thaliana] (TAIR:AT1G74230.1); simi"
MSGI1_52944	NODE_29678_length_234_cov_10.175214	2.8	4.5	14	28	0	0	0	-2.6	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	transcription factor-related  similar to transcription factor [Arabidopsis thaliana] (TAIR:AT1G64625.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABD32181.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011
MSGI1_47064	NODE_2968_length_259_cov_37.305019	26	23.9	45.7	16.6	0	-1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_94019	NODE_29682_length_141_cov_4.085106	8.1	10.3	34.2	11.9	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_121601	NODE_29683_length_61_cov_20.016394	12.5	8.8	0	0	0	0	4.6	0	protein.synthesis.initiation	"eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative  similar to EIF2 ALPHA (eukaryotic translation initiation factor 2 alpha subunit), RNA binding [Arabidopsis thaliana] (TAIR:AT5G05470.1); similar to"
MSGI1_121600	NODE_29685_length_61_cov_37.131149	18.1	13.5	2.8	5.4	0	0	2.7	0	protein.synthesis.initiation	"eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative  similar to EIF2 ALPHA (eukaryotic translation initiation factor 2 alpha subunit), RNA binding [Arabidopsis thaliana] (TAIR:AT5G05470.1); similar to"
MSGI1_121599	NODE_29692_length_61_cov_25.475410	20.1	6.8	1.6	2.5	0	0	3.7	0	DNA.synthesis/chromatin structure.histone	"histone H2B, putative  Identical to Histone H2B.1 (HTB1) [Arabidopsis Thaliana] (GB:Q9LQQ4;GB:Q8L950); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold; (InterPro:"
MSGI1_110788	NODE_29695_length_122_cov_5.467213	1.7	3.7	10.1	21.4	0	0	0	-2.5	not assigned.unknown	not assigned.unknown
MSGI1_121598	NODE_29696_length_61_cov_62.754097	33.9	5.6	6	6.6	-2.6	0	2.5	0	cell wall.degradation.pectate lyases and polygalacturonases	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G41870.1); similar to Os05g0587000 [Oryz
MSGI1_50438	NODE_29700_length_244_cov_20.434425	7	17.7	26.7	21.1	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_91019	NODE_29708_length_145_cov_11.089655	1.7	1.2	25.2	18.5	0	0	-3.9	-3.9	not assigned.unknown	not assigned.unknown
MSGI1_36573	NODE_29721_length_316_cov_13.968354	9.1	10.9	229.7	5.8	0	-5.3	-4.7	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 1); transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Loss of function mutant has abnormally shaped leaves and stems. Identical to Homeobox-leucine zipper protein ATHB-12
MSGI1_26270	NODE_29727_length_411_cov_62.386860	63.5	43.9	37	73.4	0	1	0	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S17 (RPS17A)  Identical to 40S ribosomal protein S17-1 (RPS17A) [Arabidopsis Thaliana] (GB:P49205;GB:Q9SJD0); similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT5G04800.4); similar to 40S ribosomal protein S
MSGI1_95518	NODE_29734_length_139_cov_6.287770	0.1	0	12.6	6.8	0	0	-7	0	not assigned.unknown	not assigned.unknown
MSGI1_121594	NODE_29744_length_61_cov_30.901640	19.2	11.3	56.2	4.1	0	-3.8	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_101296	NODE_29745_length_132_cov_11.765152	0.2	0.3	13.6	22.6	0	0	-6.1	-6.2	not assigned.unknown	not assigned.unknown
MSGI1_114158	NODE_29756_length_96_cov_26.666666	0	0	33.9	0	0	-6.1	-6.1	0	not assigned.unknown	not assigned.unknown
MSGI1_112164	NODE_29764_length_112_cov_18.294643	3.3	2.9	13	0.9	0	-3.9	0	0	protein.degradation.cysteine protease	"cysteine proteinase, putative  similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G48350.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (Int"
MSGI1_24851	NODE_29769_length_429_cov_19.836830	20	4.2	1.4	2.6	-2.3	0	3.8	0	cell wall.cell wall proteins.LRR	"leucine-rich repeat family protein / extensin family protein  similar to LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2), protein binding / structural constituent of cell wall [Arabidopsis thaliana] (TAIR:AT1G62440.1); similar to leucine-rich repeat family protein"
MSGI1_69726	NODE_29773_length_183_cov_8.622951	31.4	9.8	11.7	11.5	-1.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_57207	NODE_29785_length_218_cov_65.766052	39.9	33	15.8	25.3	0	0	1.3	0	lipid metabolism.FA synthesis and FA elongation.long chain fatty acid CoA ligase	"long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative  similar to long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase [Arabidopsis thaliana] (TAIR:AT4G23850.1); similar to LACS2 (LONG-CHAIN ACYL-COA SYNTHET"
MSGI1_121588	NODE_29788_length_61_cov_27.229507	24.6	21	0	0	0	0	5.6	5.4	TCA / org. transformation.TCA.2-oxoglutarate dehydrogenase	"2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative  similar to 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglu"
MSGI1_113692	NODE_29790_length_100_cov_43.320000	44.5	5.3	7.6	5.9	-3.1	0	2.5	0	cell wall.degradation.pectate lyases and polygalacturonases	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G41870.1); similar to Os05g0587000 [Oryz
MSGI1_47062	NODE_29805_length_259_cov_10.633204	0.6	1	25.6	5.5	0	-2.2	-5.4	0	not assigned.unknown	not assigned.unknown
MSGI1_59667	NODE_29815_length_210_cov_11.047619	15	1.8	4.1	2.2	-3.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_121584	NODE_2984_length_61_cov_17.655737	10.8	45.8	30.7	9.1	2.1	-1.8	0	2.3	RNA.regulation of transcription.C3H zinc finger family	zinc finger (CCCH-type) family protein  similar to CZF1/ZFAR1 [Arabidopsis thaliana] (TAIR:AT2G40140.2); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro
MSGI1_94777	NODE_29841_length_140_cov_10.271428	4.6	3.3	16.2	1.5	0	-3.4	0	0	transport.calcium	ATTPC1 (TWO-PORE CHANNEL 1); calcium channel/ voltage-gated calcium channel Encodes a depolarization-activated Ca(2+) channel. Anti-sense experiments with this gene as well as Sucrose-H(+) symporters and complementation of yeast sucrose uptake mutant cch
MSGI1_11271	NODE_29842_length_714_cov_32.141457	38.1	14.2	20.7	8.1	-1.4	0	0	0	cell wall	"GATL1/GLZ1/PARVUS (Galacturonosyltransferase-like 1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with  putative galacturonosyltransferase act"
MSGI1_11271	NODE_29842_length_714_cov_32.141457	38.1	14.2	20.7	8.1	-1.4	0	0	0	misc.UDP glucosyl and glucoronyl transferases	"GATL1/GLZ1/PARVUS (Galacturonosyltransferase-like 1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with  putative galacturonosyltransferase act"
MSGI1_24304	NODE_2985_length_436_cov_14.612386	0	0	36.4	27.5	0	0	-6.2	-5.8	not assigned.unknown	not assigned.unknown
MSGI1_76238	NODE_29853_length_169_cov_33.704144	56.6	42.8	16.1	49.1	0	1.6	1.8	0	RNA.transcription	transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)  Identical to Transcription initiation factor IIB-2 (General transcription factor TFIIB-2) (AtTFIIB2) (TFIIB2) [Arabidopsis Thaliana] (GB:Q9SS44;GB:P92972); similar to
MSGI1_53972	NODE_29854_length_230_cov_15.273913	5.7	14.4	33.7	4.8	0	-2.8	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_114680	NODE_29854_length_91_cov_11.637362	9.9	13.7	0.6	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_82407	NODE_29856_length_158_cov_10.727848	0	0	13.3	13.3	0	0	-4.7	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_96338	NODE_29858_length_138_cov_2.898551	0	0	15.1	6	0	0	-4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_70610	NODE_29861_length_181_cov_6.232044	3.8	14.6	183.3	0.6	0	-8.3	-5.6	4.6	not assigned.unknown	not assigned.unknown
MSGI1_15716	NODE_29863_length_585_cov_10.321367	14.4	31	0.6	0.5	0	0	4.6	6	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G27180.1); similar to TIR-NBS disease resistance-like protein [Populus trichocarpa] (GB:ABB82029"
MSGI1_15716	NODE_29863_length_585_cov_10.321367	14.4	31	0.6	0.5	0	0	4.6	6	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_58125	NODE_29867_length_215_cov_15.767442	15.1	23.1	1.8	8	0	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_23724	NODE_29871_length_445_cov_10.995505	4.3	4.6	19.6	24.1	0	0	0	-2.4	protein.degradation.ubiquitin.E3.RING	ubiquitin-protein ligase  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G69330.1); similar to Os03g0211100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049345.1); similar to Os03g0427100 [Oryza sativ
MSGI1_22636	NODE_29889_length_461_cov_12.290672	8.7	12	40.8	25.7	0	0	-2.2	0	lipid metabolism.FA synthesis and FA elongation.long chain fatty acid CoA ligase	"long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)  similar to LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9), long-chain-fatty-acid-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G77590.1); similar to Os05g031"
MSGI1_111809	NODE_29926_length_115_cov_41.843479	39	42.7	71.5	111	0	0	0	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_78875	NODE_29926_length_164_cov_8.158537	1.2	5.7	1.5	19.4	0	3.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_3782	NODE_29939_length_1201_cov_10.838468	6.5	115.1	19.5	136.4	4.1	2.8	0	0	cell wall	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_3782	NODE_29939_length_1201_cov_10.838468	6.5	115.1	19.5	136.4	4.1	2.8	0	0	protein.degradation.subtilases	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_34940	NODE_2994_length_328_cov_172.228653	101.8	33.6	24.2	86.3	-1.6	1.8	2.1	-1.4	misc.UDP glucosyl and glucoronyl transferases	"UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22340.1); similar to transcription factor/ transferase, transferring glycosyl groups [Arabidops"
MSGI1_102118	NODE_2995_length_131_cov_134.053436	108	133.1	78.2	183.6	0	1.2	0	0	cell wall.cell wall proteins.AGPs	FLA11 (fasciclin-like arabinogalactan-protein 11)  Identical to Fasciclin-like arabinogalactan protein 11 precursor (FLA11) [Arabidopsis Thaliana] (GB:Q8LEJ6;GB:Q9LYW8); similar to FLA12 (fasciclin-like arabinogalactan-protein 12) [Arabidopsis thaliana] (
MSGI1_114679	NODE_29978_length_91_cov_17.186813	18	0.4	1	0.3	-5.5	0	4.2	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G29660.1); similar to GDSL-lipase 1 [Capsicum annuum] (GB:AAZ23955.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; ("
MSGI1_98682	NODE_29979_length_135_cov_44.451851	31.5	23.7	85	96.4	0	0	-1.4	-2	not assigned.unknown	not assigned.unknown
MSGI1_35185	NODE_2998_length_326_cov_9.911043	65.7	9.2	43.3	2.7	-2.8	-4	0	0	stress.abiotic.cold	RCI2B (RARE-COLD-INDUCIBLE 2B)  Identical to Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B) (RCI2B) [Arabidopsis Thaliana] (GB:Q9ZNS6;GB:Q9M9K9); similar to RCI2A (RARE-COLD-INDUCIBLE 2A) [Arabidopsis thaliana] (TAIR:AT3G05
MSGI1_35185	NODE_2998_length_326_cov_9.911043	65.7	9.2	43.3	2.7	-2.8	-4	0	0	stress.abiotic.drought/salt	RCI2B (RARE-COLD-INDUCIBLE 2B)  Identical to Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B) (RCI2B) [Arabidopsis Thaliana] (GB:Q9ZNS6;GB:Q9M9K9); similar to RCI2A (RARE-COLD-INDUCIBLE 2A) [Arabidopsis thaliana] (TAIR:AT3G05
MSGI1_121575	NODE_29980_length_61_cov_13.180327	6.3	12.4	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_121573	NODE_29992_length_61_cov_97.114754	57.1	34.9	0.4	0	0	0	7.2	6.1	TCA / org. transformation.other organic acid transformaitons.atp-citrate lyase	ACLB-1 (ATP-citrate lyase B-1) One of the two genes encoding subunit B of the trimeric enzyme ATP Citrate lyase similar to ACLB-2 (ATP-citrate lyase B-2) [Arabidopsis thaliana] (TAIR:AT5G49460.1); similar to ATP citrate lyase a-subunit [Lupinus albus] (G
MSGI1_114769	NODE_29996_length_90_cov_153.544449	27.2	64.5	55.8	60.7	1.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_77235	NODE_29997_length_167_cov_37.197605	40.3	47.4	34.3	92.1	0	1.4	0	0	amino acid metabolism.degradation.serine-glycine-cysteine group.cysteine	"ST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1); thiosulfate sulfurtransferase encodes a sulfurtransferase/rhodaneses, which belongs to a group of enzymes widely distributed in all three phyla that catalyze the transfer of sulfur from a donor to a thiophilic"
MSGI1_56134	NODE_30005_length_222_cov_5.445946	4.6	1.5	4.1	14.9	0	0	0	-3.3	amino acid metabolism.degradation.glutamate family.proline	"proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative  similar to ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5, PROLINE OXIDASE), proline dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G30775.1); similar to proline dehydrogenase"
MSGI1_42390	NODE_30006_length_282_cov_28.549644	17.1	27.7	0	0	0	0	5.1	5.8	not assigned.unknown	not assigned.unknown
MSGI1_25610	NODE_30012_length_419_cov_20.627686	59.9	12.8	52.3	41.9	-2.2	0	0	-1.7	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase, putative  similar to lipoxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G67560.1); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to LOX2 (LIPOXYGENASE 2) [Arabi"
MSGI1_89592	NODE_30015_length_147_cov_19.523809	5.4	0.7	8.6	17.4	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_94773	NODE_30018_length_140_cov_20.528572	17.9	16.7	3.1	5	0	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_77816	NODE_30019_length_166_cov_10.204820	0	0.4	32.4	21.5	0	0	-6	-5.7	not assigned.unknown	not assigned.unknown
MSGI1_103058	NODE_30020_length_130_cov_33.407692	4.8	4.1	40.2	2.4	0	-4.1	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_121569	NODE_30021_length_61_cov_13.049180	21.3	55	6.8	12.4	1.4	0	0	2.1	signalling.receptor kinases.leucine rich repeat XI	"BAM1 (big apical meristem 1); ATP binding / kinase/ protein serine/threonine kinase Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It ha"
MSGI1_121568	NODE_30023_length_61_cov_20.590164	6	11.5	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_97899	NODE_30040_length_136_cov_64.080879	34.4	12.1	6.9	14.5	-1.5	0	2.3	0	RNA.regulation of transcription.unclassified	LOL1 (LSD ONE LIKE 1) Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death. similar to LSD1 (LESION SIMULATING DISEASE) [Arabidopsis thaliana] (TAIR:AT4G20380.7); similar to LSD-One-Like 1 [Brassica
MSGI1_68027	NODE_30042_length_187_cov_8.331551	5.6	42.6	2.7	20.8	2.9	2.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_33701	NODE_30053_length_337_cov_3.833828	1.2	5.2	16.3	2.8	0	0	-3.8	0	protein.degradation.AAA type	"AAA-type ATPase family protein  similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT4G28000.1); similar to ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G52882.1); similar to AAA ATPase,"
MSGI1_68834	NODE_30054_length_185_cov_69.778381	64.5	40.1	24	32.1	0	0	1.4	0	cell wall.precursor synthesis.RHM	"RHM1/ROL1 (RHAMNOSE BIOSYNTHESIS1); UDP-glucose 4,6-dehydratase/ catalytic Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha.  The de"
MSGI1_81786	NODE_30060_length_159_cov_7.597484	3.1	7.7	19.2	8.9	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_79455	NODE_30062_length_163_cov_6.699387	0.5	1.2	16.5	0.7	0	-4.6	-5	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	basic helix-loop-helix (bHLH) family protein  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT3G25710.1); similar to Os08g0432800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061870.1); similar to Helix-loop-he
MSGI1_72466	NODE_30070_length_177_cov_17.158192	2.5	3	30.7	9.3	0	-1.7	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_46488	NODE_30071_length_262_cov_16.393129	19	6.9	31.1	5.9	0	-2.4	0	0	development.late embryogenesis abundant	late embryogenesis abundant family protein / LEA family protein  similar to LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) [Arabidopsis thaliana] (TAIR:AT1G01470.1); similar to Os03g0843300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051862.1); similar to
MSGI1_43473	NODE_30078_length_276_cov_12.938406	20.5	1.1	4.5	1.5	-4.2	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_94770	NODE_30080_length_140_cov_32.635715	40.3	29.7	11.1	36.4	0	1.7	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_20154	NODE_30081_length_501_cov_8.704591	5.2	12.1	32.3	6	0	-2.4	-2.6	0	protein.degradation.ubiquitin.E3.RING	"protein binding / zinc ion binding  similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G21500.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE79651.1); contains InterPro domain Zinc finger, RING-type; (InterP"
MSGI1_99519	NODE_30084_length_134_cov_12.380597	1.3	5.5	24.7	11.8	0	0	-4.2	0	RNA.regulation of transcription.unclassified	"ATMBF1C/MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator.  May serve as a brid"
MSGI1_99519	NODE_30084_length_134_cov_12.380597	1.3	5.5	24.7	11.8	0	0	-4.2	0	hormone metabolism.ethylene.induced-regulated-responsive-activated	"ATMBF1C/MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator.  May serve as a brid"
MSGI1_89591	NODE_30094_length_147_cov_9.482993	2.7	4.4	2.6	15.9	0	2.6	0	0	"misc.gluco-, galacto- and mannosidases"	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_89591	NODE_30094_length_147_cov_9.482993	2.7	4.4	2.6	15.9	0	2.6	0	0	major CHO metabolism.degradation.starch.starch cleavage	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_112941	NODE_30095_length_106_cov_9.235849	16.9	7.5	0	0	0	0	5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_86180	NODE_30102_length_152_cov_8.072369	4.7	3	16.7	2.4	0	-2.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_114157	NODE_30104_length_96_cov_82.927086	71.7	25.9	15.2	7.7	-1.5	0	2.2	0	cell wall.cell wall proteins.AGPs	"FLA2 (FLA2) AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds Identical to Fasciclin-like arabinogalactan protein 2 precursor (FLA2) [Arabidopsis Thaliana] (GB:Q9SU13;GB:Q8L9T2;GB:Q9C5Q6); similar to FLA1 (F"
MSGI1_47953	NODE_30105_length_255_cov_4.890196	30.2	0	4.3	0	-5.9	0	2.8	0	cell wall	"gibberellin-responsive protein, putative  similar to GASA4 (GAST1 PROTEIN HOMOLOG 4) [Arabidopsis thaliana] (TAIR:AT5G15230.1); similar to Gip1-like protein [Populus tomentosa] (GB:AAV84588.1); contains InterPro domain Gibberellin regulated protein; (Int"
MSGI1_47953	NODE_30105_length_255_cov_4.890196	30.2	0	4.3	0	-5.9	0	2.8	0	hormone metabolism.gibberelin.induced-regulated-responsive-activated	"gibberellin-responsive protein, putative  similar to GASA4 (GAST1 PROTEIN HOMOLOG 4) [Arabidopsis thaliana] (TAIR:AT5G15230.1); similar to Gip1-like protein [Populus tomentosa] (GB:AAV84588.1); contains InterPro domain Gibberellin regulated protein; (Int"
MSGI1_75247	NODE_30106_length_171_cov_5.339181	0	0	11.3	0.2	0	-5.8	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_49278	NODE_30113_length_249_cov_4.799197	46.6	9.9	7	6.3	-2.2	0	2.7	0	amino acid metabolism.synthesis.aspartate family.methionine.S-adenosylmethionine synthetase	"MAT3 (METHIONINE ADENOSYLTRANSFERASE 3); methionine adenosyltransferase  similar to SAM1 (S-adenosylmethionine synthetase 1), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT1G02500.2); similar to MTO3 (S-adenosylmethionine synthase 3), met"
MSGI1_49278	NODE_30113_length_249_cov_4.799197	46.6	9.9	7	6.3	-2.2	0	2.7	0	"metal handling.binding, chelation and storage"	"MAT3 (METHIONINE ADENOSYLTRANSFERASE 3); methionine adenosyltransferase  similar to SAM1 (S-adenosylmethionine synthetase 1), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT1G02500.2); similar to MTO3 (S-adenosylmethionine synthase 3), met"
MSGI1_76778	NODE_30125_length_168_cov_13.136905	1.5	3.6	17	3.1	0	0	-3.5	0	misc.cytochrome P450	"CYP716A2 (cytochrome P450, family 716, subfamily A, polypeptide 2); heme binding / iron ion binding / monooxygenase member of CYP716A similar to CYP716A1 (cytochrome P450, family 716, subfamily A, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TA"
MSGI1_7294	NODE_30133_length_894_cov_14.055928	20.5	3.7	6.5	2.7	-2.5	0	0	0	amino acid metabolism.synthesis.central amino acid metabolism.alanine.alanine-glyoxylate aminotransferase	"AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2); alanine-glyoxylate transaminase alanine:glyoxylate aminotransferase 2 homolog (AGT2) mRNA, Identical to Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial precursor (EC 2.6.1.44) (Beta-alanine-py"
MSGI1_89590	NODE_30134_length_147_cov_6.054422	0	0.1	13.1	6.5	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_93213	NODE_30138_length_142_cov_31.823944	24.7	1.7	4.1	3.5	-3.9	0	2.6	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	ELI3-1 (ELICITOR-ACTIVATED GENE 3); oxidoreductase/ zinc ion binding Encodes a putative mannitol dehydrogenase. Identical to Probable mannitol dehydrogenase 1 (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase 1) (ELI3-1) [Arabidopsis Thaliana] (GB:Q02
MSGI1_62671	NODE_30144_length_201_cov_21.248756	3.6	21.9	5.6	8.2	2.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_24007	NODE_3015_length_440_cov_326.859100	169	101.4	32	61	0	0	2.4	0	protein.synthesis.misc ribososomal protein	"EMB3010 (EMBRYO DEFECTIVE 3010); structural constituent of ribosome  Identical to 40S ribosomal protein S6-2 (RPS6B) [Arabidopsis Thaliana] (GB:P51430;GB:O04670;GB:Q9LX91); similar to RPS6 (RIBOSOMAL PROTEIN S6), structural constituent of ribosome [Arabi"
MSGI1_16874	NODE_30156_length_560_cov_6.580357	0	0	11.5	12.8	0	0	-4.5	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_47059	NODE_3018_length_259_cov_66.803085	71.9	64.2	0.2	0	0	0	8.5	7	not assigned.unknown	not assigned.unknown
MSGI1_8184	NODE_3019_length_848_cov_36.311321	52.5	41.5	0.1	0	0	0	9	6.4	not assigned.unknown	not assigned.unknown
MSGI1_71079	NODE_30198_length_180_cov_4.994444	6	18.3	4.8	20.8	0	2.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_55870	NODE_30202_length_223_cov_24.044844	27.3	39.5	0	0	0	0	5.8	6.3	signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase	phosphatidylinositol-4-phosphate 5-kinase family protein  similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT3G14270.1); similar to 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding [Arabidopsis
MSGI1_39817	NODE_30206_length_296_cov_10.006757	4.3	1.5	22.6	2.8	0	-3	-2.4	0	transport.peptides and oligopeptides	"proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G52190.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32296.1); sim"
MSGI1_42587	NODE_3021_length_281_cov_94.907471	9.5	5.6	47.1	1.9	0	-4.6	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_121549	NODE_30230_length_61_cov_62.344261	41.6	12.8	26.7	28.8	-1.7	0	0	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"RPL9 (ribosomal protein L9); structural constituent of ribosome Plastid ribosomal protein CL9 Identical to 50S ribosomal protein L9, chloroplast precursor (CL9) (RPL9) [Arabidopsis Thaliana] (GB:P25864); similar to 50S ribosomal protein L9, chloroplast p"
MSGI1_61642	NODE_30232_length_204_cov_8.637255	0	0	6.2	12.1	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_115661	NODE_30234_length_82_cov_14.024390	0	0	8.9	13.4	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_45371	NODE_3026_length_267_cov_15.528090	18.2	18.9	0.1	0	0	0	7.5	5.2	stress	"stress-inducible protein, putative  similar to stress-inducible protein, putative [Arabidopsis thaliana] (TAIR:AT1G12270.1); similar to binding [Arabidopsis thaliana] (TAIR:AT4G12400.2); similar to Os02g0644100 [Oryza sativa (japonica cultivar-group)] (G"
MSGI1_82402	NODE_30261_length_158_cov_7.240506	8.1	41.7	1.6	2.1	2.4	0	0	4.3	RNA.regulation of transcription.C2H2 zinc finger family	STZ (SALT TOLERANCE ZINC FINGER); nucleic acid binding / transcription factor/ zinc ion binding Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by
MSGI1_82402	NODE_30261_length_158_cov_7.240506	8.1	41.7	1.6	2.1	2.4	0	0	4.3	stress	STZ (SALT TOLERANCE ZINC FINGER); nucleic acid binding / transcription factor/ zinc ion binding Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by
MSGI1_101287	NODE_30278_length_132_cov_5.909091	2.6	3.3	66.2	0.8	0	-6.4	-4.7	0	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase	"NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE3) Encodes  9-<i>cis</i>-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chl"
MSGI1_117316	NODE_30279_length_68_cov_181.764709	55.6	1	12.5	2.3	-5.8	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_108769	NODE_30283_length_124_cov_64.895164	46	46.9	70.8	31.7	0	-1.2	0	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	HAT22 (homeobox-leucine zipper protein 22); transcription factor Encodes homeobox protein HAT22. Identical to Homeobox-leucine zipper protein HAT22 (Homeodomain-leucine zipper protein HAT22) (HD-ZIP protein 22) (HAT22) [Arabidopsis Thaliana] (GB:P46604;G
MSGI1_108769	NODE_30283_length_124_cov_64.895164	46	46.9	70.8	31.7	0	-1.2	0	0	development.unspecified	HAT22 (homeobox-leucine zipper protein 22); transcription factor Encodes homeobox protein HAT22. Identical to Homeobox-leucine zipper protein HAT22 (Homeodomain-leucine zipper protein HAT22) (HD-ZIP protein 22) (HAT22) [Arabidopsis Thaliana] (GB:P46604;G
MSGI1_49277	NODE_30288_length_249_cov_9.104418	0.6	0.3	23.3	0.6	0	-5.3	-5.3	0	not assigned.unknown	not assigned.unknown
MSGI1_114991	NODE_303_length_88_cov_660.215881	110.9	103.3	30.7	163.8	0	2.4	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_110778	NODE_30311_length_122_cov_17.360655	9.2	0.6	36.1	1.4	0	-4.7	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_86178	NODE_30312_length_152_cov_87.486839	65.2	87	9.8	20	0	0	2.7	2.1	RNA.regulation of transcription.SNF7	SNF7 family protein  similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT1G73030.1); similar to putative developmental protein [Nicotiana benthamiana] (GB:AAO59435.1); contains InterPro domain Snf7; (InterPro:IPR005024)
MSGI1_59353	NODE_30315_length_211_cov_10.744076	13.8	14.1	0	0	0	0	4.8	4.8	not assigned.unknown	not assigned.unknown
MSGI1_22051	NODE_30322_length_469_cov_8.882730	2.3	2.7	17.5	7.2	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_121543	NODE_30330_length_61_cov_31.409836	20	17.1	17.6	44.9	0	1.4	0	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_39097	NODE_30342_length_300_cov_7.283333	6.7	2.7	14.7	1.5	0	-3.3	0	0	cell wall	"S-locus lectin protein kinase family protein  similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G11410.1); similar to ARK3 (Arabidopsis Receptor Kinase 3), kinase [Arabidopsis thaliana] (TAIR:AT4G21380.1); similar to ARK2 (Arabi"
MSGI1_39097	NODE_30342_length_300_cov_7.283333	6.7	2.7	14.7	1.5	0	-3.3	0	0	protein.postranslational modification	"S-locus lectin protein kinase family protein  similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G11410.1); similar to ARK3 (Arabidopsis Receptor Kinase 3), kinase [Arabidopsis thaliana] (TAIR:AT4G21380.1); similar to ARK2 (Arabi"
MSGI1_39097	NODE_30342_length_300_cov_7.283333	6.7	2.7	14.7	1.5	0	-3.3	0	0	misc.myrosinases-lectin-jacalin	"S-locus lectin protein kinase family protein  similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G11410.1); similar to ARK3 (Arabidopsis Receptor Kinase 3), kinase [Arabidopsis thaliana] (TAIR:AT4G21380.1); similar to ARK2 (Arabi"
MSGI1_39097	NODE_30342_length_300_cov_7.283333	6.7	2.7	14.7	1.5	0	-3.3	0	0	cell wall	"S-locus lectin protein kinase family protein  similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G11410.1); similar to ARK3 (Arabidopsis Receptor Kinase 3), kinase [Arabidopsis thaliana] (TAIR:AT4G21380.1); similar to ARK2 (Arabi"
MSGI1_25393	NODE_30343_length_422_cov_7.312796	6	2.3	16.2	0.8	0	-4.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_39815	NODE_30346_length_296_cov_8.229730	3.9	5.7	27.2	5.1	0	-2.4	-2.8	0	transport.ABC transporters and multidrug resistance systems	ABC transporter family protein  Identical to Probable white-brown complex homolog protein 28 (WBC28) [Arabidopsis Thaliana] (GB:Q9FT51); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT5G06530.1); similar to Putative ABC transport
MSGI1_58121	NODE_30348_length_215_cov_12.497674	0.4	3.1	31	4.2	0	-2.9	-6.3	0	not assigned.unknown	not assigned.unknown
MSGI1_93211	NODE_3035_length_142_cov_20.859156	19.6	15.5	0	0	0	0	5.3	5	major CHO metabolism.degradation.starch.transporter	GLT1/PGLCT (GLUCOSE TRANSPORTER 1); carbohydrate transporter/ sugar porter Encodes a putative plastidic glucose transporter. Identical to Plastidic glucose transporter 4 (AtpGlcT) [Arabidopsis Thaliana] (GB:Q56ZZ7;GB:Q93Z41;GB:Q9LF13;GB:Q9LLD8); similar
MSGI1_93211	NODE_3035_length_142_cov_20.859156	19.6	15.5	0	0	0	0	5.3	5	transporter.sugars	GLT1/PGLCT (GLUCOSE TRANSPORTER 1); carbohydrate transporter/ sugar porter Encodes a putative plastidic glucose transporter. Identical to Plastidic glucose transporter 4 (AtpGlcT) [Arabidopsis Thaliana] (GB:Q56ZZ7;GB:Q93Z41;GB:Q9LF13;GB:Q9LLD8); similar
MSGI1_72464	NODE_30353_length_177_cov_7.706215	12.7	1.6	18	3	0	-2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_114677	NODE_30356_length_91_cov_37.219780	19.5	0.7	0	0	-4.8	0	5.3	0	not assigned.unknown	not assigned.unknown
MSGI1_50436	NODE_30358_length_244_cov_10.377049	1.7	21.3	10.5	27.2	3.6	0	0	0	transport.ABC transporters and multidrug resistance systems	"P-glycoprotein, putative  Identical to Putative multidrug resistance protein 21 (P-glycoprotein 22) (MDR21) [Arabidopsis Thaliana] (GB:Q9LSJ2); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G28345.1); similar to PGP18 (P-GLYCO"
MSGI1_39814	NODE_30361_length_296_cov_13.206081	9.1	11.6	18.2	33	0	0	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_114155	NODE_30364_length_96_cov_27.875000	13.6	8	0	0	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_90280	NODE_30367_length_146_cov_4.047945	0	0	10.1	16.5	0	0	0	-5	not assigned.unknown	not assigned.unknown
MSGI1_47482	NODE_30368_length_257_cov_15.338521	4.5	4.9	21.3	10.1	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_78344	NODE_30370_length_165_cov_8.587879	2.7	4.6	19.2	16	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_90279	NODE_30375_length_146_cov_114.527397	62.9	31.6	21.1	24.2	0	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_121540	NODE_3038_length_61_cov_97.590164	21.6	29.1	0	0	0	0	5.4	5.9	not assigned.unknown	not assigned.unknown
MSGI1_89587	NODE_30386_length_147_cov_9.591837	0	0	11.2	20	0	0	-4.5	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_28401	NODE_3039_length_386_cov_10.028498	15	0.1	2.4	0.1	-7.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_121539	NODE_30395_length_61_cov_95.032784	33.8	16.5	0	0	0	0	6.1	5	protein.synthesis.misc ribososomal protein	"EMB3010 (EMBRYO DEFECTIVE 3010); structural constituent of ribosome  Identical to 40S ribosomal protein S6-2 (RPS6B) [Arabidopsis Thaliana] (GB:P51430;GB:O04670;GB:Q9LX91); similar to RPS6 (RIBOSOMAL PROTEIN S6), structural constituent of ribosome [Arabi"
MSGI1_85534	NODE_30396_length_153_cov_7.699347	8.8	12	0.2	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_121538	NODE_30408_length_61_cov_50.540985	16.4	19.4	23.9	48.6	0	0	0	-1.3	TCA / org. transformation.TCA.aconitase	"aconitase family protein / aconitate hydratase family protein  similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT4G26970.1); similar to 3-isopropylmalate dehydratase large subun"
MSGI1_121538	NODE_30408_length_61_cov_50.540985	16.4	19.4	23.9	48.6	0	0	0	-1.3	TCA / org. transformation.other organic acid transformaitons.aconitase	"aconitase family protein / aconitate hydratase family protein  similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT4G26970.1); similar to 3-isopropylmalate dehydratase large subun"
MSGI1_112535	NODE_30420_length_109_cov_14.522936	12.3	7.1	0	0.3	0	0	4.6	0	protein.synthesis.elongation	"ATSCO1/ATSCO1/CPEF-G (SNOWY COTYLEDON1); translation elongation factor/ translation factor, nucleic acid binding Nuclear encoded protein consists of the five domains conserved in EF-G proteins, with two GTP-binding sites in the first domain, and an addit"
MSGI1_79452	NODE_30425_length_163_cov_12.098160	11.7	14.1	0	0	0	0	4.5	4.8	protein.degradation.ubiquitin.proteasom	"26S proteasome regulatory subunit, putative  Identical to 26S proteasome non-ATPase regulatory subunit 14 (26S proteasome regulatory subunit rpn11) (RPN11) [Arabidopsis Thaliana] (GB:Q9LT08;GB:Q8LD11); similar to AJH2 (COP9-signalosome 5B), protein bindi"
MSGI1_71078	NODE_30425_length_180_cov_27.966667	19.4	43.7	64.8	22.5	0	-1.5	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_17743	NODE_30427_length_543_cov_19.650091	43.3	22.5	15.1	34.5	0	0	1.5	0	RNA.regulation of transcription.unclassified	"29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative  Identical to Putative ribonucleoprotein At2g37220, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9ZUU4); similar to CP29 (chloroplast 29 kDa ribonucleoprotein), RNA"
MSGI1_17743	NODE_30427_length_543_cov_19.650091	43.3	22.5	15.1	34.5	0	0	1.5	0	RNA.RNA binding	"29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative  Identical to Putative ribonucleoprotein At2g37220, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9ZUU4); similar to CP29 (chloroplast 29 kDa ribonucleoprotein), RNA"
MSGI1_91012	NODE_30428_length_145_cov_10.434483	9.4	9	39.6	28.2	0	0	-2.1	0	transporter.sugars	"hexose transporter, putative  Identical to Probable plastidic glucose transporter 2 [Arabidopsis Thaliana] (GB:Q9FYG3); similar to SGB1, carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G79820.2); similar to Sugar transporter [Medic"
MSGI1_28141	NODE_3043_length_389_cov_17.501286	0.3	0.4	23	29.3	0	0	-6.3	-6.2	transport.amino acids	amino acid transporter family protein  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G08230.2); similar to Os05g0586500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056462.1); similar to Os01g0621200 [Oryza sativa (japonica cultivar-gr
MSGI1_85533	NODE_30436_length_153_cov_10.235294	0	0	17.7	12.4	0	0	-5.1	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_121536	NODE_30437_length_61_cov_29.032787	17	1.1	8.8	4.5	-3.9	0	0	0	secondary metabolism.N misc.alkaloid-like	"FAD-binding domain-containing protein  similar to ATSEC1A, electron carrier [Arabidopsis thaliana] (TAIR:AT1G01980.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G20830.2); similar to FAD-binding domain-containing pr"
MSGI1_121536	NODE_30437_length_61_cov_29.032787	17	1.1	8.8	4.5	-3.9	0	0	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"FAD-binding domain-containing protein  similar to ATSEC1A, electron carrier [Arabidopsis thaliana] (TAIR:AT1G01980.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G20830.2); similar to FAD-binding domain-containing pr"
MSGI1_52675	NODE_30445_length_235_cov_51.740425	90.8	25.7	50.5	37.3	-1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_25438	NODE_3045_length_421_cov_170.133011	119.2	57.4	34.6	64.7	-1.1	0	1.8	0	protein.synthesis.misc ribososomal protein	60S acidic ribosomal protein P0 (RPP0B)  Identical to 60S acidic ribosomal protein P0-2 (RPP0B) [Arabidopsis Thaliana] (GB:Q42112;GB:Q8LCI7;GB:Q9SR42;GB:Q9SS70); similar to 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] (TAIR:AT3G11250.1);
MSGI1_83642	NODE_30450_length_156_cov_15.814102	2.5	3.9	13.2	28.9	0	0	0	-2.9	not assigned.unknown	not assigned.unknown
MSGI1_39299	NODE_30450_length_299_cov_18.060200	11.8	22	1.6	2.1	0	0	0	3.4	cell.organisation	"kinesin motor protein-related  similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT1G55550.1); similar to BY-2 kinesin-like protein 5 [Nicotiana tabacum] (GB:BAB40709.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR00"
MSGI1_27490	NODE_30450_length_396_cov_16.020203	12.8	9.4	0.1	0	0	0	7	0	not assigned.unknown	not assigned.unknown
MSGI1_96330	NODE_30452_length_138_cov_32.804348	3.9	16.9	53	57.7	0	0	-3.8	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_121534	NODE_30453_length_61_cov_24.459017	1.3	8.1	41.5	25.9	0	0	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_64512	NODE_30460_length_196_cov_10.275510	22.3	5.7	5.5	5.6	0	0	2	0	protein.degradation.serine protease	"SNG1 (SINAPOYLGLUCOSE 1); serine carboxypeptidase sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose. similar to SCPL9, serine carboxypeptidase [Arabidopsi"
MSGI1_36421	NODE_30462_length_317_cov_37.182964	47.1	55.1	11.1	40.3	0	1.9	2.1	0	cell wall	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to SLP2 (subtilisin-like serine protease 2), subtilase [Arabidopsis th"
MSGI1_36421	NODE_30462_length_317_cov_37.182964	47.1	55.1	11.1	40.3	0	1.9	2.1	0	protein.degradation.subtilases	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to SLP2 (subtilisin-like serine protease 2), subtilase [Arabidopsis th"
MSGI1_84930	NODE_30469_length_154_cov_5.701299	1.5	2.1	19.7	0.7	0	-4.8	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_111808	NODE_30470_length_115_cov_28.982609	25.5	15	8.6	30.6	0	1.8	0	0	"misc.gluco-, galacto- and mannosidases"	"RSW3 (RADIAL SWELLING 3); hydrolase, hydrolyzing O-glycosyl compounds radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme. similar to HGL1 (HETEROGLYCAN GLUCOSIDASE 1), hy"
MSGI1_111808	NODE_30470_length_115_cov_28.982609	25.5	15	8.6	30.6	0	1.8	0	0	major CHO metabolism.degradation.starch.starch cleavage	"RSW3 (RADIAL SWELLING 3); hydrolase, hydrolyzing O-glycosyl compounds radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme. similar to HGL1 (HETEROGLYCAN GLUCOSIDASE 1), hy"
MSGI1_77230	NODE_30484_length_167_cov_15.215569	3.7	14.3	0.2	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_35884	NODE_30486_length_321_cov_63.308411	16.6	18.7	2.4	7.5	0	0	2.8	0	RNA.regulation of transcription.C2H2 zinc finger family	RNA recognition motif (RRM)-containing protein  similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G22100.1); similar to RNA-binding protein [Gymnadenia conopsea] (GB:ABD66518.1); contains InterPro domain Nucleotide
MSGI1_35884	NODE_30486_length_321_cov_63.308411	16.6	18.7	2.4	7.5	0	0	2.8	0	RNA.RNA binding	"GR-RBP3 (glycine-rich RNA-binding protein 3); RNA binding encodes a glycine-rich RNA binding protein. Gene expression is induced by cold. similar to GR-RBP5 (glycine-rich RNA-binding protein 5), RNA binding [Arabidopsis thaliana] (TAIR:AT1G74230.1); simi"
MSGI1_83033	NODE_30487_length_157_cov_34.458599	41.7	103.8	3.1	1.8	1.3	0	3.7	5.8	not assigned.unknown	not assigned.unknown
MSGI1_107766	NODE_30488_length_125_cov_6.480000	0.6	1.2	4.2	14.5	0	0	0	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_43471	NODE_30489_length_276_cov_18.507246	8.2	13.4	0	0	0	0	0	4.7	protein.degradation	"peptidase M20/M25/M40 family protein  similar to DIP-1 [Citrullus lanatus] (GB:BAA95409.1); similar to acetylornithine deacetylase, putative [Brassica oleracea] (GB:ABD65618.1); similar to acetylornithine deacetylase, putative [Brassica oleracea] (GB:ABD"
MSGI1_56662	NODE_30497_length_220_cov_6.745454	5.3	5.8	26.8	9.3	0	0	-2.3	0	transport.ABC transporters and multidrug resistance systems	ABC transporter family protein  Identical to White-brown complex homolog protein 23 (WBC23) [Arabidopsis Thaliana] (GB:Q93YS4;GB:Q94EX0;GB:Q9FG17); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G52310.1); similar to Putative AB
MSGI1_117074	NODE_30506_length_70_cov_68.300003	43.4	29.5	13	24.6	0	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_121525	NODE_30520_length_61_cov_25.245901	15.1	25.7	0	0	0	0	4.9	5.7	cell wall	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_121525	NODE_30520_length_61_cov_25.245901	15.1	25.7	0	0	0	0	4.9	5.7	protein.degradation.subtilases	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_986	NODE_30521_length_1960_cov_44.731632	27.8	48	28.7	76.9	0	1.4	0	0	protein.degradation.subtilases	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_986	NODE_30521_length_1960_cov_44.731632	27.8	48	28.7	76.9	0	1.4	0	0	cell wall	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_112163	NODE_30530_length_112_cov_38.660713	15.3	61.1	28.2	29.4	2	0	0	1.1	not assigned.unknown	not assigned.unknown
MSGI1_121522	NODE_30536_length_61_cov_31.016394	17.5	24.1	0	0	0	0	5.1	5.6	not assigned.unknown	not assigned.unknown
MSGI1_80658	NODE_30542_length_161_cov_8.708075	4.6	3	23.7	4.7	0	-2.3	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_2054	NODE_30546_length_1531_cov_44.714565	48.3	1.7	15	1.3	-4.8	-3.5	1.7	0	TCA / org. transformation.other organic acid transformaitons.malic	"ATNADP-ME3 (NADP-MALIC ENZYME 3); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor The malic enzyme (EC 1.1.1.40) encoded by the ATNADP-ME3 is presumably cytosolic"
MSGI1_28304	NODE_3055_length_387_cov_187.131790	36.4	118.1	0	0	1.7	0	6.2	7.9	not assigned.unknown	not assigned.unknown
MSGI1_79451	NODE_30550_length_163_cov_19.012270	3.9	2.2	16.7	0.7	0	-4.6	0	0	misc.cytochrome P450	"cytochrome P450, putative  similar to CYP81D2 (cytochrome P450, family 81, subfamily D, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37360.1); similar to CYP81D3 (cytochrome P450, family 81, subfamily D, polypeptide 3), oxygen binding"
MSGI1_115194	NODE_3056_length_86_cov_69.360466	25.3	2.4	4.3	1	-3.4	0	2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_57851	NODE_30561_length_216_cov_15.365741	16.1	18.6	1.6	0.9	0	0	3.3	4.4	not assigned.unknown	not assigned.unknown
MSGI1_52674	NODE_3057_length_235_cov_53.523403	55.2	3.3	7.9	2.7	-4.1	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_93207	NODE_30572_length_142_cov_13.373240	13	0.6	2.4	3	-4.4	0	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	ELI3-1 (ELICITOR-ACTIVATED GENE 3); oxidoreductase/ zinc ion binding Encodes a putative mannitol dehydrogenase. Identical to Probable mannitol dehydrogenase 1 (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase 1) (ELI3-1) [Arabidopsis Thaliana] (GB:Q02
MSGI1_97079	NODE_30582_length_137_cov_13.226277	10.6	33.8	57.4	19.8	1.7	-1.5	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_121519	NODE_30582_length_61_cov_25.393442	5	4.9	33.1	9.9	0	-1.7	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_37010	NODE_30591_length_313_cov_6.587860	5	10.7	31.3	9.2	0	-1.8	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_42174	NODE_30599_length_283_cov_13.289753	5.3	2.2	31.6	2.8	0	-3.5	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_104845	NODE_30602_length_128_cov_10.390625	1.4	1.6	20	7.4	0	0	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_114676	NODE_30611_length_91_cov_29.340660	19.8	28.5	0	0	0	0	5.3	5.8	not assigned.unknown	not assigned.unknown
MSGI1_68828	NODE_30625_length_185_cov_15.897297	9.1	11.3	0.4	0.6	0	0	0	4.2	not assigned.unknown	not assigned.unknown
MSGI1_86176	NODE_30626_length_152_cov_5.098684	46.2	10.3	10	6.1	-2.2	0	2.2	0	cell wall.cell wall proteins.AGPs	"FLA2 (FLA2) AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds Identical to Fasciclin-like arabinogalactan protein 2 precursor (FLA2) [Arabidopsis Thaliana] (GB:Q9SU13;GB:Q8L9T2;GB:Q9C5Q6); similar to FLA1 (F"
MSGI1_111317	NODE_30628_length_119_cov_18.210085	15.5	8.8	0	0	0	0	5	0	not assigned.unknown	not assigned.unknown
MSGI1_28601	NODE_30630_length_384_cov_12.989583	15.2	20.8	0	0	0	0	4.9	5.4	not assigned.unknown	not assigned.unknown
MSGI1_83032	NODE_30633_length_157_cov_5.955414	1.6	1.4	16.3	7.1	0	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_113820	NODE_30633_length_99_cov_91.898987	42.9	16.9	18	30.2	-1.3	0	1.3	0	protein.folding	"ATP binding / protein binding / unfolded protein binding  similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT1G26230.1); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G13470.1); similar to CPN60B (CHAPERONIN 60 BETA), ATP bi"
MSGI1_117990	NODE_30636_length_63_cov_18.698412	13.2	8.8	51.8	0.8	0	-6	-2	0	protein.degradation.cysteine protease	"cysteine-type peptidase  similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G48350.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:"
MSGI1_93205	NODE_30639_length_142_cov_5.697183	1.5	0.6	16	11.1	0	0	-3.4	-4.2	not assigned.unknown	not assigned.unknown
MSGI1_59067	NODE_30643_length_212_cov_19.985849	12.6	11.1	0	0.2	0	0	4.7	5.8	not assigned.unknown	not assigned.unknown
MSGI1_109772	NODE_30647_length_123_cov_6.918699	0	0	7.4	13.9	0	0	0	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_60315	NODE_30657_length_208_cov_22.365385	18.3	7.2	35.7	6.5	0	-2.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_112940	NODE_30661_length_106_cov_19.198112	13.7	6.7	0	0	0	0	4.8	0	cell wall	"peroxidase 50 (PER50) (P50) (PRXR2)  Identical to Peroxidase 50 precursor (EC 1.11.1.7) (Atperox P50) (PRXR2) (ATP9a) (PER50) [Arabidopsis Thaliana] (GB:Q43731;GB:Q96523;GB:Q9SBA1); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G37530.1"
MSGI1_112940	NODE_30661_length_106_cov_19.198112	13.7	6.7	0	0	0	0	4.8	0	misc.peroxidases	"peroxidase 50 (PER50) (P50) (PRXR2)  Identical to Peroxidase 50 precursor (EC 1.11.1.7) (Atperox P50) (PRXR2) (ATP9a) (PER50) [Arabidopsis Thaliana] (GB:Q43731;GB:Q96523;GB:Q9SBA1); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G37530.1"
MSGI1_17381	NODE_30673_length_550_cov_54.716362	38.1	39.9	8.1	6.9	0	0	2.2	2.5	not assigned.unknown	not assigned.unknown
MSGI1_65960	NODE_3068_length_192_cov_157.104172	4.3	2.7	105.2	2.2	0	-5.6	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_110768	NODE_30684_length_122_cov_27.508196	27.7	22.1	0.3	0.8	0	0	6.5	4.8	not assigned.unknown	not assigned.unknown
MSGI1_64121	NODE_30686_length_197_cov_11.005076	2.5	3.2	19.7	8.5	0	0	-3	0	hormone metabolism.auxin.signal transduction	"PIN1 (PIN-FORMED 1); transporter Encodes a putative auxin efflux carrier involved in shoot and root development. It is involved in the maintenance of embryonic auxin gradients.  Loss of function severely affects organ initiation, pin1 mutants are charact"
MSGI1_121509	NODE_30692_length_61_cov_18.327869	6.7	11.5	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_115659	NODE_30693_length_82_cov_12.426829	0	0	14	12.3	0	0	-4.8	-4.6	cell. vesicle transport	"coatomer protein complex, subunit beta 2 (beta prime), putative  similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT3G15980.3); similar to coatomer protein complex, subunit beta 2 (beta prime), putat"
MSGI1_95508	NODE_30697_length_139_cov_6.187050	0.2	0.1	14.6	13.3	0	0	-6.2	-7.1	protein.aa activation.lysine-tRNA ligase	"lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative  Identical to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) [Arabidopsis Thaliana] (GB:Q9ZPI1); similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Ar"
MSGI1_71963	NODE_30698_length_178_cov_11.483146	0.8	0.3	12.2	17.4	0	0	-3.9	-5.9	not assigned.unknown	not assigned.unknown
MSGI1_33410	NODE_30704_length_339_cov_18.165192	16.3	4.5	2.5	2.6	0	0	2.7	0	signalling.calcium	IQD17 (IQ-domain 17); calmodulin binding  similar to IQD18 (IQ-domain 18) [Arabidopsis thaliana] (TAIR:AT1G01110.1); similar to putative SF16 protein [Oryza sativa (japonica cultivar-group)] (GB:AAV33309.1); similar to Os08g0115200 [Oryza sativa (japonica
MSGI1_18177	NODE_30705_length_535_cov_16.842991	23.5	3.1	8.3	4.3	-2.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_52939	NODE_3071_length_234_cov_14.521367	7.5	15.8	0	0	0	0	0	5	RNA.regulation of transcription.WRKY domain transcription factor family	TTR1 (WRKY domain family protein 16); transcription factor Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. Identical to Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16)
MSGI1_52939	NODE_3071_length_234_cov_14.521367	7.5	15.8	0	0	0	0	0	5	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G18370.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thal"
MSGI1_19372	NODE_30717_length_517_cov_15.373307	23.1	8.3	5.2	5.4	0	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_27488	NODE_30722_length_396_cov_37.128788	32.4	31.1	7.3	8.4	0	0	2.2	1.9	DNA.unspecified	"DNA-binding family protein  similar to DNA-binding family protein [Arabidopsis thaliana] (TAIR:AT3G61310.1); similar to HMG-I and HMG-Y, DNA-binding [Medicago truncatula] (GB:ABE82932.1); contains InterPro domain Protein of unknown function DUF296; (Inte"
MSGI1_113819	NODE_30726_length_99_cov_49.191917	62.8	74.7	31.7	76.1	0	1.3	1	0	not assigned.unknown	not assigned.unknown
MSGI1_110766	NODE_30732_length_122_cov_5.729508	2.4	4.4	0.5	12	0	4.6	0	0	"misc.gluco-, galacto- and mannosidases"	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_110766	NODE_30732_length_122_cov_5.729508	2.4	4.4	0.5	12	0	4.6	0	0	major CHO metabolism.degradation.starch.starch cleavage	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_60314	NODE_30734_length_208_cov_5.653846	0	0	12.3	11.7	0	0	-4.6	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_113495	NODE_30737_length_102_cov_38.274509	21.1	49.4	15.3	38.3	1.2	1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_121505	NODE_30746_length_61_cov_8.557377	0	0	7.2	40.4	0	2.5	0	-6.3	not assigned.unknown	not assigned.unknown
MSGI1_91007	NODE_30750_length_145_cov_19.427586	20.6	143.4	74.5	283.7	2.8	1.9	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_112162	NODE_30751_length_112_cov_8.017858	5.9	2.2	31	10.8	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_106767	NODE_30764_length_126_cov_58.984127	54.5	120.5	22.3	52	1.1	1.2	1.3	1.2	not assigned.unknown	not assigned.unknown
MSGI1_49704	NODE_30764_length_247_cov_12.048583	0.4	0.9	33.2	2.1	0	-4	-6.4	0	not assigned.unknown	not assigned.unknown
MSGI1_20193	NODE_30769_length_500_cov_20.818001	15	15.8	0.2	0.1	0	0	6.2	7.3	not assigned.unknown	not assigned.unknown
MSGI1_121503	NODE_30770_length_61_cov_16.540983	12.1	8.5	0	0	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_121502	NODE_30770_length_61_cov_23.754099	0.2	0.2	27.1	37.1	0	0	-7.1	-7.5	not assigned.unknown	not assigned.unknown
MSGI1_74302	NODE_30772_length_173_cov_6.670520	0.2	0.9	13.1	14.6	0	0	-6	-4	not assigned.unknown	not assigned.unknown
MSGI1_61638	NODE_30777_length_204_cov_11.642157	10.9	17.2	1.8	2.3	0	0	0	2.9	not assigned.unknown	not assigned.unknown
MSGI1_105813	NODE_3078_length_127_cov_354.251984	622.4	301.4	264.7	106.1	-1	-1.3	1.2	1.5	not assigned.unknown	not assigned.unknown
MSGI1_85527	NODE_30784_length_153_cov_19.398693	0.4	1.1	38.2	1.6	0	-4.6	-6.6	0	not assigned.unknown	not assigned.unknown
MSGI1_46270	NODE_30786_length_263_cov_12.178707	14.7	7.3	0.6	0.5	0	0	4.6	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL3 (beta-galactosidase 3); beta-galactosidase putative beta-galactosidase (BGAL3 gene) similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT1G45130.1); similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase ["
MSGI1_46270	NODE_30786_length_263_cov_12.178707	14.7	7.3	0.6	0.5	0	0	4.6	0	"misc.gluco-, galacto- and mannosidases"	"BGAL3 (beta-galactosidase 3); beta-galactosidase putative beta-galactosidase (BGAL3 gene) similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT1G45130.1); similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase ["
MSGI1_43920	NODE_308_length_274_cov_499.145996	366.6	561.7	1.2	0.3	0	0	8.3	10.9	not assigned.unknown	not assigned.unknown
MSGI1_90271	NODE_3080_length_146_cov_172.664383	29.7	67.7	34	17.7	1.2	0	0	1.9	stress.abiotic.cold	C2 domain-containing protein  similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G16510.1); similar to SRC2 [Glycine max] (GB:BAA19769.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-b
MSGI1_116811	NODE_30802_length_72_cov_15.569445	10.4	31.7	1.5	0	1.6	0	0	6	protein.degradation.ubiquitin.ubiquitin	"UBQ12 (UBIQUITIN 12) Ubiquitin-like gene, believed to be a pseudogene because of amino acid substitutions in 3 of the 5 ubiquitin repeats found in the UBQ12 gene product Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875"
MSGI1_67591	NODE_30809_length_188_cov_87.324471	56.7	26.5	24.5	26.1	-1.1	0	1.2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L37a (RPL37aC)  Identical to 60S ribosomal protein L37a-2 (RPL37AC) [Arabidopsis Thaliana] (GB:Q8RXU5;GB:Q9LY39); similar to 60S ribosomal protein L37a (RPL37aB) [Arabidopsis thaliana] (TAIR:AT3G10950.1); similar to 60S ribosomal pro
MSGI1_116924	NODE_30813_length_71_cov_18.154930	0.2	0.5	2.2	22.5	0	3.4	0	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_28400	NODE_3082_length_386_cov_74.893784	50.6	2	5.3	0.9	-4.7	0	3.3	0	cell wall	"peroxidase, putative  Identical to Peroxidase 52 precursor (EC 1.11.1.7) (Atperox P52) (ATP49) (PER52) [Arabidopsis Thaliana] (GB:Q9FLC0); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to Peroxidase P7 (TP7) (GB:P0043"
MSGI1_28400	NODE_3082_length_386_cov_74.893784	50.6	2	5.3	0.9	-4.7	0	3.3	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 52 precursor (EC 1.11.1.7) (Atperox P52) (ATP49) (PER52) [Arabidopsis Thaliana] (GB:Q9FLC0); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to Peroxidase P7 (TP7) (GB:P0043"
MSGI1_31728	NODE_30822_length_353_cov_10.949009	13.8	19.5	0	0	0	0	4.8	5.3	lipid metabolism.FA synthesis and FA elongation.long chain fatty acid CoA ligase	"long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)  similar to LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9), long-chain-fatty-acid-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G77590.1); similar to Os05g031"
MSGI1_44100	NODE_30824_length_273_cov_4.923077	4	7.8	29.9	7.9	0	-1.9	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_87536	NODE_30826_length_150_cov_18.033333	11.7	13.6	0	0	0	0	4.5	4.8	not assigned.unknown	not assigned.unknown
MSGI1_77813	NODE_30827_length_166_cov_19.921686	18.8	65.4	31.1	28.3	1.8	0	0	1.2	"RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family"	LOB domain protein 40 / lateral organ boundaries domain protein 40 (LBD40)  Identical to LOB domain-containing protein 40 (LBD40) [Arabidopsis Thaliana] (GB:Q9ZW96;GB:Q53XE6); similar to LOB domain protein 41 / lateral organ boundaries domain protein 41
MSGI1_31045	NODE_30828_length_359_cov_10.389972	8.4	10.1	27.4	6.1	0	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_53460	NODE_3084_length_232_cov_24.185345	7.7	60.1	85.7	51.7	3	0	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_52937	NODE_30841_length_234_cov_49.085468	52.1	47.9	3	2.4	0	0	4.1	4.3	RNA.transcription	"DNA-directed RNA polymerases I, II, and III 7 kDa subunit, putative  similar to DNA-directed RNA polymerases I, II, and III 7 kDa subunit, putative [Arabidopsis thaliana] (TAIR:AT1G53690.1); similar to polymerase (RNA) II (DNA directed) polypeptide K iso"
MSGI1_114988	NODE_30847_length_88_cov_30.886364	23.9	34.6	2	1	0	0	3.6	5.1	not assigned.unknown	not assigned.unknown
MSGI1_94007	NODE_3085_length_141_cov_19.056738	3.6	2.2	37.8	2	0	-4.2	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_121495	NODE_30852_length_61_cov_34.672131	21.3	14.7	0	0	0	0	5.4	4.9	not assigned.unknown	not assigned.unknown
MSGI1_71961	NODE_30853_length_178_cov_8.443820	1.3	0.6	6.3	11.8	0	0	0	-4.3	not assigned.unknown	not assigned.unknown
MSGI1_64851	NODE_30860_length_195_cov_4.851282	1.9	5.4	17.1	5.7	0	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_99514	NODE_30864_length_134_cov_12.813433	12.3	37.3	34.1	36.3	1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_55043	NODE_30878_length_226_cov_13.823009	16.6	8.9	1.4	0.3	0	0	3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_25849	NODE_30891_length_416_cov_6.449519	10	9.5	35.4	11.7	0	-1.6	-1.8	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_25849	NODE_30891_length_416_cov_6.449519	10	9.5	35.4	11.7	0	-1.6	-1.8	0	development.unspecified	"nodulin, putative  similar to nodulin, putative [Arabidopsis thaliana] (TAIR:AT3G43630.1); similar to H0701F11.2 [Oryza sativa (indica cultivar-group)] (GB:CAJ86136.1); contains InterPro domain Protein of unknown function DUF125, transmembrane; (InterPro"
MSGI1_97073	NODE_30896_length_137_cov_114.270073	69.2	22.9	77.5	49.9	-1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_121491	NODE_30896_length_61_cov_49.655739	21.3	10.1	79.8	35.8	0	-1.2	-1.9	-1.8	protein.degradation.cysteine protease	"XCP2 (XYLEM CYSTEINE PEPTIDASE 2); cysteine-type peptidase/ peptidase  Identical to Xylem cysteine proteinase 2 precursor (EC 3.4.22.-) (AtXCP2) (XCP2) [Arabidopsis Thaliana] (GB:Q9LM66;GB:Q9SYQ2); similar to XCP1 (XYLEM CYSTEINE PEPTIDASE 1), cysteine-t"
MSGI1_71960	NODE_30899_length_178_cov_7.320225	0	0	15.9	8.2	0	0	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_121490	NODE_30905_length_61_cov_18.540983	9.1	11.7	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_121489	NODE_30907_length_61_cov_45.459015	0	0	40.3	54.8	0	0	-6.3	-6.8	not assigned.unknown	not assigned.unknown
MSGI1_39094	NODE_30911_length_300_cov_45.160000	5.6	46	6.3	3.7	3	0	0	3.6	not assigned.unknown	not assigned.unknown
MSGI1_43918	NODE_30915_length_274_cov_16.332117	14	22.3	0.3	0	0	0	5.5	5.5	not assigned.unknown	not assigned.unknown
MSGI1_71959	NODE_30919_length_178_cov_10.910112	0	0	9.2	13.7	0	0	0	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_55865	NODE_30920_length_223_cov_32.502243	12.5	36	3.6	1.4	1.5	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_52936	NODE_30940_length_234_cov_42.388889	24.9	26.4	0	0	0	0	5.6	5.7	not assigned.unknown	not assigned.unknown
MSGI1_71467	NODE_30944_length_179_cov_76.251396	24.7	21.3	5.1	9.8	0	0	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_106762	NODE_30952_length_126_cov_11.714286	5.5	11	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_60595	NODE_30952_length_207_cov_6.797101	53.4	77.4	55.2	8.4	0	-2.7	0	3.2	not assigned.unknown	not assigned.unknown
MSGI1_71075	NODE_30955_length_180_cov_5.822222	0	0	4.2	14	0	0	0	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_54511	NODE_30960_length_228_cov_8.078947	11.9	5.5	71.6	5.4	0	-3.7	-2.6	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_106761	NODE_30981_length_126_cov_6.182539	0.7	2.7	14.3	3.8	0	0	-4.4	0	not assigned.unknown	not assigned.unknown
MSGI1_5846	NODE_3099_length_983_cov_13.492371	18.8	16	2.1	2.1	0	0	3.2	2.9	"misc.gluco-, galacto- and mannosidases"	glycosyl hydrolase family 38 protein  similar to glycosyl hydrolase family 38 protein [Arabidopsis thaliana] (TAIR:AT3G26720.1); similar to glycosyl hydrolase family 38 protein [Arabidopsis thaliana] (TAIR:AT5G66150.1); similar to Glycosyl hydrolases fam
MSGI1_99513	NODE_30993_length_134_cov_6.440299	1.3	2.8	27.1	1.5	0	-4.2	-4.4	0	transport.ABC transporters and multidrug resistance systems	ABC transporter family protein  Identical to White-brown complex homolog protein 26 (WBC26) [Arabidopsis Thaliana] (GB:Q84TH5;GB:Q949Y4;GB:Q9C8W6); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G31770.1); similar to ABC transp
MSGI1_45369	NODE_30993_length_267_cov_8.936330	12.9	17.7	0	0	0	0	4.7	5.1	not assigned.unknown	not assigned.unknown
MSGI1_107759	NODE_31001_length_125_cov_11.416000	3.8	9.2	23.5	4.8	0	-2.3	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_71465	NODE_31007_length_179_cov_16.547485	22.7	11.6	0.4	2.1	0	0	5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_50206	NODE_31013_length_245_cov_8.640817	15.9	28.5	0.2	0	0	0	6.3	5.8	not assigned.unknown	not assigned.unknown
MSGI1_116311	NODE_31014_length_76_cov_67.184212	36.9	28	12.8	45.5	0	1.8	1.5	0	amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoglycerate dehydrogenase	"D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative  similar to PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE), phosphoglycerate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G17745.1); similar to EDA9 (embryo sac development arrest 9), NAD binding"
MSGI1_74301	NODE_31019_length_173_cov_11.236994	26.1	9.5	28.1	7.1	0	-2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_59983	NODE_31029_length_209_cov_64.564590	10.6	33.2	15.3	19.7	1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_47707	NODE_31034_length_256_cov_6.894531	2.7	4.8	17.1	8.8	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_20244	NODE_31036_length_499_cov_20.120241	17.1	33.1	43.5	49.9	0	0	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_121482	NODE_31042_length_61_cov_46.278690	29.3	25.5	4	5.8	0	0	2.9	2.1	not assigned.unknown	not assigned.unknown
MSGI1_55041	NODE_31043_length_226_cov_8.566372	26	4	2.5	0.3	-2.7	0	3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_56131	NODE_31059_length_222_cov_20.040541	9.5	51	22.3	5.1	2.4	-2.1	0	3.3	not assigned.unknown	not assigned.unknown
MSGI1_57847	NODE_3106_length_216_cov_87.976852	8	42.6	51.5	97.3	2.4	0	-2.7	-1.2	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN1 (DARK INDUCIBLE 6) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumul"
MSGI1_111465	NODE_31062_length_118_cov_25.076271	20	5.4	121.9	20.3	0	-2.6	-2.6	0	misc.peroxidases	peroxidase encodes peroxidase involved in the lignification of tracheary elements (TE) in roots Identical to Peroxidase 66 precursor (EC 1.11.1.7) (Atperox P66) (ATP27a) (PER66) [Arabidopsis Thaliana] (GB:Q9LT91;GB:P93727); similar to peroxidase 64 (PER6
MSGI1_97892	NODE_31066_length_136_cov_57.044117	45.9	15.3	22.4	31.6	-1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_96324	NODE_31076_length_138_cov_11.413043	3.7	6.7	78.1	1.3	0	-5.9	-4.4	0	not assigned.unknown	not assigned.unknown
MSGI1_103040	NODE_31079_length_130_cov_14.492308	16.2	25.4	0	0	0	0	5	5.7	not assigned.unknown	not assigned.unknown
MSGI1_111566	NODE_31083_length_117_cov_107.897438	10.4	46	63.6	107.2	2.1	0	-2.6	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_96323	NODE_31087_length_138_cov_9.956522	10.4	14.7	0	0	0	0	0	4.9	not assigned.unknown	not assigned.unknown
MSGI1_1609	NODE_31087_length_1671_cov_11.909635	0.4	14	1.8	7.9	5.1	0	0	0	RNA.processing.ribonucleases	RNase H domain-containing protein  similar to reverse transcriptase-related [Arabidopsis thaliana] (TAIR:AT4G12275.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contain
MSGI1_112161	NODE_3109_length_112_cov_44.723213	40.5	34.7	13.5	35.5	0	1.4	1.6	0	cell.cycle.peptidylprolyl isomerase	"ROF1 (ROTAMASE FKBP 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase Encodes a a high molecular weight member of the FK506 binding protein (FKBP) family.  It has three FKBP12-like domains, tetratricopeptide repeats, and a puta"
MSGI1_72455	NODE_31090_length_177_cov_15.152542	3.9	13.9	4.7	0.6	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_81221	NODE_311_length_160_cov_35.337502	3.2	15.9	11.9	42.9	0	1.9	0	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_77810	NODE_3110_length_166_cov_5.650602	0.8	1.4	20.8	14.6	0	0	-4.7	-3.4	not assigned.unknown	not assigned.unknown
MSGI1_49023	NODE_31100_length_250_cov_6.688000	3.2	1.5	21.8	2.4	0	-3.2	-2.8	0	stress.biotic	glycosyl hydrolase family 81 protein  similar to glycosyl hydrolase family 81 protein [Arabidopsis thaliana] (TAIR:AT1G18310.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96863.1); similar to beta-glucan-binding protein 4 [Medicago truncatu
MSGI1_111807	NODE_31101_length_115_cov_31.208696	8.7	28	3.6	7.7	0	0	0	1.9	"misc.oxidases - copper, flavone etc."	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_81781	NODE_31110_length_159_cov_27.943396	7.1	6.3	58.4	6.2	0	-3.2	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_76229	NODE_31118_length_169_cov_6.591716	0.3	2	14	6.3	0	0	-5.5	0	not assigned.unknown	not assigned.unknown
MSGI1_103039	NODE_31119_length_130_cov_14.407692	4	12.5	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_97891	NODE_31130_length_136_cov_7.161765	13.6	0	9.6	0	-4.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_97069	NODE_31132_length_137_cov_6.868613	0	0	7.1	22.5	0	0	0	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_19963	NODE_31136_length_505_cov_12.750495	16	2.1	0.9	1	-2.9	0	4.2	0	misc.invertase/pectin methylesterase inhibitor family protein	invertase/pectin methylesterase inhibitor family protein  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT4G25260.1); similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thali
MSGI1_19963	NODE_31136_length_505_cov_12.750495	16	2.1	0.9	1	-2.9	0	4.2	0	cell wall	invertase/pectin methylesterase inhibitor family protein  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT4G25260.1); similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thali
MSGI1_94004	NODE_31148_length_141_cov_5.730496	0	0.2	3.1	13.4	0	0	0	-6.1	not assigned.unknown	not assigned.unknown
MSGI1_99508	NODE_31159_length_134_cov_12.850746	0	0	33.1	14.9	0	0	-6	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_94003	NODE_31159_length_141_cov_30.014185	0.1	0.4	60.9	0.5	0	-6.9	-9.3	0	not assigned.unknown	not assigned.unknown
MSGI1_46269	NODE_31164_length_263_cov_5.555133	1.1	5.3	23.8	1.5	0	-4	-4.4	0	not assigned.unknown	not assigned.unknown
MSGI1_104836	NODE_31165_length_128_cov_5.250000	5.8	2	14.1	1.1	0	-3.7	0	0	hormone metabolism.auxin.signal transduction	auxin efflux carrier family protein  similar to auxin:hydrogen symporter [Arabidopsis thaliana] (TAIR:AT2G17500.4); similar to Auxin Efflux Carrier [Medicago truncatula] (GB:ABE78073.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776)
MSGI1_104836	NODE_31165_length_128_cov_5.250000	5.8	2	14.1	1.1	0	-3.7	0	0	transport.misc	auxin efflux carrier family protein  similar to auxin:hydrogen symporter [Arabidopsis thaliana] (TAIR:AT2G17500.4); similar to Auxin Efflux Carrier [Medicago truncatula] (GB:ABE78073.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776)
MSGI1_62309	NODE_31167_length_202_cov_10.836634	2.5	0.2	10.5	16.6	0	0	0	-6.4	nucleotide metabolism.degradation	inosine-uridine preferring nucleoside hydrolase family protein  similar to inosine-uridine preferring nucleoside hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G18890.1); similar to putative inosine-uridine preferring nucleoside hydrolase [Oryza
MSGI1_46482	NODE_31171_length_262_cov_10.610687	9.3	7.8	72.8	7.7	0	-3.2	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_46020	NODE_31187_length_264_cov_55.200756	42.8	31.4	6.9	10.2	0	0	2.6	1.6	not assigned.unknown	not assigned.unknown
MSGI1_112039	NODE_31199_length_113_cov_79.654869	76.9	84.2	24.7	33.3	0	0	1.6	1.3	stress.abiotic.unspecified	universal stress protein (USP) family protein  similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT5G54430.1); similar to Os07g0551400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059943.1); similar to CHP-rich zi
MSGI1_41977	NODE_31210_length_284_cov_29.665493	35.2	30.9	1.5	1.6	0	0	4.6	4.3	not assigned.unknown	not assigned.unknown
MSGI1_84918	NODE_31217_length_154_cov_13.584415	10.6	16.4	48.8	14	0	-1.8	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_38866	NODE_31224_length_301_cov_16.700996	20.8	1.6	4.9	6.1	-3.7	0	0	0	cell wall	"peroxidase, putative  Identical to Peroxidase 54 precursor (EC 1.11.1.7) (Atperox P54) (ATP29a) (PER54) [Arabidopsis Thaliana] (GB:Q9FG34;GB:P93729); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G06720.1); similar to Peroxidase A2 (GB:"
MSGI1_38866	NODE_31224_length_301_cov_16.700996	20.8	1.6	4.9	6.1	-3.7	0	0	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 54 precursor (EC 1.11.1.7) (Atperox P54) (ATP29a) (PER54) [Arabidopsis Thaliana] (GB:Q9FG34;GB:P93729); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G06720.1); similar to Peroxidase A2 (GB:"
MSGI1_74299	NODE_31234_length_173_cov_48.046242	25.3	27	8.5	35.2	0	2.1	0	0	cell wall.cellulose synthesis.cellulose synthase	"ATCSLG2 (Cellulose synthase-like G2); transferase/ transferase, transferring glycosyl groups encodes a protein similar to cellulose synthase similar to ATCSLG3 (Cellulose synthase-like G3), transferase/ transferase, transferring glycosyl groups [Arabidop"
MSGI1_69267	NODE_31239_length_184_cov_4.994565	0	0	4.2	13.1	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_27244	NODE_31256_length_399_cov_13.408522	18.2	0.5	2.6	0	-5.2	0	2.8	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY70 (WRKY DNA-binding protein 70); transcription factor member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of  JA-signaling is partly
MSGI1_51650	NODE_31288_length_239_cov_24.117155	30.1	0.7	0	0	-5.4	0	5.9	0	not assigned.unknown	not assigned.unknown
MSGI1_65208	NODE_313_length_194_cov_156.175262	9.1	80.4	26.6	81.3	3.1	1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_36153	NODE_31306_length_319_cov_11.862069	6.4	11.4	26.1	30.8	0	0	-2	0	protein.degradation.ubiquitin.E3.RING	zinc finger (C3HC4-type RING finger) family protein  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29270.2); similar to Os03g0211100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049345.1); similar to Os03g0427100 [Oryza sativa (japoni
MSGI1_121465	NODE_31316_length_61_cov_58.737705	38	11	12	29.2	-1.8	0	1.7	0	protein.synthesis.elongation	"EMB2726 (EMBRYO DEFECTIVE 2726); translation elongation factor  similar to translation elongation factor Ts (EF-Ts), putative [Arabidopsis thaliana] (TAIR:AT4G11120.1); similar to Os12g0541500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066956.1);"
MSGI1_121463	NODE_31329_length_61_cov_29.000000	16	21.8	0.4	0	0	0	5.3	5.4	not assigned.unknown	not assigned.unknown
MSGI1_20337	NODE_31336_length_497_cov_77.064384	55	41.9	13.3	24.4	0	0	2	0	cell wall.pectin*esterases.acetyl esterase	"pectinacetylesterase, putative  similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT5G26670.1); similar to Pectinacetylesterase [Medicago truncatula] (GB:ABD33181.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963"
MSGI1_111316	NODE_31337_length_119_cov_14.949580	12.8	7.1	0	0	0	0	4.7	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL3 (beta-galactosidase 3); beta-galactosidase putative beta-galactosidase (BGAL3 gene) similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT1G45130.1); similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase ["
MSGI1_111316	NODE_31337_length_119_cov_14.949580	12.8	7.1	0	0	0	0	4.7	0	"misc.gluco-, galacto- and mannosidases"	"BGAL3 (beta-galactosidase 3); beta-galactosidase putative beta-galactosidase (BGAL3 gene) similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT1G45130.1); similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase ["
MSGI1_112939	NODE_31355_length_106_cov_26.622641	24.2	20.9	0.6	0	0	0	5.3	5.4	protein.postranslational modification	ARF3/ARL1/ATARL1 (ADP-RIBOSYLATION FACTOR 3); protein binding GTPase required for Golgi targeting of GRIP domain  proteins. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner Identical to ADP-ribosylation factor 3 (ARF3) [Arabid
MSGI1_109767	NODE_31357_length_123_cov_7.113821	4.2	6.1	30.3	10.3	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_34401	NODE_31359_length_332_cov_13.659638	5.6	11.9	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_90265	NODE_31360_length_146_cov_6.739726	2.3	1.6	16.7	1.9	0	-3.1	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_35726	NODE_3137_length_322_cov_68.378883	39.8	36.9	90.3	8	0	-3.5	-1.2	2.2	not assigned.unknown	not assigned.unknown
MSGI1_80055	NODE_31371_length_162_cov_4.475308	0.3	0.6	16.8	11	0	0	-5.8	-4.2	not assigned.unknown	not assigned.unknown
MSGI1_56128	NODE_31388_length_222_cov_3.752252	82.6	0.5	9.3	1.6	-7.4	0	3.2	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to ATLTL1/LTL1 (LI-TOLERANT LIPASE 1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT3G04290.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipo"
MSGI1_56128	NODE_31388_length_222_cov_3.752252	82.6	0.5	9.3	1.6	-7.4	0	3.2	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_20725	NODE_31393_length_489_cov_13.071574	17.6	0.6	3.6	6.7	-4.9	0	0	0	misc.cytochrome P450	"CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15); oxygen binding putative cytochrome P450 similar to CYP72A14 (cytochrome P450, family 72, subfamily A, polypeptide 14), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14680.1); similar t"
MSGI1_111564	NODE_31401_length_117_cov_39.880341	15.3	31.9	1.9	2.5	0	0	3	3.7	redox.thioredoxin	"ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1); thiol-disulfide exchange intermediate Encodes a single cysteine active site thioredoxin-related protein, similar to thioredoxin H-type from Arabidopsis thaliana SP:P29448, Nicotiana tabacum"
MSGI1_15630	NODE_3141_length_587_cov_55.350937	33.2	86.2	40	58.4	1.4	0	0	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	KNAT1 (BREVIPEDICELLUS 1); transcription factor A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem
MSGI1_39812	NODE_31421_length_296_cov_9.685811	9.2	10.4	21.1	32	0	0	0	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_65206	NODE_31425_length_194_cov_16.922680	0.9	23.1	7.4	18.3	4.7	0	0	0	misc.cytochrome P450	"CYP76C4 (cytochrome P450, family 76, subfamily C, polypeptide 4); oxygen binding member of CYP76C Identical to Cytochrome P450 76C4 (EC 1.14.-.-) (CYP76C4) [Arabidopsis Thaliana] (GB:O64635); similar to CYP76C2 (cytochrome P450, family 76, subfamily C, p"
MSGI1_121458	NODE_3143_length_61_cov_154.950821	53.2	26.8	7.2	17.3	0	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_111315	NODE_3144_length_119_cov_20.983192	18.4	11	0.5	0.8	0	0	5.2	0	RNA.regulation of transcription.unclassified	LOL1 (LSD ONE LIKE 1) Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death. similar to LSD1 (LESION SIMULATING DISEASE) [Arabidopsis thaliana] (TAIR:AT4G20380.7); similar to LSD-One-Like 1 [Brassica
MSGI1_30411	NODE_3144_length_365_cov_39.043835	45	27.8	9.7	21.5	0	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_96319	NODE_31444_length_138_cov_6.630435	3.5	9.1	19.3	4.3	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_84917	NODE_31446_length_154_cov_5.701299	0	0	11.8	12.6	0	0	-4.6	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_25435	NODE_31449_length_421_cov_12.465558	6.5	11.9	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_29137	NODE_3146_length_378_cov_40.595238	54.7	45.5	15.9	28.2	0	0	1.8	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S3 (RPS3C)  Identical to 40S ribosomal protein S3-3 (RPS3C) [Arabidopsis Thaliana] (GB:Q9FJA6); similar to 40S ribosomal protein S3 (RPS3A) [Arabidopsis thaliana] (TAIR:AT2G31610.1); similar to ribosomal protein S3 [Medicago truncat
MSGI1_32186	NODE_31464_length_349_cov_9.885386	3.4	4.8	19.6	25.3	0	0	-2.5	-2.4	hormone metabolism.ethylene.induced-regulated-responsive-activated	universal stress protein (USP) family protein  similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT3G58450.1); similar to putative stress-related protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87267.1); contain
MSGI1_32186	NODE_31464_length_349_cov_9.885386	3.4	4.8	19.6	25.3	0	0	-2.5	-2.4	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_121455	NODE_3147_length_61_cov_38.311474	0	0	91.8	0.4	0	-7.8	-7.5	0	not assigned.unknown	not assigned.unknown
MSGI1_111806	NODE_31472_length_115_cov_29.147825	14.3	23.1	0.6	0.3	0	0	4.6	6.3	protein.degradation.ubiquitin.E3.RING	zinc finger protein-related  similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G05890.1); similar to IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) [Arabidopsis thaliana] (TAIR:AT2G31510.1); similar to OJ990528_30.1
MSGI1_6379	NODE_3149_length_948_cov_75.144516	34.9	40.6	1.1	1.6	0	0	5	4.7	not assigned.unknown	not assigned.unknown
MSGI1_43916	NODE_31495_length_274_cov_20.270073	114.4	7.6	41.7	5.1	-3.9	-3	1.5	0	RNA.regulation of transcription.Aux/IAA family	IAA16 (indoleacetic acid-induced protein 16); transcription factor early auxin-induced (IAA16) Identical to Auxin-responsive protein IAA16 (Indoleacetic acid-induced protein 16) (IAA16) [Arabidopsis Thaliana] (GB:O24407); similar to IAA7 (AUXIN RESISTANT
MSGI1_43916	NODE_31495_length_274_cov_20.270073	114.4	7.6	41.7	5.1	-3.9	-3	1.5	0	hormone metabolism.auxin.induced-regulated-responsive-activated	IAA16 (indoleacetic acid-induced protein 16); transcription factor early auxin-induced (IAA16) Identical to Auxin-responsive protein IAA16 (Indoleacetic acid-induced protein 16) (IAA16) [Arabidopsis Thaliana] (GB:O24407); similar to IAA7 (AUXIN RESISTANT
MSGI1_69265	NODE_31503_length_184_cov_6.804348	1.7	2.9	16.6	4.9	0	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_69712	NODE_3151_length_183_cov_6.120219	0.3	0.3	11.9	2.7	0	0	-5.3	0	not assigned.unknown	not assigned.unknown
MSGI1_121452	NODE_31520_length_61_cov_20.327869	0	12.4	1.6	52.3	4.6	5	0	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_83630	NODE_31540_length_156_cov_11.025641	0.2	14.1	2	0.2	6.1	0	0	6.1	not assigned.unknown	not assigned.unknown
MSGI1_121450	NODE_31554_length_61_cov_41.868851	5.2	14.2	29.9	75	0	1.3	-2.5	-2.4	TCA / org. transformation.other organic acid transformaitons.malic	"ATNADP-ME1 (NADP-MALIC ENZYME 1); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to"
MSGI1_117577	NODE_31564_length_66_cov_23.257576	10.4	15	0.4	0	0	0	0	4.9	not assigned.unknown	not assigned.unknown
MSGI1_17076	NODE_31568_length_556_cov_24.228416	43.6	33.1	6.8	7.8	0	0	2.7	2.1	not assigned.unknown	not assigned.unknown
MSGI1_44672	NODE_3159_length_270_cov_154.588882	96.8	25	29.7	59.4	-2	1	1.7	-1.2	nucleotide metabolism.phosphotransfer and pyrophosphatases.nucleoside diphosphate kinase	"nucleoside diphosphate kinase 4 (NDK4)  Identical to Nucleoside diphosphate kinase IV, chloroplast/mitochondrial precursor (EC 2.7.4.6) (NDK IV) (NDP kinase IV) (NDPK IV) (Nucleoside diphosphate kinase 4) (NDK4) [Arabidopsis Thaliana] (GB:Q8LAH8;GB:Q9T0A"
MSGI1_66743	NODE_31597_length_190_cov_6.884211	0	0.1	16.4	10.8	0	0	-5	-6.8	not assigned.unknown	not assigned.unknown
MSGI1_11513	NODE_31600_length_706_cov_19.876770	9.7	13	0.4	0.3	0	0	0	5.4	not assigned.unknown	not assigned.unknown
MSGI1_112532	NODE_31604_length_109_cov_9.990826	0	0.1	7.7	17.5	0	0	0	-7.5	transport.metabolite transporters at the mitochondrial membrane	"chloroplast ADP, ATP carrier protein, putative / ADP, ATP translocase, putative / adenine nucleotide translocase, putative  Identical to Chloroplast ADP,ATP carrier protein 2, chloroplast precursor (ADP/ATP translocase 2) (Adenine nucleotide translocase"
MSGI1_44888	NODE_31610_length_269_cov_6.156134	3.8	1.4	14.5	0.8	0	-4.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_105801	NODE_31616_length_127_cov_12.062992	2.4	5.8	22.2	1.3	0	-4.1	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_104832	NODE_31643_length_128_cov_5.875000	0	0	9	11.9	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_63726	NODE_31647_length_198_cov_5.979798	0	0	0.9	13.3	0	3.9	0	-4.7	redox.ascorbate and glutathione.glutathione	"RML1 (PHYTOALEXIN DEFICIENT 2, ROOT MERISTEMLESS 1); glutamate-cysteine ligase Encodes the enzyme glutamate-cysteine ligase catalyzing the first, and rate-limiting, step of glutathione biosynthesis.  Required for cell proliferation at the root tip. Invol"
MSGI1_102092	NODE_31652_length_131_cov_7.618320	1.2	0.2	20	1.3	0	-3.9	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_56406	NODE_31656_length_221_cov_38.678734	24	32	38	9.8	0	-2	0	1.7	not assigned.unknown	not assigned.unknown
MSGI1_106754	NODE_31678_length_126_cov_3.865079	1.2	16.7	4.9	8	3.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_11332	NODE_31689_length_712_cov_13.435393	19.4	0.7	1.4	0.1	-4.8	0	3.8	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.HCT	transferase family protein At5g48930 has been shown to encode for the hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase (HCT) both synthesizing and catabolizing the hydroxycinnamoylesters (coumaroyl/caffeoyl shikimate and quinate)
MSGI1_54506	NODE_31709_length_228_cov_12.710526	0	0	17.1	15.4	0	0	-5.1	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_48823	NODE_31710_length_251_cov_24.916334	4.9	13.5	22.8	15.1	0	0	-2.2	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	basic helix-loop-helix (bHLH) family protein  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G68810.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE94029.1); contains InterPro domain Helix-
MSGI1_121447	NODE_31712_length_61_cov_10.032787	0.6	7.2	37.5	3.7	0	-3.3	-6	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP2 (ARABIDOPSIS THALIANA SEED IMBIBITION 2); hydrolase, hydrolyzing O-glycosyl compounds  similar to ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G55740.1); similar to DI"
MSGI1_96316	NODE_31719_length_138_cov_11.253623	2.1	3.3	23.7	5.5	0	-2.1	-3.5	0	cell wall	"ATTPS11 (Arabidopsis thaliana trehalose phosphatase/synthase 11); transferase, transferring glycosyl groups Encodes an enzyme putatively involved in trehalose biosynthesis.  The protein has a trehalose synthase (TPS)-like domain that may or may not be ac"
MSGI1_96316	NODE_31719_length_138_cov_11.253623	2.1	3.3	23.7	5.5	0	-2.1	-3.5	0	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS11 (Arabidopsis thaliana trehalose phosphatase/synthase 11); transferase, transferring glycosyl groups Encodes an enzyme putatively involved in trehalose biosynthesis.  The protein has a trehalose synthase (TPS)-like domain that may or may not be ac"
MSGI1_94749	NODE_3173_length_140_cov_6.914286	2.5	2.4	11.1	19	0	0	0	-3	not assigned.unknown	not assigned.unknown
MSGI1_121446	NODE_3173_length_61_cov_62.852459	16.6	16.4	32.3	79.9	0	1.3	0	-2.3	tetrapyrrole synthesis.magnesium chelatase	GUN5 (GENOMES UNCOUPLED 5) Encodes magnesium chelatase involved in plastid-to-nucleus signal transduction. similar to Mg protoporphyrin IX chelatase [Nicotiana tabacum] (GB:AAB97152.1); similar to protoporphyrin IX:Mg Chelatase [Antirrhinum majus] (GB:CA
MSGI1_53457	NODE_31733_length_232_cov_8.887931	0	0	7.8	21.6	0	0	0	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_62307	NODE_3175_length_202_cov_82.168320	114.6	36.7	16.8	18.1	-1.6	0	2.8	0	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2A.4 (HTA12) [Arabidopsis Thaliana] (GB:Q9LZ46); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT5G59870.1); similar to Histone H2A (GB:Q9M531); contains InterPro domain Histone-fold;"
MSGI1_116923	NODE_31758_length_71_cov_13.422535	0	0	8.1	22.9	0	0	0	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_59979	NODE_31763_length_209_cov_7.535885	0	0	4.5	18.7	0	0	0	-5.2	redox.ascorbate and glutathione.glutathione	"RML1 (PHYTOALEXIN DEFICIENT 2, ROOT MERISTEMLESS 1); glutamate-cysteine ligase Encodes the enzyme glutamate-cysteine ligase catalyzing the first, and rate-limiting, step of glutathione biosynthesis.  Required for cell proliferation at the root tip. Invol"
MSGI1_77225	NODE_31771_length_167_cov_5.592814	1.6	0.9	24.1	12.6	0	0	-3.9	-3.8	lipid metabolism.FA synthesis and FA elongation.acyl coa ligase	acyl-activating enzyme 11 (AAE11)  similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT1G68270.1); similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT1G65880.1); similar t
MSGI1_117072	NODE_31786_length_70_cov_47.242859	86	36	26.4	63.7	-1.3	1.3	1.7	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"RPS1 (ribosomal protein S1); RNA binding  similar to S1 RNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G71720.1); similar to 30S ribosomal protein S1, chloroplast precursor (CS1) (GB:P29344); contains InterPro domain Nucleic acid-b"
MSGI1_22480	NODE_3179_length_463_cov_44.274300	19.1	25.2	12.2	33.4	0	1.5	0	0	nucleotide metabolism.salvage.phosphoribosyltransferases.aprt	"APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3); adenine phosphoribosyltransferase Encodes an adenine phosphoribosyltransferase (APT; EC 2.4.2.7), which is a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. APT3 has higher"
MSGI1_22480	NODE_3179_length_463_cov_44.274300	19.1	25.2	12.2	33.4	0	1.5	0	0	cell wall	"APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3); adenine phosphoribosyltransferase Encodes an adenine phosphoribosyltransferase (APT; EC 2.4.2.7), which is a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. APT3 has higher"
MSGI1_33698	NODE_31791_length_337_cov_29.148369	17.8	35.1	2.2	4.8	0	0	3	2.9	not assigned.unknown	not assigned.unknown
MSGI1_61980	NODE_31799_length_203_cov_4.261084	7.8	2.2	21.1	17.5	0	0	0	-3	cell wall.degradation.pectate lyases and polygalacturonases	"polygalacturonase  similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT1G70500.1); similar to polygalacturonase [Cucumis sativus] (GB:BAA88472.1); contains InterPro domain Virulence factor, pectin lyase fold; (Inte"
MSGI1_46019	NODE_31800_length_264_cov_21.113636	11.4	11.7	0.1	0	0	0	6.8	4.5	not assigned.unknown	not assigned.unknown
MSGI1_75234	NODE_31809_length_171_cov_7.251462	17.7	0.2	7.5	1.1	-6.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_79440	NODE_3181_length_163_cov_258.141113	270.7	97.5	8.7	11.4	-1.5	0	5	3.1	PS.calvin cyle.phosphoglycerate kinase	"phosphoglycerate kinase, putative  similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2); similar to PGK1 (PHOSPHOGLYCERATE KINASE 1), phosphoglycerate kinase [Arabidopsis thaliana] (TAIR:AT3G12780.1); similar to chloroplast"
MSGI1_121444	NODE_3181_length_61_cov_158.344269	47	76.9	104.1	183.3	0	0	-1.1	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_31977	NODE_3189_length_351_cov_17.666666	1.5	20.6	5.4	44.6	3.8	3	0	0	cell wall	"CYP82C4 (cytochrome P450, family 82, subfamily C, polypeptide 4); oxygen binding member of CYP82C similar to CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31950.1); similar to CYP82C2 (c"
MSGI1_31977	NODE_3189_length_351_cov_17.666666	1.5	20.6	5.4	44.6	3.8	3	0	0	misc.cytochrome P450	"CYP82C4 (cytochrome P450, family 82, subfamily C, polypeptide 4); oxygen binding member of CYP82C similar to CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31950.1); similar to CYP82C2 (c"
MSGI1_58108	NODE_31891_length_215_cov_9.302325	7.2	9.4	29.5	12.5	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_121442	NODE_31894_length_61_cov_86.786888	15.9	43.1	5.6	21.8	1.4	2	0	0	hormone metabolism.auxin.signal transduction	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_121442	NODE_31894_length_61_cov_86.786888	15.9	43.1	5.6	21.8	1.4	2	0	0	transport.misc	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_121442	NODE_31894_length_61_cov_86.786888	15.9	43.1	5.6	21.8	1.4	2	0	0	transport.amino acids	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_72451	NODE_31898_length_177_cov_13.401130	2.6	5.1	16.2	2.1	0	-2.9	0	0	protein.degradation.ubiquitin.E3.SCF.FBOX	F-box family protein  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G39460.1); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G39490.1); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G39450.1); similar
MSGI1_69260	NODE_319_length_184_cov_17.423914	0	0	14	47.8	0	1.8	-4.8	-6.6	not assigned.unknown	not assigned.unknown
MSGI1_121441	NODE_31908_length_61_cov_74.163933	21.1	30	0	0	0	0	5.4	5.9	not assigned.unknown	not assigned.unknown
MSGI1_45139	NODE_31912_length_268_cov_41.257462	47.1	36.6	17.1	16.1	0	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_60310	NODE_31931_length_208_cov_9.076923	3	17.5	2.2	26.1	2.5	3.6	0	0	transport.phosphate	PHO1 (PHOSPHATE 1) mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains. Identical
MSGI1_56933	NODE_31936_length_219_cov_5.675799	4.6	2.4	15.1	1.6	0	-3.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_58107	NODE_31950_length_215_cov_6.046512	60.7	3.5	28	3.4	-4.1	-3	1.1	0	DNA.repair	methyladenine glycosylase family protein  similar to methyladenine glycosylase family protein [Arabidopsis thaliana] (TAIR:AT5G44680.1); similar to Methyladenine glycosylase [Medicago truncatula] (GB:ABE81339.1); contains InterPro domain Methyladenine gly
MSGI1_59346	NODE_31957_length_211_cov_9.763033	8.7	11.5	76.9	5	0	-3.9	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_107750	NODE_31968_length_125_cov_9.768000	3.3	7.6	13.6	1.1	0	-3.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_121439	NODE_31968_length_61_cov_23.360655	11.6	8.5	0	0.8	0	0	4.5	0	protein.aa activation.lysine-tRNA ligase	"lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative  Identical to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) [Arabidopsis Thaliana] (GB:Q9ZPI1); similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Ar"
MSGI1_78859	NODE_31969_length_164_cov_14.859756	16.8	0.9	0.9	0	-4.2	0	4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_98663	NODE_31973_length_135_cov_4.348148	21.3	2.8	5.2	5.4	-2.9	0	0	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL10 (beta-galactosidase 10); beta-galactosidase member of Glycoside Hydrolase Family 35 similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative"
MSGI1_98663	NODE_31973_length_135_cov_4.348148	21.3	2.8	5.2	5.4	-2.9	0	0	0	"misc.gluco-, galacto- and mannosidases"	"BGAL10 (beta-galactosidase 10); beta-galactosidase member of Glycoside Hydrolase Family 35 similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative"
MSGI1_66322	NODE_32009_length_191_cov_16.356022	0.7	0.3	24.4	14.7	0	0	-5.1	-5.6	not assigned.unknown	not assigned.unknown
MSGI1_47947	NODE_32020_length_255_cov_19.125490	25.7	0.8	13.2	0.5	-5	-4.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_43468	NODE_32037_length_276_cov_11.018116	13.3	0.2	3	5.3	-6.1	0	0	0	misc.cytochrome P450	"CYP72A8 (cytochrome P450, family 72, subfamily A, polypeptide 8); oxygen binding putative cytochrome P450 similar to CYP72A13 (cytochrome P450, family 72, subfamily A, polypeptide 13), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14660.1); similar to"
MSGI1_104825	NODE_32045_length_128_cov_6.390625	0	0	6.7	12.7	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_95498	NODE_32046_length_139_cov_32.827339	0	0	33.5	25.8	0	0	-6.1	-5.7	not assigned.unknown	not assigned.unknown
MSGI1_121435	NODE_32057_length_61_cov_12.803279	0	0	10.8	16.9	0	0	0	-5.1	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	ATHB-15 (INCURVATA 4); DNA binding / transcription factor Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation. similar to
MSGI1_1086	NODE_321_length_1892_cov_27.866280	0.1	0.2	78.6	0.3	0	-8	-9.6	0	protein.synthesis.initiation	TIF3B1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B); nucleic acid binding / translation initiation factor encodes a member of eukaryotic translation initiation factor 3B family. Identical to Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 et
MSGI1_19825	NODE_3210_length_508_cov_47.433071	121.7	129.1	56.5	95.2	0	0	1.1	0	nucleotide metabolism.phosphotransfer and pyrophosphatases.misc	"inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative  similar to inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative [Arabidopsis thaliana] (TA"
MSGI1_59344	NODE_32102_length_211_cov_27.947866	6.2	16.4	37.6	25.4	0	0	-2.6	0	hormone metabolism.ethylene.induced-regulated-responsive-activated	"universal stress protein (USP) family protein  similar to ethylene-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G09740.1); similar to universal stress protein family [Medicago truncatula] (GB:ABE78101.1); contains InterPro domain Universa"
MSGI1_108739	NODE_32126_length_124_cov_18.266129	11.8	17.3	0	0	0	0	4.6	5.1	not assigned.unknown	not assigned.unknown
MSGI1_103026	NODE_3216_length_130_cov_89.484619	43.6	48.4	5.1	10.2	0	0	3.1	2.2	not assigned.unknown	not assigned.unknown
MSGI1_77803	NODE_32164_length_166_cov_4.801205	0	0	7.5	17.5	0	0	0	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_86870	NODE_32198_length_151_cov_5.145695	2.6	3.8	20.9	4	0	-2.4	-3	0	RNA.regulation of transcription.C2H2 zinc finger family	"PMZ; zinc ion binding Encodes a putative zinc finger protein (PMZ). Identical to Zinc finger AN1 domain-containing stress-associated protein 12 (AtSAP12) (SAP12) [Arabidopsis Thaliana] (GB:Q67YE6;GB:Q9XH76); similar to zinc finger (C2H2 type, AN1-like) f"
MSGI1_114555	NODE_3220_length_92_cov_99.413040	71.6	109.4	174.6	98	0	0	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_104823	NODE_32205_length_128_cov_8.039062	0.1	0.3	11	5.3	0	0	-6.8	0	"misc.oxidases - copper, flavone etc."	"copper amine oxidase, putative  similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G43670.1); similar to peroxisomal copper-containing amine oxidase [Glycine max] (GB:AAD40979.1); similar to Copper amine oxidase [Medicago truncatul"
MSGI1_91724	NODE_32207_length_144_cov_4.833333	0.2	0.2	9	12	0	0	0	-5.9	not assigned.unknown	not assigned.unknown
MSGI1_72885	NODE_32234_length_176_cov_8.261364	15.4	2.3	18.7	3.2	0	-2.5	0	0	secondary metabolism.wax	CUT1 (CUTICULAR 1); acyltransferase involved in wax biosynthesis; required for elongation of C24 very-long-chain fatty acids Identical to 3-ketoacyl-CoA synthase 6 (EC 2.3.1.-) (KCS-6) (Very-long-chain fatty acid condensing enzyme 6) (VLCFA condensing en
MSGI1_63410	NODE_32236_length_199_cov_5.783920	0	0.3	11.2	7.1	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_41049	NODE_3224_length_289_cov_132.311417	69.1	95.7	204	103.6	0	0	-1.6	0	protein.degradation.autophagy	"ATG8D (autophagy gene 8-related); microtubule binding in the Arabidopsis  autophagy pathway similar to ATG8C (AUTOPHAGY 8C), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G62040.1); similar to microtubule-associated protein 1 light chain 3 [Gossypi"
MSGI1_41049	NODE_3224_length_289_cov_132.311417	69.1	95.7	204	103.6	0	0	-1.6	0	cell.organisation	"ATG8D (autophagy gene 8-related); microtubule binding in the Arabidopsis  autophagy pathway similar to ATG8C (AUTOPHAGY 8C), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G62040.1); similar to microtubule-associated protein 1 light chain 3 [Gossypi"
MSGI1_11723	NODE_3224_length_699_cov_12.120172	9.4	19.4	31.7	17.9	0	0	-1.8	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	basic helix-loop-helix (bHLH) family protein  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G68810.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE94029.1); contains InterPro domain Helix-
MSGI1_76763	NODE_32259_length_168_cov_5.803571	2.1	6.4	24.9	1.8	0	-3.8	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_102085	NODE_32268_length_131_cov_9.000000	3.8	3.1	18	3.1	0	-2.5	0	0	protein.postranslational modification	"protein phosphatase 2C, putative / PP2C, putative  similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT5G66080.1); similar to protein phosphatase 2c-like protein [Thellun (GB:AAM19705.1); contains InterPr"
MSGI1_106749	NODE_32271_length_126_cov_15.761905	5.3	4.2	14.3	22	0	0	0	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_83622	NODE_32333_length_156_cov_5.474359	0	0	10.5	16.7	0	0	0	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_26625	NODE_32333_length_406_cov_62.965519	40.3	79.6	0.2	0.3	0	0	7.7	8.1	not assigned.unknown	not assigned.unknown
MSGI1_54796	NODE_32342_length_227_cov_6.303965	1	1.9	38.3	6.3	0	-2.6	-5.3	0	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	"protein phosphatase 2C, putative / PP2C, putative  similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT1G07430.1); similar to protein phosphatase 2C [Nicotiana tabacum] (GB:CAC10358.1); contains InterPro domain Pro"
MSGI1_65582	NODE_32362_length_193_cov_6.145078	24.9	8.9	6.9	10.8	0	0	1.9	0	protein.degradation.serine protease	"SCPL29 (serine carboxypeptidase-like 29); serine carboxypeptidase  similar to SCPL26 (serine carboxypeptidase-like 26), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G35780.1); similar to Serine carboxypeptidase II-2 precursor (CP-MII.2) [Conta"
MSGI1_78329	NODE_32367_length_165_cov_107.842422	109.4	102.6	51.4	101.1	0	1	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_97880	NODE_32376_length_136_cov_6.110294	0	0	13.1	3.1	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_121429	NODE_3241_length_61_cov_59.459015	39.7	36.3	9.2	28	0	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_93194	NODE_32410_length_142_cov_7.246479	0	0.1	5.3	16.3	0	0	0	-7.3	not assigned.unknown	not assigned.unknown
MSGI1_104821	NODE_32415_length_128_cov_20.445312	0	0	54.2	24.9	0	0	-6.8	-5.6	not assigned.unknown	not assigned.unknown
MSGI1_110739	NODE_32450_length_122_cov_9.327868	0	0	18	6.3	0	0	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_98658	NODE_32452_length_135_cov_6.466667	1.6	2.7	14.6	8.2	0	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_105789	NODE_32456_length_127_cov_8.858268	4.8	11.2	30.5	9.9	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_41586	NODE_32459_length_286_cov_17.388111	0	0	16.4	11	0	0	-5	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_61633	NODE_32466_length_204_cov_5.490196	0.8	0.5	15.9	5.5	0	0	-4.3	0	misc.acid and other phosphatases	"ATPAP23/PAP23 (purple acid phosphatase 23); acid phosphatase/ protein serine/threonine phosphatase  similar to ATPAP15/PAP15 (purple acid phosphatase 15), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT3G07130.1); s"
MSGI1_47945	NODE_32478_length_255_cov_14.600000	3.2	3.6	20.2	1.4	0	-3.9	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_102083	NODE_32491_length_131_cov_9.709924	30	35.8	40.2	13.1	0	-1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_33407	NODE_32491_length_339_cov_12.333333	0.1	0	33	0	0	-6	-8.4	0	not assigned.unknown	not assigned.unknown
MSGI1_75230	NODE_32502_length_171_cov_6.918128	0.8	1.2	16.1	2.2	0	-2.9	-4.3	0	not assigned.unknown	not assigned.unknown
MSGI1_66738	NODE_32503_length_190_cov_5.594737	0.5	0.8	14.5	14	0	0	-4.9	-4.1	not assigned.unknown	not assigned.unknown
MSGI1_111464	NODE_32528_length_118_cov_22.372881	20.9	10.3	4.1	6.2	0	0	2.3	0	protein.degradation.serine protease	"SCPL29 (serine carboxypeptidase-like 29); serine carboxypeptidase  similar to SCPL26 (serine carboxypeptidase-like 26), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G35780.1); similar to Serine carboxypeptidase II-2 precursor (CP-MII.2) [Conta"
MSGI1_121425	NODE_3253_length_61_cov_83.967216	52.6	28.8	4.8	18.5	0	0	3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_121424	NODE_32530_length_61_cov_19.278688	13.8	6.5	0	0	0	0	4.8	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"RPL9 (ribosomal protein L9); structural constituent of ribosome Plastid ribosomal protein CL9 Identical to 50S ribosomal protein L9, chloroplast precursor (CL9) (RPL9) [Arabidopsis Thaliana] (GB:P25864); similar to 50S ribosomal protein L9, chloroplast p"
MSGI1_58427	NODE_32539_length_214_cov_11.406542	12.9	0.4	9.4	2.2	-5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_46675	NODE_3254_length_261_cov_10.739464	8.9	17.8	2	2	0	0	0	3.2	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G44510.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thal"
MSGI1_110737	NODE_32542_length_122_cov_19.377048	12.4	16	0	0	0	0	4.6	5	not assigned.unknown	not assigned.unknown
MSGI1_83619	NODE_32544_length_156_cov_9.660256	2.7	6.4	21.7	9.7	0	0	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_78856	NODE_3255_length_164_cov_18.823172	29.6	73.6	54.3	33.2	1.3	0	0	1.1	not assigned.unknown	not assigned.unknown
MSGI1_121422	NODE_32553_length_61_cov_69.032784	47.6	0.4	6	3.7	-6.9	0	3	0	not assigned.unknown	not assigned.unknown
MSGI1_121419	NODE_32571_length_61_cov_20.081966	11.7	22.5	24.7	50.7	0	0	0	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_16977	NODE_3258_length_558_cov_55.620071	37.8	60.3	183.6	44.2	0	-2.1	-2.3	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_16977	NODE_3258_length_558_cov_55.620071	37.8	60.3	183.6	44.2	0	-2.1	-2.3	0	misc.plastocyanin-like	plastocyanin-like domain-containing protein  Identical to Early nodulin-like protein 2 precursor (Phytocyanin-like protein) [Arabidopsis Thaliana] (GB:Q9T076;GB:Q5PNT5;GB:Q8LBE5); similar to plastocyanin-like domain-containing protein [Arabidopsis thalian
MSGI1_50201	NODE_32583_length_245_cov_12.265306	14.4	51.4	40.4	81.5	1.8	1	-1.5	0	major CHO metabolism.degradation.starch.starch cleavage	"AMY2/ATAMY2 (ALPHA-AMYLASE-LIKE 2); alpha-amylase alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic doma"
MSGI1_75745	NODE_32587_length_170_cov_4.923530	3.9	1.7	5.7	14.1	0	0	0	-3.1	not assigned.unknown	not assigned.unknown
MSGI1_31976	NODE_32588_length_351_cov_22.430199	18.7	17.4	139.1	15.7	0	-3.1	-2.9	0	development.unspecified	caleosin-related family protein  similar to caleosin-related family protein [Arabidopsis thaliana] (TAIR:AT1G70680.1); similar to Os06g0254700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057304.1); similar to putative ABA-induced protein [Cynodon d
MSGI1_51080	NODE_32602_length_241_cov_27.269709	31.1	36.6	3.2	4	0	0	3.3	3.2	not assigned.unknown	not assigned.unknown
MSGI1_28600	NODE_3261_length_384_cov_21.893229	27.7	160.8	52.4	133.9	2.5	1.4	0	0	stress.abiotic.heat	17.8 kDa class I heat shock protein (HSP17.8-CI)  similar to 17.6 kDa class I heat shock protein (HSP17.6A-CI) [Arabidopsis thaliana] (TAIR:AT1G59860.1); similar to 17.5 kDa class I heat shock protein [Carica papaya] (GB:AAR25848.1); contains InterPro dom
MSGI1_74724	NODE_32612_length_172_cov_45.953487	32.9	34.6	104.8	62.5	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_11751	NODE_32613_length_698_cov_30.372494	32.4	3.7	7.3	8.5	-3.1	0	2.2	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_11751	NODE_32613_length_698_cov_30.372494	32.4	3.7	7.3	8.5	-3.1	0	2.2	0	cell wall	NIP4;2/NLM5 (NOD26-LIKE INTRINSIC PROTEIN 4;2); water channel  Identical to Probable aquaporin NIP4.2 (NOD26-like intrinsic protein 4.2) (Nodulin- 26-like major intrinsic protein 5) (AtNLM5) (Protein NLM5) (NodLikeMip5) (NIP4.2) [Arabidopsis Thaliana] (G
MSGI1_11751	NODE_32613_length_698_cov_30.372494	32.4	3.7	7.3	8.5	-3.1	0	2.2	0	transport.Major Intrinsic Proteins.unspecified	NIP4;2/NLM5 (NOD26-LIKE INTRINSIC PROTEIN 4;2); water channel  Identical to Probable aquaporin NIP4.2 (NOD26-like intrinsic protein 4.2) (Nodulin- 26-like major intrinsic protein 5) (AtNLM5) (Protein NLM5) (NodLikeMip5) (NIP4.2) [Arabidopsis Thaliana] (G
MSGI1_117215	NODE_32638_length_69_cov_12.768116	0	0	24.7	19.3	0	0	-5.6	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_115299	NODE_32657_length_85_cov_47.364704	37.8	9.5	0	0	-2	0	6.2	0	not assigned.unknown	not assigned.unknown
MSGI1_111314	NODE_32659_length_119_cov_39.663864	33.8	7.8	4.9	1.1	-2.1	0	2.8	0	misc.UDP glucosyl and glucoronyl transferases	"FRA8 (FRAGILE FIBER8); transferase Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransfer"
MSGI1_68419	NODE_32666_length_186_cov_10.897849	11.9	3.3	27.1	4.7	0	-2.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_20677	NODE_32683_length_490_cov_47.302040	36.1	44.9	23.5	91.3	0	2	0	-1	misc.cytochrome P450	"CYP71B16 (cytochrome P450, family 71, subfamily B, polypeptide 16); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B16 (EC 1.14.-.-) (CYP71B16) [Arabidopsis Thaliana] (GB:Q9LTM7); similar to CYP71B20 (cytochrome P450, family 71, s"
MSGI1_15561	NODE_32693_length_589_cov_24.127335	34.5	1.6	12.1	3.8	-4.4	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_53151	NODE_32702_length_233_cov_11.420601	3.3	9.8	14.9	31.9	0	0	0	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_40312	NODE_32705_length_293_cov_72.853241	44.6	21	17.3	26	0	0	1.4	0	protein.degradation.serine protease	"SCPL40 (serine carboxypeptidase-like 40); serine carboxypeptidase  similar to SCPL39 (serine carboxypeptidase-like 39), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G52020.1); similar to putative serine carboxypeptidase [Pisum sativum] (GB:CAC"
MSGI1_51363	NODE_32707_length_240_cov_9.504167	18.5	0	2.6	0.2	-5.2	0	2.8	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"DNA binding / transcription factor encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. similar to TNY (TINY), DNA binding / transcr"
MSGI1_105786	NODE_32721_length_127_cov_10.000000	10.3	30.5	22.7	6.4	0	0	0	2.3	not assigned.unknown	not assigned.unknown
MSGI1_49459	NODE_3273_length_248_cov_11.153226	0	0	13.6	16.7	0	0	-4.8	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_90996	NODE_32735_length_145_cov_7.248276	0	0	21.2	15.8	0	0	-5.4	-5	not assigned.unknown	not assigned.unknown
MSGI1_116711	NODE_32741_length_73_cov_44.260273	3.2	1.8	11.6	0.4	0	-4.9	0	0	protein.degradation.cysteine protease	"cysteine-type peptidase  similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G48350.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:"
MSGI1_110736	NODE_32751_length_122_cov_10.065574	0.5	0.4	6.1	16.4	0	0	0	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_41217	NODE_32756_length_288_cov_53.927082	36.1	62.7	23.8	18.5	0	0	0	1.8	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	basic helix-loop-helix (bHLH) family protein  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT5G46760.1); similar to basic helix-loop-helix (bHLH) family transcription factor [Brassica oleracea] (GB:ABD65632.1); cont
MSGI1_100351	NODE_32783_length_133_cov_59.924812	57.5	40.6	107.4	38	0	-1.5	0	0	protein.degradation	"SCPL48 (serine carboxypeptidase-like 48); serine carboxypeptidase  similar to SCPL47 (serine carboxypeptidase-like 47), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G22980.1); similar to SCPL49 (serine carboxypeptidase-like 49), serine carboxy"
MSGI1_94734	NODE_32784_length_140_cov_8.700000	11.1	0.5	7.7	1	-4.5	0	0	0	secondary metabolism.flavonoids.anthocyanins.anthocyanin 5-aromatic acyltransferase	AT5MAT; O-malonyltransferase/ transferase At3g29590 (At5MAT) encodes a malonyl-CoA:anthocyanidin 5-O-glucoside-6-O-malonyltransferase that is coordinately expressed with a epistatic 5-O-anthocyanidin glucosyltransferase (At4g14090). The enzyme is invol
MSGI1_43107	NODE_32815_length_278_cov_21.392086	13.9	10.5	213.4	12.4	0	-4.1	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_121399	NODE_32817_length_61_cov_17.163935	0	0	20.3	39.5	0	0	-5.3	-6.3	not assigned.unknown	not assigned.unknown
MSGI1_112531	NODE_32821_length_109_cov_11.715596	28	39.1	66.6	34.1	0	0	-1.3	0	protein.degradation	ATAPP1 (aminopeptidase P1) Arabidopsis aminopeptidase P1 similar to aminopeptidase [Arabidopsis thaliana] (TAIR:AT3G05350.1); similar to Xaa-Pro aminopeptidase 2 [Solanum lycopersicum] (GB:CAC59824.1); similar to metallopeptidase family M24 containing pr
MSGI1_27081	NODE_32832_length_401_cov_49.578552	45.4	0.4	11.7	1.2	-6.8	0	2	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	ELP (EXTENSIN-LIKE PROTEIN); lipid binding extensin-like protein (ELP) similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G62510.1); similar to extensin-like protein [Brassica napus] (GB:
MSGI1_28794	NODE_3285_length_382_cov_42.801048	47.9	4.7	4.4	6.1	-3.3	0	3.4	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL10 (beta-galactosidase 10); beta-galactosidase member of Glycoside Hydrolase Family 35 similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative"
MSGI1_28794	NODE_3285_length_382_cov_42.801048	47.9	4.7	4.4	6.1	-3.3	0	3.4	0	"misc.gluco-, galacto- and mannosidases"	"BGAL10 (beta-galactosidase 10); beta-galactosidase member of Glycoside Hydrolase Family 35 similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative"
MSGI1_46479	NODE_32850_length_262_cov_9.854961	6.5	9	25.7	12.5	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_121396	NODE_32852_length_61_cov_22.229507	0	0	11.2	22.2	0	0	-4.5	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_63056	NODE_3286_length_200_cov_24.635000	20.3	12.6	0.2	0	0	0	6.7	4.7	not assigned.unknown	not assigned.unknown
MSGI1_121395	NODE_32866_length_61_cov_51.229507	30.4	9.9	4	3.7	-1.6	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_47942	NODE_32869_length_255_cov_10.560784	0.6	22.7	0.8	12.5	5.2	4	0	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase, putative  similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to LOX1 (Lipoxygenase 1), lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G55020.1); similar to lipoxygenase, putati"
MSGI1_61976	NODE_32879_length_203_cov_9.226601	0.7	0.4	10.8	12	0	0	0	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_100347	NODE_32883_length_133_cov_15.240602	14.7	9	1	1	0	0	3.9	0	protein.synthesis.misc ribososomal protein	RPL34 (RIBOSOMAL PROTEIN L34); structural constituent of ribosome putative 60S ribosomal protein L34 Identical to 60S ribosomal protein L34-2 (RPL34B) [Arabidopsis Thaliana] (GB:Q9FE65); similar to 60S ribosomal protein L34 (RPL34A) [Arabidopsis thaliana]
MSGI1_101251	NODE_32889_length_132_cov_3.303030	12.9	16.3	51.1	7	0	-2.9	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_20630	NODE_32893_length_491_cov_7.000000	4.2	20.3	8.8	23.6	2.3	0	0	0	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G10290.1); similar to Protein kinase [Medicago truncatula] (GB:ABE86996.1); contains"
MSGI1_20630	NODE_32893_length_491_cov_7.000000	4.2	20.3	8.8	23.6	2.3	0	0	0	signalling.receptor kinases.leucine rich repeat II	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G10290.1); similar to Protein kinase [Medicago truncatula] (GB:ABE86996.1); contains"
MSGI1_108736	NODE_32896_length_124_cov_14.080646	0.2	0	16.5	3.5	0	0	-6.4	0	not assigned.unknown	not assigned.unknown
MSGI1_121393	NODE_32900_length_61_cov_15.491803	2.2	7.4	18.4	11.5	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_121392	NODE_32905_length_61_cov_62.737705	38.6	11.9	9.6	4.5	-1.7	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_67165	NODE_32908_length_189_cov_8.359788	2.3	3.4	16.1	3.8	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_71071	NODE_32910_length_180_cov_5.838889	0	0	7.7	14	0	0	0	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_90249	NODE_32912_length_146_cov_8.842465	19.6	3.4	25.1	8.7	-2.5	0	0	0	amino acid metabolism.synthesis.central amino acid metabolism.aspartate.aspartate aminotransferase	"ASP1 (ASPARTATE AMINOTRANSFERASE 1) ASPARTATE AMINOTRANSFERASE 1 Identical to Aspartate aminotransferase, mitochondrial precursor (EC 2.6.1.1) (Transaminase A) (ASP1) [Arabidopsis Thaliana] (GB:P46643); similar to ASP2 (ASPARTATE AMINOTRANSFERASE 2) [Ara"
MSGI1_56403	NODE_32914_length_221_cov_9.307693	0.2	0.6	17.6	22.9	0	0	-6.5	-5.3	signalling.receptor kinases.DUF 26	CRK6 (CYSTEINE-RICH RLK 6); kinase Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23160.1); similar to protein kinase fam
MSGI1_14496	NODE_32914_length_616_cov_21.243507	14.6	12.7	0.6	0.7	0	0	4.6	4.2	not assigned.unknown	not assigned.unknown
MSGI1_91717	NODE_32925_length_144_cov_4.000000	26.3	19.7	3.6	10.3	0	0	2.9	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L4/L1 (RPL4A)  Identical to 60S ribosomal protein L4-1 (L1) (RPL4A) [Arabidopsis Thaliana] (GB:Q9SF40); similar to 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] (TAIR:AT5G02870.1); similar to putative 60S ribosomal prot
MSGI1_47277	NODE_32932_length_258_cov_36.062016	43	33.3	0	0.2	0	0	6.4	7.4	not assigned.unknown	not assigned.unknown
MSGI1_84914	NODE_32934_length_154_cov_6.707792	1.1	0.4	12.7	0.9	0	-3.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_70592	NODE_32939_length_181_cov_24.524862	28.7	188.9	44.3	207	2.7	2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_50658	NODE_32945_length_243_cov_14.662552	1.8	21.3	1.8	1.2	3.6	0	0	4.1	not assigned.unknown	not assigned.unknown
MSGI1_121388	NODE_32951_length_61_cov_30.885246	17.5	15.1	0.4	0	0	0	5.5	4.9	not assigned.unknown	not assigned.unknown
MSGI1_99492	NODE_32964_length_134_cov_7.141791	1.7	4.6	16.9	1.3	0	-3.7	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_55860	NODE_32990_length_223_cov_16.385651	2.3	18.2	0	0	3	0	0	5.2	not assigned.unknown	not assigned.unknown
MSGI1_52933	NODE_330_length_234_cov_15.739316	0.5	0.1	13.8	19.4	0	0	-4.8	-7.6	not assigned.unknown	not assigned.unknown
MSGI1_116407	NODE_330_length_75_cov_20.506666	8	14.2	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_35046	NODE_33009_length_327_cov_11.492354	14.6	0.5	0	0	-4.9	0	4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_81206	NODE_33012_length_160_cov_17.268749	4.8	6	35	12.7	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_112411	NODE_3302_length_110_cov_36.109093	0	0	57.3	0.3	0	-7.6	-6.8	0	amino acid metabolism.synthesis.glutamate family.proline.delta 1-pyrroline-5-carboxylate synthetase	"P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2); catalytic/ glutamate 5-kinase/ glutamate-5-semialdehyde dehydrogenase encodes delta 1-pyrroline-5-carboxylate synthetase B. Gene expression is induced by dehydration, high salt and ABA. Identical to Del"
MSGI1_30109	NODE_33020_length_368_cov_14.597826	10.2	12.6	1.1	0.9	0	0	0	3.8	not assigned.unknown	not assigned.unknown
MSGI1_70174	NODE_3303_length_182_cov_19.571428	107	79.6	41.5	92.9	0	1.2	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_15276	NODE_3303_length_596_cov_150.120804	109.9	40.9	34	28.4	-1.4	0	1.7	0	protein.degradation.subtilases	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G20430.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabid"
MSGI1_15276	NODE_3303_length_596_cov_150.120804	109.9	40.9	34	28.4	-1.4	0	1.7	0	cell wall	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G20430.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabid"
MSGI1_49018	NODE_33031_length_250_cov_24.700001	26.8	22	92.7	10.8	0	-3.1	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_115488	NODE_33032_length_83_cov_43.590363	34.3	27.3	9.1	17.1	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_89566	NODE_33033_length_147_cov_5.353742	4.6	5.5	63.3	3.6	0	-4.1	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_12255	NODE_33036_length_681_cov_10.923642	8	11	38.3	16.6	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_106742	NODE_33041_length_126_cov_9.841269	0.1	0.2	15.3	21.2	0	0	-7.3	-6.7	not assigned.unknown	not assigned.unknown
MSGI1_116543	NODE_33042_length_74_cov_83.918922	34.1	22.4	114	19.7	0	-2.5	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_115378	NODE_33044_length_84_cov_114.178574	42.6	48	105.2	108.2	0	0	-1.3	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_73339	NODE_33045_length_175_cov_11.634286	16.3	21.1	54.4	29.8	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_9421	NODE_33045_length_785_cov_13.975796	19.3	5.6	0	0	0	0	5.3	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_121385	NODE_33046_length_61_cov_35.081966	21.1	20.5	0	0	0	0	5.4	5.4	not assigned.unknown	not assigned.unknown
MSGI1_97867	NODE_33047_length_136_cov_36.595589	39.4	78.3	117.9	75.1	0	0	-1.6	0	stress.abiotic.heat	HSP70 (heat shock protein 70); ATP binding  similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G
MSGI1_57844	NODE_33048_length_216_cov_6.208333	1.1	1.6	17.3	7.4	0	0	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_103012	NODE_33056_length_130_cov_33.461540	30.1	41.7	1.3	1.3	0	0	4.5	5	stress.biotic	"ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19); ATPase, coupled to transmembrane movement of substances / auxin efflux transporter Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates"
MSGI1_103012	NODE_33056_length_130_cov_33.461540	30.1	41.7	1.3	1.3	0	0	4.5	5	transport.ABC transporters and multidrug resistance systems	"ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19); ATPase, coupled to transmembrane movement of substances / auxin efflux transporter Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates"
MSGI1_91715	NODE_33057_length_144_cov_9.388889	0	0	7.8	12.2	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_67586	NODE_33059_length_188_cov_9.670213	9.4	30.5	24.7	14.5	1.7	0	0	0	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to IKU2 (HAIKU2), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G19700.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TA"
MSGI1_67586	NODE_33059_length_188_cov_9.670213	9.4	30.5	24.7	14.5	1.7	0	0	0	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to IKU2 (HAIKU2), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G19700.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TA"
MSGI1_121382	NODE_33062_length_61_cov_34.655739	19.2	0.4	9.6	0	-5.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_91714	NODE_33068_length_144_cov_8.312500	34	10.4	13.7	6.9	-1.7	0	0	0	"misc.oxidases - copper, flavone etc."	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_64111	NODE_3307_length_197_cov_328.401001	127.4	76.3	29.1	32	0	0	2.1	1.3	cell wall	TUA5 (tubulin alpha-5) Encodes an isoform of alpha tubulin. Closely related to adjacent gene TUA3 suggesting recent duplication. Identical to Tubulin alpha-3/alpha-5 chain (TUBA5) [Arabidopsis Thaliana] (GB:P20363); similar to TUA3 (tubulin alpha-3) [Ara
MSGI1_64111	NODE_3307_length_197_cov_328.401001	127.4	76.3	29.1	32	0	0	2.1	1.3	cell.organisation	TUA5 (tubulin alpha-5) Encodes an isoform of alpha tubulin. Closely related to adjacent gene TUA3 suggesting recent duplication. Identical to Tubulin alpha-3/alpha-5 chain (TUBA5) [Arabidopsis Thaliana] (GB:P20363); similar to TUA3 (tubulin alpha-3) [Ara
MSGI1_20113	NODE_33073_length_502_cov_108.643425	79.1	95	37.5	77.2	0	1	1.1	0	protein.degradation.ubiquitin.E2	UBC8 (UBIQUITIN CONJUGATING ENZYME 8); ubiquitin-protein ligase One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2 Identical to Ubiquitin-conjugating enzyme E2-17 kDa 8 (EC 6.3.2.19) (Ubiquitin- protein ligase 8) (Ubiquitin carri
MSGI1_121381	NODE_33077_length_61_cov_41.590164	20.1	11.5	0	0	0	0	5.3	4.5	not assigned.unknown	not assigned.unknown
MSGI1_97866	NODE_33081_length_136_cov_11.058824	1.2	0.9	18	8.7	0	0	-3.9	0	secondary metabolism.N misc.alkaloid-like	"FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to EDA28/MEE23 (embryo sac development arrest 28, maternal effect embryo arrest 23), electron carrier [Arabidopsis"
MSGI1_97866	NODE_33081_length_136_cov_11.058824	1.2	0.9	18	8.7	0	0	-3.9	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to EDA28/MEE23 (embryo sac development arrest 28, maternal effect embryo arrest 23), electron carrier [Arabidopsis"
MSGI1_111105	NODE_33103_length_121_cov_22.314049	16.1	33.3	0	0	0	0	5	6.1	not assigned.unknown	not assigned.unknown
MSGI1_60306	NODE_33114_length_208_cov_16.370192	17.5	17	3.2	5.8	0	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_116098	NODE_33120_length_78_cov_12.012820	0	0	16.1	5.1	0	0	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_11575	NODE_33134_length_704_cov_36.863636	28.3	61.5	34.2	35.6	1.1	0	0	0	cell.organisation	"ATMAP65-6; microtubule binding Binds microtubules. Induces a crisscross mesh of microtubules, not bundles.  Not involved in microtubule polymerization nor nucleation. Localizes to mitochondria. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G"
MSGI1_31043	NODE_33139_length_359_cov_29.292479	38.8	31.9	28.2	66	0	1.2	0	-1	not assigned.unknown	not assigned.unknown
MSGI1_92439	NODE_33141_length_143_cov_6.818182	0	0	12.9	14.5	0	0	-4.7	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_102076	NODE_3316_length_131_cov_35.083969	2	3.8	25	6	0	-2.1	-3.6	0	transport.amino acids	amino acid transporter family protein  similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT2G39130.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABE77592.1); contains InterPro domain Amino acid/p
MSGI1_5669	NODE_33165_length_997_cov_14.137412	10.4	53.8	26.5	13	2.4	0	0	2	RNA.regulation of transcription.GRAS transcription factor family	"SCL5; transcription factor Encodes a scarecrow-like protein (SCL5). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to Putative SCARECROW gene regu"
MSGI1_5669	NODE_33165_length_997_cov_14.137412	10.4	53.8	26.5	13	2.4	0	0	2	development.unspecified	"SCL5; transcription factor Encodes a scarecrow-like protein (SCL5). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to Putative SCARECROW gene regu"
MSGI1_97053	NODE_33169_length_137_cov_10.912409	13.4	21.2	2.7	1	0	0	0	4.4	not assigned.unknown	not assigned.unknown
MSGI1_68815	NODE_3318_length_185_cov_97.762161	58.4	44.9	2	2.6	0	0	4.9	4.1	not assigned.unknown	not assigned.unknown
MSGI1_71067	NODE_33181_length_180_cov_6.038889	0	0	14.9	9	0	0	-4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_111562	NODE_33183_length_117_cov_15.000000	13.1	12.7	0	0	0	0	4.7	4.7	stress.biotic	"ATMLO1/MLO1 (MILDEW RESISTANCE LOCUS O 1); calmodulin binding A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes e"
MSGI1_58104	NODE_33190_length_215_cov_14.627907	17.3	1.3	13.7	6.5	-3.7	0	0	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	basic helix-loop-helix (bHLH) family protein  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G68920.3); similar to bHLH transcription factor GBOF-1 [Tulipa gesneriana] (GB:AAD56411.1); contains InterPro domain Heli
MSGI1_47938	NODE_33192_length_255_cov_14.454902	17.9	5.5	0.5	2.1	0	0	5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_80639	NODE_33196_length_161_cov_6.136646	0.1	0	11.4	16.7	0	0	-6.8	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_46264	NODE_33210_length_263_cov_18.695818	12.9	20.4	0	0	0	0	4.7	5.4	not assigned.unknown	not assigned.unknown
MSGI1_13403	NODE_33216_length_647_cov_16.267387	11.1	14.2	38.8	17.2	0	0	-1.8	0	protein.degradation	protease-associated (PA) domain-containing protein  similar to peptidase [Arabidopsis thaliana] (TAIR:AT1G01650.1); similar to growth-on protein GRO10 [Euphorbia esula] (GB:AAL14629.1); similar to putative growth-on protein GRO10 [Oryza sativa (japonica
MSGI1_114985	NODE_33228_length_88_cov_16.261364	0.3	0	22.9	1.4	0	-4	-6.3	0	not assigned.unknown	not assigned.unknown
MSGI1_46863	NODE_3323_length_260_cov_7.023077	4.2	8.4	42.3	4.8	0	-3.1	-3.3	0	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G22920.1); similar to Zinc finger, RING-type; Zinc finger, CHY-type [Medicago truncatula] (GB:ABE83637.1);"
MSGI1_71066	NODE_33236_length_180_cov_5.477778	0	0	12.1	5.2	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_48588	NODE_33242_length_252_cov_6.277778	0	0	9	16.3	0	0	0	-5	not assigned.unknown	not assigned.unknown
MSGI1_50429	NODE_33253_length_244_cov_6.770492	9.5	8.9	23.5	1.3	0	-4.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_87517	NODE_33260_length_150_cov_11.006667	12.6	34.2	41	14.7	0	-1.5	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_85510	NODE_33261_length_153_cov_6.614379	0.4	0.4	15.2	0.5	0	-4.9	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_63053	NODE_33262_length_200_cov_8.785000	0.2	1.7	12.8	4.2	0	0	-6	0	transport.misc	"MATE efflux family protein  similar to ALF5 (ABERRANT LATERAL ROOT FORMATION 5), antiporter/ transporter [Arabidopsis thaliana] (TAIR:AT3G23560.1); similar to hypothetical membrane protein-1 [Marchantia polymorpha] (GB:BAB71817.1); similar to Os07g050220"
MSGI1_102074	NODE_33279_length_131_cov_11.488549	20.8	10.6	42.5	14.1	0	-1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_97864	NODE_33280_length_136_cov_13.066176	15.3	20	0.2	0	0	0	6.3	5.3	not assigned.unknown	not assigned.unknown
MSGI1_88174	NODE_33286_length_149_cov_4.785235	22.5	28.6	2.3	6.5	0	0	3.3	2.1	misc.peroxidases	"peroxidase 12 (PER12) (P12) (PRXR6)  Identical to Peroxidase 12 precursor (EC 1.11.1.7) (Atperox P12) (PRXR6) (ATP4a) (PER12) [Arabidopsis Thaliana] (GB:Q96520;GB:Q43734); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G08770.1); similar"
MSGI1_77220	NODE_33289_length_167_cov_12.664671	0	0	20.9	29.5	0	0	-5.4	-5.9	not assigned.unknown	not assigned.unknown
MSGI1_116309	NODE_33309_length_76_cov_46.868420	36.7	35.3	8.2	16.9	0	0	2.2	0	stress.abiotic.unspecified	universal stress protein (USP) family protein  similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT5G54430.1); similar to Os07g0551400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059943.1); similar to CHP-rich zi
MSGI1_32546	NODE_3331_length_346_cov_21.754335	0.9	2.1	50.7	1.4	0	-5.2	-5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_67583	NODE_33311_length_188_cov_8.925532	1.2	2.2	9.7	22.1	0	0	0	-3.3	not assigned.unknown	not assigned.unknown
MSGI1_28140	NODE_33315_length_389_cov_21.041132	11.1	18.8	32	5.3	0	-2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_121368	NODE_33323_length_61_cov_239.557373	72.4	48.9	25.1	45.7	0	0	1.5	0	signalling.calcium	"calnexin 1 (CNX1)  Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like l"
MSGI1_37150	NODE_3333_length_312_cov_6.233974	18.1	3.4	0.1	0.1	-2.4	0	7.5	0	not assigned.unknown	not assigned.unknown
MSGI1_115844	NODE_33333_length_80_cov_42.900002	21.6	38.8	16.9	47.8	0	1.5	0	0	protein.degradation.ubiquitin.E2	UBC8 (UBIQUITIN CONJUGATING ENZYME 8); ubiquitin-protein ligase One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2 Identical to Ubiquitin-conjugating enzyme E2-17 kDa 8 (EC 6.3.2.19) (Ubiquitin- protein ligase 8) (Ubiquitin carri
MSGI1_56123	NODE_33341_length_222_cov_9.220720	10.9	3.4	0.5	0.2	0	0	4.4	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_56123	NODE_33341_length_222_cov_9.220720	10.9	3.4	0.5	0.2	0	0	4.4	0	transport.sulphate	"SULTR3;2 (SULFATE TRANSPORTER 3;2); sulfate transporter  Identical to Sulfate transporter 3.2 (AST77) (SULTR3;2) [Arabidopsis Thaliana] (GB:O04289); similar to SULTR3,4 (SULTR3,4), sulfate transporter [Arabidopsis thaliana] (TAIR:AT3G15990.1); similar to"
MSGI1_42761	NODE_33353_length_280_cov_18.796429	14.6	15.6	5.7	1.8	0	0	0	3.1	not assigned.unknown	not assigned.unknown
MSGI1_105775	NODE_33369_length_127_cov_9.960629	0.5	2.2	20.4	0.8	0	-4.7	-5.4	0	not assigned.unknown	not assigned.unknown
MSGI1_60587	NODE_33372_length_207_cov_33.328503	47	19	10.9	25.6	-1.3	0	2.1	0	RNA.regulation of transcription.TCP transcription factor family	"TCP family transcription factor, putative  similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT5G08330.1); similar to unknown [Brassica rapa] (GB:ABB97033.1); contains InterPro domain TCP transcription factor; (InterPro:IP"
MSGI1_22265	NODE_33374_length_466_cov_16.545065	15.8	40.4	13	16.8	1.4	0	0	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	basic helix-loop-helix (bHLH) family protein  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT3G07340.1); similar to Os01g0915600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045188.1); similar to TA1 protein [
MSGI1_96293	NODE_33381_length_138_cov_89.224640	85.4	42.1	64	44.1	-1	0	0	0	PS.calvin cyle.seduheptulose bisphosphatase	"SBPASE (sedoheptulose-bisphosphatase); phosphoric ester hydrolase Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate u"
MSGI1_108730	NODE_33396_length_124_cov_8.201612	0	0	15.5	4.3	0	0	-5	0	amino acid metabolism.synthesis.glutamate family.arginine.aspartate racemase	aspartate-glutamate racemase family  similar to Asp/Glu racemase [Medicago truncatula] (GB:ABD28387.1); contains InterPro domain Asp/Glu racemase; (InterPro:IPR001920); contains InterPro domain Aspartate racemase; (InterPro:IPR004380)
MSGI1_111313	NODE_33405_length_119_cov_26.134455	25.7	22.1	0.8	9	0	0	5	0	TCA / org. transformation.other organic acid transformaitons.IDH	"isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative  Identical to Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial precursor (EC 1.1.1.41) (Isocitric dehydrogenase 5) (NAD(+)-specific ICDH 5) (IDH-V) (IDH5) [Arab"
MSGI1_19108	NODE_33413_length_521_cov_33.297504	39.3	78.6	47.1	65.7	1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_75739	NODE_33420_length_170_cov_16.605883	17.1	14.2	0.8	0	0	0	4.4	4.8	not assigned.unknown	not assigned.unknown
MSGI1_121359	NODE_33422_length_61_cov_27.508196	0.2	0	33.1	36.7	0	0	-7.4	-6.2	not assigned.unknown	not assigned.unknown
MSGI1_121358	NODE_33422_length_61_cov_28.459017	19.2	10.2	2	3.7	0	0	3.3	0	amino acid metabolism.synthesis.aspartate family.threonine.threonine synthase	"MTO2 (METHIONINE OVER-ACCUMULATOR); threonine synthase threonine synthase Identical to Threonine synthase, chloroplast precursor (EC 4.2.3.1) (TS) [Arabidopsis Thaliana] (GB:Q9S7B5;GB:Q39144); similar to threonine synthase, putative [Arabidopsis thaliana"
MSGI1_105774	NODE_33424_length_127_cov_19.984251	18.8	4.5	0	0	0	0	5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_95486	NODE_33425_length_139_cov_11.316546	0	0	23.8	4	0	-2.6	-5.6	0	not assigned.unknown	not assigned.unknown
MSGI1_67163	NODE_33431_length_189_cov_19.105820	7.7	42.9	21.9	9.8	2.5	0	0	2.1	RNA.processing.ribonucleases	"CCR4-NOT transcription complex protein, putative  similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT5G22250.1); similar to CCR4 associated factor 1-related protein [Capsicum annuum] (GB:ABG66307.1); contains Inter"
MSGI1_58423	NODE_33431_length_214_cov_12.345795	26.2	18.3	6.9	14.4	0	0	1.9	0	cell wall	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G34510.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); similar to Os01g0756600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044289.1); similar to Os01g0531400 [Oryza sativa (japon
MSGI1_111209	NODE_33449_length_120_cov_56.241665	45	77.2	29.1	20	0	0	0	1.9	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 54 precursor (EC 1.11.1.7) (Atperox P54) (ATP29a) (PER54) [Arabidopsis Thaliana] (GB:Q9FG34;GB:P93729); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G06720.1); similar to Peroxidase A2 (GB:"
MSGI1_93985	NODE_33453_length_141_cov_9.553191	0	0	13.5	7.9	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_121356	NODE_33456_length_61_cov_8.344262	0	0	6.4	10.7	0	0	0	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_94724	NODE_33458_length_140_cov_6.285714	0	0	11.8	9.7	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_93180	NODE_33467_length_142_cov_4.830986	0.1	0.1	10.5	11.4	0	0	0	-6.8	not assigned.unknown	not assigned.unknown
MSGI1_95484	NODE_33469_length_139_cov_8.151079	25.7	1.1	11.4	4.3	-4.5	0	0	0	lipid metabolism.FA synthesis and FA elongation.acyl coa ligase	acyl-activating enzyme 12 (AAE12)  similar to acyl-activating enzyme 11 (AAE11) [Arabidopsis thaliana] (TAIR:AT1G66120.1); similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT1G68270.1); similar to AMP-dependent s
MSGI1_38593	NODE_3347_length_303_cov_16.009901	5.4	6.4	17.8	2.1	0	-3.1	0	0	cell.organisation	ankyrin repeat family protein  similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT5G60070.1); similar to Os03g0281100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049741.1); similar to Ankyrin [Medicago truncatula] (GB:ABE80012.
MSGI1_24068	NODE_33476_length_439_cov_18.804100	0.1	24.1	0.2	1.4	7.9	0	0	4.1	RNA.regulation of transcription.MADS box transcription factor family	AP1 (APETALA1); DNA binding / transcription factor Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interact
MSGI1_24068	NODE_33476_length_439_cov_18.804100	0.1	24.1	0.2	1.4	7.9	0	0	4.1	development.unspecified	AP1 (APETALA1); DNA binding / transcription factor Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interact
MSGI1_93179	NODE_33482_length_142_cov_23.612677	10	20.9	0	0.5	0	0	0	5.4	not assigned.unknown	not assigned.unknown
MSGI1_61630	NODE_33482_length_204_cov_32.946079	19.3	21.8	42.7	12.7	0	-1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_100331	NODE_33499_length_133_cov_7.127820	0	0	11.8	15.8	0	0	-4.6	-5	not assigned.unknown	not assigned.unknown
MSGI1_86859	NODE_33499_length_151_cov_8.271523	0	0	17.4	9.9	0	0	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_42170	NODE_3350_length_283_cov_43.756184	57.3	26.6	3.1	2	-1.1	0	4.2	3.7	PS.lightreaction.photosystem II.PSII polypeptide subunits	photosystem II 5 kD protein  similar to PSBTN (photosystem II subunit T) [Arabidopsis thaliana] (TAIR:AT3G21055.1); similar to unknown [Brassica rapa] (GB:ABD91572.1)
MSGI1_63051	NODE_33500_length_200_cov_14.600000	2.2	4.4	22.3	17.1	0	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_105772	NODE_33505_length_127_cov_5.425197	0	0	11.6	12.3	0	0	-4.5	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_69702	NODE_3351_length_183_cov_12.158470	0	0	15.5	19.3	0	0	-5	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_101243	NODE_33513_length_132_cov_36.893940	39.5	35.7	12.1	12.2	0	0	1.7	1.5	not assigned.unknown	not assigned.unknown
MSGI1_69252	NODE_33517_length_184_cov_8.907609	4.3	5.8	22.6	9	0	0	-2.4	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	basic helix-loop-helix (bHLH) family protein  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT4G36060.2); similar to Os02g0433600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046730.1); similar to Os02g0433100
MSGI1_103923	NODE_3352_length_129_cov_49.031006	25.8	3.8	6.6	6.3	-2.8	0	2	0	cell wall.modification	"ATEXPA3 (ARABIDOPSIS THALIANA EXPANSIN A3) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thalian"
MSGI1_39807	NODE_33523_length_296_cov_51.243244	44.7	1.5	6.9	0.7	-4.9	0	2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_15629	NODE_33526_length_587_cov_24.059626	4.5	12	39.6	7.4	0	-2.4	-3.1	0	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G22920.1); similar to Zinc finger, RING-type; Zinc finger, CHY-type [Medicago truncatula] (GB:ABE83637.1);"
MSGI1_64109	NODE_33528_length_197_cov_26.142132	18.8	12.3	2.4	1.6	0	0	3	0	not assigned.unknown	not assigned.unknown
MSGI1_57506	NODE_33533_length_217_cov_34.483871	20.9	45.2	58.3	79.7	0	0	-1.5	0	C1-metabolism	"FDH (FORMATE DEHYDROGENASE); NAD binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor Encodes a NAD-dependent formate dehydrogenase. Identical to Formate dehydrogenase, mitochondrial precursor (EC 1.2."
MSGI1_93178	NODE_33545_length_142_cov_18.894365	19.1	6	3.8	1.5	0	0	2.3	0	misc.UDP glucosyl and glucoronyl transferases	"FRA8 (FRAGILE FIBER8); transferase Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransfer"
MSGI1_93178	NODE_33545_length_142_cov_18.894365	19.1	6	3.8	1.5	0	0	2.3	0	cell wall	"FRA8 (FRAGILE FIBER8); transferase Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransfer"
MSGI1_121344	NODE_33546_length_61_cov_11.163935	1.7	12.6	1.6	0.8	0	0	0	4	not assigned.unknown	not assigned.unknown
MSGI1_75221	NODE_33557_length_171_cov_6.052631	0	0	13.8	0.6	0	-4.5	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_109744	NODE_33563_length_123_cov_14.097561	0.9	13	0	0	3.9	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_28302	NODE_33563_length_387_cov_20.521963	27	0.2	10.5	0.3	-7.1	-5.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_77216	NODE_33572_length_167_cov_29.754492	24.1	53.7	30.1	10.4	1.2	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_121342	NODE_33576_length_61_cov_38.344261	17	14.4	0	0	0	0	5.1	4.8	not assigned.unknown	not assigned.unknown
MSGI1_90985	NODE_3358_length_145_cov_112.027588	108.3	2.6	0	0	-5.4	0	7.8	0	cell wall.degradation.pectate lyases and polygalacturonases	"PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding polygalacturonase inhibiting protein 1 (PGIP1) mRNA, Identical to Polygalacturonase inhibitor 1 precursor (Polygalacturonase-inhibiting protein) (PGIP-1) (PGIP1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_113817	NODE_33581_length_99_cov_23.929293	7.6	10.3	0.3	0.3	0	0	0	5.1	not assigned.unknown	not assigned.unknown
MSGI1_121340	NODE_33586_length_61_cov_74.032784	37.7	8.8	11.6	30.5	-2.1	0	1.7	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_80638	NODE_33588_length_161_cov_7.099379	0.6	1.1	14.7	4.5	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_99485	NODE_33596_length_134_cov_19.246269	1.5	1.2	17.7	4.6	0	0	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_63405	NODE_33607_length_199_cov_16.376884	17.6	0.2	0	0	-6.5	0	5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_121337	NODE_33610_length_61_cov_88.754097	52.8	48.9	0.4	0	0	0	7	6.6	protein.postranslational modification	"calmodulin, putative  similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT1G62820.1); similar to putative serine/threonine kinase [Vitis vinifera] (GB:AAO49473.1); similar to EF hand family protein [Solanum demissum] (GB:AAT40490.1); contains"
MSGI1_74720	NODE_33614_length_172_cov_27.523256	23.8	9.8	1.9	8.6	0	0	3.6	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L4/L1 (RPL4A)  Identical to 60S ribosomal protein L4-1 (L1) (RPL4A) [Arabidopsis Thaliana] (GB:Q9SF40); similar to 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] (TAIR:AT5G02870.1); similar to putative 60S ribosomal prot
MSGI1_102069	NODE_33623_length_131_cov_16.763359	4.7	4.8	32.1	6.8	0	-2.2	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_107731	NODE_33631_length_125_cov_51.456001	34.3	30.1	7.6	31.5	0	2.1	2.2	0	glycolysis.glyceraldehyde 3-phosphate dehydrogenase	"GAPCP-1; glyceraldehyde-3-phosphate dehydrogenase  similar to GAPCP-2, glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G16300.1); similar to glyceraldehyde-3-phosphate dehydrogenase [Capsicum annuum] (GB:CAC80377.1); contains Int"
MSGI1_44510	NODE_33633_length_271_cov_9.822878	4.8	12.2	41.8	7.8	0	-2.4	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_121336	NODE_33636_length_61_cov_39.836067	13.2	27.5	14.8	42	0	1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_31042	NODE_33638_length_359_cov_8.874652	1.1	1.7	22.7	3.8	0	-2.6	-4.4	0	misc.UDP glucosyl and glucoronyl transferases	UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G29740.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thal
MSGI1_45137	NODE_3364_length_268_cov_87.567162	93.9	52.9	32.6	67.7	0	1.1	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_66732	NODE_33653_length_190_cov_18.973684	20.1	0	4.6	0.4	-5.3	0	0	0	cell wall.degradation.pectate lyases and polygalacturonases	pectate lyase family protein  Identical to Probable pectate lyase 5 precursor (EC 4.2.2.2) [Arabidopsis Thaliana] (GB:Q9FXD8;GB:Q8L8V9;GB:Q8W116); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G24780.1); similar to pectate lyase
MSGI1_80038	NODE_33656_length_162_cov_9.623457	13.8	14.8	0.2	0	0	0	6.1	4.9	not assigned.unknown	not assigned.unknown
MSGI1_115062	NODE_3367_length_87_cov_423.114929	174.7	66.8	123.5	206.4	-1.4	0	0	-1.6	cell wall.modification	"ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thali"
MSGI1_61974	NODE_33672_length_203_cov_11.201970	0.4	0.4	14.2	13.7	0	0	-5.1	-5.1	protein.degradation.ubiquitin.E3.DCX	DDB1A (UV-damaged DNA-binding protein 1A); DNA binding Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chro
MSGI1_61974	NODE_33672_length_203_cov_11.201970	0.4	0.4	14.2	13.7	0	0	-5.1	-5.1	stress.abiotic.light	DDB1A (UV-damaged DNA-binding protein 1A); DNA binding Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chro
MSGI1_56927	NODE_33675_length_219_cov_12.123287	0	0	6.9	29.2	0	2.1	0	-5.9	protein.degradation.ubiquitin.E3.RING	armadillo/beta-catenin repeat family protein / U-box domain-containing family protein  Identical to E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box domain protein 14) (PUB14) [Arabidopsis Thaliana] (GB:Q8VZ40;GB:Q9SV34); similar to armadillo/be
MSGI1_105768	NODE_33678_length_127_cov_12.740157	0.2	0	27.6	0.5	0	-5.8	-7.1	0	not assigned.unknown	not assigned.unknown
MSGI1_3677	NODE_3368_length_1217_cov_14.196384	21.1	3	7.8	2.9	-2.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_103919	NODE_33683_length_129_cov_5.751938	0.4	0.2	17.1	19	0	0	-5.4	-6.6	not assigned.unknown	not assigned.unknown
MSGI1_121334	NODE_33689_length_61_cov_60.803280	40.5	32.4	72.6	31.7	0	-1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_106733	NODE_33694_length_126_cov_11.039682	0.1	0.8	11.4	4.8	0	0	-6.8	0	not assigned.unknown	not assigned.unknown
MSGI1_89560	NODE_33696_length_147_cov_7.517007	0.5	0.1	19.9	0.7	0	-4.8	-5.3	0	not assigned.unknown	not assigned.unknown
MSGI1_103000	NODE_33701_length_130_cov_5.953846	0	0	11.7	8.4	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_44288	NODE_33706_length_272_cov_32.378677	23.6	16.7	2.2	2.3	0	0	3.4	2.9	not assigned.unknown	not assigned.unknown
MSGI1_97047	NODE_33707_length_137_cov_11.598540	3.8	4.1	22.8	1.3	0	-4.1	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_34645	NODE_33709_length_330_cov_42.324242	25.2	13.2	24.5	86.9	0	1.8	0	-2.7	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G62510.1); similar to 14 kDa polypeptide [Catharanthus rose
MSGI1_63404	NODE_33715_length_199_cov_28.748743	30.7	10.2	3.2	5.2	0	0	3.3	0	cell wall	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41800.1); similar to Os03g0807700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051644.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); contains InterPro domain Galactose-binding l
MSGI1_41046	NODE_3372_length_289_cov_15.487889	2.5	23.5	7.1	25.3	3.2	1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_30933	NODE_3372_length_360_cov_63.172222	42.2	1.6	8.9	0.8	-4.7	0	2.2	0	RNA.regulation of transcription.putative transcription regulator	"pepsin A  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G54400.1); similar to Peptidase A1, pepsin [Medicago truncatula] (GB:ABE83791.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro"
MSGI1_30933	NODE_3372_length_360_cov_63.172222	42.2	1.6	8.9	0.8	-4.7	0	2.2	0	cell wall	"pepsin A  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G54400.1); similar to Peptidase A1, pepsin [Medicago truncatula] (GB:ABE83791.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro"
MSGI1_97855	NODE_33721_length_136_cov_9.610294	5.6	10.4	40.4	26.5	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_78849	NODE_33726_length_164_cov_9.036586	0	0	16.6	7.4	0	0	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_16225	NODE_33728_length_573_cov_22.732985	24.6	16.2	4.3	7.3	0	0	2.5	0	cell.cycle	"CYCD3;3 (CYCLIN D3;3); cyclin-dependent protein kinase core cell cycle genes similar to CYCD3,2 (CYCLIN D3,2), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT5G67260.1); similar to cyclin D [Populus alba] (GB:AAO72990.1); contains InterPr"
MSGI1_35179	NODE_3373_length_326_cov_123.803680	77.3	11.7	32	5.7	-2.7	-2.5	1.3	0	cell wall.pectin*esterases.misc	pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT3G49220.1); similar to pectinesterase inhibitor [Lycoris aurea] (GB:ABJ99595.1); similar to Pectinesterase; Pectinesterase inhibitor [Medicago truncatu
MSGI1_121330	NODE_33739_length_61_cov_14.704918	16.4	25.9	14.8	6.2	0	0	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_19231	NODE_33747_length_519_cov_10.296724	14.3	0.6	10.1	4.6	-4.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_90984	NODE_33748_length_145_cov_5.055172	0	0	9.2	11.4	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_58102	NODE_33764_length_215_cov_33.911629	14.2	35.4	0.2	0	0	0	6.1	6.1	stress.biotic	"PAD4 (PHYTOALEXIN DEFICIENT 4); triacylglycerol lipase Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, anothe"
MSGI1_28696	NODE_33765_length_383_cov_15.227154	32.5	0.6	6.1	0.7	-5.8	0	2.4	0	signalling.receptor kinases.misc	"similar to wound-responsive protein-related [Arabidopsis thaliana] (TAIR:AT3G10985.1); similar to Wound-induced protein WI12, putative [Medicago truncatula] (GB:ABE88200.1); contains InterPro domain Wound-induced WI12; (InterPro:IPR009798)"
MSGI1_28696	NODE_33765_length_383_cov_15.227154	32.5	0.6	6.1	0.7	-5.8	0	2.4	0	stress.abiotic.touch/wounding	"similar to wound-responsive protein-related [Arabidopsis thaliana] (TAIR:AT3G10985.1); similar to Wound-induced protein WI12, putative [Medicago truncatula] (GB:ABE88200.1); contains InterPro domain Wound-induced WI12; (InterPro:IPR009798)"
MSGI1_23566	NODE_33779_length_448_cov_17.984375	6.7	28.5	2.3	12	2.1	0	0	0	cell wall	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G20530.1); similar to Protein kinase [Medicago truncatula] (GB:ABE83211.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contai
MSGI1_23566	NODE_33779_length_448_cov_17.984375	6.7	28.5	2.3	12	2.1	0	0	0	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G20530.1); similar to Protein kinase [Medicago truncatula] (GB:ABE83211.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contai
MSGI1_50428	NODE_33782_length_244_cov_38.143444	24.9	56.5	22.9	25.9	1.2	0	0	1.1	protein.degradation.ubiquitin.E3.RING	ATL8; protein binding / zinc ion binding  Identical to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8) (ATL1R) [Arabidopsis Thaliana] (GB:Q8LC69;GB:Q9S783); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]
MSGI1_86148	NODE_33786_length_152_cov_15.197369	6.1	1.9	32.2	2.8	0	-3.5	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_81765	NODE_33788_length_159_cov_6.364780	14.3	2.9	0	0	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_68811	NODE_33796_length_185_cov_21.270269	22.5	8.6	3.2	3.5	0	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_54791	NODE_33800_length_227_cov_11.026432	87.2	82.2	127	31.2	0	-2	0	1.4	not assigned.unknown	not assigned.unknown
MSGI1_21617	NODE_33809_length_475_cov_14.164210	9.7	32.3	41.6	48.2	1.7	0	-2.1	0	misc.dynamin	dynamin family protein  similar to dynamin family protein [Arabidopsis thaliana] (TAIR:AT1G60530.1); similar to OSIGBa0103I21.1 [Oryza sativa (indica cultivar-group)] (GB:CAH65868.1); similar to Os03g0260000 [Oryza sativa (japonica cultivar-group)] (GB:NP
MSGI1_68414	NODE_33810_length_186_cov_42.091396	15.7	22	29.8	8.3	0	-1.8	0	0	"RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family"	zinc finger (B-box type) family protein  similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT4G27310.1); similar to Os06g0298200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057441.1); similar to hypothetical protein [
MSGI1_39603	NODE_33817_length_297_cov_24.404041	19.1	40.4	20.2	15	0	0	0	1.4	not assigned.unknown	not assigned.unknown
MSGI1_47052	NODE_33820_length_259_cov_6.764479	1.2	1.8	17.6	14.4	0	0	-3.9	-3	misc.cytochrome P450	"CYP707A4 (cytochrome P450, family 707, subfamily A, polypeptide 4); oxygen binding Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. similar to CYP707A1 (cytochrome P450, family 707, subfam"
MSGI1_79428	NODE_33821_length_163_cov_4.177914	4.5	21.8	0	0	2.3	0	0	5.4	not assigned.unknown	not assigned.unknown
MSGI1_99481	NODE_33830_length_134_cov_13.179105	13.3	0.2	0	0	-6.1	0	4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_68017	NODE_33834_length_187_cov_5.117647	0.4	0.2	2	12.5	0	0	0	-6	transport.ABC transporters and multidrug resistance systems	"ABC transporter family protein  Identical to White-brown complex homolog protein 13 (WBC13) [Arabidopsis Thaliana] (GB:Q9C8J8;GB:Q8GX48); similar to CER5 (ECERIFERUM 5), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR"
MSGI1_67158	NODE_33836_length_189_cov_15.746032	0.3	1.3	26.4	4.6	0	-2.5	-6.5	0	stress.abiotic.heat	"HSP70B (heat shock protein 70B); ATP binding  similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR:AT3G12580.1); similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); s"
MSGI1_26711	NODE_33838_length_405_cov_17.962963	41.5	16.1	15.9	6.8	-1.4	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_75733	NODE_33850_length_170_cov_12.717647	14.8	20.5	12.6	1.5	0	0	0	3.8	stress.biotic	disease resistance family protein putative disease resistance protein induced by chitin oligomers. similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G25930.1); similar to disease resistance fami
MSGI1_57840	NODE_33858_length_216_cov_5.462963	6.5	50.2	0	0	2.9	0	0	6.6	RNA.regulation of transcription.C3H zinc finger family	CZF1/ZFAR1; transcription factor  similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G55980.1); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR0021
MSGI1_49957	NODE_33869_length_246_cov_28.256098	26	10.9	37.7	55.7	0	0	0	-2.4	"misc.oxidases - copper, flavone etc."	"AT-AER (ALKENAL REDUCTASE); 2-alkenal reductase encodes a 2-alkenal reductase (EC 1.3.1.74), plays a key role in the detoxification of reactive carbonyls Identical to Probable NADP-dependent oxidoreductase P1 (EC 1.3.1.74) (P1) [Arabidopsis Thaliana] (GB"
MSGI1_101239	NODE_33874_length_132_cov_10.439394	0.2	0.7	13.8	20	0	0	-6.1	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_62299	NODE_33878_length_202_cov_29.054455	14.1	0.1	79.1	37.3	-7.1	-1.1	-2.5	-8.5	not assigned.unknown	not assigned.unknown
MSGI1_34798	NODE_33879_length_329_cov_35.878418	51.5	19.7	84	19.4	-1.4	-2.1	0	0	development.late embryogenesis abundant	late embryogenesis abundant family protein / LEA family protein  similar to LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) [Arabidopsis thaliana] (TAIR:AT1G01470.1); similar to Os03g0843300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051862.1); similar to
MSGI1_53729	NODE_33882_length_231_cov_5.415585	0.4	0.4	12.8	16.3	0	0	-5	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_41584	NODE_33884_length_286_cov_14.423077	5.1	24.3	22.1	8.5	2.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_90981	NODE_3389_length_145_cov_112.958618	99	50.9	20.3	23.4	0	0	2.3	0	C1-metabolism.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_90981	NODE_3389_length_145_cov_112.958618	99	50.9	20.3	23.4	0	0	2.3	0	amino acid metabolism.synthesis.serine-glycine-cysteine group.glycine.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_90981	NODE_3389_length_145_cov_112.958618	99	50.9	20.3	23.4	0	0	2.3	0	PS.photorespiration.serine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_33694	NODE_33897_length_337_cov_9.213650	39	9.1	29.2	12.4	-2.1	0	0	0	"misc.gluco-, galacto- and mannosidases"	"BGAL8 (beta-glactosidase 8); beta-galactosidase putative beta-galactosidase (BGAL8 gene) similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL9 (BETA GALACTOSIDASE 9), beta-galactosidase [A"
MSGI1_33694	NODE_33897_length_337_cov_9.213650	39	9.1	29.2	12.4	-2.1	0	0	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL8 (beta-glactosidase 8); beta-galactosidase putative beta-galactosidase (BGAL8 gene) similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL9 (BETA GALACTOSIDASE 9), beta-galactosidase [A"
MSGI1_112528	NODE_33908_length_109_cov_57.238533	8	36	7.5	13.3	2.2	0	0	0	cell wall.cellulose synthesis.cellulose synthase	"IRX3 (IRREGULAR XYLEM 3, MURUS 10); cellulose synthase encodes a xylem-specific cellulose synthase Identical to Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) (CESA7) [Arabidopsis Thal"
MSGI1_92428	NODE_33911_length_143_cov_7.223776	133.4	43.5	14.5	21.1	-1.6	0	3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_121317	NODE_33918_length_61_cov_26.016394	0.2	97.6	14.4	199.3	8.9	3.8	-6.2	-1	not assigned.unknown	not assigned.unknown
MSGI1_65578	NODE_33921_length_193_cov_5.917099	0.4	0.3	11.6	7.5	0	0	-4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_106731	NODE_33926_length_126_cov_8.944445	0.5	0.4	14.3	16.3	0	0	-4.8	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_64836	NODE_33948_length_195_cov_5.958974	0	0	12.7	10.4	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_121314	NODE_3395_length_61_cov_153.688522	95.1	60.4	0	0	0	0	7.6	6.9	not assigned.unknown	not assigned.unknown
MSGI1_116920	NODE_33950_length_71_cov_16.943663	11.2	4.2	0	0	0	0	4.5	0	protein.degradation.serine protease	"SCPL29 (serine carboxypeptidase-like 29); serine carboxypeptidase  similar to SCPL26 (serine carboxypeptidase-like 26), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G35780.1); similar to Serine carboxypeptidase II-2 precursor (CP-MII.2) [Conta"
MSGI1_56653	NODE_33961_length_220_cov_7.690909	0.6	0.6	25.2	11.8	0	0	-5.4	-4.3	not assigned.unknown	not assigned.unknown
MSGI1_97849	NODE_33965_length_136_cov_8.492647	7.1	9.1	19.5	3.1	0	-2.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_91704	NODE_33967_length_144_cov_9.500000	2.7	1.1	21.6	2.4	0	-3.2	-3	0	transport.peptides and oligopeptides	"proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G52190.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32296.1); sim"
MSGI1_66307	NODE_33967_length_191_cov_8.219895	4	4.4	25.6	6	0	-2.1	-2.7	0	secondary metabolism.isoprenoids.non-mevalonate pathway	MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2)  Identical to Membrane-anchored ubiquitin-fold protein 2 (Membrane-anchored ub-fold protein 2) (AtMUB2) (NTGP5) (MUB2) [Arabidopsis Thaliana] (GB:Q8LCS8;GB:Q9LF36); similar to MUB1 (MEMBRANE-ANCHORED UBIQ
MSGI1_105763	NODE_33970_length_127_cov_3.181102	2.7	6.5	55.3	3.7	0	-3.9	-4.4	0	not assigned.unknown	not assigned.unknown
MSGI1_121310	NODE_33970_length_61_cov_16.704918	0	0	13.6	17.7	0	0	-4.8	-5.1	protein.synthesis.initiation	"ZLL (ZWILLE) Translation initiation factor. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Identical t"
MSGI1_111207	NODE_33971_length_120_cov_12.216666	11.3	5.8	0	0	0	0	4.5	0	cell wall	"endomembrane protein 70, putative  similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT5G25100.1); similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT5G10840.1); similar to endomembrane protein 70, putativ"
MSGI1_111207	NODE_33971_length_120_cov_12.216666	11.3	5.8	0	0	0	0	4.5	0	DNA.unspecified	"endomembrane protein 70, putative  similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT5G25100.1); similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT5G10840.1); similar to endomembrane protein 70, putativ"
MSGI1_79427	NODE_33971_length_163_cov_13.889570	11.9	18.3	35	24.2	0	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_105762	NODE_33972_length_127_cov_9.496063	1	3.8	19.4	3.7	0	-2.4	-4.3	0	not assigned.unknown	not assigned.unknown
MSGI1_121309	NODE_33975_length_61_cov_33.639343	20.1	24.6	6.4	5.4	0	0	0	2.2	not assigned.unknown	not assigned.unknown
MSGI1_34797	NODE_33980_length_329_cov_47.091187	45.3	33.6	14.7	15.4	0	0	1.6	0	RNA.RNA binding	RNA recognition motif (RRM)-containing protein  similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G55550.1); similar to Os07g0584500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060120.1); similar to RNA reco
MSGI1_121307	NODE_33981_length_61_cov_50.704918	22.2	13.8	4.4	8.2	0	0	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_25534	NODE_33982_length_420_cov_17.657143	8.3	12	0.1	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_59057	NODE_3399_length_212_cov_17.566038	3.5	14.7	5.2	1.5	0	0	0	3.3	not assigned.unknown	not assigned.unknown
MSGI1_62298	NODE_33991_length_202_cov_7.569307	6.2	8.7	4.2	20	0	2.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_65195	NODE_34009_length_194_cov_8.036082	25	15.7	158.6	10.4	0	-3.9	-2.7	0	protein.degradation.cysteine protease	"cysteine proteinase, putative  similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G48350.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (Int"
MSGI1_114152	NODE_34020_length_96_cov_68.260414	31.1	41.4	87.6	9.6	0	-3.2	-1.5	2.1	not assigned.unknown	not assigned.unknown
MSGI1_101236	NODE_34038_length_132_cov_12.621212	0.4	0.3	11.3	10.4	0	0	-4.8	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_112640	NODE_34050_length_108_cov_35.907406	29.8	9.9	7.8	8	0	0	1.9	0	"misc.oxidases - copper, flavone etc."	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_94712	NODE_34058_length_140_cov_17.307142	16.5	13.4	0.5	1.7	0	0	5	0	not assigned.unknown	not assigned.unknown
MSGI1_93973	NODE_34066_length_141_cov_4.900709	0	0	11.8	19.9	0	0	-4.6	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_93972	NODE_34066_length_141_cov_49.744682	25.5	25.1	0	0	0	0	5.7	5.6	protein.degradation	"latex-abundant protein, putative (AMC7) / caspase family protein  similar to AMC6/ATMCP2B (TYPE-II METACASPASES), caspase/ cysteine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT1G79330.1); similar to latex-abundant protein [Hevea brasiliensis] (GB:A"
MSGI1_80036	NODE_34069_length_162_cov_9.518518	3.8	2.5	20.9	6.3	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_63711	NODE_34069_length_198_cov_5.207071	0	0	4.3	13.1	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_18575	NODE_3407_length_529_cov_19.266541	4.4	17.3	24.9	2.7	0	-3.2	-2.5	2.7	not assigned.unknown	not assigned.unknown
MSGI1_117068	NODE_34071_length_70_cov_17.957144	15.6	5.5	2.2	1.5	0	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_121300	NODE_34076_length_61_cov_18.163935	11.2	11.1	0	0	0	0	4.5	4.5	protein.synthesis.misc ribososomal protein	ATRPL23A (RIBOSOMAL PROTEIN L23A); RNA binding / structural constituent of ribosome Encodes a putative ribosomal protein L23a (AtrpL23a). Identical to 60S ribosomal protein L23a-1 (AtRPL23A-1) (RPL23AA) [Arabidopsis Thaliana] (GB:Q8LD46;GB:O48553;GB:O806
MSGI1_84247	NODE_34077_length_155_cov_4.580645	4.5	1.6	14.9	14.6	0	0	0	-3.2	"misc.beta 1,3 glucan hydrolases"	"BG1 (BETA-1,3-GLUCANASE 1); hydrolase, hydrolyzing O-glycosyl compounds encodes a member of glycosyl hydrolase family 17 similar to BGL2 (PATHOGENESIS-RELATED PROTEIN 2), glucan 1,3-beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidops"
MSGI1_117850	NODE_34083_length_64_cov_65.078125	42.6	31.6	15.2	43	0	1.5	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_72872	NODE_34090_length_176_cov_48.744320	65.8	4.1	28.5	7	-4	-2	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_111206	NODE_34092_length_120_cov_68.966667	65.9	72.3	24	31.4	0	0	1.5	1.2	not assigned.unknown	not assigned.unknown
MSGI1_6405	NODE_34094_length_946_cov_18.807611	8.7	61	31.8	5.6	2.8	-2.5	-1.9	3.4	RNA.regulation of transcription.C3H zinc finger family	CZF1/ZFAR1; transcription factor  similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G55980.1); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR0021
MSGI1_43686	NODE_34095_length_275_cov_6.338182	1.1	2	15.6	6.6	0	0	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_80035	NODE_34099_length_162_cov_9.154321	0	0	10.5	12.4	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_78847	NODE_34101_length_164_cov_6.823171	2	7.6	15.6	10.5	0	0	-3	0	signalling.receptor kinases.Catharanthus roseus-like RLK1	"protein kinase, putative  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G54380.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G59700.1); similar to protein kinase family protein [Arabidopsis thaliana] ("
MSGI1_114439	NODE_34102_length_93_cov_15.559140	8	5.4	25.3	2.9	0	-3.1	0	0	protein.degradation.cysteine protease	"cysteine proteinase, putative  similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G48350.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (Int"
MSGI1_78316	NODE_34107_length_165_cov_111.866669	33.5	84	93.4	21.1	1.3	-2.1	-1.5	2	not assigned.unknown	not assigned.unknown
MSGI1_121299	NODE_34113_length_61_cov_8.508197	5	0.9	14.4	1.6	0	-3.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_58098	NODE_34115_length_215_cov_23.781395	23.8	40.5	116.8	41.6	0	-1.5	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_101232	NODE_34132_length_132_cov_24.886364	13.1	60.6	40.8	58.7	2.2	0	-1.6	0	RNA.regulation of transcription.MYB domain transcription factor family	MYB111 (myb domain protein 111); DNA binding / transcription factor Encodes a putative transcription factor (MYB48). Identical to Transcription factor MYB48 (Myb-related protein 48) (AtMYB48) (MYB48) [Arabidopsis Thaliana] (GB:Q9LX82;GB:Q4JL82;GB:Q67YJ3)
MSGI1_75215	NODE_34142_length_171_cov_5.409357	0.5	0.7	8.6	12.8	0	0	0	-4.2	not assigned.unknown	not assigned.unknown
MSGI1_83004	NODE_34149_length_157_cov_30.515924	19.1	0.3	0	0	-6	0	5.3	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_83004	NODE_34149_length_157_cov_30.515924	19.1	0.3	0	0	-6	0	5.3	0	misc.GDSL-motif lipase	ATLTL1/LTL1 (LI-TOLERANT LIPASE 1); carboxylic ester hydrolase  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G33370.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipo
MSGI1_116919	NODE_34157_length_71_cov_72.281693	8.6	15.8	0.4	0.8	0	0	0	4.3	not assigned.unknown	not assigned.unknown
MSGI1_109727	NODE_34161_length_123_cov_11.756098	0.5	11.4	1.6	5.4	4.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_121295	NODE_34167_length_61_cov_36.409836	18.7	8.8	0	0	0	0	5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_121294	NODE_34169_length_61_cov_55.081966	42.7	59	0	0	0	0	6.4	6.9	amino acid metabolism.synthesis.aspartate family.methionine.cystathionine beta-lyase	"MTO1 (METHIONINE OVERACCUMULATION 1) encodes a cystathionine gamma-synthase, which performs the first committed step in methionine biosynthesis. A conserved motif of 13 amino acids in the first exon is required for posttranscriptional autoregulation. Thi"
MSGI1_111100	NODE_34171_length_121_cov_50.892563	8.5	37.3	27.2	15.4	2.1	0	0	0	transport.amino acids	"AAP5 (amino acid permease 5); amino acid permease amino acid permease 5 similar to AAP4 (amino acid permease 4), amino acid permease [Arabidopsis thaliana] (TAIR:AT5G63850.1); similar to AAP3 (amino acid permease 3), amino acid permease [Arabidopsis thal"
MSGI1_27937	NODE_34173_length_391_cov_13.340154	16.5	6.9	0	0	0	0	5	0	cell.organisation	FRA1 (FRAGILE FIBER 1); microtubule motor encodes a kinesin-like protein with an N-terminal microtubule binding motor domain. Protein is localized to the periphery of the cytoplasm and mutants in the gene exhibit altered orientation of cellulose microfib
MSGI1_121293	NODE_34174_length_61_cov_33.459015	13.1	5.6	57	16.1	0	-1.8	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_101230	NODE_34178_length_132_cov_6.583333	0.1	0	2.5	14.3	0	0	0	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_59337	NODE_3419_length_211_cov_28.947866	8.5	17.5	1.1	1.3	0	0	0	3.8	development.unspecified	"early nodule-specific protein, putative  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G14450.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE87642.1); contains InterPro domain Lipolytic enzym"
MSGI1_59337	NODE_3419_length_211_cov_28.947866	8.5	17.5	1.1	1.3	0	0	0	3.8	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_71441	NODE_34196_length_179_cov_6.189944	0	0	13.6	39.1	0	1.5	-4.8	-6.3	not assigned.unknown	not assigned.unknown
MSGI1_73328	NODE_34199_length_175_cov_8.748571	0	0	22.5	19.4	0	0	-5.5	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_78315	NODE_34209_length_165_cov_6.103030	1.7	3.5	15.5	9.1	0	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_116307	NODE_34220_length_76_cov_18.644737	11	10.1	0	0	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_55850	NODE_34231_length_223_cov_9.219731	11.8	0.9	0.5	0	0	0	4.6	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase, putative  similar to lipoxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G67560.1); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to LOX2 (LIPOXYGENASE 2) [Arabi"
MSGI1_14423	NODE_34233_length_618_cov_16.177994	15.1	2.2	17.9	1.5	0	-3.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_110713	NODE_34234_length_122_cov_10.237705	49.1	2.2	4.5	1.6	-4.5	0	3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_66730	NODE_34236_length_190_cov_12.578947	4.5	7.6	36.3	10	0	-1.9	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_100315	NODE_34237_length_133_cov_6.195489	0	0	10.3	11.6	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_82369	NODE_34242_length_158_cov_13.474684	0.5	0.6	28.2	8	0	-1.8	-5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_73815	NODE_34243_length_174_cov_6.683908	0.7	1.6	12.2	3.4	0	0	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_72869	NODE_34246_length_176_cov_6.789773	1.9	2.8	15.8	0.2	0	-6.3	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_78843	NODE_34270_length_164_cov_6.847561	1.1	2.6	5.8	18.1	0	0	0	-2.8	nucleotide metabolism.synthesis.purine.amidophosphoribosyltransferase	"ATASE2/ATD2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2); amidophosphoribosyltransferase Encodes glutamine 5-phosphoribosylpyrophosphate amidotransferase. Mutants are deficient in leaf, but not cotyledon, plastid and palisade cell development. M"
MSGI1_54224	NODE_34271_length_229_cov_69.117905	49.1	64.3	14.9	30.1	0	0	1.7	1.1	not assigned.unknown	not assigned.unknown
MSGI1_99477	NODE_34278_length_134_cov_6.500000	0.1	0.7	12.7	4.4	0	0	-7	0	not assigned.unknown	not assigned.unknown
MSGI1_57197	NODE_34278_length_218_cov_14.463303	16.4	15.3	0.9	0.5	0	0	4.2	4.9	not assigned.unknown	not assigned.unknown
MSGI1_98634	NODE_34279_length_135_cov_7.392592	1.7	0.2	15.4	1	0	-3.9	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_23840	NODE_3428_length_443_cov_115.246048	153.2	203.4	0.1	0	0	0	10.6	8.7	not assigned.unknown	not assigned.unknown
MSGI1_54789	NODE_34281_length_227_cov_6.088106	1.9	5	15.5	7.3	0	0	-3	0	transport.ABC transporters and multidrug resistance systems	ATGCN1 (Arabidopsis thaliana general control non-repressible 1) member of GCN subfamily similar to ATGCN4 (Arabidopsis thaliana general control non-repressible 4) [Arabidopsis thaliana] (TAIR:AT3G54540.1); similar to ABC transporter homolog [Populus nigr
MSGI1_31973	NODE_34281_length_351_cov_9.746439	5.3	10.3	0.1	0.2	0	0	0	5.7	stress.biotic	kinase/ protein binding  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G05650.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G11080.1); similar to disease resistance family protein / LRR fa
MSGI1_31973	NODE_34281_length_351_cov_9.746439	5.3	10.3	0.1	0.2	0	0	0	5.7	cell wall	kinase/ protein binding  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G05650.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G11080.1); similar to disease resistance family protein / LRR fa
MSGI1_4780	NODE_3430_length_1081_cov_61.937096	47	18	24.3	19.7	-1.4	0	0	0	tetrapyrrole synthesis.uroporphyrinogen decarboxylase	"HEME2; uroporphyrinogen decarboxylase  Identical to Uroporphyrinogen decarboxylase, chloroplast precursor (EC 4.1.1.37) (URO-D) (UPD) [Arabidopsis Thaliana] (GB:O22886); similar to HEME1, uroporphyrinogen decarboxylase [Arabidopsis thaliana] (TAIR:AT3G14"
MSGI1_77786	NODE_3430_length_166_cov_80.638557	0.4	0.2	48.4	2.7	0	-4.2	-6.9	0	not assigned.unknown	not assigned.unknown
MSGI1_63403	NODE_3430_length_199_cov_63.145729	9.9	59.5	13.8	8.7	2.6	0	0	2.8	RNA.regulation of transcription.MADS box transcription factor family	"AGL6 (AGAMOUS LIKE-6); DNA binding / transcription factor sequence suggests this encodes a MADS-box transcription factor Identical to Agamous-like MADS-box protein AGL6 (AGL6) [Arabidopsis Thaliana] (GB:P29386); similar to AGL13 (AGAMOUS-LIKE 13), DNA bi"
MSGI1_71440	NODE_34300_length_179_cov_14.821229	18.4	31.7	0.2	0	0	0	6.5	6	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G26580.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE89318.1); contains InterPro domain Zinc fi"
MSGI1_26263	NODE_34309_length_411_cov_12.854014	6.8	6.1	36	3.1	0	-3.5	-2.4	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	DREB1A (DEHYDRATION RESPONSE ELEMENT B1A); DNA binding / transcription factor/ transcriptional activator encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members
MSGI1_26263	NODE_34309_length_411_cov_12.854014	6.8	6.1	36	3.1	0	-3.5	-2.4	0	stress.abiotic.drought/salt	DREB1A (DEHYDRATION RESPONSE ELEMENT B1A); DNA binding / transcription factor/ transcriptional activator encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members
MSGI1_106726	NODE_34323_length_126_cov_16.238094	6.2	4.7	23.6	29.5	0	0	0	-2.6	transport.ABC transporters and multidrug resistance systems	ATGCN4 (Arabidopsis thaliana general control non-repressible 4) member of GCN subfamily similar to ATGCN3 (Arabidopsis thaliana general control non-repressible 3) [Arabidopsis thaliana] (TAIR:AT1G64550.1); similar to Os03g0441500 [Oryza sativa (japonica c
MSGI1_108708	NODE_34325_length_124_cov_7.000000	0.5	0.8	15.7	0	0	-5	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_38864	NODE_34327_length_301_cov_28.830564	29.6	105.6	44.5	16.7	1.8	-1.4	0	2.7	not assigned.unknown	not assigned.unknown
MSGI1_48818	NODE_34329_length_251_cov_6.840638	9.7	1.1	52.8	2.9	0	-4.2	-2.4	0	transporter.sugars	"ATINT2 (INOSITOL TRANSPORTER 2); carbohydrate transporter/ sugar porter  Identical to Probable inositol transporter 2 (INT2) [Arabidopsis Thaliana] (GB:Q9C757); similar to ATINT3 (INOSITOL TRANSPORTER 3), carbohydrate transporter/ sugar porter [Arabidops"
MSGI1_81193	NODE_34332_length_160_cov_5.287500	4	28.9	0.4	0.2	2.9	0	0	7.2	not assigned.unknown	not assigned.unknown
MSGI1_65945	NODE_34332_length_192_cov_10.348958	20.9	3.9	19.4	3.8	-2.4	0	0	0	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit JP650 precursor (Aromatic-rich glycoprotein JP650) (JP650) [Arabidopsis Thaliana] (GB:P92990;GB:O64599;GB:Q8H7B8;GB:Q93ZQ4); simil"
MSGI1_92424	NODE_34336_length_143_cov_6.622377	0	0	14.8	9.8	0	0	-4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_85503	NODE_34341_length_153_cov_12.379085	7.5	10	25.9	6.1	0	-2.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_87506	NODE_34342_length_150_cov_10.826667	0	0	20.5	23.1	0	0	-5.4	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_81191	NODE_34352_length_160_cov_13.787500	1.4	4	5.7	28.4	0	2.3	0	-2.8	not assigned.unknown	not assigned.unknown
MSGI1_31041	NODE_34370_length_359_cov_13.646239	3.3	12.3	1.3	1	0	0	0	3.6	protein.degradation.ubiquitin.E3.SCF.FBOX	F-box family protein (FBX3)  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G61590.1); similar to H0701F11.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86135.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contai
MSGI1_98631	NODE_34375_length_135_cov_8.044444	0.2	0.7	10.4	15.9	0	0	0	-4.5	secondary metabolism.phenylpropanoids	"aminotransferase class I and II family protein  similar to AAT/ATAAT/MEE17 (maternal effect embryo arrest 17), aspartate transaminase [Arabidopsis thaliana] (TAIR:AT2G22250.3); similar to Os09g0453800 [Oryza sativa (japonica cultivar-group)] (GB:NP_00106"
MSGI1_28935	NODE_3438_length_380_cov_219.805267	142.4	65	107.2	110.4	-1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_18908	NODE_3438_length_524_cov_32.627861	1.8	3.3	25.5	5.3	0	-2.3	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_72433	NODE_34382_length_177_cov_5.310734	0.4	0	6.5	12.2	0	0	0	-4.6	cell.organisation	myosin-related  similar to CIP1 (COP1-INTERACTIVE PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G41790.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to Os03g0216900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049388
MSGI1_105757	NODE_3440_length_127_cov_14.141732	7	12.5	0.3	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_102990	NODE_34402_length_130_cov_33.561539	55.3	31.3	18.8	51.2	0	1.4	1.6	0	protein.folding	"CPN20 (CHAPERONIN 20); calmodulin binding Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES. Identical to 20 kDa chaperonin, chloroplast precursor (Protein Cpn21) (Chloroplast protein Cpn10) (Chloroplast chaperonin 1"
MSGI1_18988	NODE_3441_length_523_cov_21.334608	0	0	25.9	20.4	0	0	-5.7	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_30750	NODE_34417_length_362_cov_25.693371	17.6	56.2	12.6	44.9	1.7	1.8	0	0	hormone metabolism.auxin.signal transduction	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_30750	NODE_34417_length_362_cov_25.693371	17.6	56.2	12.6	44.9	1.7	1.8	0	0	transport.misc	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_30750	NODE_34417_length_362_cov_25.693371	17.6	56.2	12.6	44.9	1.7	1.8	0	0	transport.amino acids	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_45134	NODE_3442_length_268_cov_123.029854	18.5	62.2	27.3	14.5	1.7	0	0	2.1	RNA.regulation of transcription.GRAS transcription factor family	scarecrow-like transcription factor 14 (SCL14)  similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G29060.1); similar to SCARECROW-like protein [Lilium lon (GB:BAC77269.2); contains InterPro domain GRAS transcription
MSGI1_121275	NODE_34426_length_61_cov_135.672134	158.7	82.3	48.3	75	0	0	1.7	0	secondary metabolism.isoprenoids.non-mevalonate pathway	geranylgeranyl reductase Encodes for a multifunctional protein with geranylgeranyl reductase activity shown to catalyze the reduction of prenylated geranylgeranyl-chlorophyll a to phytyl-chlorophyll a (chlorophyll a) and free geranylgeranyl pyrophosphate
MSGI1_88162	NODE_34430_length_149_cov_7.919463	3	1.1	11.8	16.2	0	0	0	-3.9	not assigned.unknown	not assigned.unknown
MSGI1_55289	NODE_34432_length_225_cov_8.853333	0	0.1	12.1	7.7	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_121274	NODE_34436_length_61_cov_20.442623	9.3	11.5	0.4	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_121273	NODE_34444_length_61_cov_20.950819	12.7	10.1	0	0	0	0	4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_25191	NODE_34446_length_425_cov_25.120001	16.8	23.4	41.7	8.9	0	-2.2	0	0	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G28440.1); similar to leucine-rich repeat receptor-like protein kinase [Pyru"
MSGI1_25191	NODE_34446_length_425_cov_25.120001	16.8	23.4	41.7	8.9	0	-2.2	0	0	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G28440.1); similar to leucine-rich repeat receptor-like protein kinase [Pyru"
MSGI1_23393	NODE_3445_length_451_cov_264.039917	177.2	89.1	53.7	93.7	0	0	1.7	0	lipid metabolism.FA synthesis and FA elongation.ACP protein	ACP4 (ACYL CARRIER PROTEIN 4) encodes an acyl carrier protein predominantly expressed in leaves. Gene expression is upregulated by light. similar to ACP1 (ACYL CARRIER PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G05020.1); similar to acyl carrier protein [
MSGI1_105754	NODE_34455_length_127_cov_7.582677	0.5	0.2	18.3	10.7	0	0	-5.2	-5.7	not assigned.unknown	not assigned.unknown
MSGI1_57838	NODE_34458_length_216_cov_31.199074	22.6	1	7.9	0.9	-4.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_121271	NODE_34461_length_61_cov_9.704918	0.2	0	12.4	12.8	0	0	-6	-4.7	minor CHO metabolism.others	aldose 1-epimerase family protein  similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT3G61610.1); similar to Os04g0658000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054126.1); similar to OSIGBa0132E09-OSIGBa0108L24.1 [Oryz
MSGI1_76746	NODE_34493_length_168_cov_7.785714	0	0	14.9	21.3	0	0	-4.9	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_42759	NODE_34493_length_280_cov_80.528572	41.8	20.1	15.9	15.3	0	0	1.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L36a/L44 (RPL36aB)  Identical to 60S ribosomal protein L36a (RPL36AB) [Arabidopsis Thaliana] (GB:O23290;GB:Q7GD84); similar to 60S ribosomal protein L36a/L44 (RPL36aA) [Arabidopsis thaliana] (TAIR:AT3G23390.1); similar to 60S ribosom
MSGI1_70168	NODE_34498_length_182_cov_7.335165	3	2.4	17	0.8	0	-4.4	0	0	signalling.calcium	calcium-binding EF hand family protein  similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT3G29000.1); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE80363.1); contains InterPro domain EF-Hand type; (InterPro
MSGI1_9963	NODE_34508_length_763_cov_14.771953	9.1	10.5	0.6	0.3	0	0	0	5.1	RNA.regulation of transcription.putative transcription regulator	transducin family protein / WD-40 repeat family protein  similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G45620.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94369.1); c
MSGI1_81761	NODE_34511_length_159_cov_112.427673	109	28.5	14.8	19.6	-1.9	0	2.9	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_81761	NODE_34511_length_159_cov_112.427673	109	28.5	14.8	19.6	-1.9	0	2.9	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_53444	NODE_34514_length_232_cov_6.431035	4	3.8	20.2	12.3	0	0	-2.3	0	stress.abiotic.heat	DNAJ heat shock N-terminal domain-containing protein  similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G39150.1); similar to Os09g0493800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063548.1); similar
MSGI1_121267	NODE_34515_length_61_cov_76.622948	5	43.9	18	48.6	3.1	1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_99471	NODE_34518_length_134_cov_13.738806	2.4	2.1	27.1	4.6	0	-2.6	-3.5	0	hormone metabolism.ethylene.induced-regulated-responsive-activated	"esterase, putative  similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT2G23580.1); similar to ethylene-induced esterase [Citrus sinensis] (GB:AAK58599.1); similar to protein S [Catharanthus roseus] (GB:AAU95203.1); contai"
MSGI1_99471	NODE_34518_length_134_cov_13.738806	2.4	2.1	27.1	4.6	0	-2.6	-3.5	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"esterase, putative  similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT2G23580.1); similar to ethylene-induced esterase [Citrus sinensis] (GB:AAK58599.1); similar to protein S [Catharanthus roseus] (GB:AAU95203.1); contai"
MSGI1_67154	NODE_34527_length_189_cov_8.153440	11.5	7.4	1	12.2	0	3.6	0	0	misc.UDP glucosyl and glucoronyl transferases	"UGT73B5 (UDP-glucosyl transferase 73B5); UDP-glycosyltransferase/ transferase, transferring glycosyl groups  similar to UGT73B4, UDP-glycosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G15490.1); similar to UGT7"
MSGI1_121266	NODE_34527_length_61_cov_52.245903	30.8	0	0	0	-5.9	0	5.9	0	cell wall	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25460.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain Protein of unknown function DUF642
MSGI1_112037	NODE_34530_length_113_cov_12.610620	0	0	20.2	11.9	0	0	-5.3	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_73324	NODE_34542_length_175_cov_9.211429	2.2	2.7	22.9	1.3	0	-4.1	-3.4	0	transport.nitrate	"ATNRT1:2 (NITRATE TRANSPORTER 1:2); calcium ion binding / transporter Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots. similar to nitrate transporter, putative [Arabidopsis thal"
MSGI1_97839	NODE_34543_length_136_cov_8.022058	0.2	0.2	14.3	6.6	0	0	-6.2	0	not assigned.unknown	not assigned.unknown
MSGI1_27335	NODE_34546_length_398_cov_9.530150	0.2	0	5.4	26.3	0	2.3	0	-5.7	not assigned.unknown	not assigned.unknown
MSGI1_77782	NODE_34562_length_166_cov_34.421688	24.1	94.3	40.7	25.4	2	0	0	1.9	RNA.regulation of transcription.C3H zinc finger family	CZF1/ZFAR1; transcription factor  similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G55980.1); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR0021
MSGI1_112932	NODE_34563_length_106_cov_18.301888	16.8	6.8	86.2	34.1	0	-1.3	-2.4	-2.3	transporter.sugars	"ATINT1 (INOSITOL TRANSPORTER 1); carbohydrate transporter/ sugar porter  Identical to Probable inositol transporter 1 (INT1) [Arabidopsis Thaliana] (GB:Q8VZR6;GB:O22848); similar to ATINT2 (INOSITOL TRANSPORTER 2), carbohydrate transporter/ sugar porter"
MSGI1_71056	NODE_34577_length_180_cov_8.338889	1.2	0.8	12.3	22.3	0	0	0	-4.8	development.unspecified	MSI2 (NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2) Encodes a WD-40 repeat protein similar to yeast MSI1. Identical to WD-40 repeat protein MSI2 (MSI2) [Arabidopsis Thaliana] (GB:O22468); similar to MSI3 (NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3)
MSGI1_71056	NODE_34577_length_180_cov_8.338889	1.2	0.8	12.3	22.3	0	0	0	-4.8	RNA.regulation of transcription.Nucleosome/chromatin assembly factor group	MSI2 (NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2) Encodes a WD-40 repeat protein similar to yeast MSI1. Identical to WD-40 repeat protein MSI2 (MSI2) [Arabidopsis Thaliana] (GB:O22468); similar to MSI3 (NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3)
MSGI1_16924	NODE_3458_length_559_cov_290.722717	98.9	48.3	20.3	32.3	-1	0	2.3	0	protein.synthesis.misc ribososomal protein	"40S ribosomal protein S15 (RPS15D)  Identical to 40S ribosomal protein S15-4 (RPS15D) [Arabidopsis Thaliana] (GB:Q9FY64); Identical to 40S ribosomal protein S15-1 (RPS15A) [Arabidopsis Thaliana] (GB:Q08112); similar to RPS15 (RIBOSOMAL PROTEIN S15), stru"
MSGI1_35177	NODE_34580_length_326_cov_11.742332	3	3.2	258	5.9	0	-5.5	-6.4	0	not assigned.unknown	not assigned.unknown
MSGI1_63401	NODE_34581_length_199_cov_11.542713	2.3	2.6	30.4	3.3	0	-3.2	-3.7	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_63401	NODE_34581_length_199_cov_11.542713	2.3	2.6	30.4	3.3	0	-3.2	-3.7	0	secondary metabolism.flavonoids.dihydroflavonols	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G10500.1); similar to H0303A11-B0406H05.3 [Oryza sativa (indica cultivar-group)] (GB:CAH67943.1); contains"
MSGI1_91698	NODE_34585_length_144_cov_7.312500	0.4	0.3	14.7	4.6	0	0	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_94705	NODE_3459_length_140_cov_39.785713	21.9	33.9	65.5	47.2	0	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_38863	NODE_34593_length_301_cov_14.142858	11.3	26.8	1.3	6.3	0	0	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_117311	NODE_34596_length_68_cov_46.632355	23.5	51.5	312.9	141.4	0	-1.1	-3.7	-1.5	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT3G53980.2); similar to hypothetical protein [Plantago major]
MSGI1_43912	NODE_34608_length_274_cov_9.394160	13.7	0.3	2.5	0.4	-5.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_105752	NODE_34614_length_127_cov_13.551181	3.7	3.8	28.1	5.9	0	-2.3	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_99468	NODE_34639_length_134_cov_12.097015	0.9	11.7	3.5	21.3	0	2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_80627	NODE_34658_length_161_cov_8.875776	4.6	10.5	34.6	14	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_121258	NODE_34659_length_61_cov_28.295082	16.8	16.9	0	0	0	0	5.1	5.1	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL3 (beta-galactosidase 3); beta-galactosidase putative beta-galactosidase (BGAL3 gene) similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT1G45130.1); similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase ["
MSGI1_121258	NODE_34659_length_61_cov_28.295082	16.8	16.9	0	0	0	0	5.1	5.1	"misc.gluco-, galacto- and mannosidases"	"BGAL3 (beta-galactosidase 3); beta-galactosidase putative beta-galactosidase (BGAL3 gene) similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT1G45130.1); similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase ["
MSGI1_77781	NODE_34665_length_166_cov_11.415663	1.6	1	48.4	15.7	0	-1.6	-4.9	-4	not assigned.unknown	not assigned.unknown
MSGI1_66302	NODE_34666_length_191_cov_7.460733	0	0	11.7	10.5	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_53142	NODE_34676_length_233_cov_7.858369	1.7	5.7	14.9	4.8	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_113042	NODE_34681_length_105_cov_20.066668	16.6	6.5	0	0	0	0	5.1	0	hormone metabolism.auxin.induced-regulated-responsive-activated	"similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44500.1); similar to Plant protein family, putative [Medicago truncatula] (GB:ABE79402.1); similar to H+-transporting two-sector ATPase, delta (OSCP) subunit; Hypothetical plant protein [Medic"
MSGI1_79419	NODE_34681_length_163_cov_33.871166	24.2	38.4	16.5	8.5	0	0	0	2.2	not assigned.unknown	not assigned.unknown
MSGI1_82365	NODE_34687_length_158_cov_6.816456	12.6	10.7	7.5	0.2	0	0	0	5.7	not assigned.unknown	not assigned.unknown
MSGI1_110709	NODE_34691_length_122_cov_5.122951	2.1	4.1	18	4.7	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_92419	NODE_34693_length_143_cov_12.377623	11.8	16.2	5	2.5	0	0	0	2.7	not assigned.unknown	not assigned.unknown
MSGI1_57196	NODE_34702_length_218_cov_29.711010	14.6	16.3	9.4	28.7	0	1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_93962	NODE_34705_length_141_cov_7.673759	1.9	1.7	15.9	6.2	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_57195	NODE_3471_length_218_cov_35.536697	24.5	11.8	70.3	15.6	0	-2.2	-1.5	0	protein.degradation	catalytic/ coenzyme binding  Identical to Protein At5g02240 [Arabidopsis Thaliana] (GB:Q94EG6;GB:Q9LZK8); similar to catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT2G37660.1); similar to Os05g0110300 [Oryza sativa (japonica cultivar-group)] (G
MSGI1_36260	NODE_34711_length_318_cov_7.493711	11.7	0.2	4.5	2.9	-5.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_81758	NODE_34714_length_159_cov_12.534591	0	0	29.8	9.8	0	0	-5.9	0	not assigned.unknown	not assigned.unknown
MSGI1_100306	NODE_34727_length_133_cov_12.398497	15	4.9	1.5	0.3	0	0	3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_39287	NODE_34731_length_299_cov_81.287628	44.2	198.2	68.3	58.4	2.2	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_75208	NODE_34732_length_171_cov_9.163743	0	0.1	4	20.6	0	2.4	0	-7.7	not assigned.unknown	not assigned.unknown
MSGI1_100305	NODE_34734_length_133_cov_29.496241	10.7	11.1	44.8	32	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_71939	NODE_34734_length_178_cov_48.814606	72.7	0.5	4.5	0.8	-7.2	0	4	0	not assigned.unknown	not assigned.unknown
MSGI1_117848	NODE_34735_length_64_cov_27.031250	18.9	9.8	0.4	1.6	0	0	5.6	0	not assigned.unknown	not assigned.unknown
MSGI1_74710	NODE_34756_length_172_cov_10.593023	5.1	8.5	83.1	16.6	0	-2.3	-4	0	transport.amino acids	amino acid transporter family protein  similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT2G39130.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABE77592.1); contains InterPro domain Amino acid/p
MSGI1_78839	NODE_34773_length_164_cov_74.158539	64.6	39.9	10.6	9.6	0	0	2.6	2.1	not assigned.unknown	not assigned.unknown
MSGI1_63703	NODE_34797_length_198_cov_5.828283	3.1	9	20.6	19.1	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_121250	NODE_34810_length_61_cov_37.295082	39	27	4.8	6.2	0	0	3	2.1	not assigned.unknown	not assigned.unknown
MSGI1_109712	NODE_34812_length_123_cov_3.804878	0.1	0	12.1	6.8	0	0	-6.9	0	not assigned.unknown	not assigned.unknown
MSGI1_61970	NODE_34819_length_203_cov_13.492611	0	0	29.8	3.4	0	-3.1	-5.9	0	not assigned.unknown	not assigned.unknown
MSGI1_42758	NODE_3482_length_280_cov_5.907143	1.3	1.7	17.2	8.8	0	0	-3.7	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	basic helix-loop-helix (bHLH) family protein  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT3G25710.1); similar to Os08g0432800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061870.1); similar to Helix-loop-he
MSGI1_61969	NODE_34825_length_203_cov_5.995074	2.5	0.5	13.6	0.4	0	-5.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_121249	NODE_34835_length_61_cov_77.426231	2.8	18.5	5.6	7.8	2.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_51878	NODE_34848_length_238_cov_44.344540	16.4	19	43.2	8.1	0	-2.4	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_88863	NODE_34856_length_148_cov_11.574325	0	0.1	13.5	12	0	0	-4.8	-6.9	not assigned.unknown	not assigned.unknown
MSGI1_94699	NODE_34865_length_140_cov_37.585712	10.4	15.3	0	0.2	0	0	0	6.3	signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase	phosphatidylinositol-4-phosphate 5-kinase family protein  similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT3G14270.1); similar to 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding [Arabidopsis
MSGI1_54219	NODE_34890_length_229_cov_8.820961	0	0	7.7	14.9	0	0	0	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_63400	NODE_34894_length_199_cov_14.592965	0.8	1.4	37.7	2.9	0	-3.7	-5.6	0	not assigned.unknown	not assigned.unknown
MSGI1_99460	NODE_34900_length_134_cov_6.522388	0.3	1.1	32.1	4.9	0	-2.7	-6.7	0	not assigned.unknown	not assigned.unknown
MSGI1_114038	NODE_34906_length_97_cov_61.711342	44.9	65.5	29.9	31.5	0	0	0	1.1	not assigned.unknown	not assigned.unknown
MSGI1_35878	NODE_34916_length_321_cov_10.819315	8.7	7.5	29	8.5	0	-1.8	0	0	transport.amino acids	amino acid permease family protein  similar to amino acid permease family protein [Arabidopsis thaliana] (TAIR:AT3G19553.1); similar to Amino acid/polyamine transporter I [Medicago truncatula] (GB:ABE78683.1); contains InterPro domain Amino acid permease-
MSGI1_111804	NODE_34928_length_115_cov_13.965218	0	0.2	9.1	28.3	0	1.6	0	-7.1	signalling.light	CRY2 (CRYPTOCHROME 2) Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved
MSGI1_71053	NODE_34946_length_180_cov_6.444445	0	0	12.3	10.4	0	0	-4.6	0	cell.organisation	nuclear movement family protein  similar to nuclear movement family protein [Arabidopsis thaliana] (TAIR:AT4G27890.1); similar to salt tolerance protein 5-like protein [Solanum tuberosum] (GB:ABB16978.1); contains InterPro domain HSP20-like chaperone; (In
MSGI1_73322	NODE_34961_length_175_cov_10.977143	2.1	6.8	17.9	7.9	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_39988	NODE_34963_length_295_cov_7.233898	0	0	15	15.2	0	0	-4.9	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_26622	NODE_34967_length_406_cov_10.972906	16.2	1.2	10.4	2.2	-3.8	0	0	0	lipid metabolism.FA synthesis and FA elongation.beta ketoacyl CoA synthase	beta-ketoacyl-CoA synthase family protein  Identical to 3-ketoacyl-CoA synthase 12 precursor (EC 2.3.1.-) (KCS-12) (Very-long- chain fatty acid condensing enzyme 12) (VLCFA condensing enzyme 12) (KCS12) [Arabidopsis Thaliana] (GB:Q9SIB2;GB:Q8LFQ0); simil
MSGI1_63399	NODE_34975_length_199_cov_6.135678	1.3	1.3	14.2	6.9	0	0	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_59960	NODE_34986_length_209_cov_15.263158	1.3	18.7	6.1	19.5	3.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_69694	NODE_34996_length_183_cov_6.092896	0	0.1	12.7	6.4	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_112931	NODE_35015_length_106_cov_78.490562	62	76.5	4.7	2.7	0	0	3.7	4.8	not assigned.unknown	not assigned.unknown
MSGI1_58747	NODE_35029_length_213_cov_8.924883	24.9	0.2	13.3	21	-7	0	0	-6.7	stress.biotic	trypsin and protease inhibitor family protein / Kunitz family protein  similar to trypsin and protease inhibitor family protein / Kunitz family protein [Arabidopsis thaliana] (TAIR:AT1G73260.1); similar to Lemir [Lycopersicon esculentum] (GB:AAC63057.1);
MSGI1_114667	NODE_35030_length_91_cov_45.417583	35.2	17.5	10.3	28.5	0	0	1.8	0	mitochondrial electron transport / ATP synthesis.F1-ATPase	"ATP synthase beta chain, mitochondrial, putative  Identical to ATP synthase subunit beta-3, mitochondrial precursor (EC 3.6.3.14) [Arabidopsis Thaliana] (GB:Q9C5A9); similar to ATP synthase beta chain 1, mitochondrial [Arabidopsis thaliana] (TAIR:AT5G086"
MSGI1_60581	NODE_35035_length_207_cov_6.951691	0.1	0.1	16.5	0.4	0	-5.4	-7.4	0	not assigned.unknown	not assigned.unknown
MSGI1_83596	NODE_35038_length_156_cov_14.134615	3.1	0.4	27.6	0.5	0	-5.8	-3.2	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	TNY (TINY); DNA binding / transcription factor encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression
MSGI1_97032	NODE_35059_length_137_cov_17.941607	40.1	8.4	27.7	78.3	-2.3	1.5	0	-3.2	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_47274	NODE_3508_length_258_cov_8.174418	2.8	1.7	24.9	7.4	0	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_104793	NODE_3509_length_128_cov_51.718750	0	0	52.9	21.2	0	-1.3	-6.7	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_35175	NODE_35102_length_326_cov_7.273006	26.6	5	8.3	11	-2.4	0	0	0	secondary metabolism.isoprenoids.terpenoids	terpene synthase/cyclase family protein  similar to lyase/ magnesium ion binding [Arabidopsis thaliana] (TAIR:AT4G16730.1); similar to 24349 (GB:AAD21414.1); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterP
MSGI1_28596	NODE_35119_length_384_cov_9.953125	0.4	0.5	24.6	8.6	0	0	-5.9	0	not assigned.unknown	not assigned.unknown
MSGI1_76740	NODE_35122_length_168_cov_5.410714	1.5	3.4	17.2	7.9	0	0	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_54218	NODE_35129_length_229_cov_17.707424	2.7	16.8	12.2	2.9	2.6	0	0	0	RNA.regulation of transcription.bZIP transcription factor family	"BZO2H3 (basic leucine zipper O2 homolog 3); DNA binding / transcription factor bZIP protein BZO2H3 mRNA, partial cds similar to BZO2H4 (basic leucine zipper O2 homolog 4), transcription factor [Arabidopsis thaliana] (TAIR:AT3G54620.1); similar to Light-i"
MSGI1_115966	NODE_35141_length_79_cov_26.151899	0	0.2	20.5	16.9	0	0	-5.4	-6.4	not assigned.unknown	not assigned.unknown
MSGI1_115756	NODE_35150_length_81_cov_110.197533	43.2	38.8	6.2	18.8	0	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_90964	NODE_35172_length_145_cov_6.158621	0.1	0.1	17.9	8	0	0	-7.5	0	signalling.receptor kinases.thaumatin like	"PR5K (PR5-like receptor kinase); kinase/ transmembrane receptor protein serine/threonine kinase putative receptor serine/threonine kinase PR5K (PR5K) mRNA,  PR5-like receptor kinase similar to receptor serine/threonine kinase, putative [Arabidopsis thali"
MSGI1_74279	NODE_35202_length_173_cov_10.942197	0.9	4.8	14.8	1.9	0	0	-4	0	misc.UDP glucosyl and glucoronyl transferases	UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22360.1); similar to UDP-glycosyltransferase 85A8 [Stevia rebaudiana] (GB:AAR06913.1); contains
MSGI1_59332	NODE_35219_length_211_cov_8.995260	0	0	9.3	12.2	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_69244	NODE_35222_length_184_cov_10.826087	1.1	3.1	24.1	1.8	0	-3.7	-4.5	0	"RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family"	zinc finger (B-box type) family protein  similar to DNA binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G15248.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46419.1); similar to Os02g0176000 [Oryza sativa
MSGI1_117573	NODE_35235_length_66_cov_27.893940	2.5	16.2	0	0	2.7	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_80023	NODE_35247_length_162_cov_12.549383	4.5	12.7	0	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_102049	NODE_35264_length_131_cov_2.862595	1.3	1.9	48.3	6.8	0	-2.8	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_59331	NODE_35277_length_211_cov_16.890995	0	0.1	43.2	10.9	0	-2	-6.4	-6.8	not assigned.unknown	not assigned.unknown
MSGI1_75723	NODE_35299_length_170_cov_61.799999	8.7	29	8	11.3	1.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_8965	NODE_353_length_808_cov_21.230198	1.9	3.8	5	30.6	0	2.6	0	-3	major CHO metabolism.synthesis.starch.AGPase	"APL3 (large subunit of AGP 3) Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isof"
MSGI1_102978	NODE_35320_length_130_cov_6.400000	0.2	0	13.2	0	0	-4.7	-6	0	not assigned.unknown	not assigned.unknown
MSGI1_21198	NODE_35322_length_481_cov_11.374221	4.4	14.7	0	0	0	0	0	4.9	not assigned.unknown	not assigned.unknown
MSGI1_66300	NODE_35333_length_191_cov_5.664921	0.2	0.3	10.8	11.9	0	0	-5.8	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_32181	NODE_35350_length_349_cov_23.237822	6	15.9	61.8	10.5	0	-2.6	-3.4	0	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G25560.1); similar to PGPD14 [Petunia x hybrida] (GB:AAD02556.1); contains InterPro domain Zinc finger, CH"
MSGI1_81752	NODE_35363_length_159_cov_6.547170	1.4	0.9	13.9	7.8	0	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_116305	NODE_3537_length_76_cov_51.671051	63.5	76.1	28.1	69	0	1.3	1.2	0	protein.degradation	cytosol aminopeptidase  Identical to Leucine aminopeptidase 1 (EC 3.4.11.1) (LAP 1) (Leucyl aminopeptidase 1) (Proline aminopeptidase 1) (EC 3.4.11.5) (Prolyl aminopeptidase 1) (PM25) [Arabidopsis Thaliana] (GB:P30184); similar to cytosol aminopeptidase
MSGI1_88151	NODE_35386_length_149_cov_8.939597	0	1.6	13.2	0.7	0	-4.2	-4.7	0	protein.degradation.ubiquitin.E3.SCF.FBOX	F-box family protein  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G39460.1); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G39490.1); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G39450.1); similar
MSGI1_65941	NODE_35390_length_192_cov_4.583333	0	0	24	11.1	0	0	-5.6	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_31408	NODE_3541_length_356_cov_133.561798	36.3	75.8	31.2	47.1	1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_107698	NODE_35423_length_125_cov_6.072000	0	0	2.6	12.7	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_72863	NODE_35448_length_176_cov_7.619318	3.4	3.8	16.4	2.1	0	-3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_84236	NODE_35466_length_155_cov_8.464516	0.2	0.3	6.8	16.3	0	0	0	-5.8	not assigned.unknown	not assigned.unknown
MSGI1_69690	NODE_35468_length_183_cov_5.732240	0.7	0.8	2.2	16.6	0	2.9	0	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_47272	NODE_35485_length_258_cov_5.461240	18.3	1.2	12.6	1.6	-3.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_43463	NODE_35488_length_276_cov_14.275362	0	0	57.4	36.4	0	0	-6.8	-6.2	not assigned.unknown	not assigned.unknown
MSGI1_13617	NODE_355_length_641_cov_34.379097	5.5	24.1	10.6	21.1	2.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_58411	NODE_35507_length_214_cov_10.285047	12.3	13.4	0.9	0.4	0	0	3.8	5.1	not assigned.unknown	not assigned.unknown
MSGI1_72862	NODE_35526_length_176_cov_5.619318	0	0	4.1	15.3	0	0	0	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_24006	NODE_35531_length_440_cov_19.690908	0.7	15	3.8	6.4	4.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_95464	NODE_35546_length_139_cov_4.863309	3.6	1.3	14.1	1	0	-3.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_51076	NODE_35548_length_241_cov_7.224066	1.6	1.8	16.5	3.1	0	0	-3.4	0	DNA.unspecified	"transporter  similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT4G39170.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE85412.1);"
MSGI1_51076	NODE_35548_length_241_cov_7.224066	1.6	1.8	16.5	3.1	0	0	-3.4	0	transport.misc	"transporter  similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT4G39170.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE85412.1);"
MSGI1_104787	NODE_35573_length_128_cov_8.695312	0.2	0	17.5	0.8	0	-4.5	-6.5	0	not assigned.unknown	not assigned.unknown
MSGI1_4901	NODE_356_length_1070_cov_65.696259	56	26.3	0	0	-1.1	0	6.8	5.7	not assigned.unknown	not assigned.unknown
MSGI1_58410	NODE_3564_length_214_cov_12.574766	10.7	15.7	26.1	41.9	0	0	0	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_60300	NODE_35663_length_208_cov_9.230769	0.3	1.2	21.5	9.1	0	0	-6.2	0	not assigned.unknown	not assigned.unknown
MSGI1_107696	NODE_35665_length_125_cov_15.112000	1.5	2.7	18.3	1.1	0	-4.1	-3.6	0	stress.abiotic.drought/salt	"HYP1 (HYPOTHETICAL PROTEIN 1) unknown protein, has cDNAs and ESTs associated to it similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69450.1); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os12g"
MSGI1_73318	NODE_3567_length_175_cov_41.622856	8.2	13.7	82.1	8.5	0	-3.3	-3.3	0	"metal handling.binding, chelation and storage"	"ATFER1 (ferretin 1); ferric iron binding Encodes  a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Identical to Ferritin-1, chloroplast"
MSGI1_102971	NODE_35674_length_130_cov_6.253846	1.2	0.9	15	0.8	0	-4.2	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_96274	NODE_35698_length_138_cov_9.268116	0.5	0.1	22.7	0	0	-5.5	-5.5	0	not assigned.unknown	not assigned.unknown
MSGI1_9986	NODE_3573_length_762_cov_21.245407	5.9	27	8.6	13.9	2.2	0	0	0	transport.ABC transporters and multidrug resistance systems	"ABC transporter family protein  Identical to Multidrug resistance protein 13 (P-glycoprotein 15) (MDR13) [Arabidopsis Thaliana] (GB:Q9LHD1); similar to PGP18 (P-GLYCOPROTEIN 18), ATPase, coupled to transmembrane movement of substances [Arabidopsis thalia"
MSGI1_91687	NODE_35730_length_144_cov_7.166667	1.9	1.6	15.4	2.2	0	0	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_105740	NODE_35733_length_127_cov_12.535433	4	7.4	24.3	15.5	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_58409	NODE_35734_length_214_cov_16.378504	4.8	6.4	20.1	3.3	0	-2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_91686	NODE_35758_length_144_cov_4.486111	0	0.1	7.6	14.9	0	0	0	-7.2	protein.aa activation.isoleucine-tRNA ligase	"isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putative  similar to OVA2 (OVULE ABORTION 2), ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT5G49030.1); similar to hypothetical protein LOC334393 [Danio rerio] (GB:NP_956"
MSGI1_101213	NODE_35761_length_132_cov_14.575758	17.6	2.7	2.8	0.5	-2.7	0	2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_61258	NODE_35783_length_205_cov_4.736585	3.6	1.6	7.8	13.9	0	0	0	-3.1	lipid metabolism.lipid degradation.beta-oxidation.acyl CoA DH	"ACX1 (ACYL-COA OXIDASE 1) Encodes a medium to long-chain acyl-CoA oxidase. Catalyzing the first step of fatty acid beta-oxidation. Gene expression is induced by wounding, drought stress, abscisic acid, and jasmonate. Identical to Acyl-coenzyme A oxidase"
MSGI1_30931	NODE_35797_length_360_cov_4.188889	0	0	4.7	10.7	0	0	0	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_121226	NODE_35799_length_61_cov_35.803280	15.1	14.9	39.5	42.4	0	0	0	-1.5	minor CHO metabolism.myo-inositol.InsP Synthases	"inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative  Identical to Probable inositol-3-phosphate synthase isozyme 3 (EC 5.5.1.4) (Myo- inositol-1-phosphate synthase 3) (MI-1-P synthase 3) (IPS"
MSGI1_53958	NODE_3581_length_230_cov_26.934782	0	0	27.2	65.8	0	1.3	-5.8	-7	not assigned.unknown	not assigned.unknown
MSGI1_81184	NODE_35838_length_160_cov_7.631250	0	0	8.4	18.4	0	0	0	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_84887	NODE_35841_length_154_cov_9.103896	0	0	19.7	1.2	0	-4	-5.3	0	not assigned.unknown	not assigned.unknown
MSGI1_84232	NODE_35848_length_155_cov_9.419354	0.7	1.2	21.4	12.3	0	0	-4.9	0	DNA.synthesis/chromatin structure	tRNA-splicing endonuclease positive effector-related  similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:AT1G65780.1); similar to putative helicase [Oryza sativa (japonica cultivar-group)] (GB:AAM76346.1); similar
MSGI1_38233	NODE_3588_length_305_cov_8.032787	0.4	0.3	8.1	14.7	0	0	0	-5.6	protein.degradation.ubiquitin.E3.DCX	DDB1A (UV-damaged DNA-binding protein 1A); DNA binding Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chro
MSGI1_38233	NODE_3588_length_305_cov_8.032787	0.4	0.3	8.1	14.7	0	0	0	-5.6	stress.abiotic.light	DDB1A (UV-damaged DNA-binding protein 1A); DNA binding Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chro
MSGI1_96272	NODE_35882_length_138_cov_8.963768	2.5	3.9	18.1	14.6	0	0	-2.9	0	signalling.G-proteins	"guanine nucleotide exchange family protein  similar to EDA10 (embryo sac development arrest 10), guanyl-nucleotide exchange factor [Arabidopsis thaliana] (TAIR:AT1G01960.1); similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TA"
MSGI1_68797	NODE_35908_length_185_cov_36.513512	35.7	39.8	1.2	0.8	0	0	4.9	5.6	not assigned.unknown	not assigned.unknown
MSGI1_23183	NODE_35916_length_454_cov_23.286345	31	0.6	5.9	0.5	-5.7	0	2.4	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_23183	NODE_35916_length_454_cov_23.286345	31	0.6	5.9	0.5	-5.7	0	2.4	0	misc.GDSL-motif lipase	ATLTL1/LTL1 (LI-TOLERANT LIPASE 1); carboxylic ester hydrolase  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G33370.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipo
MSGI1_30015	NODE_35922_length_369_cov_16.650406	21.5	2.2	6.3	1.9	-3.3	0	0	0	protein.synthesis.mito/plastid ribosomal protein.mitochondrial	"ribosomal protein S12 mitochondrial family protein  similar to ribosomal protein S12 [Brassica napus] (GB:BAA02857.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding,"
MSGI1_21358	NODE_3593_length_479_cov_43.534447	1.6	5.6	84.8	3.1	0	-4.8	-5.7	0	amino acid metabolism.degradation.aspartate family.lysine	LKR (SACCHAROPINE DEHYDROGENASE)  Identical to Alpha-aminoadipic semialdehyde synthase (LKR/SDH) (cAt-LKR/SDH) [Includes: Lysine ketoglutarate reductase (EC 1.5.1.8) (LKR); Saccharopine dehydrogenase (EC 1.5.1.9) (SDH) (cAt-SDH)] (LKR/SDH) [Arabidopsis T
MSGI1_111096	NODE_35935_length_121_cov_62.446281	26.8	5.5	1.9	0.8	-2.3	0	3.8	0	major CHO metabolism.degradation.starch.starch cleavage	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_111096	NODE_35935_length_121_cov_62.446281	26.8	5.5	1.9	0.8	-2.3	0	3.8	0	"misc.gluco-, galacto- and mannosidases"	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_121223	NODE_35954_length_61_cov_29.114754	16	8.3	0	0	0	0	5	0	not assigned.unknown	not assigned.unknown
MSGI1_61965	NODE_35967_length_203_cov_22.354679	37.5	15.3	7.9	9.9	0	0	2.2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L32 (RPL32A)  Identical to 60S ribosomal protein L32-1 (RPL32A) [Arabidopsis Thaliana] (GB:P49211;GB:Q8LC86;GB:Q9SVW1); similar to 60S ribosomal protein L32 (RPL32B) [Arabidopsis thaliana] (TAIR:AT5G46430.2); similar to ly200 protein
MSGI1_109701	NODE_35968_length_123_cov_46.138210	12.6	44.8	10.6	4.9	1.8	0	0	3.2	not assigned.unknown	not assigned.unknown
MSGI1_82357	NODE_35969_length_158_cov_7.575949	0	0	16.4	2.1	0	-3	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_112772	NODE_35971_length_107_cov_228.420563	91.8	72.5	38.6	115.7	0	1.6	1.2	0	amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoglycerate dehydrogenase	"PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE); phosphoglycerate dehydrogenase encodes a 3-Phosphoglycerate dehydrogenase Identical to D-3-phosphoglycerate dehydrogenase, chloroplast precursor (EC 1.1.1.95) (3-PGDH) [Arabidopsis Thaliana] (GB:O04130); similar t"
MSGI1_15713	NODE_35973_length_585_cov_14.353847	11.8	18.4	59.6	13.1	0	-2.2	-2.3	0	hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate synthase	"ACS6 (1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6) encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family Identical to 1-aminocyclopropane-1-carbo"
MSGI1_84885	NODE_35992_length_154_cov_26.487013	15.9	9.3	1.8	0.5	0	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_50424	NODE_36005_length_244_cov_9.959017	17.5	15.5	3.5	22.3	0	2.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_31406	NODE_3601_length_356_cov_12.730337	0.7	1.3	40.9	23.3	0	0	-5.9	-4.2	cell wall	"protein kinase, putative  similar to kinase [Arabidopsis thaliana] (TAIR:AT1G67000.1); similar to serine/threonine protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G66930.1); similar to serine/threonine protein kinase, putative [Arabidopsis"
MSGI1_31406	NODE_3601_length_356_cov_12.730337	0.7	1.3	40.9	23.3	0	0	-5.9	-4.2	signalling.receptor kinases.wheat LRK10 like	"protein kinase, putative  similar to kinase [Arabidopsis thaliana] (TAIR:AT1G67000.1); similar to serine/threonine protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G66930.1); similar to serine/threonine protein kinase, putative [Arabidopsis"
MSGI1_103887	NODE_36014_length_129_cov_5.790698	0	0	12.3	9.5	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_97026	NODE_36016_length_137_cov_7.145986	0.5	1.8	12	0.3	0	-5.3	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_68796	NODE_3602_length_185_cov_14.778378	0	0	9.7	31.3	0	1.7	0	-6	not assigned.unknown	not assigned.unknown
MSGI1_112153	NODE_36023_length_112_cov_26.794643	55.8	27.3	21.7	17.2	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_121220	NODE_36027_length_61_cov_39.688526	22.8	11.1	0	0.4	0	0	5.5	4.8	"misc.gluco-, galacto- and mannosidases"	"glycosyl hydrolase family 9 protein  Identical to Endoglucanase 10 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 10) [Arabidopsis Thaliana] (GB:Q8LCP6;GB:Q9LR07); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT1G19940.1);"
MSGI1_121220	NODE_36027_length_61_cov_39.688526	22.8	11.1	0	0.4	0	0	5.5	4.8	"cell wall.degradation.cellulases and beta -1,4-glucanases"	"glycosyl hydrolase family 9 protein  Identical to Endoglucanase 10 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 10) [Arabidopsis Thaliana] (GB:Q8LCP6;GB:Q9LR07); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT1G19940.1);"
MSGI1_75203	NODE_36030_length_171_cov_19.251463	2.9	11	8.2	46.3	0	2.5	0	-2.1	hormone metabolism.gibberelin.synthesis-degradation.ent-kaurenoic acid hydroxylase/oxygenase	KAO2 (ENT-KAURENOIC ACID HYDROXYLASE 2); oxygen binding ent-kaurenoic acid hydroxylase (KAO2) Identical to Ent-kaurenoic acid oxidase 2 (EC 1.14.13.79) (AtKAO2) (Cytochrome P450 88A4) (KAO2) [Arabidopsis Thaliana] (GB:Q9C5Y2;GB:Q9ZV72); similar to CYP88A
MSGI1_59958	NODE_36030_length_209_cov_19.645933	8.1	35.6	15.5	7.2	2.1	0	0	2.3	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	"lipase class 3 family protein  similar to DAD1 (DEFECTIVE ANTHER DEHISCENCE 1), triacylglycerol lipase [Arabidopsis thaliana] (TAIR:AT2G44810.1); similar to lipase-like protein [Oryza sativa] (GB:CAC39051.1); similar to Os02g0653900 [Oryza sativa (japoni"
MSGI1_38711	NODE_36035_length_302_cov_7.543046	6.2	21.7	29.6	1.5	0	-4.3	-2.3	3.9	not assigned.unknown	not assigned.unknown
MSGI1_102043	NODE_36037_length_131_cov_5.480916	0	0	12.9	12.3	0	0	-4.7	-4.6	"misc.oxidases - copper, flavone etc."	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G14160.1); similar to oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed [Oryza sativa ("
MSGI1_68006	NODE_36040_length_187_cov_4.743316	4.4	6.2	42.4	19.6	0	0	-3.3	0	hormone metabolism.ethylene.synthesis-degradation	"2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G06650.2); similar to unknown ["
MSGI1_68006	NODE_36040_length_187_cov_4.743316	4.4	6.2	42.4	19.6	0	0	-3.3	0	redox.ascorbate and glutathione	"2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G06650.2); similar to unknown ["
MSGI1_104782	NODE_36046_length_128_cov_11.945312	11.4	20.3	0.8	2.7	0	0	0	2.9	not assigned.unknown	not assigned.unknown
MSGI1_74704	NODE_36054_length_172_cov_7.953488	5.8	4.2	19	3	0	-2.7	0	0	protein.postranslational modification	protein phosphatase 2C family protein / PP2C family protein  similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT5G66080.1); similar to protein phosphatase 2C homolog [Mesembryanthemum crystallinum] (GB:AA
MSGI1_41375	NODE_36070_length_287_cov_45.790939	53	18.7	64	10.1	-1.5	-2.7	0	0	"metal handling.binding, chelation and storage"	copper-binding family protein  similar to ATFP3 (Arabidopsis thaliana farnesylated protein 3) [Arabidopsis thaliana] (TAIR:AT5G63530.2); similar to PPAK motif; Heavy metal transport/detoxification protein [Medicago truncatula] (GB:ABE84491.1); contains In
MSGI1_117846	NODE_36074_length_64_cov_45.046875	98.1	82.5	4.7	12.5	0	0	4.4	2.7	not assigned.unknown	not assigned.unknown
MSGI1_30107	NODE_36086_length_368_cov_69.070656	30.1	29.3	12	38.4	0	1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_74703	NODE_36087_length_172_cov_13.238372	17.3	36.9	9	6.7	0	0	0	2.5	signalling.MAP kinases	"ATMKK9 (Arabidopsis thaliana MAP kinase kinase 9); kinase member of MAP Kinase Kinase similar to ATMKK7 (MAP KINASE KINASE7), kinase [Arabidopsis thaliana] (TAIR:AT1G18350.1); similar to double MYC-tagged mitogen activated protein kinase kinase 9 [synthe"
MSGI1_47470	NODE_36087_length_257_cov_7.147860	2.6	6	17.8	8.7	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_67572	NODE_36094_length_188_cov_32.260639	34.8	32.5	0	0	0	0	6.1	6	not assigned.unknown	not assigned.unknown
MSGI1_121217	NODE_36115_length_61_cov_51.540985	38.8	83.8	28.3	62.2	1.1	1.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_45362	NODE_36129_length_267_cov_15.209738	19.1	31.5	0	0	0	0	5.3	6	not assigned.unknown	not assigned.unknown
MSGI1_83587	NODE_3614_length_156_cov_62.948719	21.5	34.2	5.4	11.8	0	0	0	1.5	secondary metabolism.N misc.cyanogenic glycosides	CYN (CYANASE); cyanate hydratase cyanase Identical to Cyanate hydratase (EC 4.2.1.104) (Cyanase) (Cyanate lyase) (Cyanate hydrolase) (CYN) [Arabidopsis Thaliana] (GB:O22683); similar to Os10g0471300 [Oryza sativa (japonica cultivar-group)] (GB:NP_0010648
MSGI1_94680	NODE_36145_length_140_cov_59.414288	51.3	41	13.8	31.9	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_57834	NODE_36151_length_216_cov_8.796296	3	3.7	21.7	12.5	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_115755	NODE_36155_length_81_cov_38.407406	22.5	0.6	1.7	0.4	-5.2	0	3.7	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G29660.1); similar to GDSL-lipase 1 [Capsicum annuum] (GB:AAZ23955.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; ("
MSGI1_71931	NODE_3616_length_178_cov_34.421349	1.6	7	19.1	3.4	0	-2.5	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_83586	NODE_36172_length_156_cov_9.243589	5	16.4	17.5	2.8	0	-2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_110692	NODE_36178_length_122_cov_8.442623	0	0	6.9	17.2	0	0	0	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_58744	NODE_36184_length_213_cov_7.694836	7.4	8.1	16.5	29.4	0	0	0	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_66726	NODE_36185_length_190_cov_4.900000	1	0.6	6.4	12.6	0	0	0	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_23461	NODE_36188_length_450_cov_14.304444	19.4	40.7	66.4	12.2	0	-2.4	-1.8	1.7	not assigned.unknown	not assigned.unknown
MSGI1_88146	NODE_36232_length_149_cov_13.973154	6	7.1	28.9	9.6	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_113492	NODE_36234_length_102_cov_8.362745	8.3	16.9	2.1	2.2	0	0	0	2.9	not assigned.unknown	not assigned.unknown
MSGI1_97824	NODE_36235_length_136_cov_6.242647	3	3.4	19.7	11.7	0	0	-2.7	0	lipid metabolism.Phospholipid synthesis.1-acylglycerol-3-phosphate O-acyltransferase	"ATS1 (ACYLTRANSFERASE 1) Encodes a chloroplast glycerol-3-phosphate acyltransferase.Involved in the biosynthesis of chloroplast phosphatidylglycerol. Identical to Glycerol-3-phosphate acyltransferase, chloroplast precursor (EC 2.3.1.15) (GPAT) (ATS1) [Ar"
MSGI1_70578	NODE_36238_length_181_cov_15.038674	7.2	34.5	57.3	36.6	2.3	0	-3	0	cell wall.cell wall proteins.LRR	leucine-rich repeat family protein  similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT2G15880.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT
MSGI1_10480	NODE_36244_length_743_cov_15.484522	12.8	16.5	0.2	0.1	0	0	6	7.4	not assigned.unknown	not assigned.unknown
MSGI1_63394	NODE_36247_length_199_cov_7.532663	0	0	14.7	17.7	0	0	-4.9	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_80620	NODE_36261_length_161_cov_12.968945	2.8	0	36.8	0.5	0	-6.2	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_115655	NODE_36265_length_82_cov_52.121952	40.1	23.2	9.5	7	0	0	2.1	0	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	catalytic/ coenzyme binding  similar to putative NADH:ubiquinone oxidoreductase 39 kDa subunit precursor [Chlamydomonas reinhardtii] (GB:AAQ55458.1); similar to Os02g0816800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048516.1); contains InterPro d
MSGI1_113815	NODE_36267_length_99_cov_33.757576	43.9	57.3	47.2	108.2	0	1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_109694	NODE_36300_length_123_cov_7.260163	1.4	1.4	19	1.6	0	-3.6	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_39086	NODE_36305_length_300_cov_13.623333	10.9	37.2	15.3	23.5	1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_29132	NODE_36316_length_378_cov_9.875662	7	27.5	1.9	4.9	2	0	0	2.5	cell wall.degradation.pectate lyases and polygalacturonases	pectate lyase family protein  Identical to Probable pectate lyase 5 precursor (EC 4.2.2.2) [Arabidopsis Thaliana] (GB:Q9FXD8;GB:Q8L8V9;GB:Q8W116); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G24780.1); similar to pectate lyase
MSGI1_70157	NODE_36325_length_182_cov_5.175824	0	0	5.6	13	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_121210	NODE_36337_length_61_cov_27.262295	16.2	13.8	0	0	0	0	5	4.8	cell wall.precursor synthesis.RHM	"RHM1/ROL1 (RHAMNOSE BIOSYNTHESIS1); UDP-glucose 4,6-dehydratase/ catalytic Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha.  The de"
MSGI1_114036	NODE_36339_length_97_cov_40.546391	8.5	7.9	4.9	21.3	0	2.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_107683	NODE_36341_length_125_cov_16.936001	13.9	16.7	0	0	0	0	4.8	5.1	not assigned.unknown	not assigned.unknown
MSGI1_80619	NODE_36342_length_161_cov_5.608696	0.9	1.3	12.7	3.8	0	0	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_93153	NODE_36367_length_142_cov_11.105634	0	0.1	61.8	23.5	0	-1.4	-6.9	-7.9	not assigned.unknown	not assigned.unknown
MSGI1_95455	NODE_36373_length_139_cov_30.474821	17.8	11.6	61.5	34.4	0	0	-1.8	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_109693	NODE_3638_length_123_cov_6.495935	0	0.2	12.4	10.3	0	0	-4.6	-5.7	not assigned.unknown	not assigned.unknown
MSGI1_56919	NODE_36388_length_219_cov_19.000000	21.2	6.6	0	0	0	0	5.4	0	not assigned.unknown	not assigned.unknown
MSGI1_45361	NODE_36389_length_267_cov_11.977528	6.3	28.4	12.6	25	2.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_90205	NODE_3639_length_146_cov_10.006849	0.8	0.6	6.8	13.1	0	0	0	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_52661	NODE_364_length_235_cov_66.919151	14.2	48.4	25.9	21.5	1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_112929	NODE_36400_length_106_cov_10.943397	9.8	20.5	0	0.3	0	0	0	6.1	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G17680.1); similar to TIR-NBS type disease resistance protein [Populus trichocarpa] (GB:ABF81459"
MSGI1_33019	NODE_36412_length_342_cov_8.663743	12.9	0.1	2.8	0.1	-7	0	0	0	hormone metabolism.gibberelin.induced-regulated-responsive-activated	gibberellin-regulated family protein  similar to gibberellin-regulated family protein [Arabidopsis thaliana] (TAIR:AT5G59845.1); similar to snakin-1 [Solanum tuberosum] (GB:CAC44032.1); contains InterPro domain Gibberellin regulated protein; (InterPro:IPR
MSGI1_33019	NODE_36412_length_342_cov_8.663743	12.9	0.1	2.8	0.1	-7	0	0	0	cell wall	gibberellin-regulated family protein  similar to gibberellin-regulated family protein [Arabidopsis thaliana] (TAIR:AT5G59845.1); similar to snakin-1 [Solanum tuberosum] (GB:CAC44032.1); contains InterPro domain Gibberellin regulated protein; (InterPro:IPR
MSGI1_121204	NODE_36421_length_61_cov_52.344261	34.3	26.6	11.2	20.6	0	0	1.6	0	signalling.calcium	"CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5); calcium- and calmodulin-dependent protein kinase/ kinase calmodulin-domain protein kinase CDPK isoform 5 (CPK5) similar to CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6), anion channel/ calcium- and calmodulin-depend"
MSGI1_62289	NODE_36426_length_202_cov_18.792080	22	38.7	0	0.8	0	0	5.5	5.6	not assigned.unknown	not assigned.unknown
MSGI1_101203	NODE_36441_length_132_cov_7.053030	2.2	1.4	16.6	1.6	0	-3.4	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_121202	NODE_36445_length_61_cov_56.114754	34.7	16.2	4.4	4.5	0	0	3	0	not assigned.unknown	not assigned.unknown
MSGI1_106696	NODE_36457_length_126_cov_7.087302	0	0	16.4	13.9	0	0	-5	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_30406	NODE_36479_length_365_cov_4.693151	2.7	6.4	17.4	6.1	0	0	-2.7	0	signalling.calcium	"CPK9 (CALMODULIN-DOMAIN PROTEIN KINASE 9); calcium- and calmodulin-dependent protein kinase/ kinase calmodulin-domain protein kinase CDPK isoform 9 (CPK9) similar to CPK33 (calcium-dependent protein kinase 33), calcium- and calmodulin-dependent protein k"
MSGI1_108687	NODE_36487_length_124_cov_7.403226	0	0	15	10.8	0	0	-4.9	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_37448	NODE_36499_length_310_cov_83.219353	29.9	9.2	12.1	6.2	-1.7	0	0	0	secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA reductase	"HMG1 (3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE) Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in l"
MSGI1_70577	NODE_36503_length_181_cov_21.386740	9.6	11.9	0.4	0.6	0	0	0	4.3	not assigned.unknown	not assigned.unknown
MSGI1_121199	NODE_36506_length_61_cov_37.000000	22.6	13.3	0	0	0	0	5.5	4.7	protein.synthesis.misc ribososomal protein	60S ribosomal protein L10A (RPL10aB)  Identical to 60S ribosomal protein L10a-2 (RPL10AB) [Arabidopsis Thaliana] (GB:P59230;GB:P53029;GB:Q9C5M4;GB:Q9SLF8); similar to 60S ribosomal protein L10A (RPL10aA) [Arabidopsis thaliana] (TAIR:AT1G08360.1); similar
MSGI1_75196	NODE_36515_length_171_cov_7.140351	0.6	1.3	19.3	12.3	0	0	-5	0	protein.aa activation.lysine-tRNA ligase	"lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative  Identical to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) [Arabidopsis Thaliana] (GB:Q9ZPI1); similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Ar"
MSGI1_44670	NODE_36532_length_270_cov_6.351852	3	28.6	0.1	1.1	3.3	0	0	4.7	signalling.calcium	"polcalcin, putative / calcium-binding pollen allergen, putative  similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G18210.2); similar to calcium-binding pollen allergen [Arachis hypogaea] (GB:AAZ20284.1); contains InterPro doma"
MSGI1_44670	NODE_36532_length_270_cov_6.351852	3	28.6	0.1	1.1	3.3	0	0	4.7	stress.abiotic.unspecified	"polcalcin, putative / calcium-binding pollen allergen, putative  similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G18210.2); similar to calcium-binding pollen allergen [Arachis hypogaea] (GB:AAZ20284.1); contains InterPro doma"
MSGI1_121194	NODE_36558_length_61_cov_52.311474	52.2	23.7	8.8	28.8	-1.1	1.7	2.6	0	protein.folding	"ATP binding / protein binding / unfolded protein binding  similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT1G26230.1); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G13470.1); similar to CPN60B (CHAPERONIN 60 BETA), ATP bi"
MSGI1_83582	NODE_3656_length_156_cov_170.846161	25.7	66.7	12.3	73.3	1.4	2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_38231	NODE_36560_length_305_cov_13.354098	14.2	12.9	0	0	0	0	4.8	4.7	not assigned.unknown	not assigned.unknown
MSGI1_121193	NODE_36565_length_61_cov_14.311476	0	0	10.8	17.7	0	0	0	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_71929	NODE_36571_length_178_cov_19.724720	22.8	11.3	51.5	6.7	0	-2.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_96265	NODE_36575_length_138_cov_10.173913	1.8	4	15.1	4.3	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_121191	NODE_36582_length_61_cov_37.442623	23.3	12	6	11.9	0	0	2	0	stress.abiotic.drought/salt	"STT3B (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE B); oligosaccharyl transferase Encodes homolog of yeast STT3, a subunit of oligosaccharyltransferase. similar to STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A), oligosaccharyl transferase [Ara"
MSGI1_71047	NODE_36590_length_180_cov_5.783333	5.3	8.5	23	5.8	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_44505	NODE_36595_length_271_cov_10.560885	13.1	1.1	1.3	0.5	-3.6	0	3.3	0	"misc.oxidases - copper, flavone etc."	flavin-containing monooxygenase family protein / FMO family protein  similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT5G07800.1); similar to putative flavin-containing monooxygenase FMO-1 [Oryz
MSGI1_121190	NODE_36597_length_61_cov_13.950820	0.6	0.2	14.4	41.6	0	1.5	-4.6	-7.7	not assigned.unknown	not assigned.unknown
MSGI1_77766	NODE_36598_length_166_cov_5.987952	0	0.2	12.6	5.8	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_30529	NODE_3660_length_364_cov_14.206044	8.9	23.4	3.3	18.8	0	2.5	0	0	cell wall	"BRL2 (BRI1-LIKE 2); ATP binding / protein serine/threonine kinase Similar to BRI, brassinosteroid receptor protein. Identical to Serine/threonine-protein kinase BRI1-like 2 precursor (EC 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2) (Protein V"
MSGI1_30529	NODE_3660_length_364_cov_14.206044	8.9	23.4	3.3	18.8	0	2.5	0	0	hormone metabolism.brassinosteroid.signal transduction.BRI	"BRL2 (BRI1-LIKE 2); ATP binding / protein serine/threonine kinase Similar to BRI, brassinosteroid receptor protein. Identical to Serine/threonine-protein kinase BRI1-like 2 precursor (EC 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2) (Protein V"
MSGI1_81743	NODE_36601_length_159_cov_38.553459	43.6	155.9	61.4	34	1.8	0	0	2.2	not assigned.unknown	not assigned.unknown
MSGI1_88144	NODE_36604_length_149_cov_8.268456	2.1	3.3	30.6	17.9	0	0	-3.9	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_86828	NODE_36610_length_151_cov_34.013245	18	6	0	0.2	0	0	5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_86827	NODE_36621_length_151_cov_9.821192	1.5	11	0.9	0.2	0	0	0	5.8	not assigned.unknown	not assigned.unknown
MSGI1_75194	NODE_36622_length_171_cov_6.415205	2.8	0.9	15.5	0.2	0	-6.3	0	0	nucleotide metabolism.degradation	cytidine/deoxycytidylate deaminase family protein  similar to cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana] (TAIR:AT3G05300.1); similar to deoxycytidine deaminase [Brassica oleracea] (GB:AAL67435.1); contains InterPro domain CM
MSGI1_84224	NODE_36638_length_155_cov_19.941935	9.9	21.1	39.2	18.8	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_75718	NODE_36645_length_170_cov_7.205883	1	1	18.5	8.3	0	0	-4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_101200	NODE_36647_length_132_cov_6.613636	5.9	10.9	27.7	5.5	0	-2.3	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_81742	NODE_36648_length_159_cov_7.509434	0	0	9.7	11	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_111095	NODE_36654_length_121_cov_21.801653	19.1	10.1	0	0	0	0	5.3	0	protein.folding	"ATP binding / protein binding / unfolded protein binding  similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT1G26230.1); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G13470.1); similar to CPN60B (CHAPERONIN 60 BETA), ATP bi"
MSGI1_60299	NODE_36666_length_208_cov_6.096154	1.1	2.4	13.9	1.1	0	-3.7	-3.7	0	cell.organisation	transducin family protein / WD-40 repeat family protein  similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G18950.1); similar to WD-40 repeat family protein [Musa acuminata] (GB:ABF70017.1); contains InterP
MSGI1_74701	NODE_36677_length_172_cov_17.633720	17.9	18.9	0	0	0	0	5.2	5.2	not assigned.unknown	not assigned.unknown
MSGI1_40124	NODE_36686_length_294_cov_11.731293	14.2	13.1	1.6	2.3	0	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_19229	NODE_36693_length_519_cov_15.807322	1	15.7	8.3	8.7	4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_31967	NODE_36695_length_351_cov_49.943020	29.7	26.6	6.9	4.4	0	0	2.1	2.6	not assigned.unknown	not assigned.unknown
MSGI1_65564	NODE_36701_length_193_cov_28.709845	17.2	16.1	0	0	0	0	5.1	5	not assigned.unknown	not assigned.unknown
MSGI1_121182	NODE_36701_length_61_cov_10.721312	0	0	5.6	11.9	0	0	0	-4.6	DNA.synthesis/chromatin structure	ATCEN2 (CENTRIN2); calcium ion binding  similar to calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G37010.2); similar to Caltractin (Centrin) (GB:P41210); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-bi
MSGI1_63392	NODE_36710_length_199_cov_5.854271	0	0	12.9	0	0	-4.7	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_71046	NODE_36712_length_180_cov_22.355556	16	15.1	0.2	0.6	0	0	6.3	4.7	secondary metabolism.simple phenols	"LAC5 (laccase 5); copper ion binding / oxidoreductase putative laccase, a member of laccase family of genes (17 members in Arabidopsis). similar to LAC3 (laccase 3), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G30210.1); similar t"
MSGI1_105729	NODE_36713_length_127_cov_5.866142	1.3	1.5	15.8	1.3	0	-3.6	-3.6	0	protein.degradation.metalloprotease	"S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly"
MSGI1_107678	NODE_36717_length_125_cov_6.896000	0.2	0.5	13.8	10.8	0	0	-6.1	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_55567	NODE_36718_length_224_cov_8.687500	5	8.1	606.7	12.8	0	-5.6	-6.9	0	not assigned.unknown	not assigned.unknown
MSGI1_80012	NODE_36720_length_162_cov_8.234568	0	0	8.3	35.3	0	2.1	0	-6.1	not assigned.unknown	not assigned.unknown
MSGI1_121181	NODE_36722_length_61_cov_65.590164	37.3	30.7	0	0.4	0	0	6.2	6.3	not assigned.unknown	not assigned.unknown
MSGI1_102960	NODE_36737_length_130_cov_7.776923	3	7.3	18.8	4.5	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_115963	NODE_36745_length_79_cov_85.544304	54.8	43.8	20.9	35.2	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_97020	NODE_36750_length_137_cov_5.817518	2.2	16	11.3	13.9	2.9	0	0	0	transport.ABC transporters and multidrug resistance systems	"PGP18 (P-GLYCOPROTEIN 18); ATPase, coupled to transmembrane movement of substances  Identical to Putative multidrug resistance protein 20 (P-glycoprotein 18) (MDR20) [Arabidopsis Thaliana] (GB:Q9LSJ5); similar to ABC transporter family protein [Arabidops"
MSGI1_115487	NODE_36750_length_83_cov_45.686749	9.7	12.5	37.9	7	0	-2.4	-2	0	protein.postranslational modification	"protein phosphatase 2C, putative / PP2C, putative  similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT1G07430.1); similar to protein phpsphatase 2C (PP2C) [Fagus sylvatica] (GB:CAB90633.1); contains InterPro domai"
MSGI1_110688	NODE_36751_length_122_cov_12.131147	0	0	23.9	9	0	0	-5.6	0	not assigned.unknown	not assigned.unknown
MSGI1_64094	NODE_36753_length_197_cov_108.421318	127.8	3.4	0	0	-5.2	0	8	0	cell wall.degradation.pectate lyases and polygalacturonases	"PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding polygalacturonase inhibiting protein 1 (PGIP1) mRNA, Identical to Polygalacturonase inhibitor 1 precursor (Polygalacturonase-inhibiting protein) (PGIP-1) (PGIP1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_95451	NODE_36767_length_139_cov_5.741007	0	0	11.2	7	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_42928	NODE_36772_length_279_cov_9.598566	8.5	12.7	35.4	9.4	0	-1.9	-2.1	0	signalling.calcium	"IQD24 (IQ-domain 24); calmodulin binding  similar to IQD23 (IQ-domain 23), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G62070.1); similar to IQ calmodulin-binding re (GB:ABE86306.1); contains InterPro domain IQ calmodulin-binding region; (InterPro"
MSGI1_87492	NODE_36776_length_150_cov_28.186666	7.8	14.1	133.1	10.7	0	-3.6	-4.1	0	"metal handling.binding, chelation and storage"	"ATFER1 (ferretin 1); ferric iron binding Encodes  a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Identical to Ferritin-1, chloroplast"
MSGI1_59327	NODE_36777_length_211_cov_90.834122	55.1	16.3	21.4	15.7	-1.8	0	1.4	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome  Identical to 50S ribosomal protein L6, chloroplast precursor (RPL6) [Arabidopsis Thaliana] (GB:O23049); similar to ribosomal protein L6 family protein [Arabidopsis thaliana] (TAIR:AT2G1"
MSGI1_71427	NODE_36781_length_179_cov_6.268157	1.4	1	14.8	1.3	0	-3.5	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_70153	NODE_36785_length_182_cov_10.159341	13.5	10.9	42.9	38.5	0	0	-1.7	-1.8	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_70153	NODE_36785_length_182_cov_10.159341	13.5	10.9	42.9	38.5	0	0	-1.7	-1.8	cell wall	glycosyl hydrolase family 79 N-terminal domain-containing protein  Identical to Heparanase-like protein 3 precursor (EC 3.2.-.-) [Arabidopsis Thaliana] (GB:Q9FZP1;GB:O82604;GB:O82605); similar to glycosyl hydrolase family 79 N-terminal domain-containing
MSGI1_121176	NODE_36798_length_61_cov_19.737705	14.4	16.4	0	0	0	0	4.8	5	not assigned.unknown	not assigned.unknown
MSGI1_104772	NODE_36803_length_128_cov_5.500000	0.6	4.6	14.9	1.6	0	-3.2	-4.6	0	RNA.regulation of transcription.NAC domain transcription factor family	NAM (Arabidopsis NAC domain containing protein 18); transcription factor Transcription factor with a NAC domain.  Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo. Identical to NAC domain-cont
MSGI1_104772	NODE_36803_length_128_cov_5.500000	0.6	4.6	14.9	1.6	0	-3.2	-4.6	0	development.unspecified	NAM (Arabidopsis NAC domain containing protein 18); transcription factor Transcription factor with a NAC domain.  Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo. Identical to NAC domain-cont
MSGI1_101199	NODE_36813_length_132_cov_28.143940	12.4	7.9	43	27.5	0	0	-1.8	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_108681	NODE_36814_length_124_cov_9.379032	12.3	17.5	0.3	0	0	0	5.4	5.1	not assigned.unknown	not assigned.unknown
MSGI1_111094	NODE_36815_length_121_cov_28.677687	26.1	80.9	0	0	1.6	0	5.7	7.3	TCA / org. transformation.other organic acid transformaitons.malic	"ATNADP-ME1 (NADP-MALIC ENZYME 1); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to"
MSGI1_55841	NODE_3682_length_223_cov_73.448433	53.6	45.8	106.7	214.4	0	1	0	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_107675	NODE_36832_length_125_cov_6.992000	0.9	0.9	5.5	13.2	0	0	0	-3.9	not assigned.unknown	not assigned.unknown
MSGI1_113814	NODE_36836_length_99_cov_18.696970	12.4	6.5	47.8	11.3	0	-2.1	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_121172	NODE_36839_length_61_cov_26.311476	0	0	34.7	3.7	0	-3.2	-6.1	0	not assigned.unknown	not assigned.unknown
MSGI1_99441	NODE_36857_length_134_cov_6.208955	0.2	0.4	11.5	6.4	0	0	-5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_105724	NODE_36858_length_127_cov_10.732284	4.2	10.1	23.5	21.1	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_113813	NODE_36861_length_99_cov_54.232323	43.9	47.8	20.7	107.6	0	2.4	0	-1.2	"misc.gluco-, galacto- and mannosidases"	glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G18070.1); similar to beta-mannosidase enzyme [Lycopersicon esculentum] (GB:AAL37714.1); similar to beta-mannosidase 3 [Oncidium Gower Ram
MSGI1_88841	NODE_36875_length_148_cov_24.506756	25.5	26	4.7	13.4	0	0	2.4	0	misc.cytochrome P450	"CYP72A14 (cytochrome P450, family 72, subfamily A, polypeptide 14); oxygen binding putative cytochrome P450 similar to CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14690.1); similar t"
MSGI1_23391	NODE_36876_length_451_cov_10.880266	8	25.3	16.5	3.8	0	0	0	2.7	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-"
MSGI1_23391	NODE_36876_length_451_cov_10.880266	8	25.3	16.5	3.8	0	0	0	2.7	hormone metabolism.ethylene.signal transduction	"AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-"
MSGI1_26260	NODE_3688_length_411_cov_31.905109	135.5	78	53.6	78.6	0	0	1.3	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L14 (RPL14A)  Identical to 60S ribosomal protein L14-1 (RPL14A) [Arabidopsis Thaliana] (GB:Q9SIM4); similar to 60S ribosomal protein L14 (RPL14B) [Arabidopsis thaliana] (TAIR:AT4G27090.1); similar to glycoprotein-like protein [Solanu
MSGI1_34528	NODE_36892_length_331_cov_12.166163	1.4	4.7	32.4	0.6	0	-5.8	-4.5	0	protein.postranslational modification	"CIPK5 (CBL-INTERACTING PROTEIN KINASE 5); kinase Encodes CBL-interacting protein kinase 5 (CIPK5). similar to CIPK25 (CBL-INTERACTING PROTEIN KINASE 25), kinase [Arabidopsis thaliana] (TAIR:AT5G25110.1); similar to CBL-interacting protein kinase 6 [Popul"
MSGI1_121165	NODE_36901_length_61_cov_19.672131	17.2	5.8	73.4	31.3	0	-1.2	-2.1	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_73315	NODE_36905_length_175_cov_6.365714	0.7	2.3	13.6	1.5	0	0	-4.3	0	not assigned.unknown	not assigned.unknown
MSGI1_114247	NODE_36910_length_95_cov_5.757895	0	0	18.1	10	0	0	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_73801	NODE_36912_length_174_cov_38.942528	80.4	21.7	18	25.2	-1.9	0	2.2	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_73801	NODE_36912_length_174_cov_38.942528	80.4	21.7	18	25.2	-1.9	0	2.2	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_108677	NODE_3692_length_124_cov_24.548388	0.9	0.2	60.1	1.4	0	-5.4	-6.1	0	not assigned.unknown	not assigned.unknown
MSGI1_73800	NODE_36926_length_174_cov_6.551724	0	0	12.4	7.1	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_34231	NODE_36931_length_333_cov_7.981982	7.1	6.6	22.1	4.7	0	-2.2	0	0	amino acid metabolism.degradation.branched-chain group.leucine	"MCCA (3-methylcrotonyl-CoA carboxylase 1) MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. Identical to Methylcrotonoyl-"
MSGI1_10437	NODE_36937_length_745_cov_12.551678	8.7	36.5	31.4	56.2	2.1	0	-1.9	0	major CHO metabolism.degradation.starch.starch cleavage	"AMY2/ATAMY2 (ALPHA-AMYLASE-LIKE 2); alpha-amylase alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic doma"
MSGI1_105723	NODE_36943_length_127_cov_9.118111	2.2	0.8	16.8	5.6	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_75712	NODE_36943_length_170_cov_14.047059	1.3	16.7	5.7	19.1	3.7	0	0	0	signalling.receptor kinases.leucine rich repeat XII	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G47090.1); similar to EFR (EF-TU RECEPTOR), ATP binding / kinase/ protein serine/threonine k"
MSGI1_18830	NODE_36947_length_525_cov_9.535238	12.5	17.5	0	0	0	0	4.6	5.1	stress.abiotic.heat	HSP70 (heat shock protein 70); ATP binding  similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G
MSGI1_21766	NODE_36950_length_473_cov_10.061311	16.4	3.4	2.1	0.7	0	0	3	0	secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase	"CHS (CHALCONE SYNTHASE); naringenin-chalcone synthase Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids.  Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of"
MSGI1_88141	NODE_36951_length_149_cov_4.677852	0	0	10	10.8	0	0	0	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_57495	NODE_3696_length_217_cov_53.626728	0.9	3.5	76.1	4.1	0	-4.2	-6.4	0	development.unspecified	dormancy/auxin associated family protein  similar to dormancy/auxin associated protein-related [Arabidopsis thaliana] (TAIR:AT1G54070.1); similar to Dormancyauxin associated [Medicago truncatula] (GB:ABE80617.1); contains InterPro domain Dormancyauxin ass
MSGI1_92398	NODE_36965_length_143_cov_17.993008	11.9	27.7	1.4	2	0	0	0	3.8	not assigned.unknown	not assigned.unknown
MSGI1_45129	NODE_36967_length_268_cov_11.287313	8.4	28	11.9	23	1.7	0	0	0	transport.ABC transporters and multidrug resistance systems	"PDR8/PEN3 (PLEIOTROPIC DRUG RESISTANCE8); ATPase, coupled to transmembrane movement of substances ATP binding cassette transporter. Localized to the plasma membrane in uninfected cells. In infected leaves, the protein concentrated at  infection sites. Co"
MSGI1_99438	NODE_36968_length_134_cov_10.253732	23.6	10	2.7	3.6	0	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_31276	NODE_36975_length_357_cov_16.778711	23.5	29.1	0.6	1.7	0	0	5.3	4.1	not assigned.unknown	not assigned.unknown
MSGI1_87489	NODE_36990_length_150_cov_6.313334	2	5	10.8	0.2	0	-5.8	0	0	DNA.repair	heavy-metal-associated domain-containing protein  similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G23760.1); similar to Unknown (protein for MGC:78286) [Mus musculus] (GB:AAH71252.1); contains InterPro domain He
MSGI1_48814	NODE_36991_length_251_cov_4.613546	0	0	11	13.5	0	0	0	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_112151	NODE_37001_length_112_cov_80.812500	57.3	138.3	100.4	84.4	1.3	0	0	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	"BLH1 (BLH1); DNA binding / transcription factor BEL1-like homeodomain 1 (BLH1) similar to BLH4 (BLH4), DNA binding [Arabidopsis thaliana] (TAIR:AT2G23760.3); similar to BEL1-like homeodomain transcription factor [Trifolium pratense] (GB:BAE71188.1); cont"
MSGI1_52374	NODE_37005_length_236_cov_38.724575	3.1	16.3	53.6	11.1	0	-2.3	-4.1	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. simi"
MSGI1_12580	NODE_37007_length_671_cov_12.096870	8.3	19.8	71.2	13.4	0	-2.4	-3.1	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 1); transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Loss of function mutant has abnormally shaped leaves and stems. Identical to Homeobox-leucine zipper protein ATHB-12
MSGI1_67997	NODE_37008_length_187_cov_13.636364	23	21.1	4.5	8.9	0	0	2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_106688	NODE_37009_length_126_cov_14.182540	20	3.7	12.2	3.5	-2.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_63697	NODE_3701_length_198_cov_20.792929	8.5	17.6	0.9	3.1	0	0	0	2.5	not assigned.unknown	not assigned.unknown
MSGI1_63035	NODE_37010_length_200_cov_11.395000	0	0	16.7	13	0	0	-5.1	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_91673	NODE_37036_length_144_cov_28.097221	15.1	10.1	0.5	1	0	0	4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_69680	NODE_3705_length_183_cov_8.901639	2.2	2.3	20.9	10.5	0	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_87487	NODE_37059_length_150_cov_7.300000	1.1	1.8	1.4	15.7	0	3.5	0	-3.1	not assigned.unknown	not assigned.unknown
MSGI1_121160	NODE_37063_length_61_cov_50.081966	11.9	23	47.5	28	0	0	-2	0	cell wall	"LAC10 (laccase 10); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_121160	NODE_37063_length_61_cov_50.081966	11.9	23	47.5	28	0	0	-2	0	secondary metabolism.simple phenols	"LAC10 (laccase 10); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_121159	NODE_37065_length_61_cov_58.573769	33.2	52.7	128.9	116.5	0	0	-2	-1.1	not assigned.unknown	not assigned.unknown
MSGI1_121158	NODE_37072_length_61_cov_28.934425	11.2	17.1	0	0	0	0	4.5	5.1	cell.organisation	ATK1 (ARABIDOPSIS THALIANA KINESIN 1); microtubule motor Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis. Identical to Kinesin-1 (Kinesin-like prot
MSGI1_67566	NODE_37075_length_188_cov_18.617022	23.6	1.8	4.5	0	-3.7	0	2.4	0	secondary metabolism.phenylpropanoids	transferase family protein  similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT3G50300.1); similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase [Malus x domestica] (GB:AAV50009.1); contains InterPro domain Transferase; (InterPro
MSGI1_105719	NODE_37077_length_127_cov_11.409449	5.8	8	28.7	9.1	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_54782	NODE_37086_length_227_cov_53.229076	37.2	14	83.8	15.8	-1.4	-2.4	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_82347	NODE_37090_length_158_cov_5.569620	0	0.1	11.3	8.7	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_68790	NODE_37090_length_185_cov_13.545946	5.3	11	54.4	15.1	0	-1.8	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_95443	NODE_37098_length_139_cov_9.309353	5.3	1.2	18.7	0	0	-5.2	0	0	misc.acid and other phosphatases	"phosphoric monoester hydrolase  similar to phosphoric monoester hydrolase [Arabidopsis thaliana] (TAIR:AT1G73010.1); similar to putative phosphatase [Solanum lycopersicum] (GB:CAD30864.1); contains InterPro domain HAD-superfamily hydrolase subfamily IB,"
MSGI1_73798	NODE_37103_length_174_cov_5.850574	0.2	0.3	13.5	10	0	0	-6.1	0	not assigned.unknown	not assigned.unknown
MSGI1_117211	NODE_37107_length_69_cov_20.550724	12.3	2.9	46.8	1.9	0	-4.6	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_105718	NODE_37108_length_127_cov_48.000000	50	26.7	16	29.6	0	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_58398	NODE_37109_length_214_cov_5.584112	8.8	13.2	0	0.2	0	0	0	6	cell wall	disease resistance family protein  similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT1G71400.1); similar to Hcr2-5D [Lycopersicon esculentum] (GB:AAC78596.1); contains InterPro domain Leucine-rich repeat; (I
MSGI1_58398	NODE_37109_length_214_cov_5.584112	8.8	13.2	0	0.2	0	0	0	6	stress.biotic	disease resistance family protein  similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT1G71400.1); similar to Hcr2-5D [Lycopersicon esculentum] (GB:AAC78596.1); contains InterPro domain Leucine-rich repeat; (I
MSGI1_86121	NODE_37114_length_152_cov_13.032895	12.4	68.6	11.2	28.5	2.5	0	0	1.3	not assigned.unknown	not assigned.unknown
MSGI1_96257	NODE_37119_length_138_cov_36.282608	11.9	16.5	0.2	0.3	0	0	5.9	5.8	not assigned.unknown	not assigned.unknown
MSGI1_117066	NODE_37119_length_70_cov_61.085712	41.5	165.5	62.1	34.5	2	0	0	2.3	RNA.regulation of transcription.C3H zinc finger family	CZF1/ZFAR1; transcription factor  similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G55980.1); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR0021
MSGI1_37787	NODE_3712_length_308_cov_62.172077	16.1	34.4	90.3	21.5	0	-2.1	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_81735	NODE_37126_length_159_cov_50.415092	30.7	5.4	3.8	3	-2.5	0	3	0	cell.organisation	"ACT3 (ACTIN 3); structural constituent of cytoskeleton Member of the Actin gene family. Expressed in mature pollen. Identical to Actin-1/3 (ACT3) [Arabidopsis Thaliana] (GB:P10671;GB:P53493;GB:Q9M351); similar to ACT11 (ACTIN-11), structural constituent"
MSGI1_77764	NODE_37133_length_166_cov_16.891565	0	0	32.6	22.6	0	0	-6	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_50421	NODE_37160_length_244_cov_12.036885	16.2	5.5	26	5.7	0	-2.2	0	0	cell wall.modification	"ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical"
MSGI1_36149	NODE_37160_length_319_cov_12.739812	17.4	12.2	1.9	12.9	0	0	3.2	0	secondary metabolism.flavonoids.flavonols	"UGT73C6 (UDP-glucosyl transferase 73C6); UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups The At2g36790 gene encodes a UDP-glucose:flavonol-3-O-glycoside-7-O-glucosyltransferase (UGT73C6)attaching a glucosyl res"
MSGI1_22113	NODE_37162_length_468_cov_11.726496	16.3	0.7	3.3	0.5	-4.5	0	0	0	"lipid metabolism.'exotics' (steroids, squalene etc)"	sulfotransferase family protein  similar to sulfotransferase family protein [Arabidopsis thaliana] (TAIR:AT5G07010.1); similar to Sulfotransferase [Medicago truncatula] (GB:ABE88692.1); contains InterPro domain Sulfotransferase; (InterPro:IPR000863)
MSGI1_49691	NODE_37176_length_247_cov_6.283401	0.5	1	17.1	1.8	0	-3.2	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_109683	NODE_37178_length_123_cov_4.308943	3.1	4.6	33	15.3	0	0	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_54781	NODE_37181_length_227_cov_7.603524	0	0	17.2	10.6	0	0	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_79399	NODE_37186_length_163_cov_10.944785	15.3	66.6	54.1	6.1	2.1	-3.1	-1.8	3.4	not assigned.unknown	not assigned.unknown
MSGI1_109682	NODE_37191_length_123_cov_9.365853	2.3	2.6	16.1	5.7	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_81166	NODE_37203_length_160_cov_7.131250	1.3	3.8	15.4	4.8	0	0	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_58091	NODE_3722_length_215_cov_92.548836	36.5	41.5	116.1	82.4	0	0	-1.7	-1	not assigned.unknown	not assigned.unknown
MSGI1_76204	NODE_37224_length_169_cov_27.017752	27.9	14.9	36.6	2.8	0	-3.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_112035	NODE_37228_length_113_cov_23.159292	11.7	21.4	0	0	0	0	4.5	5.4	not assigned.unknown	not assigned.unknown
MSGI1_72857	NODE_37248_length_176_cov_5.107955	2.3	2.7	15.4	18.2	0	0	0	-2.8	not assigned.unknown	not assigned.unknown
MSGI1_61250	NODE_37250_length_205_cov_43.287804	41.9	13.7	15.9	15.6	-1.6	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_61611	NODE_37265_length_204_cov_4.338235	0.9	1.7	12.3	4.2	0	0	-3.8	0	protein.postranslational modification	protein phosphatase 2C family protein / PP2C family protein  similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT1G03590.1); similar to Protein phosphatase 2C-like [Medicago truncatula] (GB:ABE77622.1); co
MSGI1_39415	NODE_37268_length_298_cov_18.956375	3.5	19.3	7.8	4.5	2.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_121142	NODE_37270_length_61_cov_11.721312	0	0	11.2	10.7	0	0	-4.5	-4.4	stress.abiotic.heat	ATJ3 (Arabidopsis thaliana DnaJ homologue 3) homologous to the co-chaperon DNAJ protein from E coli Identical to Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) (ATJ3) [Arabidopsis Thaliana] (GB:Q94AW8;GB:O22663;GB:Q42530); similar to ATJ2 (Arabidopsis thaliana
MSGI1_121141	NODE_37270_length_61_cov_21.491804	12.1	20.5	0.4	0	0	0	4.9	5.4	not assigned.unknown	not assigned.unknown
MSGI1_76203	NODE_37272_length_169_cov_4.520710	0	0	1.5	11.4	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_41374	NODE_37274_length_287_cov_12.010453	16	1.4	2.9	1.4	-3.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_121139	NODE_37275_length_61_cov_16.770493	11.9	13.7	0	0	0	0	4.6	4.8	redox.ascorbate and glutathione	"ACYB-1 (Arabidopsis cytochrome b561 -1); carbon-monoxide oxygenase Encodes for cytochrome b561. similar to ACYB-2 (Arabidopsis cytochrome b561 -2), carbon-monoxide oxygenase [Arabidopsis thaliana] (TAIR:AT4G25570.1); similar to cytochrome b561 [Citrullus"
MSGI1_63696	NODE_37276_length_198_cov_6.267677	9.3	1.3	15.2	0.4	0	-5.2	0	0	misc.UDP glucosyl and glucoronyl transferases	"UDP-glucoronosyl/UDP-glucosyl transferase family protein The At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring. similar to IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE), UDP-"
MSGI1_121138	NODE_37278_length_61_cov_8.540983	53.2	28.8	5.2	7.8	0	0	3.4	1.9	not assigned.unknown	not assigned.unknown
MSGI1_121137	NODE_37286_length_61_cov_64.557381	29.7	25	0	0	0	0	5.9	5.6	signalling.light	PHOT1 (phototropin 1); kinase Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 me
MSGI1_121137	NODE_37286_length_61_cov_64.557381	29.7	25	0	0	0	0	5.9	5.6	protein.postranslational modification	PHOT1 (phototropin 1); kinase Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 me
MSGI1_107668	NODE_3729_length_125_cov_177.167999	239.2	169.9	18.3	55.8	0	1.6	3.7	1.6	not assigned.unknown	not assigned.unknown
MSGI1_107667	NODE_37294_length_125_cov_10.808000	6.3	29.4	14.9	28.3	2.2	0	0	0	hormone metabolism.gibberelin.synthesis-degradation.ent-kaurenoic acid hydroxylase/oxygenase	"CYP88A3 (ENT-KAURENOIC ACID HYDROXYLASE 1); oxygen binding Encodes an ent-kaurenoic acid hydroxylase, a  member of the CYP88A cytochrome p450 family. Identical to Ent-kaurenoic acid oxidase 1 (EC 1.14.13.79) (AtKAO1) (Cytochrome P450 88A3) (KAO1) [Arabid"
MSGI1_78284	NODE_37299_length_165_cov_8.224242	0.2	0.1	19.6	4.9	0	0	-6.6	0	stress.biotic	disease resistance family protein / LRR family protein  similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT1G71390.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana]
MSGI1_104764	NODE_37301_length_128_cov_13.984375	9.2	12.2	26.2	6.9	0	-1.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_46667	NODE_37301_length_261_cov_8.363985	10.8	0.5	1.8	0.5	-4.4	0	0	0	misc.cytochrome P450	"CYP86A7 (cytochrome P450, family 86, subfamily A, polypeptide 7); oxygen binding Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers. similar to CYP86A4 (cytochrome P450, family 86, su"
MSGI1_95442	NODE_37305_length_139_cov_5.158273	0	0	5.3	12	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_76202	NODE_37311_length_169_cov_10.284023	10.7	7.6	0.2	0	0	0	5.7	0	not assigned.unknown	not assigned.unknown
MSGI1_67996	NODE_37313_length_187_cov_9.342246	10.4	0.3	1	0.2	-5.1	0	0	0	RNA.regulation of transcription.bZIP transcription factor family	bZIP transcription factor family protein  similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G42380.2); similar to bZIP transcription factor bZIP50 [Glycine max] (GB:ABI34644.1); contains InterPro domain Eukaryotic transc
MSGI1_71422	NODE_37325_length_179_cov_7.458101	0	0	103.2	18.4	0	-2.5	-7.7	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_108668	NODE_37328_length_124_cov_5.266129	0	0	7.1	10.8	0	0	0	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_49265	NODE_37328_length_249_cov_20.184738	27	45.1	5.6	7.3	0	0	2.3	2.6	misc.glutathione S transferases	ATGSTU7 (GLUTATHIONE S-TRANSFERASE 25); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by
MSGI1_102950	NODE_37339_length_130_cov_5.161539	1.7	16.3	9.4	16.3	3.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_121131	NODE_37347_length_61_cov_32.278690	20.9	16.2	0	0	0	0	5.4	5	not assigned.unknown	not assigned.unknown
MSGI1_79397	NODE_37360_length_163_cov_6.453988	0.9	0.8	16.1	12.1	0	0	-4.2	-3.9	not assigned.unknown	not assigned.unknown
MSGI1_98595	NODE_37370_length_135_cov_12.711111	30.7	7	13.9	7.2	-2.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_27412	NODE_37371_length_397_cov_9.027708	8.4	11.5	0.1	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_15236	NODE_37373_length_597_cov_16.998325	24.3	1.7	0.9	0.1	-3.8	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_101184	NODE_37375_length_132_cov_4.553030	0	0.1	17.1	0	0	-5.1	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_121128	NODE_37386_length_61_cov_53.508198	4.7	21	6.4	10.7	2.2	0	0	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"raffinose synthase family protein / seed imbibition protein-related  similar to ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G55740.1); similar to alkaline alpha galactosidas"
MSGI1_76730	NODE_3739_length_168_cov_11.166667	0	0	26.8	4.4	0	-2.6	-5.7	0	not assigned.unknown	not assigned.unknown
MSGI1_35034	NODE_37394_length_327_cov_14.131498	20	0.3	2.9	0	-6.1	0	2.8	0	secondary metabolism.flavonoids.dihydroflavonols	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G10500.1); similar to H0303A11-B0406H05.3 [Oryza sativa (indica cultivar-group)] (GB:CAH67943.1); contains"
MSGI1_35034	NODE_37394_length_327_cov_14.131498	20	0.3	2.9	0	-6.1	0	2.8	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_97806	NODE_37408_length_136_cov_4.955883	0.1	0.2	10.8	1.8	0	0	-6.8	0	not assigned.unknown	not assigned.unknown
MSGI1_100274	NODE_37418_length_133_cov_6.812030	12.8	3.8	22.8	2.3	0	-3.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_93139	NODE_37419_length_142_cov_11.190141	5.3	3.6	2.2	14.8	0	2.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_46008	NODE_3742_length_264_cov_7.431818	24.4	7.9	8.9	26.6	0	0	0	-1.8	amino acid metabolism.degradation.aspartate family.threonine	lactoylglutathione lyase family protein / glyoxalase I family protein  similar to lactoylglutathione lyase family protein / glyoxalase I family protein [Arabidopsis thaliana] (TAIR:AT1G80160.1); similar to Glyoxalase/bleomycin resistance protein/dioxygena
MSGI1_46008	NODE_3742_length_264_cov_7.431818	24.4	7.9	8.9	26.6	0	0	0	-1.8	Biodegradation of Xenobiotics.lactoylglutathione lyase	lactoylglutathione lyase family protein / glyoxalase I family protein  similar to lactoylglutathione lyase family protein / glyoxalase I family protein [Arabidopsis thaliana] (TAIR:AT1G80160.1); similar to Glyoxalase/bleomycin resistance protein/dioxygena
MSGI1_53949	NODE_37430_length_230_cov_12.830435	15.4	13.6	2.2	3.8	0	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_70568	NODE_37431_length_181_cov_30.762430	35.3	7.6	29.2	11.6	-2.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_65930	NODE_37441_length_192_cov_8.432292	7.3	8.3	25.3	6.3	0	-2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_71925	NODE_37447_length_178_cov_8.252809	4.6	4.6	16.7	23.8	0	0	0	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_90941	NODE_37453_length_145_cov_5.931035	0	0	10.1	12.9	0	0	0	-4.7	signalling.receptor kinases.Catharanthus roseus-like RLK1	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39000.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G28680.1); similar to protein kinase family protein [Arabidopsis t
MSGI1_90940	NODE_37462_length_145_cov_6.793103	0	0	11.8	10.7	0	0	-4.6	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_81163	NODE_37467_length_160_cov_19.687500	18.1	84.2	78.3	58.4	2.2	0	-2.1	0	RNA.regulation of transcription.GRAS transcription factor family	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_81163	NODE_37467_length_160_cov_19.687500	18.1	84.2	78.3	58.4	2.2	0	-2.1	0	development.unspecified	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_97011	NODE_3748_length_137_cov_70.277374	1.6	3.1	43.7	2.3	0	-4.2	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_32756	NODE_37494_length_344_cov_39.226746	30.3	18.3	9.8	8.4	0	0	1.6	0	cell wall	"RKL1 (Receptor-like kinase 1); ATP binding / kinase/ protein serine/threonine kinase Arabidopsis thaliana receptor-like protein kinase (RKL1) gene similar to RLK902 (receptor-like kinase 902), ATP binding / kinase/ protein serine/threonine kinase [Arabid"
MSGI1_32756	NODE_37494_length_344_cov_39.226746	30.3	18.3	9.8	8.4	0	0	1.6	0	signalling.receptor kinases.leucine rich repeat III	"RKL1 (Receptor-like kinase 1); ATP binding / kinase/ protein serine/threonine kinase Arabidopsis thaliana receptor-like protein kinase (RKL1) gene similar to RLK902 (receptor-like kinase 902), ATP binding / kinase/ protein serine/threonine kinase [Arabid"
MSGI1_24444	NODE_375_length_434_cov_90.110596	37.4	64.2	20	48.5	0	1.3	0	0	cell wall.cell wall proteins.AGPs	FLA12 (fasciclin-like arabinogalactan-protein 12)  Identical to Fasciclin-like arabinogalactan protein 12 precursor (FLA12) [Arabidopsis Thaliana] (GB:Q8LEE9;GB:Q94EG7;GB:Q9FKJ8); similar to FLA11 (fasciclin-like arabinogalactan-protein 11) [Arabidopsis t
MSGI1_115962	NODE_37510_length_79_cov_6.784810	2.6	7.8	30.3	5	0	-2.6	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_80603	NODE_37512_length_161_cov_7.298137	7.7	28	15.8	22.2	1.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_110673	NODE_37522_length_122_cov_43.467213	32	13.6	10.1	39.4	0	2	1.7	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_121118	NODE_37537_length_61_cov_7.934426	0.2	0	16.8	8.6	0	0	-6.4	0	not assigned.unknown	not assigned.unknown
MSGI1_107658	NODE_37541_length_125_cov_9.304000	7.1	1.1	3.1	19.7	0	2.7	0	-4.2	secondary metabolism.phenylpropanoids.lignin biosynthesis.CCoAOMT	"caffeoyl-CoA 3-O-methyltransferase, putative  Identical to Probable caffeoyl-CoA O-methyltransferase At4g26220 (EC 2.1.1.104) (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) [Arabidopsis Thaliana] (GB:Q9C5D7;GB:Q8LBF3;GB:Q9STR2); similar to"
MSGI1_116917	NODE_37547_length_71_cov_11.746479	1.4	2.7	22.5	25.1	0	0	-4	-3.2	not assigned.unknown	not assigned.unknown
MSGI1_90938	NODE_37549_length_145_cov_8.165517	2	1.5	18.9	0.2	0	-6.6	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_102947	NODE_3756_length_130_cov_116.346153	9.2	10	138.6	23.9	0	-2.5	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_2994	NODE_3756_length_1334_cov_114.697899	7.5	36	10.1	18.3	2.3	0	0	0	protein.degradation.ubiquitin.E2	"PHO2/UBC24 (PHOSPHATE 2); ubiquitin-protein ligase Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. similar to UBC23 (ubiquitin-conjugating enzyme"
MSGI1_18510	NODE_37562_length_530_cov_18.228302	1.8	24.7	2.7	10.7	3.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_9206	NODE_37571_length_795_cov_30.109434	23.5	42.7	20.7	16.5	0	0	0	1.4	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G33170.1); similar to receptor-like protein kinase [Nicotiana tabacum] (GB:BAC07504.2); cont"
MSGI1_9206	NODE_37571_length_795_cov_30.109434	23.5	42.7	20.7	16.5	0	0	0	1.4	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G33170.1); similar to receptor-like protein kinase [Nicotiana tabacum] (GB:BAC07504.2); cont"
MSGI1_115652	NODE_37582_length_82_cov_8.048780	0	0	11.6	4.2	0	0	-4.5	0	transport.peptides and oligopeptides	"YSL4 (YELLOW STRIPE LIKE 4); oligopeptide transporter Arabidopsis thaliana metal-nicotianamine transporter YSL4 similar to YSL1 (YELLOW STRIPE LIKE 1), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT4G24120.1); similar to YSL6 (YELLOW STRIPE LIK"
MSGI1_26618	NODE_37588_length_406_cov_12.221675	11.6	12.6	0	0	0	0	4.5	4.7	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G24240.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsi"
MSGI1_16659	NODE_3759_length_564_cov_147.758865	99.6	50.1	24.6	32.5	0	0	2	0	protein.synthesis.misc ribososomal protein	"40S ribosomal protein S15 (RPS15D)  Identical to 40S ribosomal protein S15-4 (RPS15D) [Arabidopsis Thaliana] (GB:Q9FY64); Identical to 40S ribosomal protein S15-1 (RPS15A) [Arabidopsis Thaliana] (GB:Q08112); similar to RPS15 (RIBOSOMAL PROTEIN S15), stru"
MSGI1_102946	NODE_37594_length_130_cov_36.553844	27.9	16.7	7.6	14.2	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_114318	NODE_37603_length_94_cov_36.670212	20.3	19.1	1.6	5.2	0	0	3.7	0	stress.biotic	"ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19); ATPase, coupled to transmembrane movement of substances / auxin efflux transporter Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates"
MSGI1_114318	NODE_37603_length_94_cov_36.670212	20.3	19.1	1.6	5.2	0	0	3.7	0	transport.ABC transporters and multidrug resistance systems	"ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19); ATPase, coupled to transmembrane movement of substances / auxin efflux transporter Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates"
MSGI1_121111	NODE_37608_length_61_cov_35.639343	17.7	17.3	0	0.4	0	0	5.1	5.4	not assigned.unknown	not assigned.unknown
MSGI1_115961	NODE_37615_length_79_cov_40.189873	22.1	8.5	4.5	7.5	0	0	2.3	0	cell wall	glycosyl hydrolase family 3 protein  similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G62710.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G20940.1); similar to glycosyl hydrolase family
MSGI1_115961	NODE_37615_length_79_cov_40.189873	22.1	8.5	4.5	7.5	0	0	2.3	0	"cell wall.degradation.cellulases and beta -1,4-glucanases"	glycosyl hydrolase family 3 protein  similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G62710.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G20940.1); similar to glycosyl hydrolase family
MSGI1_106682	NODE_37627_length_126_cov_3.261905	2.3	1.9	22.6	6.7	0	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_112150	NODE_37641_length_112_cov_39.428570	34.7	10.3	24.5	15.7	-1.8	0	0	0	stress.abiotic.drought/salt	dehydration-responsive protein-related  similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G04430.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G14430.1); similar to dehydration-respo
MSGI1_71038	NODE_37648_length_180_cov_8.261111	0.3	5	21	1.5	0	-3.8	-6.1	0	RNA.regulation of transcription.NAC domain transcription factor family	"NAP (NAC-LIKE, ACTIVATED BY AP3/PI); transcription factor Encodes a member of the NAC transcription factor gene family.  It is expressed in floral primordia and upregulated by AP3 and PI.  Its expression is associated with leaf senescence. Identical to N"
MSGI1_71038	NODE_37648_length_180_cov_8.261111	0.3	5	21	1.5	0	-3.8	-6.1	0	development.unspecified	"NAP (NAC-LIKE, ACTIVATED BY AP3/PI); transcription factor Encodes a member of the NAC transcription factor gene family.  It is expressed in floral primordia and upregulated by AP3 and PI.  Its expression is associated with leaf senescence. Identical to N"
MSGI1_71038	NODE_37648_length_180_cov_8.261111	0.3	5	21	1.5	0	-3.8	-6.1	0	cell wall	"NAP (NAC-LIKE, ACTIVATED BY AP3/PI); transcription factor Encodes a member of the NAC transcription factor gene family.  It is expressed in floral primordia and upregulated by AP3 and PI.  Its expression is associated with leaf senescence. Identical to N"
MSGI1_71038	NODE_37648_length_180_cov_8.261111	0.3	5	21	1.5	0	-3.8	-6.1	0	cell wall	"NAP (NAC-LIKE, ACTIVATED BY AP3/PI); transcription factor Encodes a member of the NAC transcription factor gene family.  It is expressed in floral primordia and upregulated by AP3 and PI.  Its expression is associated with leaf senescence. Identical to N"
MSGI1_92391	NODE_37650_length_143_cov_16.874126	11.2	12.7	35.5	14.8	0	0	-1.7	0	protein.targeting.secretory pathway.vacuole	VSR-2 (Vacuolar sorting receptor 2); calcium ion binding / peptidase encodes a vacuolar sorting receptor Identical to Vacuolar sorting receptor 4 precursor (AtVSR4) (Epidermal growth factor receptor-like protein 2b) (AtELP2b) (BP80-like protein a) (AtBP8
MSGI1_54210	NODE_37662_length_229_cov_12.187773	81.3	8.3	24.6	7.4	-3.3	0	1.7	0	cell wall.modification	"EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4); hydrolase, acting on glycosyl bonds EXGT-A4, endoxyloglucan transferase, Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 5 precursor (EC 2.4.1.207) (At-XTH5) (XTH-5) (XTH5) [Arabidopsis Tha"
MSGI1_109679	NODE_37669_length_123_cov_5.634146	0.2	0.6	10.8	13.1	0	0	-5.8	-4.4	misc.cytochrome P450	"CYP89A5 (cytochrome P450, family 87, subfamily A, polypeptide 5); oxygen binding member of CYP89A similar to CYP89A6 (cytochrome P450, family 87, subfamily A, polypeptide 6), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G64940.1); similar to cytochrome"
MSGI1_67143	NODE_37669_length_189_cov_4.936508	0.2	0.7	8	12.8	0	0	0	-4.2	not assigned.unknown	not assigned.unknown
MSGI1_71417	NODE_37675_length_179_cov_18.715084	17.3	21.7	3	1.7	0	0	2.5	3.7	not assigned.unknown	not assigned.unknown
MSGI1_121105	NODE_37675_length_61_cov_18.967213	1.7	2.3	16.8	5.4	0	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_121102	NODE_37682_length_61_cov_28.540983	9.5	20.9	2	22.2	0	3.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_83567	NODE_37687_length_156_cov_10.153846	3	11.1	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_103849	NODE_3769_length_129_cov_6.558139	0.4	0.9	13.3	2.1	0	0	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_48576	NODE_37698_length_252_cov_16.853174	10.4	11	54.6	23.5	0	-1.2	-2.4	0	transport.peptides and oligopeptides	proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G54140.1); similar to Os06g0264500 [Oryza sativa (japonica cultivar-group)] (GB:NP_00105
MSGI1_62641	NODE_37702_length_201_cov_12.875622	13.9	1.3	0.2	0	-3.4	0	6.1	0	not assigned.unknown	not assigned.unknown
MSGI1_53947	NODE_37703_length_230_cov_8.560869	0.6	0.3	11.2	16.7	0	0	0	-5.8	cell wall	"protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23160.1); similar to CRK10 (CYSTEINE-RICH RLK10), kinase [Arabidopsis thaliana] (TAIR:AT4G23180.1); similar to CRK6 (CYSTEINE-RICH RLK 6), kinase [Ar"
MSGI1_53947	NODE_37703_length_230_cov_8.560869	0.6	0.3	11.2	16.7	0	0	0	-5.8	signalling.receptor kinases.DUF 26	"protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23160.1); similar to CRK10 (CYSTEINE-RICH RLK10), kinase [Arabidopsis thaliana] (TAIR:AT4G23180.1); similar to CRK6 (CYSTEINE-RICH RLK 6), kinase [Ar"
MSGI1_121100	NODE_37709_length_61_cov_56.573769	33.8	32	0.8	0	0	0	5.4	6	protein.postranslational modification	"calmodulin, putative  similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT1G62820.1); similar to putative serine/threonine kinase [Vitis vinifera] (GB:AAO49473.1); similar to EF hand family protein [Solanum demissum] (GB:AAT40490.1); contains"
MSGI1_108656	NODE_3771_length_124_cov_24.653225	4.2	11.5	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_38857	NODE_37712_length_301_cov_14.102990	1.1	16.3	1.9	6.8	3.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_121099	NODE_37716_length_61_cov_69.327866	40.5	41.9	11.2	11.9	0	0	1.9	1.8	transport.ABC transporters and multidrug resistance systems	ATGCN1 (Arabidopsis thaliana general control non-repressible 1) member of GCN subfamily similar to ATGCN4 (Arabidopsis thaliana general control non-repressible 4) [Arabidopsis thaliana] (TAIR:AT3G54540.1); similar to ABC transporter homolog [Populus nigr
MSGI1_102942	NODE_37719_length_130_cov_7.192307	7.3	6.3	33.3	8.4	0	-2	-2.2	0	"RNA.regulation of transcription.CCAAT box binding factor family, HAP5"	HAP5B (Heme activator protein (yeast) homolog 5B); DNA binding / transcription factor Encodes a protein with similarity to a subunit of  the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetativ
MSGI1_102017	NODE_37719_length_131_cov_42.267174	40.7	60.2	0.3	0	0	0	7.1	6.9	transporter.sugars	ATPLT5 (POLYOL TRANSPORTER 5); D-ribose transporter/ D-xylose transporter/ carbohydrate transporter/ galactose transporter/ glucose transporter/ glycerol transporter/ hydrogen:sugar symporter/ mannitol transporter/ monosaccharide transporter/ myo-inosito
MSGI1_34793	NODE_37729_length_329_cov_25.784195	239.2	23.5	42.5	75.4	-3.3	0	2.5	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_82973	NODE_37733_length_157_cov_7.178344	0.7	5.4	14.1	2.8	0	0	-4.3	0	cell wall	ATNAC2 (Arabidopsis thaliana NAC domain containing protein 2); transcription factor Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2. similar to NAM (Arabidopsis NAC d
MSGI1_82973	NODE_37733_length_157_cov_7.178344	0.7	5.4	14.1	2.8	0	0	-4.3	0	RNA.regulation of transcription.NAC domain transcription factor family	ATNAC2 (Arabidopsis thaliana NAC domain containing protein 2); transcription factor Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2. similar to NAM (Arabidopsis NAC d
MSGI1_64816	NODE_37737_length_195_cov_10.128205	11.4	3.2	65	15.1	0	-2.1	-2.5	0	transport.cyclic nucleotide or calcium regulated channels	"DND1 (DEFENSE NO DEATH 1); calmodulin binding / cation channel/ cyclic nucleotide binding / inward rectifier potassium channel 'defense, no death' gene (DND1) encodes a mutated cyclic nucleotide-gated cation channel; Same as CNGC2 (article ID 229): Cycli"
MSGI1_41039	NODE_37738_length_289_cov_8.944636	5.7	11.9	1	0.4	0	0	0	4.9	cell wall	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_41039	NODE_37738_length_289_cov_8.944636	5.7	11.9	1	0.4	0	0	0	4.9	stress.biotic	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_56910	NODE_37740_length_219_cov_32.853882	41.5	0.5	6.1	4.5	-6.4	0	2.8	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G29660.1); similar to GDSL-lipase 1 [Capsicum annuum] (GB:AAZ23955.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; ("
MSGI1_59321	NODE_37751_length_211_cov_13.928910	8.1	14	0.9	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_48162	NODE_37752_length_254_cov_42.031498	22.4	11.2	5.4	12.4	0	0	2.1	0	major CHO metabolism.synthesis.starch.AGPase	ADP-glucose pyrophosphorylase family protein  similar to ADP-glucose pyrophosphorylase family protein [Arabidopsis thaliana] (TAIR:AT2G04650.1); similar to putative GDP-mannose pyrophosphorylase [Linum usitatissimum] (GB:ABF48494.1); similar to Os03g02089
MSGI1_118149	NODE_37760_length_62_cov_59.870968	22.9	14.1	0.8	0	0	0	4.8	4.8	not assigned.unknown	not assigned.unknown
MSGI1_97009	NODE_37774_length_137_cov_7.116788	0.5	0.4	16.9	16.5	0	0	-5.1	-5.4	hormone metabolism.auxin.induced-regulated-responsive-activated	"aldo/keto reductase family protein  similar to ATB2, oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G60710.1); similar to aldo/keto reductase AKR [Manihot esculenta] (GB:AAX84672.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395)"
MSGI1_44666	NODE_37781_length_270_cov_12.725926	14.5	9.8	0.1	0	0	0	7.2	0	not assigned.unknown	not assigned.unknown
MSGI1_26914	NODE_37783_length_403_cov_189.583130	82.7	116.9	195.3	84.6	0	-1.2	-1.2	0	cell.organisation	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5); actin binding Encodes actin depolymerizing factor 5 (ADF5). Identical to Actin-depolymerizing factor 5 (ADF-5) (AtADF5) (ADF5) [Arabidopsis Thaliana] (GB:Q9ZNT3;GB:Q9SLE7); similar to actin binding [Arabidopsis thali
MSGI1_68396	NODE_37791_length_186_cov_8.532258	2.7	0.5	18.8	1.4	0	-3.7	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_45127	NODE_37792_length_268_cov_12.253732	9.1	13.5	0	0	0	0	0	4.8	amino acid metabolism.degradation.aspartate family.lysine	"enoyl-CoA hydratase/isomerase family protein  similar to CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1), 3-hydroxyisobutyryl-CoA hydrolase [Arabidopsis thaliana] (TAIR:AT5G65940.1); similar to Os01g0752200 [Oryza sativa (japonica cultivar-group)] (GB:NP_0"
MSGI1_45127	NODE_37792_length_268_cov_12.253732	9.1	13.5	0	0	0	0	0	4.8	amino acid metabolism.degradation.aromatic aa.tryptophan	"enoyl-CoA hydratase/isomerase family protein  similar to CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1), 3-hydroxyisobutyryl-CoA hydrolase [Arabidopsis thaliana] (TAIR:AT5G65940.1); similar to Os01g0752200 [Oryza sativa (japonica cultivar-group)] (GB:NP_0"
MSGI1_45127	NODE_37792_length_268_cov_12.253732	9.1	13.5	0	0	0	0	0	4.8	lipid metabolism.lipid degradation.beta-oxidation.enoyl CoA hydratase	"enoyl-CoA hydratase/isomerase family protein  similar to CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1), 3-hydroxyisobutyryl-CoA hydrolase [Arabidopsis thaliana] (TAIR:AT5G65940.1); similar to Os01g0752200 [Oryza sativa (japonica cultivar-group)] (GB:NP_0"
MSGI1_73790	NODE_37799_length_174_cov_27.287355	15.6	7.1	0.2	0.2	0	0	6.3	0	not assigned.unknown	not assigned.unknown
MSGI1_89522	NODE_37814_length_147_cov_6.006803	1.2	1.7	13.3	6.5	0	0	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_58084	NODE_37829_length_215_cov_4.967442	0	0	8.3	12.7	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_32657	NODE_37842_length_345_cov_10.507246	4.2	13.5	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_54779	NODE_37845_length_227_cov_6.643172	1.4	19.1	1.9	10.3	3.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_58734	NODE_37846_length_213_cov_2.976526	27.5	8.6	7.6	8.6	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_45797	NODE_3785_length_265_cov_16.150944	0	0	28.1	41	0	0	-5.8	-6.4	not assigned.unknown	not assigned.unknown
MSGI1_17679	NODE_37866_length_544_cov_18.630514	14.5	14.6	0.2	0	0	0	6.2	4.9	not assigned.unknown	not assigned.unknown
MSGI1_66715	NODE_37867_length_190_cov_7.578948	15.8	3.6	23.4	5.2	0	-2.2	0	0	protein.targeting	PSB29 (THYLAKOID FORMATION1) Chloroplast-localized Thylakoid formation1 gene product involved in vesicle-mediated formation of thylakoid membranes.  Thf1 antisense lines contain abnormal chloroplasts early in leaf development (chloroplasts have loosely s
MSGI1_103843	NODE_37874_length_129_cov_53.798450	29.9	27.4	108.6	86.5	0	0	-1.9	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_67140	NODE_37877_length_189_cov_86.910049	68.7	2.9	5	4.8	-4.6	0	3.8	0	stress.biotic	disease resistance-responsive family protein  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22900.1); similar to dirigent-like protein pDIR9 [Picea engelmannii x Picea glauca] (GB:ABD52120.1); contains InterPro domain Plant disease resistanc
MSGI1_87477	NODE_37878_length_150_cov_10.173333	6.5	8.9	34.6	12.6	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_72855	NODE_37882_length_176_cov_9.210227	11.7	0.7	0.4	0	-4.1	0	4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_117985	NODE_37893_length_63_cov_13.936508	2	2.8	17.3	0.4	0	-5.4	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_15627	NODE_37895_length_587_cov_7.993186	6.4	22.4	27.3	5.8	0	-2.2	-2.1	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY53 (WRKY DNA-binding protein 53); transcription factor member of WRKY Transcription Factor; Group III Identical to Probable WRKY transcription factor 53 (WRKY DNA-binding protein 53) (WRKY53) [Arabidopsis Thaliana] (GB:Q9SUP6); similar to WRKY41 (WRK
MSGI1_73305	NODE_3791_length_175_cov_51.057144	28.9	25.5	20.4	47.9	0	1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_114438	NODE_37912_length_93_cov_7.860215	0	0	7	12.7	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_59950	NODE_37915_length_209_cov_24.114832	5.7	16.9	33.3	23	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_96247	NODE_37924_length_138_cov_72.347824	33.2	9.8	25.9	92.5	-1.8	1.8	0	-3.2	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_116303	NODE_37934_length_76_cov_11.473684	0.2	0	14.2	26.8	0	0	-6.1	-5.7	protein.degradation	cytosol aminopeptidase  Identical to Leucine aminopeptidase 1 (EC 3.4.11.1) (LAP 1) (Leucyl aminopeptidase 1) (Proline aminopeptidase 1) (EC 3.4.11.5) (Prolyl aminopeptidase 1) (PM25) [Arabidopsis Thaliana] (GB:P30184); similar to cytosol aminopeptidase
MSGI1_90934	NODE_37941_length_145_cov_12.951724	13.6	2.2	0.2	0.5	0	0	6.1	0	not assigned.unknown	not assigned.unknown
MSGI1_109669	NODE_37946_length_123_cov_15.081301	28.9	4.9	19	12.8	-2.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_112034	NODE_37950_length_113_cov_44.486725	33	39.3	5	10.4	0	0	2.7	1.9	not assigned.unknown	not assigned.unknown
MSGI1_121082	NODE_37952_length_61_cov_11.590164	44.4	14.2	17.6	12.4	-1.6	0	1.3	0	cell wall.cellulose synthesis	"ATCSLA02 (Cellulose synthase-like A2); transferase, transferring glycosyl groups encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein similar to ATCSLA15 (Cellulose synthase-like A15), transferase, transfer"
MSGI1_114979	NODE_37959_length_88_cov_82.784088	42.2	53.1	0	0	0	0	6.4	6.7	not assigned.unknown	not assigned.unknown
MSGI1_104753	NODE_37961_length_128_cov_6.781250	7.7	9.7	31.9	4.8	0	-2.7	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_105701	NODE_37965_length_127_cov_5.393701	0.6	1.7	13.7	2.1	0	0	-4.5	0	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS11 (Arabidopsis thaliana trehalose phosphatase/synthase 11); transferase, transferring glycosyl groups Encodes an enzyme putatively involved in trehalose biosynthesis.  The protein has a trehalose synthase (TPS)-like domain that may or may not be ac"
MSGI1_35170	NODE_3797_length_326_cov_83.404907	93.7	43.6	159.8	41.9	-1.1	-1.9	0	0	cell wall	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_35170	NODE_3797_length_326_cov_83.404907	93.7	43.6	159.8	41.9	-1.1	-1.9	0	0	protein.degradation.subtilases	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_102010	NODE_38000_length_131_cov_13.465649	5.2	19	8.9	1.6	0	0	0	3.6	transport.potassium	potassium channel tetramerisation domain-containing protein  similar to potassium channel tetramerisation domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G09030.1); similar to BTB/POZ [Medicago truncatula] (GB:ABD28655.1); contains InterPro doma
MSGI1_115959	NODE_38015_length_79_cov_15.822784	11.7	3	0	0	0	0	4.5	0	secondary metabolism.simple phenols	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_67986	NODE_38019_length_187_cov_26.016043	13.3	26.7	42.6	22.6	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_107645	NODE_3802_length_125_cov_16.528000	6.6	7.4	41	10	0	-2	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_107644	NODE_38029_length_125_cov_16.976000	1.7	4.4	35.8	0.8	0	-5.5	-4.4	0	not assigned.unknown	not assigned.unknown
MSGI1_111459	NODE_38037_length_118_cov_9.567797	2.7	2.3	19.6	3.1	0	-2.7	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_47923	NODE_38039_length_255_cov_9.913726	11.8	14.1	2	0.9	0	0	0	4	not assigned.unknown	not assigned.unknown
MSGI1_88826	NODE_38054_length_148_cov_7.270270	9.3	3.1	38.1	7.4	0	-2.4	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_54487	NODE_38059_length_228_cov_9.434211	0	0	35.3	29.3	0	0	-6.1	-5.9	not assigned.unknown	not assigned.unknown
MSGI1_86798	NODE_38060_length_151_cov_7.456954	14	1.1	11.5	0.7	-3.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_81723	NODE_38063_length_159_cov_31.974842	25.6	15.1	0.2	0	0	0	7	4.9	cell wall.precursor synthesis.UXS	"UXS6; catalytic  similar to UXS5 (UDP-Xyl synthase 5), catalytic [Arabidopsis thaliana] (TAIR:AT3G46440.2); similar to UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE) [Arabidopsis thaliana] (TAIR:AT5G59290.2); similar to UDP-glucuronic acid decarboxylase 3 [Pop"
MSGI1_67984	NODE_3807_length_187_cov_20.775400	13.9	12.2	0.6	0.8	0	0	4.5	3.9	not assigned.unknown	not assigned.unknown
MSGI1_94663	NODE_38078_length_140_cov_6.328571	1.1	1.1	11.6	22.5	0	0	0	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_113143	NODE_38080_length_104_cov_52.182693	22.7	10.1	3.5	7	0	0	2.7	0	protein.degradation.subtilases	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G20430.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabid"
MSGI1_113143	NODE_38080_length_104_cov_52.182693	22.7	10.1	3.5	7	0	0	2.7	0	cell wall	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G20430.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabid"
MSGI1_10497	NODE_38085_length_742_cov_19.021563	14.2	16.3	26.4	5.2	0	-2.3	0	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	ATERF-9/ATERF9/ERF9 (ERF domain protein 9); DNA binding / transcription factor/ transcriptional repressor encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2
MSGI1_10497	NODE_38085_length_742_cov_19.021563	14.2	16.3	26.4	5.2	0	-2.3	0	0	hormone metabolism.ethylene.signal transduction	ATERF-9/ATERF9/ERF9 (ERF domain protein 9); DNA binding / transcription factor/ transcriptional repressor encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2
MSGI1_83562	NODE_38108_length_156_cov_3.576923	2.2	3.9	25.1	2.8	0	-3.2	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_121066	NODE_38109_length_61_cov_29.967213	16.4	9.3	0	0	0	0	5	0	not assigned.unknown	not assigned.unknown
MSGI1_16028	NODE_38117_length_577_cov_11.589254	8.4	34.2	27.8	13.8	2	0	0	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY39 (WRKY DNA-binding protein 39); transcription factor member of WRKY Transcription Factor; Group II-d Identical to Probable WRKY transcription factor 39 (WRKY DNA-binding protein 39) (WRKY39) [Arabidopsis Thaliana] (GB:Q9SR07); similar to WRKY74 (WR
MSGI1_62635	NODE_38118_length_201_cov_8.776119	4	6.6	10.7	26	0	0	0	-2	transport.misc	MATE efflux family protein  similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G12950.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT5G38030.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAI
MSGI1_87475	NODE_38128_length_150_cov_5.433333	0	0	12.2	4.8	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_35721	NODE_38143_length_322_cov_37.301243	32	23.1	10.9	9.9	0	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_121065	NODE_38150_length_61_cov_17.688524	7.3	9.5	8.8	28.8	0	1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_27934	NODE_38152_length_391_cov_17.306906	23.4	8.6	2.6	4.5	0	0	3.2	0	redox.ascorbate and glutathione.ascorbate	"DHAR3 (DEHYDROASCORBATE REDUCTASE 1); glutathione dehydrogenase (ascorbate) The protein undergoes thiolation following treatment with the  oxidant tert-butylhydroperoxide. similar to DHAR2, glutathione dehydrogenase (ascorbate) [Arabidopsis thaliana] (TA"
MSGI1_102007	NODE_38158_length_131_cov_30.068703	11.6	15.6	30.6	8.6	0	-1.8	0	0	transport.potassium	AKT2 (Arabidopsis K+ transporter 2); cyclic nucleotide binding / inward rectifier potassium channel Encodes a photosynthate- and light-dependent inward rectifying potassium channel with unique gating properties that are regulated by phosphorylation.  Exp
MSGI1_97790	NODE_38170_length_136_cov_5.691176	0.1	0	39	11.5	0	-1.8	-8.6	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_66289	NODE_38174_length_191_cov_21.073298	23.5	12.3	40.6	5.8	0	-2.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_27411	NODE_3818_length_397_cov_76.178841	18.9	25	35.8	10.5	0	-1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_121063	NODE_38190_length_61_cov_13.934426	3.4	13.5	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_71413	NODE_38193_length_179_cov_10.966480	6.9	5.8	28.4	10.3	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_100259	NODE_38217_length_133_cov_4.458647	0	0	6	12.9	0	0	0	-4.7	"metal handling.binding, chelation and storage"	"CUTA encodes a copper binding protein that forms tetramers in vitro. Gene is expressed in all tissues examined and protein is localized to the chloroplast. Identical to Protein CutA, chloroplast precursor (Copper-binding protein CutA) (AtCUTA) (CUTA) [Ar"
MSGI1_65172	NODE_38222_length_194_cov_8.809278	4.6	5.2	20.5	2	0	-3.4	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	"auxin-responsive family protein  similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G16580.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE79956.1); contains InterPro domain Auxin responsive SAUR prote"
MSGI1_92385	NODE_38226_length_143_cov_9.391608	5	10.1	0	0.2	0	0	0	5.7	not assigned.unknown	not assigned.unknown
MSGI1_64474	NODE_38237_length_196_cov_11.989796	5.9	9.9	70.4	13.2	0	-2.4	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_121060	NODE_38251_length_61_cov_24.868853	15.9	14.4	0	0	0	0	5	4.8	transporter.sugars	"hexose transporter, putative  Identical to Probable plastidic glucose transporter 2 [Arabidopsis Thaliana] (GB:Q9FYG3); similar to SGB1, carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G79820.2); similar to Sugar transporter [Medic"
MSGI1_92380	NODE_38300_length_143_cov_5.888112	0	0	1.2	12.5	0	3.4	0	-4.6	protein.degradation.ubiquitin.E3.RING	armadillo/beta-catenin repeat family protein / U-box domain-containing family protein  Identical to E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box domain protein 14) (PUB14) [Arabidopsis Thaliana] (GB:Q8VZ40;GB:Q9SV34); similar to armadillo/be
MSGI1_108648	NODE_38305_length_124_cov_9.959678	0.1	0.4	18.6	11.4	0	0	-7.5	-4.8	protein.degradation.AAA type	AAA-type ATPase family protein  similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT3G50930.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE84083.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro
MSGI1_67559	NODE_38314_length_188_cov_7.101064	2.9	21	16	2.2	2.9	-2.9	0	3.3	not assigned.unknown	not assigned.unknown
MSGI1_121058	NODE_38315_length_61_cov_42.885246	16.4	23.9	0	0.4	0	0	5	5.9	not assigned.unknown	not assigned.unknown
MSGI1_51867	NODE_3832_length_238_cov_6.789916	0	0	13.5	17.3	0	0	-4.8	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_66710	NODE_38328_length_190_cov_13.936842	8.9	14.8	1	0.8	0	0	0	4.2	signalling.receptor kinases.Catharanthus roseus-like RLK1	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39000.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G28680.1); similar to protein kinase family protein [Arabidopsis t
MSGI1_23018	NODE_38329_length_456_cov_6.410088	1.2	4.7	56.2	2.6	0	-4.4	-5.5	0	secondary metabolism.unspecified	carbonic anhydrase family protein / carbonate dehydratase family protein  similar to carbonate dehydratase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G58180.3); similar to Os09g0464000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063409.1);
MSGI1_23018	NODE_38329_length_456_cov_6.410088	1.2	4.7	56.2	2.6	0	-4.4	-5.5	0	TCA / org. transformation.carbonic anhydrases	carbonic anhydrase family protein / carbonate dehydratase family protein  similar to carbonate dehydratase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G58180.3); similar to Os09g0464000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063409.1);
MSGI1_102932	NODE_38333_length_130_cov_8.676923	2.4	2.9	16	0.5	0	-5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_89516	NODE_38358_length_147_cov_4.034014	0	0	9.1	15	0	0	0	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_84204	NODE_38361_length_155_cov_5.503226	0	0.2	7.4	12.1	0	0	0	-5.9	not assigned.unknown	not assigned.unknown
MSGI1_108646	NODE_38362_length_124_cov_10.330646	2.7	9	21.3	24.6	0	0	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_28205	NODE_38365_length_388_cov_27.853092	21.4	12.4	25	5.9	0	-2.1	0	0	cell wall	"GATL9/LGT8 (Galacturonosyltransferase-like 9); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with  putative galacturonosyltransferase activity."
MSGI1_28205	NODE_38365_length_388_cov_27.853092	21.4	12.4	25	5.9	0	-2.1	0	0	misc.UDP glucosyl and glucoronyl transferases	"GATL9/LGT8 (Galacturonosyltransferase-like 9); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with  putative galacturonosyltransferase activity."
MSGI1_65924	NODE_38385_length_192_cov_4.994792	0.1	0	4.6	14.4	0	0	0	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_76721	NODE_38416_length_168_cov_6.375000	0	0.3	14.4	12.3	0	0	-4.8	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_89515	NODE_38432_length_147_cov_5.707483	2.2	4.4	21.3	7	0	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_64086	NODE_38442_length_197_cov_13.928934	2.6	6.2	19.4	5.8	0	0	-2.9	0	transport.metabolite transporters at the mitochondrial membrane	ATMBAC2/BAC2 (Arabidopsis mitochondrial basic amino acid carrier 2); L-ornithine transporter/ binding / carnitine:acyl carnitine antiporter encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosol similar
MSGI1_35581	NODE_38452_length_323_cov_9.108359	3.1	3.9	24.3	3.9	0	-2.6	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_67138	NODE_38461_length_189_cov_4.597884	1.5	1.5	13.4	0.8	0	-4.1	0	0	misc.cytochrome P450	"CYP72A8 (cytochrome P450, family 72, subfamily A, polypeptide 8); oxygen binding putative cytochrome P450 similar to CYP72A13 (cytochrome P450, family 72, subfamily A, polypeptide 13), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14660.1); similar to"
MSGI1_92377	NODE_38468_length_143_cov_7.412588	0	0	15.5	5.4	0	0	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_72401	NODE_38474_length_177_cov_8.412430	3.8	6.1	21.1	7.6	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_121052	NODE_38476_length_61_cov_10.147541	0	0	6	11.9	0	0	0	-4.6	protein.degradation.ubiquitin.ubiquitin	"ubiquitin family protein  Identical to Putative DNA repair protein RAD23-3 (RAD23-like protein 3) (AtRAD23- 3) (RAD23-3) [Arabidopsis Thaliana] (GB:Q84L31;GB:Q9M887); similar to DNA repair protein RAD23, putative [Arabidopsis thaliana] (TAIR:AT5G38470.1)"
MSGI1_94659	NODE_38483_length_140_cov_10.964286	0	1.3	4.6	13	0	0	0	-3.3	not assigned.unknown	not assigned.unknown
MSGI1_70143	NODE_38488_length_182_cov_14.192307	1.8	15.5	0.6	0.4	3.1	0	0	5.3	not assigned.unknown	not assigned.unknown
MSGI1_103831	NODE_38491_length_129_cov_5.131783	17.8	3.2	2.6	2.6	-2.5	0	2.8	0	"misc.gluco-, galacto- and mannosidases"	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_103831	NODE_38491_length_129_cov_5.131783	17.8	3.2	2.6	2.6	-2.5	0	2.8	0	major CHO metabolism.degradation.starch.starch cleavage	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_86110	NODE_38505_length_152_cov_9.506579	0.6	0.6	19.9	2.4	0	-3.1	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_16430	NODE_38524_length_569_cov_10.166960	4.5	13.5	4.9	1	0	0	0	3.8	stress.abiotic.heat	DNAJ heat shock family protein  similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT4G28480.1); similar to Heat shock protein DnaJ [Medicago truncatula] (GB:ABE89016.1); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:
MSGI1_88821	NODE_38541_length_148_cov_11.668919	2.5	8.4	19.5	11.5	0	0	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_102004	NODE_38552_length_131_cov_7.221374	25.2	39.9	6.1	24.3	0	2	2	0	not assigned.unknown	not assigned.unknown
MSGI1_97002	NODE_38563_length_137_cov_7.481752	30.5	6.6	3.7	6.8	-2.2	0	3	0	stress.biotic	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_97002	NODE_38563_length_137_cov_7.481752	30.5	6.6	3.7	6.8	-2.2	0	3	0	cell wall	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_77753	NODE_3858_length_166_cov_23.957830	4.5	9.8	28.5	19.2	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_81154	NODE_3859_length_160_cov_24.450001	7.5	9.1	37	4.1	0	-3.2	-2.3	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	DREB1A (DEHYDRATION RESPONSE ELEMENT B1A); DNA binding / transcription factor/ transcriptional activator encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members
MSGI1_81154	NODE_3859_length_160_cov_24.450001	7.5	9.1	37	4.1	0	-3.2	-2.3	0	stress.abiotic.drought/salt	DREB1A (DEHYDRATION RESPONSE ELEMENT B1A); DNA binding / transcription factor/ transcriptional activator encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members
MSGI1_116915	NODE_38597_length_71_cov_44.732395	10.5	18	32.5	11.4	0	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_28498	NODE_38607_length_385_cov_6.862338	1.8	2.2	24.8	12.1	0	0	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_19577	NODE_3861_length_513_cov_203.109161	76.7	140	172.9	67.1	0	-1.4	-1.2	1.1	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT5G05960.1); similar to hypothetical protein [Plantago major]
MSGI1_105690	NODE_38611_length_127_cov_19.724409	38.8	22.3	22	78.9	0	1.8	0	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_104745	NODE_38622_length_128_cov_6.796875	1.6	2.1	14.9	5.3	0	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_68782	NODE_38628_length_185_cov_4.702703	1.4	3.8	14.8	4.7	0	0	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_72400	NODE_3863_length_177_cov_68.977402	3.9	4.9	146	4.9	0	-4.9	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_75183	NODE_38651_length_171_cov_4.076024	0.4	0.4	13.8	9.7	0	0	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_90176	NODE_38657_length_146_cov_43.068493	40.4	56.9	8	9.9	0	0	2.3	2.5	not assigned.unknown	not assigned.unknown
MSGI1_93116	NODE_38661_length_142_cov_7.366197	15.7	1.3	1.4	1.5	-3.6	0	3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_33311	NODE_38662_length_340_cov_11.444118	14.8	0.1	0.1	1.9	-7.2	0	7.2	0	signalling.light	"FRS10 (FAR1-RELATED SEQUENCE 10); zinc ion binding  similar to FRS11 (FAR1-RELATED SEQUENCE 11), zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G10240.1); similar to FAR1 [Medicago truncatula] (GB:ABE91851.1); similar to FAR1; Zinc finger, SWIM-type [M"
MSGI1_100253	NODE_38676_length_133_cov_11.293233	9.2	7.7	32	8.3	0	-1.9	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_86791	NODE_38686_length_151_cov_8.317881	14.3	7.2	19	3.6	0	-2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_36821	NODE_3870_length_314_cov_161.834396	11.2	14.7	93.6	21.7	0	-2.1	-3.1	0	fermentation.aldehyde dehydrogenase	ALDH7B4 (ALDEHYDE DEHYDROGENASE 7B4); 3-chloroallyl aldehyde dehydrogenase Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 7B4 (EC 1.2.1.3) (Antiquitin-1) (Turgor- responsive ALDH) (ALDH7B4) [Arabidopsis Thaliana] (GB:Q9SYG7;GB:Q546B7); simila
MSGI1_66708	NODE_3871_length_190_cov_99.178947	0	0	150.3	57.2	0	-1.4	-8.2	-6.8	fermentation.aldehyde dehydrogenase	ALDH7B4 (ALDEHYDE DEHYDROGENASE 7B4); 3-chloroallyl aldehyde dehydrogenase Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 7B4 (EC 1.2.1.3) (Antiquitin-1) (Turgor- responsive ALDH) (ALDH7B4) [Arabidopsis Thaliana] (GB:Q9SYG7;GB:Q546B7); simila
MSGI1_90928	NODE_38714_length_145_cov_21.731035	11.2	11.1	0.5	0.7	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_101167	NODE_38723_length_132_cov_5.575758	0.9	1.1	15.1	6	0	0	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_94652	NODE_38725_length_140_cov_5.542857	0	0	11.8	1.7	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_62281	NODE_3873_length_202_cov_90.247528	113	55.6	36.7	6.1	-1	-2.6	1.6	3.2	not assigned.unknown	not assigned.unknown
MSGI1_30812	NODE_38738_length_361_cov_11.614959	2.8	3.5	17.8	8.5	0	0	-2.7	0	stress.abiotic.unspecified	universal stress protein (USP) family protein  similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT3G01520.1); similar to putative ethylene response protein [Capsicum chinense] (GB:CAJ13711.1); contains InterPro domain
MSGI1_72849	NODE_38743_length_176_cov_4.403409	0.4	0.8	10.7	14.4	0	0	0	-4.2	stress.biotic	leucine-rich repeat family protein  similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G74180.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT5G49290.1); similar to leucine-rich repeat family pr
MSGI1_74255	NODE_38748_length_173_cov_5.393064	0	0	15.2	0	0	-4.9	-4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_8587	NODE_38761_length_827_cov_50.368801	26.7	34	73.1	27.9	0	-1.4	-1.5	0	transport.calcium	"ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8); calcium-transporting ATPase/ calmodulin binding Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the"
MSGI1_106665	NODE_38762_length_126_cov_8.896826	1.3	7	2.3	21.4	0	3.2	0	0	protein.postranslational modification	"CIPK4 (CBL-INTERACTING PROTEIN KINASE 4); kinase CBL-interacting protein kinase similar to CIPK7 (CBL-INTERACTING PROTEIN KINASE 7), kinase [Arabidopsis thaliana] (TAIR:AT3G23000.1); similar to CBL-interacting protein kinase 5 [Populus trichocarpa] (GB:A"
MSGI1_100252	NODE_38770_length_133_cov_6.353384	25.3	13.9	4.5	9	0	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_121041	NODE_38778_length_61_cov_2.426229	0.2	0.7	13.6	10.7	0	0	-6.1	0	not assigned.unknown	not assigned.unknown
MSGI1_37305	NODE_38787_length_311_cov_5.733119	0.2	0.4	3.3	14.8	0	0	0	-5.2	transport.ABC transporters and multidrug resistance systems	"ABC transporter family protein  Identical to White-brown complex homolog protein 11 (WBC11) [Arabidopsis Thaliana] (GB:Q8RXN0;GB:Q9LMU4); similar to CER5 (ECERIFERUM 5), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR"
MSGI1_41036	NODE_38794_length_289_cov_23.429066	8.4	19.7	2.1	3.7	0	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_20626	NODE_38796_length_491_cov_14.676171	3.6	18.9	5.3	10.3	2.4	0	0	0	transport.ABC transporters and multidrug resistance systems	"ABC transporter family protein  Identical to Multidrug resistance protein 13 (P-glycoprotein 15) (MDR13) [Arabidopsis Thaliana] (GB:Q9LHD1); similar to PGP18 (P-GLYCOPROTEIN 18), ATPase, coupled to transmembrane movement of substances [Arabidopsis thalia"
MSGI1_82965	NODE_38798_length_157_cov_6.305732	0.7	4	14.5	6.7	0	0	-4.4	0	not assigned.unknown	not assigned.unknown
MSGI1_104742	NODE_38814_length_128_cov_4.484375	1.3	2.8	18.2	6.4	0	0	-3.8	0	misc.cytochrome P450	"CYP81D3 (cytochrome P450, family 81, subfamily D, polypeptide 3); oxygen binding member of CYP81D similar to CYP81D2 (cytochrome P450, family 81, subfamily D, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37360.1); similar to CYP81D8 (c"
MSGI1_60289	NODE_38842_length_208_cov_18.456730	5	19.1	1.1	0	0	0	0	5.3	protein.degradation.ubiquitin.E3.RING	protein binding / zinc ion binding  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G58787.1); similar to Os04g0679800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054282.1); similar to H0801D08.18 [Or
MSGI1_47265	NODE_3885_length_258_cov_25.798450	0.3	0	55.9	0.2	0	-8.1	-7.5	0	amino acid metabolism.synthesis.branched chain group.common	"ATBCAT-2; branched-chain-amino-acid transaminase/ catalytic Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. Identical to Branched-chain-amino-acid aminotransferase 2, chloroplast"
MSGI1_44501	NODE_3886_length_271_cov_69.797050	0.8	0.2	87.9	0.5	0	-7.5	-6.8	0	amino acid metabolism.synthesis.branched chain group.common	"ATBCAT-2; branched-chain-amino-acid transaminase/ catalytic Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. Identical to Branched-chain-amino-acid aminotransferase 2, chloroplast"
MSGI1_121037	NODE_38871_length_61_cov_13.147541	1.9	0.9	15.2	2.1	0	0	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_24528	NODE_3888_length_433_cov_47.778290	51	186.5	56.4	114.8	1.9	1	0	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL12 (beta-galactosidase 12); beta-galactosidase putative beta-galactosidase similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis"
MSGI1_24528	NODE_3888_length_433_cov_47.778290	51	186.5	56.4	114.8	1.9	1	0	0	"misc.gluco-, galacto- and mannosidases"	"BGAL12 (beta-galactosidase 12); beta-galactosidase putative beta-galactosidase similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis"
MSGI1_60288	NODE_38906_length_208_cov_9.783654	6.1	12.8	0	0.4	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_76187	NODE_38912_length_169_cov_6.000000	0	0	12.9	1.5	0	0	-4.7	0	stress.biotic	trypsin and protease inhibitor family protein / Kunitz family protein  similar to trypsin and protease inhibitor family protein / Kunitz family protein [Arabidopsis thaliana] (TAIR:AT1G73260.1); similar to Lemir [Lycopersicon esculentum] (GB:AAC63057.1);
MSGI1_109654	NODE_38924_length_123_cov_5.975610	0.5	0.1	13.5	0	0	-4.8	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_100251	NODE_38931_length_133_cov_6.714286	0	0	12.8	8	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_101162	NODE_38934_length_132_cov_6.810606	0	0.3	25.4	14.3	0	0	-5.7	-5.6	not assigned.unknown	not assigned.unknown
MSGI1_85466	NODE_38934_length_153_cov_5.954248	0	0.2	11.4	3.3	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_83554	NODE_38941_length_156_cov_79.852562	22.8	14.3	8.5	27.1	0	1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_107628	NODE_38945_length_125_cov_6.448000	51.5	4.5	12	1.6	-3.5	0	2.1	0	secondary metabolism.flavonoids.dihydroflavonols	UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01420.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thali
MSGI1_93114	NODE_38948_length_142_cov_105.183098	31.2	56.8	26.6	58.6	0	1.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_121036	NODE_3895_length_61_cov_33.180328	1.3	21.8	0	0	4.1	0	0	5.4	not assigned.unknown	not assigned.unknown
MSGI1_60287	NODE_38992_length_208_cov_14.504807	17.8	6.3	40.2	8.6	0	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_47264	NODE_38993_length_258_cov_6.996124	0.2	0	12.8	0.2	0	-6	-6	0	hormone metabolism.cytokinin.synthesis-degradation	"UGT72C1 (UDP-glucosyl transferase 72C1); UDP-glycosyltransferase/ transferase, transferring glycosyl groups  Identical to Cytokinin-O-glucosyltransferase 1 (EC 2.4.1.-) (Zeatin O- glucosyltransferase 1) (AtZOG1) (UGT73C1) [Arabidopsis Thaliana] (GB:Q9ZQ9"
MSGI1_108630	NODE_38994_length_124_cov_6.298387	3.2	1.1	20.7	12.7	0	0	-2.7	-3.5	not assigned.unknown	not assigned.unknown
MSGI1_93112	NODE_38999_length_142_cov_3.753521	0	0.1	3.1	11.1	0	0	0	-6.8	not assigned.unknown	not assigned.unknown
MSGI1_114977	NODE_3903_length_88_cov_907.545471	237.5	237.7	68.7	319.5	0	2.2	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_96998	NODE_39038_length_137_cov_9.547445	6.7	13.8	0	0.5	0	0	0	4.8	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G27180.1); similar to TIR-NBS disease resistance-like protein [Populus trichocarpa] (GB:ABB82029"
MSGI1_68386	NODE_3905_length_186_cov_64.806450	21.8	30.3	52.8	34.8	0	0	-1.3	0	protein.synthesis.initiation	"eukaryotic translation initiation factor SUI1, putative  Identical to Protein translation factor SUI1 homolog 2 [Arabidopsis Thaliana] (GB:Q94JV4); similar to eukaryotic translation initiation factor SUI1, putative [Arabidopsis thaliana] (TAIR:AT4G27130."
MSGI1_84853	NODE_39055_length_154_cov_7.915585	1.3	5.4	14	5.6	0	0	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_121034	NODE_3906_length_61_cov_13.000000	54.8	59.9	8.8	14.4	0	0	2.6	2.1	minor CHO metabolism.myo-inositol.InsP Synthases	"inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative  Identical to Probable inositol-3-phosphate synthase isozyme 3 (EC 5.5.1.4) (Myo- inositol-1-phosphate synthase 3) (MI-1-P synthase 3) (IPS"
MSGI1_98575	NODE_39070_length_135_cov_10.207407	14	8.7	1.7	9.5	0	0	3	0	not assigned.unknown	not assigned.unknown
MSGI1_109652	NODE_39073_length_123_cov_19.398375	13.7	17.8	1.3	3.8	0	0	3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_95425	NODE_39079_length_139_cov_14.410072	12.4	14.3	55.1	7.8	0	-2.8	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_96229	NODE_39086_length_138_cov_11.123188	0	0.3	5.4	23.9	0	2.1	0	-6.3	not assigned.unknown	not assigned.unknown
MSGI1_90923	NODE_39089_length_145_cov_7.262069	1.5	0.1	13	0.5	0	-4.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_92369	NODE_39099_length_143_cov_5.622377	2.3	1.1	3.3	14.3	0	0	0	-3.7	not assigned.unknown	not assigned.unknown
MSGI1_7687	NODE_391_length_873_cov_56.445591	7.4	34.9	15.8	29.2	2.2	0	0	0	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G09970.1); similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine ki"
MSGI1_7687	NODE_391_length_873_cov_56.445591	7.4	34.9	15.8	29.2	2.2	0	0	0	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G09970.1); similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine ki"
MSGI1_16124	NODE_3910_length_575_cov_9.796522	2.3	2.6	26.2	3	0	-3.1	-3.5	0	secondary metabolism.flavonoids.dihydroflavonols	UDP-glucoronosyl/UDP-glucosyl transferase family protein the glycosyltransferase (UGT72B1) is involved in metabolizing xenobiotica (chloroaniline and chlorophenole). Comparison between wild type and knock-out mutant demonstrates the central role of this g
MSGI1_88119	NODE_39120_length_149_cov_10.751678	1.2	4.5	4.2	19.4	0	2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_43679	NODE_39133_length_275_cov_11.956364	17.1	2.9	5.9	1.5	-2.6	0	0	0	signalling.calcium	"IQD19 (IQ-DOMAIN 19); calmodulin binding  similar to IQD26 (IQ-domain 26), calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G16490.1); similar to IQ calmodulin-binding motif family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP5380"
MSGI1_68385	NODE_39142_length_186_cov_19.881720	24.9	30.6	81.1	22.3	0	-1.9	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_59947	NODE_39156_length_209_cov_3.674641	0.2	0.3	16.5	5.9	0	0	-6.4	0	secondary metabolism.flavonoids.dihydroflavonols	"CYP82C2 (cytochrome P450, family 82, subfamily C, polypeptide 2); oxygen binding member of CYP82C similar to CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31950.1); similar to CYP82C4 (c"
MSGI1_59947	NODE_39156_length_209_cov_3.674641	0.2	0.3	16.5	5.9	0	0	-6.4	0	misc.cytochrome P450	"CYP82C2 (cytochrome P450, family 82, subfamily C, polypeptide 2); oxygen binding member of CYP82C similar to CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31950.1); similar to CYP82C4 (c"
MSGI1_75179	NODE_39164_length_171_cov_5.538012	0.4	1.6	12.2	0.4	0	-4.9	-4.9	0	cell wall.cellulose synthesis.cellulose synthase	"CESA4 (CELLULASE SYNTHASE 4); transferase, transferring glycosyl groups Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Identical to Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC 2.4.1.12) (AtCesA-4) (Irregular xyl"
MSGI1_66706	NODE_39169_length_190_cov_6.910526	25.5	17.8	66.3	15.2	0	-2.1	-1.4	0	minor CHO metabolism.others	aldose 1-epimerase family protein  similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT5G15140.1); similar to Galactose mutarotase-like [Medicago truncatula] (GB:ABE81353.1); contains InterPro domain Galactose mutarotase-like; (Int
MSGI1_38583	NODE_3918_length_303_cov_38.468647	47.4	41.8	17.8	48.6	0	1.4	1.4	0	cell wall.pectin*esterases.PME	pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT4G33220.1); similar to Pectinesterase PPE8B precursor (Pectin methylesterase) (PE) (GB:Q43062); similar to pectin methylesterase PME1 [Vitis vinifera]
MSGI1_80596	NODE_39193_length_161_cov_6.583851	31.2	4.2	4.8	4.5	-2.9	0	2.7	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL10 (beta-galactosidase 10); beta-galactosidase member of Glycoside Hydrolase Family 35 similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative"
MSGI1_80596	NODE_39193_length_161_cov_6.583851	31.2	4.2	4.8	4.5	-2.9	0	2.7	0	"misc.gluco-, galacto- and mannosidases"	"BGAL10 (beta-galactosidase 10); beta-galactosidase member of Glycoside Hydrolase Family 35 similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative"
MSGI1_87466	NODE_39240_length_150_cov_5.653333	0	0	16.6	0	0	-5.1	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_72396	NODE_39245_length_177_cov_6.581921	24.4	6.4	9	8	-1.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_81147	NODE_39252_length_160_cov_7.956250	2.9	3.6	11.7	18.4	0	0	0	-2.4	protein.aa activation.arginine-tRNA ligase	"EMB1027 (EMBRYO DEFECTIVE 1027); ATP binding / arginine-tRNA ligase  similar to arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT1G66530.1); similar to unnamed protein product [Oryza sativa (japonica cult"
MSGI1_61247	NODE_39256_length_205_cov_12.478048	16.1	0.1	4.4	0.8	-7.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_59041	NODE_39261_length_212_cov_18.674528	20.5	20.1	60.4	13.4	0	-2.2	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_34054	NODE_39275_length_334_cov_12.730539	17.8	3.3	11.8	9.8	-2.4	0	0	0	cell wall	strictosidine synthase family protein  similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT5G22020.1); similar to putative strictosidine synthase [Lycopersicon esculentum] (GB:AAF75751.1); contains InterPro domain Strictosidine
MSGI1_34054	NODE_39275_length_334_cov_12.730539	17.8	3.3	11.8	9.8	-2.4	0	0	0	secondary metabolism.N misc.alkaloid-like	strictosidine synthase family protein  similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT5G22020.1); similar to putative strictosidine synthase [Lycopersicon esculentum] (GB:AAF75751.1); contains InterPro domain Strictosidine
MSGI1_105678	NODE_39280_length_127_cov_8.645669	1.1	2.8	41.6	4.3	0	-3.3	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_101996	NODE_39283_length_131_cov_5.755725	0.1	0.2	11.1	2.3	0	0	-6.8	0	not assigned.unknown	not assigned.unknown
MSGI1_79988	NODE_39295_length_162_cov_13.716049	13.7	23.3	0.4	0	0	0	5.1	5.5	not assigned.unknown	not assigned.unknown
MSGI1_47921	NODE_39312_length_255_cov_9.098040	11.8	27.6	5.4	5.7	0	0	0	2.3	not assigned.unknown	not assigned.unknown
MSGI1_87463	NODE_39317_length_150_cov_22.986666	9.6	8.6	58.3	19.3	0	-1.6	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_99411	NODE_39330_length_134_cov_6.432836	0	0	13	4.4	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_79987	NODE_39332_length_162_cov_12.074074	9.2	15.2	35.3	2.7	0	-3.7	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_121027	NODE_39344_length_61_cov_13.114754	7.8	41.2	10.4	7.8	2.4	0	0	2.4	RNA.regulation of transcription.GRAS transcription factor family	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_121027	NODE_39344_length_61_cov_13.114754	7.8	41.2	10.4	7.8	2.4	0	0	2.4	development.unspecified	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_64811	NODE_39346_length_195_cov_23.779488	16.9	13.5	0	0	0	0	5.1	4.8	not assigned.unknown	not assigned.unknown
MSGI1_49686	NODE_39351_length_247_cov_9.437247	0.5	0.6	21.2	0.8	0	-4.7	-5.4	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_93907	NODE_39365_length_141_cov_6.283688	0.4	2.1	15.9	13.4	0	0	-5.3	0	not assigned.unknown	not assigned.unknown
MSGI1_113142	NODE_39373_length_104_cov_62.903847	41.7	6.4	0	0	-2.7	0	6.4	0	not assigned.unknown	not assigned.unknown
MSGI1_49952	NODE_3939_length_246_cov_188.004059	5.5	3.8	27.9	10.7	0	0	-2.3	0	cell wall	GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP5) Identical to Germin-like protein subfamily 2 member 1 precursor (GLP4) [Arabidopsis Thaliana] (GB:P94014;GB:O80538;GB:P94097); similar
MSGI1_49952	NODE_3939_length_246_cov_188.004059	5.5	3.8	27.9	10.7	0	0	-2.3	0	stress.abiotic.unspecified	GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP5) Identical to Germin-like protein subfamily 2 member 1 precursor (GLP4) [Arabidopsis Thaliana] (GB:P94014;GB:O80538;GB:P94097); similar
MSGI1_56108	NODE_39390_length_222_cov_25.522522	15.2	62.9	20.6	29.2	2	0	0	1.1	not assigned.unknown	not assigned.unknown
MSGI1_116702	NODE_39425_length_73_cov_39.657536	16.7	11.8	57.4	5.6	0	-3.4	-1.8	0	lipid metabolism.lipid degradation.lysophospholipases.phosphoinositide phospholipase C	"ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phosp"
MSGI1_116702	NODE_39425_length_73_cov_39.657536	16.7	11.8	57.4	5.6	0	-3.4	-1.8	0	signalling.phosphinositides.phosphoinositide phospholipase C	"ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phosp"
MSGI1_18633	NODE_3946_length_528_cov_68.418564	0	0	34.6	6.9	0	-2.3	-6.1	0	not assigned.unknown	not assigned.unknown
MSGI1_55833	NODE_39467_length_223_cov_15.641255	19.8	28.7	73.2	38.7	0	0	-1.9	0	secondary metabolism.N misc.alkaloid-like	"FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to EDA28/MEE23 (embryo sac development arrest 28, maternal effect embryo arrest 23), electron carrier [Arabidopsis"
MSGI1_55833	NODE_39467_length_223_cov_15.641255	19.8	28.7	73.2	38.7	0	0	-1.9	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to EDA28/MEE23 (embryo sac development arrest 28, maternal effect embryo arrest 23), electron carrier [Arabidopsis"
MSGI1_74253	NODE_39468_length_173_cov_8.664740	8.4	13.3	0	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_55555	NODE_39468_length_224_cov_16.205357	76.2	30.5	19.9	20.1	-1.3	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_64084	NODE_39489_length_197_cov_24.903553	20.6	20.2	4.1	7.6	0	0	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_49007	NODE_39499_length_250_cov_10.360000	15.9	28.6	84.3	23.5	0	-1.8	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_101989	NODE_3951_length_131_cov_7.763359	16.8	7.2	2.8	12	0	0	2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_101988	NODE_39515_length_131_cov_7.900764	9.9	13.8	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_74688	NODE_39520_length_172_cov_6.790698	1	0.9	15	7.1	0	0	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_112033	NODE_39522_length_113_cov_46.407078	40.9	44.4	23.8	58.8	0	1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_96993	NODE_39524_length_137_cov_4.430657	0.3	2.1	15.7	10.4	0	0	-5.7	0	misc.misc2	"epoxide hydrolase, putative  similar to epoxide hydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G02340.1); similar to Alpha/beta hydrolase [Medicago truncatula] (GB:ABE85693.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR0003"
MSGI1_91647	NODE_39546_length_144_cov_5.895833	0.4	1	11.9	1	0	0	-4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_74251	NODE_39557_length_173_cov_8.861272	12.2	28.7	6.2	8.8	0	0	0	1.7	not assigned.unknown	not assigned.unknown
MSGI1_92366	NODE_39559_length_143_cov_5.608392	0.8	2	13.6	0.7	0	-4.3	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_37444	NODE_39559_length_310_cov_13.770967	0	0	18.3	26.1	0	0	-5.2	-5.7	not assigned.unknown	not assigned.unknown
MSGI1_26703	NODE_39560_length_405_cov_17.856791	21.7	23.1	59.9	16.3	0	-1.9	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_52365	NODE_39565_length_236_cov_16.618645	12.5	34.4	11.1	7.3	0	0	0	2.2	not assigned.unknown	not assigned.unknown
MSGI1_84195	NODE_39566_length_155_cov_8.341935	0	0	5.9	19.1	0	0	0	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_33014	NODE_39573_length_342_cov_10.690059	0.6	1.7	22.7	28.3	0	0	-5.2	-4.1	not assigned.unknown	not assigned.unknown
MSGI1_112924	NODE_39574_length_106_cov_79.641510	71.4	21.2	1.5	1.2	-1.8	0	5.6	4.1	cell.organisation	"ACT3 (ACTIN 3); structural constituent of cytoskeleton Member of the Actin gene family. Expressed in mature pollen. Identical to Actin-1/3 (ACT3) [Arabidopsis Thaliana] (GB:P10671;GB:P53493;GB:Q9M351); similar to ACT11 (ACTIN-11), structural constituent"
MSGI1_89507	NODE_39578_length_147_cov_34.530613	33.8	18.5	7	5.8	0	0	2.3	0	secondary metabolism.simple phenols	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_25915	NODE_3959_length_415_cov_17.946987	0.4	4.5	43.6	3	0	-3.9	-6.8	0	not assigned.unknown	not assigned.unknown
MSGI1_93103	NODE_39593_length_142_cov_4.126760	17.7	0.5	4.3	0.7	-5.1	0	0	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G29660.1); similar to GDSL-lipase 1 [Capsicum annuum] (GB:AAZ23955.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; ("
MSGI1_102909	NODE_39611_length_130_cov_6.076923	0.5	0.6	12.7	3.4	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_110648	NODE_39618_length_122_cov_5.877049	3.5	9.7	6.9	24.9	0	1.9	0	0	transport.misc	"MATE efflux family protein  similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G11670.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G61890.1); similar to MATE efflux family protein, expressed [Oryza sativa ("
MSGI1_47920	NODE_3962_length_255_cov_20.941177	92.9	48.9	23.5	29.4	0	0	2	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	"ELI3-2 (ELICITOR-ACTIVATED GENE 3) Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria.  Though similar to mannitol dehydrogenases, this enzyme does not have"
MSGI1_30009	NODE_39635_length_369_cov_7.669377	9.8	12.3	0.1	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_78271	NODE_39637_length_165_cov_4.721212	0.5	0.9	3	12	0	0	0	-3.7	cell wall	"leucine-rich repeat family protein / protein kinase family protein  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G35710.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB"
MSGI1_78271	NODE_39637_length_165_cov_4.721212	0.5	0.9	3	12	0	0	0	-3.7	signalling.receptor kinases.leucine rich repeat XII	"leucine-rich repeat family protein / protein kinase family protein  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G35710.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB"
MSGI1_121014	NODE_39654_length_61_cov_6.573771	17.9	0.5	4.4	1.2	-5.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_113141	NODE_3967_length_104_cov_28.028847	0.3	10.4	3.5	11.6	5.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_108622	NODE_39695_length_124_cov_34.879032	40.6	26.8	9.2	14.6	0	0	2.1	0	RNA.RNA binding	"RNA recognition motif (RRM)-containing protein  similar to RNA binding [Arabidopsis thaliana] (TAIR:AT4G26650.2); similar to RNA-binding protein, putative [Musa acuminata] (GB:ABF70162.1); similar to Os07g0584500 [Oryza sativa (japonica cultivar-group)]"
MSGI1_121010	NODE_39697_length_61_cov_21.114754	34.1	27.7	8.4	6.2	0	0	2	2.2	not assigned.unknown	not assigned.unknown
MSGI1_88114	NODE_397_length_149_cov_38.442951	99.6	30	13	23.7	-1.7	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_40843	NODE_3972_length_290_cov_122.006897	78.9	44	36.4	48.2	0	0	1.1	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S14 (RPS14B)  Identical to 40S ribosomal protein S14-2 (RPS14B) [Arabidopsis Thaliana] (GB:Q9CAX6); Identical to 40S ribosomal protein S14-1 (RPS14A) [Arabidopsis Thaliana] (GB:Q9SIH0); similar to 40S ribosomal protein S14 (RPS14A) [
MSGI1_107620	NODE_39732_length_125_cov_8.240000	0	0	17	2.4	0	-2.8	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_84191	NODE_39733_length_155_cov_10.703226	4	11.5	0.5	0.2	0	0	0	5.8	not assigned.unknown	not assigned.unknown
MSGI1_79381	NODE_39742_length_163_cov_54.552147	26.7	45	8	23.5	0	0	1.7	0	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase	NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) chloroplast-targeted member of a family of  enzymes similar to nine-cis-epoxycarotenoid dioxygenase similar to NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5) [Arabidopsis thaliana] (TAIR:AT1G30100.1); similar
MSGI1_32095	NODE_39743_length_350_cov_8.825714	11.2	18.7	1.3	2.2	0	0	0	3.1	not assigned.unknown	not assigned.unknown
MSGI1_55553	NODE_39747_length_224_cov_11.299108	10.5	16.2	0	0.2	0	0	0	6.3	protein.synthesis.initiation	
MSGI1_117419	NODE_39751_length_67_cov_52.089554	8.5	12.7	0	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_107618	NODE_39764_length_125_cov_71.720001	60	75.5	23.5	48.5	0	0	1.4	0	RNA.processing.RNA helicase	PRH75 (plant RNA helicase 75); ATP-dependent helicase DEAD/DEAH box RNA helicase PRH75 Identical to DEAD-box ATP-dependent RNA helicase 7 (EC 3.6.1.-) (RH7) [Arabidopsis Thaliana] (GB:Q39189;GB:Q94BX7;GB:Q9LVB7); similar to EMB1138 (EMBRYO DEFECTIVE 1138
MSGI1_111089	NODE_39793_length_121_cov_124.206612	16.6	6.5	0.3	0	0	0	5.8	0	PS.lightreaction.photosystem II.LHC-II	"chlorophyll A-B binding protein CP29 (LHCB4)  Identical to Chlorophyll a-b binding protein CP29.1, chloroplast precursor (LHCII protein 4.1) (LHCB4.1) (LHCB4.1) [Arabidopsis Thaliana] (GB:Q07473;GB:Q8RWN1;GB:Q94AD5;GB:Q94K17); similar to LHCB4.2 (LIGHT H"
MSGI1_46662	NODE_398_length_261_cov_254.823761	302.2	265.7	2.7	3	0	0	6.8	6.5	protein.aa activation.lysine-tRNA ligase	"lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative  Identical to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) [Arabidopsis Thaliana] (GB:Q9ZPI1); similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Ar"
MSGI1_42574	NODE_39803_length_281_cov_6.402135	5.6	27.5	19.9	7.6	2.3	0	0	1.9	not assigned.unknown	not assigned.unknown
MSGI1_114867	NODE_39810_length_89_cov_174.146072	89.8	59	25	26.5	0	0	1.8	1.2	not assigned.unknown	not assigned.unknown
MSGI1_72846	NODE_39825_length_176_cov_30.329546	32.3	55.2	0.2	0	0	0	7.3	6.8	not assigned.unknown	not assigned.unknown
MSGI1_116701	NODE_3984_length_73_cov_73.273972	16.8	23.8	5.1	3.8	0	0	0	2.6	not assigned.unknown	not assigned.unknown
MSGI1_58388	NODE_39854_length_214_cov_18.813084	16.8	4	0.9	1.1	0	0	4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_113491	NODE_39857_length_102_cov_27.558823	22.8	14.8	0	1.2	0	0	5.5	3.6	stress.biotic	"thaumatin, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G24180.1); similar to Thaumatin, pathogenesis-related [Medicago truncatula] (GB:ABE77922.1); similar to Os03g0243900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049531"
MSGI1_106645	NODE_39879_length_126_cov_4.849206	1.1	2.5	13.2	2.4	0	0	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_95417	NODE_39882_length_139_cov_14.374101	7.8	10.4	12.6	38.9	0	1.6	0	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_27832	NODE_39886_length_392_cov_157.795914	194.8	96.8	67.7	98.2	-1	0	1.5	0	cell wall.cell wall proteins.RGP	"RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1) reversibly glycosylated polypeptide possibly involved in plant cell wall synthesis similar to RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3), alpha-1,4-glucan-protein synthase (UDP-forming) [Arabidopsis thaliana"
MSGI1_121002	NODE_39887_length_61_cov_42.229507	55.2	25.5	18.4	34.6	-1.1	0	1.6	0	cell wall.cell wall proteins.RGP	"RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1) reversibly glycosylated polypeptide possibly involved in plant cell wall synthesis similar to RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3), alpha-1,4-glucan-protein synthase (UDP-forming) [Arabidopsis thaliana"
MSGI1_11885	NODE_399_length_693_cov_174.575760	61.6	40.1	28.4	24.9	0	0	1.1	0	TCA / org. transformation.other organic acid transformaitons.atp-citrate lyase	ACLB-1 (ATP-citrate lyase B-1) One of the two genes encoding subunit B of the trimeric enzyme ATP Citrate lyase similar to ACLB-2 (ATP-citrate lyase B-2) [Arabidopsis thaliana] (TAIR:AT5G49460.1); similar to ATP citrate lyase a-subunit [Lupinus albus] (G
MSGI1_115957	NODE_39907_length_79_cov_23.063292	16.3	11.9	0	0	0	0	5	4.6	lipid metabolism.lipid transfer proteins etc	lipid transfer protein-related  Identical to Uncharacterized GPI-anchored protein At1g27950 precursor [Arabidopsis Thaliana] (GB:Q9C7F7;GB:Q570M7;GB:Q8LEI0); similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3) [Ar
MSGI1_72843	NODE_39908_length_176_cov_6.732955	0.1	0.4	14.8	3.6	0	0	-7.2	0	not assigned.unknown	not assigned.unknown
MSGI1_47040	NODE_39913_length_259_cov_6.057915	8.7	7	28.6	26.6	0	0	0	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_41961	NODE_3994_length_284_cov_26.024649	3.4	20	20.1	4.1	2.6	-2.3	-2.6	2.3	not assigned.unknown	not assigned.unknown
MSGI1_39799	NODE_39943_length_296_cov_77.054054	21	13.2	49.9	5.6	0	-3.2	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_103812	NODE_39962_length_129_cov_7.875969	1.9	2.9	11	17.1	0	0	0	-2.6	not assigned.unknown	not assigned.unknown
MSGI1_68775	NODE_39963_length_185_cov_6.475676	0.7	1.5	19.9	0.6	0	-5.1	-4.8	0	protein.degradation.metalloprotease	"S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly"
MSGI1_120996	NODE_39968_length_61_cov_6.377049	3.7	12.2	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_21195	NODE_3998_length_481_cov_34.740124	70.7	17.9	38.5	39.1	-2	0	0	0	nucleotide metabolism.phosphotransfer and pyrophosphatases.nucleoside diphosphate kinase	"nucleoside diphosphate kinase 4 (NDK4)  Identical to Nucleoside diphosphate kinase IV, chloroplast/mitochondrial precursor (EC 2.7.4.6) (NDK IV) (NDP kinase IV) (NDPK IV) (Nucleoside diphosphate kinase 4) (NDK4) [Arabidopsis Thaliana] (GB:Q8LAH8;GB:Q9T0A"
MSGI1_21558	NODE_39994_length_476_cov_7.777311	6.4	5	66.3	6.1	0	-3.4	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_87459	NODE_40000_length_150_cov_6.446667	76.4	38.7	7.4	7.8	0	0	3.4	2.3	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2A.4 (HTA12) [Arabidopsis Thaliana] (GB:Q9LZ46); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT5G59870.1); similar to Histone H2A (GB:Q9M531); contains InterPro domain Histone-fold;"
MSGI1_100232	NODE_40015_length_133_cov_12.165414	2.6	0.8	22.5	1.3	0	-4.1	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_76181	NODE_40016_length_169_cov_29.230770	31	36.8	85.9	57.6	0	0	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_53430	NODE_40020_length_232_cov_10.284483	12.7	41.5	9	19.7	1.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_84188	NODE_40025_length_155_cov_6.580645	1.5	3.2	14.2	2.8	0	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_85461	NODE_40047_length_153_cov_5.555555	0.2	0.3	9.8	13.8	0	0	0	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_71913	NODE_40052_length_178_cov_13.893258	17.6	19.2	2.4	9.5	0	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_82956	NODE_40053_length_157_cov_12.286624	5.4	14.3	4.2	1.6	0	0	0	3.2	not assigned.unknown	not assigned.unknown
MSGI1_94639	NODE_40056_length_140_cov_5.228571	0	0	6.3	13	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_120989	NODE_40072_length_61_cov_10.573771	0	0	13.6	10.3	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_83550	NODE_40094_length_156_cov_7.576923	6.5	6.9	57.1	3.7	0	-3.9	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_96213	NODE_40106_length_138_cov_5.355072	1.9	4.3	33.4	4.3	0	-3	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_108609	NODE_40112_length_124_cov_8.790322	8.7	4.8	64.3	3.8	0	-4.1	-2.9	0	nucleotide metabolism.synthesis.pyrimidine.CTP synthetase	"CTP synthase, putative / UTP--ammonia ligase, putative  similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT2G34890.1); similar to EMB2742 (EMBRYO DEFECTIVE 2742), CTP synthase [Arabidopsis thaliana] (TAIR:AT3"
MSGI1_89503	NODE_40114_length_147_cov_9.374149	23.7	6.1	5.8	17.8	-2	0	2	0	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit JP650 precursor (Aromatic-rich glycoprotein JP650) (JP650) [Arabidopsis Thaliana] (GB:P92990;GB:O64599;GB:Q8H7B8;GB:Q93ZQ4); simil"
MSGI1_67133	NODE_40119_length_189_cov_16.529100	5.2	16.5	1.2	1.6	0	0	0	3.4	not assigned.unknown	not assigned.unknown
MSGI1_22563	NODE_40138_length_462_cov_8.880953	6.1	20.9	37.7	11.6	0	-1.7	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_93893	NODE_40139_length_141_cov_20.843971	11.6	2.3	15.2	1.5	0	-3.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_105668	NODE_40149_length_127_cov_5.685040	0.7	0.3	7.2	11.2	0	0	0	-5.2	cell.organisation	"VLN4 (ARABIDOPSIS THALIANA VILLIN 4); actin binding Arabidopsis thaliana VILLIN4 Identical to Villin-4 (VLN4) [Arabidopsis Thaliana] (GB:O65570;GB:Q9SZW9); similar to villin, putative [Arabidopsis thaliana] (TAIR:AT5G57320.1); similar to VLN3 (VILLIN 3),"
MSGI1_87456	NODE_40153_length_150_cov_6.206666	0.5	0.5	15.9	17.4	0	0	-5	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_42573	NODE_4016_length_281_cov_152.583633	1	85.9	36	57.8	6.4	0	-5.2	0	nucleotide metabolism.degradation	"AHL (HAL2-LIKE); 3'(2'),5'-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase Encodes a 3'-phosphoadenosine-5'-phosphate (PAP) phosphatase that is sensitive to physiological concentrations of Na+.  It does not also act as inositol po"
MSGI1_47456	NODE_40165_length_257_cov_19.260700	14.4	9.5	47.7	22.7	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_35166	NODE_40168_length_326_cov_13.598160	29.6	8.5	3.9	8.4	-1.8	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_76179	NODE_4019_length_169_cov_10.266273	2.9	11.2	0	0	0	0	0	4.5	cell wall.degradation.pectate lyases and polygalacturonases	pectate lyase family protein  Identical to Probable pectate lyase 18 precursor (EC 4.2.2.2) (Pectate lyase A10) [Arabidopsis Thaliana] (GB:Q9C5M8;GB:O23667;GB:Q8LAW7;GB:Q9SB71); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT1G677
MSGI1_20432	NODE_402_length_495_cov_165.585861	48	88.7	27.5	74.4	0	1.4	0	0	cell wall.cell wall proteins.AGPs	FLA12 (fasciclin-like arabinogalactan-protein 12)  Identical to Fasciclin-like arabinogalactan protein 12 precursor (FLA12) [Arabidopsis Thaliana] (GB:Q8LEE9;GB:Q94EG7;GB:Q9FKJ8); similar to FLA11 (fasciclin-like arabinogalactan-protein 11) [Arabidopsis t
MSGI1_41034	NODE_40201_length_289_cov_17.079584	16.1	31.3	10.8	34.2	0	1.7	0	0	misc.cytochrome P450	"CYP94C1 (cytochrome P450, family 94, subfamily C, polypeptide 1); oxygen binding member of CYP94C similar to CYP94B3 (cytochrome P450, family 94, subfamily B, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G48520.1); similar to cytochrome"
MSGI1_58728	NODE_40203_length_213_cov_6.112676	20.8	7.6	2.7	2.4	0	0	2.9	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_114034	NODE_40210_length_97_cov_31.484535	26.1	62.3	41	30.6	1.3	0	0	0	stress.biotic	EDS1 (ENHANCED DISEASE SUSCEPTIBILITY 1); signal transducer/ triacylglycerol lipase Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases. similar to lipase class 3 family protein / disease resistance
MSGI1_120979	NODE_40215_length_61_cov_9.196721	0.2	0	11.6	16.9	0	0	-5.9	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_120978	NODE_40220_length_61_cov_19.590164	11.7	19.6	1.6	1.6	0	0	0	3.6	not assigned.unknown	not assigned.unknown
MSGI1_111946	NODE_40227_length_114_cov_5.131579	4.2	3.3	25.1	10.9	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_64082	NODE_40227_length_197_cov_38.406090	15.4	18.4	4.9	3.5	0	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_120977	NODE_40229_length_61_cov_20.590164	12.5	16.9	0	0	0	0	4.6	5.1	not assigned.unknown	not assigned.unknown
MSGI1_71022	NODE_40242_length_180_cov_26.494444	31.1	37.6	5.3	6.9	0	0	2.6	2.4	not assigned.unknown	not assigned.unknown
MSGI1_52099	NODE_40254_length_237_cov_5.890296	2.2	4.8	35.5	7.2	0	-2.3	-4	0	development.unspecified	seven in absentia (SINA) family protein  Identical to E3 ubiquitin-protein ligase SINAT3 (EC 6.3.2.-) (Seven in absentia homolog 3) (SINAT3) [Arabidopsis Thaliana] (GB:Q84JL3;GB:Q8LFQ3;GB:Q9M359); similar to seven in absentia (SINA) family protein [Arabi
MSGI1_120973	NODE_40255_length_61_cov_48.311474	33.6	25	0	0	0	0	6.1	5.6	not assigned.unknown	not assigned.unknown
MSGI1_63376	NODE_40256_length_199_cov_33.165829	98	20.7	32.3	25	-2.2	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_96981	NODE_4026_length_137_cov_25.248175	73.4	26.9	27.2	47.6	-1.4	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_10916	NODE_40260_length_727_cov_89.643738	53.1	50.3	166.3	70	0	-1.2	-1.6	0	cell wall	GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP5) Identical to Germin-like protein subfamily 2 member 1 precursor (GLP4) [Arabidopsis Thaliana] (GB:P94014;GB:O80538;GB:P94097); similar
MSGI1_10916	NODE_40260_length_727_cov_89.643738	53.1	50.3	166.3	70	0	-1.2	-1.6	0	stress.abiotic.unspecified	GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP5) Identical to Germin-like protein subfamily 2 member 1 precursor (GLP4) [Arabidopsis Thaliana] (GB:P94014;GB:O80538;GB:P94097); similar
MSGI1_81706	NODE_40270_length_159_cov_6.773585	2.8	3.9	8.8	32.4	0	1.9	0	-3.1	major CHO metabolism.synthesis.starch.AGPase	"APL2 (large subunit of AGP 2) ADP-glucose pyrophosphorylase catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large sub"
MSGI1_112520	NODE_40289_length_109_cov_91.220184	41.7	10	4.9	4.1	-2.1	0	3.1	0	cell wall.cell wall proteins.AGPs	"FLA2 (FLA2) AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds Identical to Fasciclin-like arabinogalactan protein 2 precursor (FLA2) [Arabidopsis Thaliana] (GB:Q9SU13;GB:Q8L9T2;GB:Q9C5Q6); similar to FLA1 (F"
MSGI1_38063	NODE_40301_length_306_cov_22.035948	29.4	3	28.6	14.3	-3.3	0	0	0	cell wall	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT3G47380.1); similar to putative ripening-related protein [Vitis vinife
MSGI1_38063	NODE_40301_length_306_cov_22.035948	29.4	3	28.6	14.3	-3.3	0	0	0	misc.invertase/pectin methylesterase inhibitor family protein	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT3G47380.1); similar to putative ripening-related protein [Vitis vinife
MSGI1_49003	NODE_40304_length_250_cov_9.236000	6.9	11	0.3	0.3	0	0	0	5.2	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	"similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43440.1); similar to ZIM motif family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96481.1); similar to OSJNBa0060D06.16 [Oryza sativa (japonica cultivar-group)] (GB:CAE0"
MSGI1_73286	NODE_40310_length_175_cov_7.080000	2.3	2.8	36.5	10.4	0	-1.8	-4	0	misc.cytochrome P450	"CYP81D8 (cytochrome P450, family 81, subfamily D, polypeptide 8); oxygen binding member of CYP81D similar to CYP81D2 (cytochrome P450, family 81, subfamily D, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37360.1); similar to CYP81D5 (c"
MSGI1_105663	NODE_40313_length_127_cov_18.244095	13.5	49.7	26.1	77.8	1.9	1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_104722	NODE_40346_length_128_cov_7.257812	0	0	28.8	17.2	0	0	-5.8	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_19766	NODE_4036_length_509_cov_17.640472	91.2	80.1	45.6	38.6	0	0	1	1.1	not assigned.unknown	not assigned.unknown
MSGI1_85458	NODE_40360_length_153_cov_14.130719	7.3	6.3	37.7	2.3	0	-4	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_41960	NODE_40364_length_284_cov_12.341549	24.4	0.8	5.9	0.4	-4.9	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_98556	NODE_40365_length_135_cov_9.511111	9.4	5.9	9.2	23.3	0	0	0	-2	amino acid metabolism.degradation.glutamate family.proline	"proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative  similar to ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5, PROLINE OXIDASE), proline dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G30775.1); similar to proline dehydrogenase"
MSGI1_116804	NODE_40372_length_72_cov_32.541668	22.9	20.5	5.1	5.7	0	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_114245	NODE_40378_length_95_cov_21.263159	9.5	15.1	0	0	0	0	0	4.9	not assigned.unknown	not assigned.unknown
MSGI1_68772	NODE_40381_length_185_cov_70.778381	93.4	71.4	458	59	0	-3	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_118147	NODE_40383_length_62_cov_41.661289	6.1	24.6	19.4	9	2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_62275	NODE_40389_length_202_cov_11.163366	11	5.2	41	9	0	-2.2	-1.9	0	transport.peptides and oligopeptides	"proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G52190.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32296.1); sim"
MSGI1_61604	NODE_40394_length_204_cov_7.450980	0	0.2	18.9	11.9	0	0	-5.2	-5.9	not assigned.unknown	not assigned.unknown
MSGI1_66703	NODE_40396_length_190_cov_12.873684	13.4	12.3	1.4	1.2	0	0	3.3	0	glycolysis.G6PIsomerase	"glucose-6-phosphate isomerase, cytosolic (PGIC)  Identical to Glucose-6-phosphate isomerase, cytosolic (EC 5.3.1.9) (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) (PGIC) [Arabidopsis Thaliana] (GB:Q9FXN0;GB:Q9FXN1;GB:Q9FXN2;GB:Q9F"
MSGI1_112919	NODE_40406_length_106_cov_15.103773	12.7	9.7	0.9	6.3	0	0	3.8	0	amino acid metabolism.degradation.serine-glycine-cysteine group.serine	"OMR1 (L-O-METHYLTHREONINE RESISTANT 1); threonine ammonia-lyase first enzyme in the biosynthetic pathway of isoleucine Identical to Threonine dehydratase biosynthetic, chloroplast precursor (EC 4.3.1.19) (Threonine deaminase) (TD) (OMR1) [Arabidopsis Tha"
MSGI1_84843	NODE_40408_length_154_cov_5.603896	0.5	1.2	12	9.1	0	0	-4.6	0	stress.biotic	leucine-rich repeat family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT5G27060.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT2G15080.2); similar to disease resistance family prote
MSGI1_115650	NODE_40411_length_82_cov_54.207317	42.7	27.2	92.3	48.2	0	0	-1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_41370	NODE_40425_length_287_cov_15.317073	20.1	78.9	5	7.9	2	0	0	3.3	cell wall.degradation.pectate lyases and polygalacturonases	pectate lyase family protein  similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G24780.1); similar to pectate lyase [Gossypium hirsutum] (GB:AAY85180.1); similar to pectate lyase [Vitis vinifera] (GB:AAF63756.1); similar to Pectate
MSGI1_37141	NODE_4044_length_312_cov_8.977564	0.4	0.2	11.3	9.5	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_120958	NODE_4044_length_61_cov_51.573769	122	28.8	33.9	35.8	-2.1	0	1.8	0	cell wall.cellulose synthesis	"ATCSLA02 (Cellulose synthase-like A2); transferase, transferring glycosyl groups encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein similar to ATCSLA15 (Cellulose synthase-like A15), transferase, transfer"
MSGI1_113612	NODE_4045_length_101_cov_118.772278	3.1	9.6	176.7	0.6	0	-8.2	-5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_49436	NODE_40466_length_248_cov_4.786290	2.2	2.8	13	1.1	0	-3.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_120955	NODE_40467_length_61_cov_17.442623	11	0.9	0	0	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_52098	NODE_4047_length_237_cov_87.831223	5.6	8.7	49.1	9.4	0	-2.4	-3.1	0	cell wall.modification	"ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1) member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-like A1 precursor (AtEXLA1) (AtEXPL1) (At-EXPL1) (Ath- ExpBeta-2.1) (EXLA1"
MSGI1_99391	NODE_40482_length_134_cov_6.477612	5.2	7.7	26.2	9	0	0	-2.3	0	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G22920.1); similar to Zinc finger, RING-type; Zinc finger, CHY-type [Medicago truncatula] (GB:ABE83637.1);"
MSGI1_71406	NODE_40483_length_179_cov_18.134079	14.1	20.6	6.7	25.7	0	1.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_19164	NODE_40494_length_520_cov_14.655769	1.5	9.7	21.9	14.9	0	0	-3.9	0	cell.organisation	"ATMAP70-5 (microtubule-associated proteins 70-5); microtubule binding Encodes a microtubule associated protein (MAP70-5). Expressed in all tissues. similar to ATMAP70-3 (microtubule-associated proteins 70-3), microtubule binding [Arabidopsis thaliana] (T"
MSGI1_43097	NODE_4050_length_278_cov_19.636690	6.4	25.4	13.6	0.7	2	-4.3	0	5.2	not assigned.unknown	not assigned.unknown
MSGI1_86094	NODE_40506_length_152_cov_4.690790	3.8	1.2	12.1	0	0	-4.6	0	0	cell wall	"MYB20 (myb domain protein 20); DNA binding / transcription factor Encodes a putative transcription factor (MYB20). similar to MYB43 (myb domain protein 43), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G16600.1); similar to myb-rela"
MSGI1_86094	NODE_40506_length_152_cov_4.690790	3.8	1.2	12.1	0	0	-4.6	0	0	RNA.regulation of transcription.MYB domain transcription factor family	"MYB20 (myb domain protein 20); DNA binding / transcription factor Encodes a putative transcription factor (MYB20). similar to MYB43 (myb domain protein 43), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G16600.1); similar to myb-rela"
MSGI1_66701	NODE_40507_length_190_cov_12.421053	10.9	13.2	7.5	1.2	0	0	0	3.5	not assigned.unknown	not assigned.unknown
MSGI1_52097	NODE_40508_length_237_cov_22.059072	18.4	12.4	38.3	13.3	0	-1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_120952	NODE_40509_length_61_cov_31.213116	20	0.7	0	0	-4.8	0	5.3	0	not assigned.unknown	not assigned.unknown
MSGI1_42921	NODE_40510_length_279_cov_16.562723	10.7	8.6	0.3	0.1	0	0	5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_84178	NODE_40516_length_155_cov_21.458065	24.7	4.7	1.6	2.1	-2.4	0	3.9	0	misc.cytochrome P450	"CYP76C1 (cytochrome P450, family 76, subfamily C, polypeptide 1); heme binding / iron ion binding / monooxygenase cytochrome P450 monooxygenase Identical to Cytochrome P450 76C1 (EC 1.14.-.-) (CYP76C1) [Arabidopsis Thaliana] (GB:O64636;GB:O65783); simila"
MSGI1_38061	NODE_40522_length_306_cov_39.872547	25.7	44.6	74.1	17.2	0	-2.1	-1.5	1.4	not assigned.unknown	not assigned.unknown
MSGI1_120948	NODE_40544_length_61_cov_57.557377	11.2	9.5	38.3	7	0	-2.5	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_120947	NODE_40552_length_61_cov_34.360657	291.7	136.5	0	0	-1.1	0	9.2	8.1	not assigned.unknown	not assigned.unknown
MSGI1_88802	NODE_40553_length_148_cov_5.054054	1.2	0.8	7.2	12.2	0	0	0	-3.9	not assigned.unknown	not assigned.unknown
MSGI1_120946	NODE_40554_length_61_cov_46.770493	14.7	10.1	33.5	47.4	0	0	0	-2.2	tetrapyrrole synthesis.magnesium chelatase	GUN5 (GENOMES UNCOUPLED 5) Encodes magnesium chelatase involved in plastid-to-nucleus signal transduction. similar to Mg protoporphyrin IX chelatase [Nicotiana tabacum] (GB:AAB97152.1); similar to protoporphyrin IX:Mg Chelatase [Antirrhinum majus] (GB:CA
MSGI1_27570	NODE_40562_length_395_cov_11.081013	5.3	12	0	0.1	0	0	0	6.9	cell wall	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39000.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G28680.1); similar to protein kinase family protein [Arabidopsis t
MSGI1_27570	NODE_40562_length_395_cov_11.081013	5.3	12	0	0.1	0	0	0	6.9	signalling.receptor kinases.Catharanthus roseus-like RLK1	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39000.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G28680.1); similar to protein kinase family protein [Arabidopsis t
MSGI1_110626	NODE_40563_length_122_cov_6.639344	3.1	15.8	22	5.2	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_29790	NODE_40563_length_371_cov_19.013477	24.4	6.5	2.8	9.6	-1.9	0	3.1	0	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	lipase class 3 family protein  similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT2G30550.2); similar to Os01g0900400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045105.1); similar to putative DAD1 [Oryza sativa (japonica cult
MSGI1_98550	NODE_40567_length_135_cov_7.711111	0.3	0	13.9	8.2	0	0	-5.5	0	not assigned.unknown	not assigned.unknown
MSGI1_57486	NODE_40569_length_217_cov_13.327188	14.7	14.5	0.7	0.5	0	0	4.4	4.9	not assigned.unknown	not assigned.unknown
MSGI1_58078	NODE_40570_length_215_cov_13.069767	6.4	6.8	30.1	6	0	-2.3	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_104715	NODE_40576_length_128_cov_6.703125	0	0	12.3	12.5	0	0	-4.6	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_111641	NODE_40581_length_116_cov_30.060345	23.7	27.2	9.9	4.3	0	0	0	2.7	RNA.regulation of transcription.SNF7	SNF7 family protein  similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT5G04850.1); similar to putative CGI-34 protein [Oryza sativa (japonica cultivar-group)] (GB:BAB16321.1); similar to Os05g0102900 [Oryza sativa (japonica cultivar-group)] (G
MSGI1_76712	NODE_40594_length_168_cov_11.315476	13.3	2.8	0.6	0.4	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_106634	NODE_40597_length_126_cov_9.380953	1	0.9	13.8	0.3	0	-5.5	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_120935	NODE_40613_length_61_cov_25.360655	15.5	6.5	1.6	0	0	0	3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_72382	NODE_40615_length_177_cov_8.677966	8.9	20.4	9.4	4	0	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_39277	NODE_40618_length_299_cov_16.371237	11.3	9.7	38.4	14.1	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_106629	NODE_4066_length_126_cov_10.222222	10	17.4	0.3	0	0	0	0	5.1	not assigned.unknown	not assigned.unknown
MSGI1_79376	NODE_40662_length_163_cov_12.546012	22.7	12.2	5.6	3.4	0	0	2	0	stress.abiotic.drought/salt	"STT3B (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE B); oligosaccharyl transferase Encodes homolog of yeast STT3, a subunit of oligosaccharyltransferase. similar to STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A), oligosaccharyl transferase [Ara"
MSGI1_93091	NODE_40665_length_142_cov_11.232394	2.5	12.5	56.2	8.9	0	-2.7	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_23017	NODE_40669_length_456_cov_11.885965	10	6.3	29.7	1.9	0	-4	0	0	misc.cytochrome P450	"CYP81D3 (cytochrome P450, family 81, subfamily D, polypeptide 3); oxygen binding member of CYP81D similar to CYP81D2 (cytochrome P450, family 81, subfamily D, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37360.1); similar to CYP81D8 (c"
MSGI1_120925	NODE_40682_length_61_cov_38.344261	24.6	23.2	0	0	0	0	5.6	5.5	not assigned.unknown	not assigned.unknown
MSGI1_62625	NODE_40688_length_201_cov_8.124378	11.9	16.9	7	1.3	0	0	0	3.7	not assigned.unknown	not assigned.unknown
MSGI1_58724	NODE_40690_length_213_cov_8.849765	10.7	0.3	1.6	3.3	-5.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_68768	NODE_40698_length_185_cov_10.416216	19.2	11.2	1.2	2.4	0	0	4	0	not assigned.unknown	not assigned.unknown
MSGI1_36020	NODE_40704_length_320_cov_24.787500	23.2	81.4	119.5	45.7	1.8	-1.4	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_120922	NODE_40716_length_61_cov_42.754097	7.6	17.4	0	0	0	0	0	5.1	not assigned.unknown	not assigned.unknown
MSGI1_25609	NODE_40720_length_419_cov_17.334129	12.2	37.9	24.6	25.1	1.6	0	0	0	amino acid metabolism.synthesis.aromatic aa.phenylalanine.arogenate dehydratase / prephenate dehydratase	PD1 (PREPHENATE DEHYDRATASE 1); prephenate dehydratase  similar to prephenate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT1G08250.1); similar to prephenate dehydratase [Ipomoea trifida] (GB:AAS79603.1); contains InterPro domain Prephenate de
MSGI1_69666	NODE_40734_length_183_cov_15.524590	13.3	6.5	0	0.2	0	0	4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_97760	NODE_40735_length_136_cov_13.308824	13	13.3	0	0	0	0	4.7	4.7	protein.postranslational modification	"SGT1B (enhanced downy mildew 1b); binding Functions in plant disease resistance signaling,  SCF(TIR1) mediated degradation of Aux/IAA proteins and HSP90 mediated degradation of R resistance proteins. AtSGT1a and AtSGT1b are functionally redundant in the"
MSGI1_75684	NODE_40749_length_170_cov_7.011765	1.7	0.5	15.8	0	0	-5	-3.2	0	cell wall	"AtMYB74 (myb domain protein 74); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to ATM4/ATMYB102 (ARABIDOPSIS MYB-LIKE 102), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G21440.1); similar to N-6 A"
MSGI1_75684	NODE_40749_length_170_cov_7.011765	1.7	0.5	15.8	0	0	-5	-3.2	0	RNA.regulation of transcription.MYB domain transcription factor family	"AtMYB74 (myb domain protein 74); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to ATM4/ATMYB102 (ARABIDOPSIS MYB-LIKE 102), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G21440.1); similar to N-6 A"
MSGI1_73284	NODE_40755_length_175_cov_6.320000	111.7	4.6	3.5	1.5	-4.6	0	5	0	cell wall	"peroxidase, putative  Identical to Peroxidase 52 precursor (EC 1.11.1.7) (Atperox P52) (ATP49) (PER52) [Arabidopsis Thaliana] (GB:Q9FLC0); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to Peroxidase P7 (TP7) (GB:P0043"
MSGI1_73284	NODE_40755_length_175_cov_6.320000	111.7	4.6	3.5	1.5	-4.6	0	5	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 52 precursor (EC 1.11.1.7) (Atperox P52) (ATP49) (PER52) [Arabidopsis Thaliana] (GB:Q9FLC0); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to Peroxidase P7 (TP7) (GB:P0043"
MSGI1_80577	NODE_4076_length_161_cov_40.086956	41.1	38.2	94.8	78.2	0	0	-1.2	-1	not assigned.unknown	not assigned.unknown
MSGI1_88105	NODE_40760_length_149_cov_7.671141	0.2	0	6.5	17	0	0	0	-5.1	RNA.processing.splicing	"ATSC35 (Arabidopsis thaliana arginine/serine-rich splicing factor 35, 35 kDa protein); RNA binding encodes an SC35-like splicing factor of 35 kD localized to the nuclear specks. similar to SCL30a (SC35-like splicing factor 30a), RNA binding [Arabidop"
MSGI1_79970	NODE_40784_length_162_cov_4.487654	0	0	11.8	0	0	-4.6	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_97759	NODE_40790_length_136_cov_6.066176	2.5	2.1	13.3	0.5	0	-4.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_115752	NODE_40802_length_81_cov_36.703705	29.8	24.7	6.2	12	0	0	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_109618	NODE_40806_length_123_cov_4.455285	3.2	2.1	12.1	15	0	0	0	-2.8	signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase	phosphatidylinositol-4-phosphate 5-kinase family protein  Identical to Phosphatidylinositol-4-phosphate 5-kinase 7 (EC 2.7.1.68) (AtPIP5K7) (1-phosphatidylinositol-4-phosphate kinase 7) (PtdIns(4)P-5-kinase 7) (Diphosphoinositide kinase 7) (AtP5K2) (PIP5
MSGI1_88103	NODE_40818_length_149_cov_7.932886	0.5	0	23.1	2.4	0	-3.3	-5.5	0	not assigned.unknown	not assigned.unknown
MSGI1_47691	NODE_40860_length_256_cov_16.652344	18.9	24.8	3.5	3	0	0	2.4	3	not assigned.unknown	not assigned.unknown
MSGI1_18293	NODE_4088_length_533_cov_26.230770	3.3	27.6	1.5	14.1	3.1	3.2	0	0	misc.cytochrome P450	"CYP709B2 (cytochrome P450, family 709, subfamily B, polypeptide 2); oxygen binding member of CYP709B similar to CYP709B3 (cytochrome P450, family 709, subfamily B, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G27710.1); similar to CYP70"
MSGI1_58384	NODE_40883_length_214_cov_28.686916	34.1	13	10.1	6.9	0	0	1.8	0	cell wall	"glycosyl hydrolase family 17 protein  Identical to Putative glucan endo-1,3-beta-glucosidase 7 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 7) ((1->3)-beta-glucanase 7) (Beta- 1,3-endoglucanase 7) (Beta-1,3-glucanase 7) [Arabidopsis Thaliana"
MSGI1_31962	NODE_40898_length_351_cov_20.974360	19.5	23.1	12.5	4.5	0	0	0	2.4	cell wall	"phosphate-responsive protein, putative (EXO)  similar to PHI-1 (PHOSPHATE-INDUCED 1) [Arabidopsis thaliana] (TAIR:AT1G35140.1); similar to phi-1 [Nicotiana tabacum] (GB:BAA33810.1); contains InterPro domain Phosphate-induced protein 1 conserved region; ("
MSGI1_31962	NODE_40898_length_351_cov_20.974360	19.5	23.1	12.5	4.5	0	0	0	2.4	signalling.in sugar and nutrient physiology	"phosphate-responsive protein, putative (EXO)  similar to PHI-1 (PHOSPHATE-INDUCED 1) [Arabidopsis thaliana] (TAIR:AT1G35140.1); similar to phi-1 [Nicotiana tabacum] (GB:BAA33810.1); contains InterPro domain Phosphate-induced protein 1 conserved region; ("
MSGI1_44876	NODE_4090_length_269_cov_9.319702	0	0.1	4.7	24.3	0	2.4	0	-7.9	not assigned.unknown	not assigned.unknown
MSGI1_64803	NODE_40914_length_195_cov_5.025641	3.4	24.8	2.7	3.9	2.9	0	0	2.7	not assigned.unknown	not assigned.unknown
MSGI1_111085	NODE_40934_length_121_cov_38.173553	14.3	14.9	30.7	46.8	0	0	0	-1.7	OPP.oxidative PP.6-phosphogluconate dehydrogenase	6-phosphogluconate dehydrogenase family protein  similar to 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT1G64190.1); similar to 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT5G41670.2); s
MSGI1_72838	NODE_40935_length_176_cov_5.284091	0	0	14.8	7.4	0	0	-4.9	0	signalling.receptor kinases.thaumatin like	"PR5K (PR5-like receptor kinase); kinase/ transmembrane receptor protein serine/threonine kinase putative receptor serine/threonine kinase PR5K (PR5K) mRNA,  PR5-like receptor kinase similar to receptor serine/threonine kinase, putative [Arabidopsis thali"
MSGI1_72838	NODE_40935_length_176_cov_5.284091	0	0	14.8	7.4	0	0	-4.9	0	cell wall	"PR5K (PR5-like receptor kinase); kinase/ transmembrane receptor protein serine/threonine kinase putative receptor serine/threonine kinase PR5K (PR5K) mRNA,  PR5-like receptor kinase similar to receptor serine/threonine kinase, putative [Arabidopsis thali"
MSGI1_81136	NODE_40938_length_160_cov_16.137501	16.6	21.5	13.4	35.4	0	1.4	0	0	glycolysis.glyceraldehyde 3-phosphate dehydrogenase	"GAPCP-1; glyceraldehyde-3-phosphate dehydrogenase  similar to GAPCP-2, glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G16300.1); similar to glyceraldehyde-3-phosphate dehydrogenase [Capsicum annuum] (GB:CAC80377.1); contains Int"
MSGI1_21009	NODE_40949_length_484_cov_6.842975	6.5	8.6	26	17	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_25385	NODE_4095_length_422_cov_401.163513	81.2	273.1	73.7	188.8	1.7	1.4	0	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL12 (beta-galactosidase 12); beta-galactosidase putative beta-galactosidase similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis"
MSGI1_25385	NODE_4095_length_422_cov_401.163513	81.2	273.1	73.7	188.8	1.7	1.4	0	0	"misc.gluco-, galacto- and mannosidases"	"BGAL12 (beta-galactosidase 12); beta-galactosidase putative beta-galactosidase similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis"
MSGI1_59621	NODE_40955_length_210_cov_18.909523	11.8	36.8	2.9	20.9	1.6	2.8	0	0	Co-factor and vitamine metabolism.thiamine	Encodes ThiC involved in thiamine biosynthesis.    Translation of ThiC is regulated by a riboswitch in the 3' of untranslated region of the messenger RNA.  similar to putative thiamin biosynthesis protein [Oryza sativa] (GB:AAK26130.1); similar to thiamin
MSGI1_112637	NODE_40962_length_108_cov_72.185188	17.5	42.9	3.2	6.6	1.3	0	2.5	2.7	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	KNAT1 (BREVIPEDICELLUS 1); transcription factor A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem
MSGI1_120899	NODE_40969_length_61_cov_34.016392	13.1	23.7	0.4	0	0	0	5	5.6	lipid metabolism.lipid degradation.beta-oxidation.mutifunctional	"AIM1 (ABNORMAL INFLORESCENCE MERISTEM); enoyl-CoA hydratase Functions in beta-oxidation of fatty acids, similar to CuMFP with L-3-hydroxyacyl-CoA hydrolyase , L-3-hydroxyacyl-dehydrogenase, D-3-hydroxyacyl-CoA epimerase, and 3, 2-enoyl-CoA isomerase acti"
MSGI1_10348	NODE_4098_length_748_cov_43.127007	19.8	29.6	3.3	2.2	0	0	2.6	3.8	DNA.synthesis/chromatin structure	SYD (SPLAYED) Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral  homeotic gene expr
MSGI1_71015	NODE_40981_length_180_cov_6.283333	2.3	1.1	7.7	14.6	0	0	0	-3.7	not assigned.unknown	not assigned.unknown
MSGI1_120898	NODE_40981_length_61_cov_27.344263	15.3	0.2	4.4	2.5	-6.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_90159	NODE_40982_length_146_cov_5.260274	0.1	0.5	47	9.9	0	-2.2	-8.9	0	not assigned.unknown	not assigned.unknown
MSGI1_88101	NODE_4099_length_149_cov_41.275169	126.1	70	42.8	121.4	0	1.5	1.6	0	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L27A (RPL27aC)  Identical to 60S ribosomal protein L27a-3 (RPL27AC) [Arabidopsis Thaliana] (GB:P49637;GB:Q8LE80); similar to RPL27A (RIBOSOMAL PROTEIN L27A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G23290."
MSGI1_116914	NODE_41008_length_71_cov_30.253521	11.2	18.6	0	0	0	0	4.5	5.2	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 52 precursor (EC 1.11.1.7) (Atperox P52) (ATP49) (PER52) [Arabidopsis Thaliana] (GB:Q9FLC0); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to Peroxidase P7 (TP7) (GB:P0043"
MSGI1_99380	NODE_41016_length_134_cov_8.238806	7.2	3.4	13.4	1.3	0	-3.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_75681	NODE_41025_length_170_cov_19.076471	4.3	9.6	21.7	1.3	0	-4.1	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_71014	NODE_41027_length_180_cov_9.583333	7.3	3.6	21.4	3.8	0	-2.5	0	0	transport.peptides and oligopeptides	"proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G52190.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32296.1); sim"
MSGI1_45122	NODE_41027_length_268_cov_3.854478	0.3	13.7	0.3	7.5	5.5	0	0	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase, putative  similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to LOX1 (Lipoxygenase 1), lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G55020.1); similar to lipoxygenase, putati"
MSGI1_98541	NODE_41028_length_135_cov_27.303703	23.4	23.1	0	0	0	0	5.5	5.5	not assigned.unknown	not assigned.unknown
MSGI1_69219	NODE_41033_length_184_cov_4.972826	5.5	9.9	15.4	54.3	0	1.8	0	-2.5	cell wall	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_69219	NODE_41033_length_184_cov_4.972826	5.5	9.9	15.4	54.3	0	1.8	0	-2.5	stress.biotic	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_89494	NODE_41046_length_147_cov_4.829932	0.2	1.4	11.4	5.8	0	0	-5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_84172	NODE_41061_length_155_cov_14.258064	15.7	3.1	0	0	0	0	5	0	not assigned.unknown	not assigned.unknown
MSGI1_102878	NODE_41076_length_130_cov_9.923077	2.5	2.5	69.9	21.5	0	-1.7	-4.8	-3.1	development.unspecified	"ACD1 (ACCELERATED CELL DEATH 1, PHEOPHORBIDE A OXYGENASE) Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato"
MSGI1_28395	NODE_4108_length_386_cov_35.007771	70	79.8	75.4	182.5	0	1.3	0	-1.2	RNA.RNA binding	"ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circa"
MSGI1_17467	NODE_4108_length_548_cov_218.850372	75.5	92.8	295.2	133.8	0	-1.1	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_100207	NODE_41080_length_133_cov_61.300751	42	20	3.3	3.9	0	0	3.7	2.4	protein.synthesis.misc ribososomal protein	RPL34 (RIBOSOMAL PROTEIN L34); structural constituent of ribosome putative 60S ribosomal protein L34 Identical to 60S ribosomal protein L34-2 (RPL34B) [Arabidopsis Thaliana] (GB:Q9FE65); similar to 60S ribosomal protein L34 (RPL34A) [Arabidopsis thaliana]
MSGI1_62273	NODE_41089_length_202_cov_9.306931	3.7	10.1	34.9	5.3	0	-2.7	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_51066	NODE_41095_length_241_cov_20.145227	6.7	15.2	1.1	29.6	0	4.8	0	0	stress.abiotic.heat	heat shock protein-related  similar to ATP-dependent Clp protease ClpB protein-related [Arabidopsis thaliana] (TAIR:AT1G07200.2); similar to Os11g0104300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065527.1); similar to expressed protein [Oryza sat
MSGI1_117839	NODE_41106_length_64_cov_30.953125	22.2	5.3	0	0	-2.1	0	5.5	0	not assigned.unknown	not assigned.unknown
MSGI1_120888	NODE_4111_length_61_cov_48.114754	23.1	28.8	0	0	0	0	5.5	5.8	not assigned.unknown	not assigned.unknown
MSGI1_120887	NODE_41110_length_61_cov_5.721312	4.8	15.5	3.2	0.4	0	0	0	5.3	not assigned.unknown	not assigned.unknown
MSGI1_25250	NODE_41111_length_424_cov_13.591981	17.4	0.3	6.9	0.9	-5.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_65910	NODE_41121_length_192_cov_31.661459	18.2	15.5	5.4	1.6	0	0	0	3.3	not assigned.unknown	not assigned.unknown
MSGI1_85457	NODE_41123_length_153_cov_40.411766	40.5	5	8.2	1.9	-3	0	2.3	0	secondary metabolism.flavonoids.dihydroflavonols	UDP-glucoronosyl/UDP-glucosyl transferase family protein the glycosyltransferase (UGT72B1) is involved in metabolizing xenobiotica (chloroaniline and chlorophenole). Comparison between wild type and knock-out mutant demonstrates the central role of this g
MSGI1_114664	NODE_41125_length_91_cov_95.659340	29.8	7.8	4.2	2.6	-1.9	0	2.8	0	cell wall.cell wall proteins.AGPs	"FLA2 (FLA2) AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds Identical to Fasciclin-like arabinogalactan protein 2 precursor (FLA2) [Arabidopsis Thaliana] (GB:Q9SU13;GB:Q8L9T2;GB:Q9C5Q6); similar to FLA1 (F"
MSGI1_75679	NODE_41143_length_170_cov_5.670588	0	0	13.5	6.1	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_106618	NODE_41147_length_126_cov_3.158730	0	0	12.2	4.8	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_43457	NODE_41166_length_276_cov_4.228261	3.8	10.4	20.9	3.7	0	-2.5	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_113683	NODE_41188_length_100_cov_108.669998	83.4	255.3	55.4	136.6	1.6	1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_114315	NODE_41189_length_94_cov_36.414894	25.1	3.1	5.3	5.5	-3	0	2.2	0	cell wall.degradation.pectate lyases and polygalacturonases	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G41870.1); similar to Os05g0587000 [Oryz
MSGI1_120880	NODE_41194_length_61_cov_7.032787	9.1	18.9	9.2	3.7	0	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_41367	NODE_41199_length_287_cov_23.637630	20.1	39.6	22.9	70.4	0	1.6	0	0	"RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family"	LOB domain protein 39 / lateral organ boundaries domain protein 39 (LBD39)  Identical to LOB domain-containing protein 39 (LBD39) [Arabidopsis Thaliana] (GB:Q9SZE8;GB:Q8LBC9); similar to LOB domain protein 38 / lateral organ boundaries domain protein 38
MSGI1_11779	NODE_412_length_697_cov_28.195122	10.5	38.6	5.1	43.1	1.9	3.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_20430	NODE_4120_length_495_cov_65.254547	126	19.4	57.5	30.9	-2.7	0	1.1	0	nucleotide metabolism.degradation	"ATAPY2 (APYRASE 2) Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY1 causes a complete inhibition of pollen germination. similar to ATAPY1 (APYRASE 1), calmodulin binding [Arabidopsis thaliana] (T"
MSGI1_101129	NODE_41217_length_132_cov_61.439392	12.2	9.2	36.5	11.7	0	-1.6	-1.6	0	cell wall.degradation.pectate lyases and polygalacturonases	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT4G23500.1); similar to Glycoside hydrolas
MSGI1_112636	NODE_41234_length_108_cov_23.018518	21.1	3.3	6.3	1.8	-2.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_94619	NODE_41235_length_140_cov_6.985714	0	0	4.4	20.7	0	2.2	0	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_73774	NODE_41236_length_174_cov_4.396552	6.1	1	11.2	0.2	0	-5.8	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_73774	NODE_41236_length_174_cov_4.396552	6.1	1	11.2	0.2	0	-5.8	0	0	cell wall	"GAMMA-TIP (Tonoplast intrinsic protein (TIP) gamma); water channel encodes a tonoplast intrinsic protein, which functions as water channel. highly expressed in root, stem, cauline leaves and flowers. Identical to Aquaporin TIP1.1 (Tonoplast intrinsic pro"
MSGI1_73774	NODE_41236_length_174_cov_4.396552	6.1	1	11.2	0.2	0	-5.8	0	0	transport.Major Intrinsic Proteins.TIP	"GAMMA-TIP (Tonoplast intrinsic protein (TIP) gamma); water channel encodes a tonoplast intrinsic protein, which functions as water channel. highly expressed in root, stem, cauline leaves and flowers. Identical to Aquaporin TIP1.1 (Tonoplast intrinsic pro"
MSGI1_29789	NODE_41251_length_371_cov_8.690027	11.4	11.5	70.6	14.3	0	-2.3	-2.6	0	secondary metabolism.isoprenoids.tocopherol biosynthesis.hydroxyphenylpyruvate dioxygenase	"PDS1 (PHYTOENE DESATURATION 1) Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants. Identical to 4-hydroxyphenylpyruv"
MSGI1_29789	NODE_41251_length_371_cov_8.690027	11.4	11.5	70.6	14.3	0	-2.3	-2.6	0	amino acid metabolism.degradation.aromatic aa.tyrosine	"PDS1 (PHYTOENE DESATURATION 1) Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants. Identical to 4-hydroxyphenylpyruv"
MSGI1_17791	NODE_41259_length_542_cov_8.987085	12.4	0	0.4	0.1	-4.6	0	5	0	secondary metabolism.isoprenoids.terpenoids	terpene synthase/cyclase family protein  similar to lyase/ magnesium ion binding [Arabidopsis thaliana] (TAIR:AT4G16730.1); similar to 24349 (GB:AAD21414.1); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterP
MSGI1_61947	NODE_41262_length_203_cov_22.310345	15.8	22.7	2.4	3.2	0	0	2.7	2.8	transport.unspecified cations	organic cation transporter-related  similar to transporter-related [Arabidopsis thaliana] (TAIR:AT1G79360.1); similar to putative organic cation transporter [Oryza sativa (japonica cultivar-group)] (GB:BAC83382.1); contains InterPro domain Major facilitat
MSGI1_120873	NODE_41281_length_61_cov_35.803280	17.9	30.9	74.2	62.6	0	0	-2.1	-1	transport.p- and v-ATPases	"AHA5 (ARABIDOPSIS H(+)-ATPASE 5); ATPase  Identical to ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump 5) (AHA5) [Arabidopsis Thaliana] (GB:Q9SJB3); similar to AHA1 (PLASMA MEMBRANE PROTON ATPASE), ATPase [Arabidopsis thaliana] (TAIR:AT2G18960.1"
MSGI1_28040	NODE_41287_length_390_cov_28.723078	17.3	8.4	2.6	8.1	0	0	2.7	0	cell wall	"ATLP-1 (Arabidopsis thaumatin-like protein 1) encodes a thaumatin-like protein Identical to Thaumatin-like protein precursor [Arabidopsis Thaliana] (GB:P50699;GB:Q9LM26); similar to thaumatin-like protein, putative / pathogenesis-related protein, putativ"
MSGI1_28040	NODE_41287_length_390_cov_28.723078	17.3	8.4	2.6	8.1	0	0	2.7	0	stress.biotic	"ATLP-1 (Arabidopsis thaumatin-like protein 1) encodes a thaumatin-like protein Identical to Thaumatin-like protein precursor [Arabidopsis Thaliana] (GB:P50699;GB:Q9LM26); similar to thaumatin-like protein, putative / pathogenesis-related protein, putativ"
MSGI1_91625	NODE_41288_length_144_cov_54.638889	26.3	0.1	14.2	2	-8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_32093	NODE_413_length_350_cov_10.951428	8.3	0.3	28.1	0.4	0	-6.1	0	0	secondary metabolism.wax	"CER1 (ECERIFERUM 1) Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also l"
MSGI1_115374	NODE_41305_length_84_cov_15.297619	6.3	11.1	0.3	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_42363	NODE_41310_length_282_cov_34.570923	5	26.1	2.3	18.7	2.4	3	0	0	transport.phosphate	PHO1 (PHOSPHATE 1) mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains. Identical
MSGI1_107581	NODE_41315_length_125_cov_8.664000	0.9	1.8	13.6	15.1	0	0	-3.9	-3.1	not assigned.unknown	not assigned.unknown
MSGI1_55261	NODE_41315_length_225_cov_17.457777	1.4	18.4	1	4.6	3.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_89492	NODE_41316_length_147_cov_4.952381	6.9	9.7	25.9	6.8	0	-1.9	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_105639	NODE_41318_length_127_cov_21.700787	19.3	65.6	30.2	71.4	1.8	1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_100202	NODE_41325_length_133_cov_34.571430	31.5	18.5	283.1	81.1	0	-1.8	-3.2	-2.1	protein.degradation	"SCPL48 (serine carboxypeptidase-like 48); serine carboxypeptidase  similar to SCPL47 (serine carboxypeptidase-like 47), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G22980.1); similar to SCPL49 (serine carboxypeptidase-like 49), serine carboxy"
MSGI1_53125	NODE_41327_length_233_cov_6.236052	0	0	3.5	14.5	0	0	0	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_76168	NODE_41329_length_169_cov_13.846154	34.3	11.7	3.6	7.4	-1.6	0	3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_90895	NODE_41349_length_145_cov_12.765517	12.5	11.3	9.2	29	0	1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_78261	NODE_41374_length_165_cov_29.545454	22.9	20.5	5.8	11.8	0	0	2	0	stress.biotic	"ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19); ATPase, coupled to transmembrane movement of substances / auxin efflux transporter Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates"
MSGI1_78261	NODE_41374_length_165_cov_29.545454	22.9	20.5	5.8	11.8	0	0	2	0	transport.ABC transporters and multidrug resistance systems	"ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19); ATPase, coupled to transmembrane movement of substances / auxin efflux transporter Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates"
MSGI1_120863	NODE_41378_length_61_cov_14.081967	7.3	10.8	0	0	0	0	0	4.4	not assigned.unknown	not assigned.unknown
MSGI1_85453	NODE_4138_length_153_cov_37.385620	0	0	41.6	84.7	0	1	-6.4	-7.4	not assigned.unknown	not assigned.unknown
MSGI1_91622	NODE_41400_length_144_cov_4.965278	0.6	0.7	9.5	12.2	0	0	0	-4.1	not assigned.unknown	not assigned.unknown
MSGI1_37302	NODE_41417_length_311_cov_36.787781	34.6	11.4	13.9	14	-1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_50888	NODE_41440_length_242_cov_9.144629	10.7	26.1	55.9	11.1	0	-2.3	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_97746	NODE_41441_length_136_cov_15.205882	14.9	15.4	2	1.8	0	0	2.9	3.1	not assigned.unknown	not assigned.unknown
MSGI1_44875	NODE_41441_length_269_cov_45.992565	54.3	4.6	7.9	4.9	-3.6	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_110608	NODE_41450_length_122_cov_17.532787	14.9	9.2	0	0	0	0	4.9	0	stress.abiotic.drought/salt	ERD4 (EARLY-RESPONSIVE TO DEHYDRATION 4)  similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT1G32090.1); similar to Os07g0150100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058898.1); sim
MSGI1_82941	NODE_41451_length_157_cov_20.057325	12.8	20.4	3.3	3.2	0	0	0	2.7	not assigned.unknown	not assigned.unknown
MSGI1_113308	NODE_41455_length_103_cov_99.572815	21.4	28.7	3.3	3.1	0	0	2.7	3.2	not assigned.unknown	not assigned.unknown
MSGI1_10010	NODE_41470_length_761_cov_27.287779	4.8	25	3.8	25.2	2.4	2.7	0	0	gluconeogenese/ glyoxylate cycle.PEPCK	"phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putative Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent). Identical to Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP carboxykinase)"
MSGI1_48998	NODE_41473_length_250_cov_12.388000	8.4	12.2	2	0.2	0	0	0	5.9	not assigned.unknown	not assigned.unknown
MSGI1_91621	NODE_41478_length_144_cov_7.743055	4.1	5	21.1	8.3	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_29409	NODE_41491_length_375_cov_16.664000	14.7	24.1	0.1	0	0	0	7.2	5.6	not assigned.unknown	not assigned.unknown
MSGI1_28202	NODE_41497_length_388_cov_7.123711	6.9	12.9	3.7	1.1	0	0	0	3.6	not assigned.unknown	not assigned.unknown
MSGI1_120852	NODE_41503_length_61_cov_24.852459	17.5	11	0	0	0	0	5.1	4.5	not assigned.unknown	not assigned.unknown
MSGI1_12462	NODE_41514_length_675_cov_7.300741	4.8	24.2	10.4	7.5	2.3	0	0	0	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  Identical to RING-H2 finger protein ATL5H precursor (ATL5H) [Arabidopsis Thaliana] (GB:Q8LGA5); similar to ATL6 (Arabidopsis T?xicos en Levadura 6), protein binding / zinc ion binding [Arabidopsis thal"
MSGI1_120848	NODE_41530_length_61_cov_17.377048	23.3	18.2	2.8	3.7	0	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_76164	NODE_4154_length_169_cov_21.183432	3.7	3.4	13.5	19	0	0	0	-2.5	not assigned.unknown	not assigned.unknown
MSGI1_104692	NODE_41540_length_128_cov_9.937500	10.2	11.9	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_72832	NODE_41545_length_176_cov_10.454545	7.7	5.4	44.8	2.5	0	-4.2	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_120847	NODE_41548_length_61_cov_17.229507	10.3	16.2	0	0	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_38225	NODE_41558_length_305_cov_20.134426	13.4	19.1	37.3	11.5	0	-1.7	0	0	stress.abiotic.heat	"DNAJ heat shock protein, putative  similar to DNAJ heat shock N-terminal domain-containing protein (J11) [Arabidopsis thaliana] (TAIR:AT4G36040.1); similar to DnaJ-like protein [Phaseolus vulgaris] (GB:AAB36543.1); contains InterPro domain Heat shock pro"
MSGI1_44495	NODE_41566_length_271_cov_8.863468	3.8	9.9	37.8	9.6	0	-2	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_5295	NODE_41577_length_1030_cov_15.263106	26	1	7.2	1.5	-4.7	0	1.9	0	RNA.regulation of transcription.C2H2 zinc finger family	ZFP3 (ZINC FINGER PROTEIN 3); nucleic acid binding / transcription factor/ zinc ion binding Encodes a zinc finger protein containing only a single zinc finger. Identical to Zinc finger protein 3 (ZFP3) [Arabidopsis Thaliana] (GB:Q39262); similar to zinc
MSGI1_78790	NODE_416_length_164_cov_219.920731	107.6	61.8	57.7	10.3	0	-2.5	0	2.6	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY70 (WRKY DNA-binding protein 70); transcription factor member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of  JA-signaling is partly
MSGI1_93870	NODE_41613_length_141_cov_10.851064	0.2	10.5	0.2	5.5	5.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_58073	NODE_41646_length_215_cov_22.395350	6.7	25.8	23.6	18.3	1.9	0	0	0	protein.postranslational modification	"TOPP4 (Type one serine/threonine protein phosphatase 4); protein phosphatase type 1 Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers. Identical to Serine/threonine-protein phosphatase PP"
MSGI1_67122	NODE_41657_length_189_cov_11.428572	16.8	1.8	5	3	-3.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_71012	NODE_4169_length_180_cov_82.705559	24.4	66.4	169.8	35.9	1.4	-2.2	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_15475	NODE_4169_length_591_cov_67.456856	115.2	76.2	57.6	80.4	0	0	1	0	RNA.RNA binding	"nuclear RNA-binding protein (RGGA)  similar to nuclear RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G47210.1); similar to nuclear RNA binding protein A [Spinacia oleracea] (GB:AAF14244.1); contains InterPro domain Hyaluronan/mRNA binding"
MSGI1_22111	NODE_4170_length_468_cov_49.814102	0	0	48.8	98.5	0	1	-6.6	-7.6	not assigned.unknown	not assigned.unknown
MSGI1_78260	NODE_41737_length_165_cov_5.084848	3.4	18.7	1.7	9.3	2.5	0	0	0	cell.organisation	"microtubule motor  similar to ATK4 (ARABIDOPSIS THALIANA KINESIN 4), microtubule motor [Arabidopsis thaliana] (TAIR:AT5G27000.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT3G44730.1); similar to kinesin motor protein-related"
MSGI1_36413	NODE_4175_length_317_cov_117.788643	9.9	60.3	17.6	29.4	2.6	0	0	0	cell wall	gibberellin-regulated family protein  similar to ATEPR1 (Arabidopsis thaliana extensin proline-rich 1) [Arabidopsis thaliana] (TAIR:AT2G27380.1); similar to hypothetical protein [Brassica napus var. napus] (GB:AAS68179.1); contains InterPro domain Pistil-
MSGI1_36413	NODE_4175_length_317_cov_117.788643	9.9	60.3	17.6	29.4	2.6	0	0	0	hormone metabolism.gibberelin.induced-regulated-responsive-activated	gibberellin-regulated family protein  similar to ATEPR1 (Arabidopsis thaliana extensin proline-rich 1) [Arabidopsis thaliana] (TAIR:AT2G27380.1); similar to hypothetical protein [Brassica napus var. napus] (GB:AAS68179.1); contains InterPro domain Pistil-
MSGI1_11020	NODE_4176_length_723_cov_10.473029	3.7	13.9	0.1	0.8	0	0	0	4.1	not assigned.unknown	not assigned.unknown
MSGI1_107570	NODE_41770_length_125_cov_7.552000	0.7	15.1	16.2	23.4	4.4	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_95397	NODE_41785_length_139_cov_8.863309	6.8	6.1	4.9	21.8	0	2.2	0	0	DNA.synthesis/chromatin structure	"EMB1968 (EMBRYO DEFECTIVE 1968); ATPase  similar to replication factor C 40 kDa, putative [Arabidopsis thaliana] (TAIR:AT1G63160.1); similar to Os12g0176500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066296.1); similar to replication factor C 37"
MSGI1_12827	NODE_4181_length_663_cov_23.488688	5	5	53.2	5.8	0	-3.2	-3.4	0	RNA.regulation of transcription.MYB-related transcription factor family	myb family transcription factor  similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G37260.1); similar to putative At5g37260 [Lycopersicon peruvianum] (GB:AAX44338.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012
MSGI1_84170	NODE_41819_length_155_cov_4.419355	0	0	11.7	9.5	0	0	-4.5	0	RNA.regulation of transcription.SET-domain transcriptional regulator family	"SET domain-containing protein  similar to EFS (EARLY FLOWERING IN SHORT DAYS) [Arabidopsis thaliana] (TAIR:AT1G77300.2); similar to Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases (ISS) [Ostreococcus tauri] (GB:CA"
MSGI1_120843	NODE_41822_length_61_cov_19.606558	2.6	13.7	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_120842	NODE_41838_length_61_cov_22.934425	1.7	15.3	3.2	10.7	3.2	0	0	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	"basic helix-loop-helix (bHLH) family protein  similar to ILR3 (IAA-LEUCINE RESISTANT3), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G54680.1); similar to Prefoldin; Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE93168.1)"
MSGI1_112147	NODE_41854_length_112_cov_18.741072	5	23	19.5	23.3	2.2	0	0	0	transport.nucleotides	"ATPUP3 (Arabidopsis thaliana purine permease 3); purine transporter Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. si"
MSGI1_42918	NODE_41884_length_279_cov_9.573477	15.1	0.3	0.1	0.1	-5.7	0	7.2	0	stress.abiotic.unspecified	allergen V5/Tpx-1-related family protein  similar to allergen V5/Tpx-1-related family protein [Arabidopsis thaliana] (TAIR:AT4G25790.1); similar to STS14 protein precursor (GB:Q41495); contains InterPro domain Allergen V5/Tpx-1 related; (InterPro:IPR00128
MSGI1_39275	NODE_4189_length_299_cov_181.043472	48	25.8	6.3	10.4	0	0	2.9	0	protein.synthesis.misc ribososomal protein	"EMB3010 (EMBRYO DEFECTIVE 3010); structural constituent of ribosome  Identical to 40S ribosomal protein S6-2 (RPS6B) [Arabidopsis Thaliana] (GB:P51430;GB:O04670;GB:Q9LX91); similar to RPS6 (RIBOSOMAL PROTEIN S6), structural constituent of ribosome [Arabi"
MSGI1_57819	NODE_41926_length_216_cov_6.430555	9.2	2.5	51.2	11.2	0	-2.2	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_90888	NODE_41939_length_145_cov_4.827586	0.1	0	9	11	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_23388	NODE_41955_length_451_cov_9.086474	6.5	12.8	0	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_56380	NODE_41956_length_221_cov_8.796380	1.2	1.3	15.3	20.1	0	0	-3.7	-4	not assigned.unknown	not assigned.unknown
MSGI1_84169	NODE_41974_length_155_cov_5.051613	0.7	5.4	13.3	3	0	0	-4.2	0	misc.UDP glucosyl and glucoronyl transferases	"UDP-glucose glucosyltransferase, putative  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22360.1); similar to transcription factor/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (T"
MSGI1_23458	NODE_41981_length_450_cov_13.095555	3.9	21.1	4.8	10.3	2.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_57182	NODE_4203_length_218_cov_193.247711	132.7	75	68.2	88.6	0	0	1	0	mitochondrial electron transport / ATP synthesis.F1-ATPase	"ATP synthase beta chain, mitochondrial, putative  Identical to ATP synthase subunit beta-3, mitochondrial precursor (EC 3.6.3.14) [Arabidopsis Thaliana] (GB:Q9C5A9); similar to ATP synthase beta chain 1, mitochondrial [Arabidopsis thaliana] (TAIR:AT5G086"
MSGI1_61233	NODE_42036_length_205_cov_27.258537	14.3	13.9	0.2	0	0	0	6.2	4.8	not assigned.unknown	not assigned.unknown
MSGI1_42570	NODE_4205_length_281_cov_144.135239	125.8	113.6	59.3	73.5	0	0	1.1	0	DNA.synthesis/chromatin structure	"NAP1;3 (NUCLEOSOME ASSEMBLY PROTEIN1;3); DNA binding  similar to NAP1,1 (NUCLEOSOME ASSEMBLY PROTEIN1,1), DNA binding [Arabidopsis thaliana] (TAIR:AT4G26110.1); similar to nucleosome assembly protein I-like protein; similar to mouse nap I, PIR Accession"
MSGI1_59036	NODE_42078_length_212_cov_4.358490	0	0	15.3	10.5	0	0	-4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_46850	NODE_42099_length_260_cov_17.080769	12.1	19.5	5.4	3.6	0	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_23564	NODE_42115_length_448_cov_6.044643	1.6	7.9	15.7	5	0	0	-3.3	0	protein.degradation.AAA type	"AAA-type ATPase family protein  similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT4G28000.1); similar to ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G52882.1); similar to AAA ATPase,"
MSGI1_31960	NODE_42127_length_351_cov_25.988604	11.1	11.9	31.1	6.1	0	-2.4	0	0	cell wall.precursor synthesis.UGE	UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1); UDP-glucose 4-epimerase/ protein dimerization Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate.
MSGI1_82307	NODE_4216_length_158_cov_17.101265	28.3	26.9	6.9	23.1	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_80562	NODE_42184_length_161_cov_9.906833	1.1	0.3	17.5	22.8	0	0	-4	-6.2	not assigned.unknown	not assigned.unknown
MSGI1_103781	NODE_42207_length_129_cov_5.038760	27.4	0.9	13.3	6.1	-4.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_101120	NODE_42284_length_132_cov_37.401516	45.3	33.2	0.8	0.3	0	0	5.8	6.8	protein.synthesis.misc ribososomal protein	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27); structural constituent of ribosome Arabidopsis ribosomal protein Identical to 40S ribosomal protein S27-2 (RPS27B) [Arabidopsis Thaliana] (GB:Q9M2F1;GB:Q9ZNS3); similar to 40S ribosomal protein S27 (RPS27A) [Ara
MSGI1_100191	NODE_42286_length_133_cov_4.962406	10.2	34.9	31.3	7.5	1.8	-2.1	0	2.2	not assigned.unknown	not assigned.unknown
MSGI1_86759	NODE_42287_length_151_cov_4.980133	12.2	7.3	38.5	14.2	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_75163	NODE_42293_length_171_cov_4.573100	5.4	20.4	5.2	3.9	0	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_62271	NODE_4231_length_202_cov_55.782177	0	0.2	83.7	106.4	0	0	-7.4	-9.1	not assigned.unknown	not assigned.unknown
MSGI1_82934	NODE_42311_length_157_cov_22.477707	9	23.3	0	0	0	0	0	5.5	not assigned.unknown	not assigned.unknown
MSGI1_76162	NODE_42325_length_169_cov_8.449704	1.6	0.3	5.3	17.9	0	0	0	-5.9	not assigned.unknown	not assigned.unknown
MSGI1_110598	NODE_42346_length_122_cov_5.983606	0	0	11.9	13.4	0	0	-4.6	-4.7	hormone metabolism.auxin.induced-regulated-responsive-activated	"similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G64600.1); similar to putative auxin-independent growth promoter [Oryza sativa (japonica cultivar-group)] (GB:BAD37235.1); contains InterPro domain Protein of unknown function DUF246, plant; (I"
MSGI1_92338	NODE_42356_length_143_cov_10.048951	40.4	11.7	7.4	5.7	-1.8	0	2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_120826	NODE_4238_length_61_cov_107.475410	20.1	36.5	16.8	4.1	0	0	0	3.2	not assigned.unknown	not assigned.unknown
MSGI1_101116	NODE_42382_length_132_cov_4.431818	1.2	1.4	14.3	11.2	0	0	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_118145	NODE_42394_length_62_cov_11.967742	0	0	11.1	16.7	0	0	0	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_80561	NODE_42436_length_161_cov_4.732919	0.7	1.1	3.9	12.4	0	0	0	-3.5	not assigned.unknown	not assigned.unknown
MSGI1_110597	NODE_42450_length_122_cov_3.450820	0	0	11.9	6.8	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_31847	NODE_4249_length_352_cov_9.661932	0.3	0.6	14	15.8	0	0	-5.5	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_71397	NODE_42510_length_179_cov_4.921788	1	5.2	14.4	2.7	0	0	-3.8	0	transport.amino acids	ATPTR2-B (NITRATE TRANSPORTER 1); transporter Encodes a peptide transport gene that mediates the transport of di- and tripeptides. Identical to Peptide transporter PTR2 (Histidine-transporting protein) (PTR2) [Arabidopsis Thaliana] (GB:P46032); similar t
MSGI1_71397	NODE_42510_length_179_cov_4.921788	1	5.2	14.4	2.7	0	0	-3.8	0	transport.peptides and oligopeptides	ATPTR2-B (NITRATE TRANSPORTER 1); transporter Encodes a peptide transport gene that mediates the transport of di- and tripeptides. Identical to Peptide transporter PTR2 (Histidine-transporting protein) (PTR2) [Arabidopsis Thaliana] (GB:P46032); similar t
MSGI1_99369	NODE_42519_length_134_cov_5.358209	0.3	0.4	7.7	12.1	0	0	0	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_63017	NODE_42528_length_200_cov_3.315000	1	13.4	6.1	6.3	3.7	0	0	0	protein.degradation.ubiquitin.E3.RING	ATL6 (Arabidopsis T?xicos en Levadura 6); protein binding / zinc ion binding Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). Identical to RING-H2 finger protein ATL3B precursor (RING-H2 finger protein ATL6) (ATL3B) [Arabidopsis Thaliana] (GB:
MSGI1_36998	NODE_42559_length_313_cov_9.939297	1.8	12	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_41775	NODE_42594_length_285_cov_9.277193	12	0.4	2.8	5.5	-4.9	0	0	0	misc.cytochrome P450	"CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15); oxygen binding putative cytochrome P450 similar to CYP72A14 (cytochrome P450, family 72, subfamily A, polypeptide 14), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14680.1); similar t"
MSGI1_84168	NODE_426_length_155_cov_31.425806	11.8	0.7	17.1	0.2	-4.1	-6.4	0	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT5G46890.1); similar to P-rich protein EIG-I30 [Nicotiana tab
MSGI1_68758	NODE_4260_length_185_cov_283.129730	43.8	169.5	54	42.5	2	0	0	2	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5); DNA binding / transcription factor/ transcriptional activator encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-5). The protein contains
MSGI1_68758	NODE_4260_length_185_cov_283.129730	43.8	169.5	54	42.5	2	0	0	2	hormone metabolism.ethylene.signal transduction	ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5); DNA binding / transcription factor/ transcriptional activator encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-5). The protein contains
MSGI1_14716	NODE_42602_length_611_cov_10.577742	5.3	10.9	0	0.1	0	0	0	6.8	not assigned.unknown	not assigned.unknown
MSGI1_84167	NODE_42604_length_155_cov_4.329032	0.3	0.4	12.2	13	0	0	-5.3	-5	not assigned.unknown	not assigned.unknown
MSGI1_72827	NODE_42634_length_176_cov_18.267046	8.9	14.2	0.8	1.5	0	0	0	3.2	not assigned.unknown	not assigned.unknown
MSGI1_24763	NODE_42639_length_430_cov_8.051163	14.1	1.5	7.8	1.6	-3.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_107558	NODE_42657_length_125_cov_10.632000	61.3	29.8	28.7	24.5	-1	0	1.1	0	cell wall.pectin*esterases.PME	ATPME1 (Arabidopsis thaliana pectin methylesterase 1); pectinesterase encodes a pectin methylesterase Identical to Pectinesterase-1 precursor (EC 3.1.1.11) (Pectin methylesterase 1) (PE 1) (PME1) [Arabidopsis Thaliana] (GB:Q43867); similar to pectinester
MSGI1_39793	NODE_4268_length_296_cov_42.945946	75.9	40.6	18.6	80.8	0	2.1	2	-1	protein.synthesis.misc ribososomal protein	60S ribosomal protein L4/L1 (RPL4A)  Identical to 60S ribosomal protein L4-1 (L1) (RPL4A) [Arabidopsis Thaliana] (GB:Q9SF40); similar to 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] (TAIR:AT5G02870.1); similar to putative 60S ribosomal prot
MSGI1_86756	NODE_42698_length_151_cov_4.894040	0	0	11.2	5.4	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_108569	NODE_42701_length_124_cov_4.975806	4	1.8	24.7	0.5	0	-5.6	-2.6	0	redox.thioredoxin	"ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1); thiol-disulfide exchange intermediate Encodes a single cysteine active site thioredoxin-related protein, similar to thioredoxin H-type from Arabidopsis thaliana SP:P29448, Nicotiana tabacum"
MSGI1_67961	NODE_42718_length_187_cov_10.058824	6.3	11.6	0.2	0	0	0	0	4.5	RNA.regulation of transcription.WRKY domain transcription factor family	TTR1 (WRKY domain family protein 16); transcription factor Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. Identical to Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16)
MSGI1_67961	NODE_42718_length_187_cov_10.058824	6.3	11.6	0.2	0	0	0	0	4.5	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G11250.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thal"
MSGI1_110592	NODE_42721_length_122_cov_3.065574	4.3	10	30	8.5	0	-1.8	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_71900	NODE_42746_length_178_cov_25.426966	27.8	24.4	0	0	0	0	5.8	5.6	protein.folding	"chaperonin, putative  similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G11830.1); similar to chaperonin containing TCP1, subunit 2 (beta) [Gallus gallus] (GB:NP_001012551.1); similar to Protein kinase; GroEL-like chaperone, ATPase [Medicag"
MSGI1_116088	NODE_42758_length_78_cov_14.333333	13.6	16.1	3.2	2.5	0	0	0	2.7	not assigned.unknown	not assigned.unknown
MSGI1_3714	NODE_42782_length_1211_cov_13.056977	2.4	18.1	0.6	4.9	2.9	0	0	0	secondary metabolism.flavonoids.flavonols.dihydrokaempferol 4-reductase	"dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family  similar to DFR (DIHYDROFLAVONOL 4-REDUCTASE), dihydrokaempferol 4-reductase [Arabidopsis thaliana] (TAIR:AT5G42800.1); similar to vestitone reductase (GB:AAB41550.1); contains Int"
MSGI1_93858	NODE_42786_length_141_cov_76.241135	44.1	5.1	10.1	1.7	-3.1	0	2.1	0	cell wall.modification	"EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4); hydrolase, acting on glycosyl bonds EXGT-A4, endoxyloglucan transferase, Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 5 precursor (EC 2.4.1.207) (At-XTH5) (XTH-5) (XTH5) [Arabidopsis Tha"
MSGI1_65902	NODE_42798_length_192_cov_5.401042	0	0	10.4	12.5	0	0	0	-4.6	cell.cycle.peptidylprolyl isomerase	"ROF1 (ROTAMASE FKBP 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase Encodes a a high molecular weight member of the FK506 binding protein (FKBP) family.  It has three FKBP12-like domains, tetratricopeptide repeats, and a puta"
MSGI1_92334	NODE_42831_length_143_cov_10.356644	11	0.1	6.2	0.7	-6.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_65901	NODE_42854_length_192_cov_10.625000	6.5	14.6	1	1	0	0	0	3.9	not assigned.unknown	not assigned.unknown
MSGI1_17626	NODE_42855_length_545_cov_16.658716	22.3	5	4.9	4	-2.2	0	2.2	0	cell wall	ATEP3 (Arabidopsis thaliana chitinase class IV); chitinase encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and g
MSGI1_17626	NODE_42855_length_545_cov_16.658716	22.3	5	4.9	4	-2.2	0	2.2	0	stress.biotic	ATEP3 (Arabidopsis thaliana chitinase class IV); chitinase encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and g
MSGI1_71899	NODE_42857_length_178_cov_9.033708	0.3	0.6	20	13.9	0	0	-6.1	-4.5	fermentation.PDC	pyruvate decarboxylase family protein  similar to CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) [Arabidopsis thaliana] (TAIR:AT3G48560.1); similar to Os01g0505400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043144.1); similar to COG0028: Thiamine
MSGI1_90144	NODE_4286_length_146_cov_20.328768	3.2	2	42.7	7.8	0	-2.5	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_51061	NODE_42869_length_241_cov_8.381742	11.2	40.3	21.6	10.3	1.8	0	0	2	protein.degradation.ubiquitin.E3.RING	zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G14200.1); similar to Os03g0324900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049982.1); similar t
MSGI1_111307	NODE_42873_length_119_cov_33.512604	26.9	19.8	0	0	0	0	5.7	5.3	lipid metabolism.lipid degradation.lysophospholipases.phosphoinositide phospholipase C	"phosphoinositide-specific phospholipase C, putative  similar to phosphoinositide-specific phospholipase C family protein [Arabidopsis thaliana] (TAIR:AT2G40116.1); similar to ATPLC2 (PHOSPHOLIPASE C 2), phospholipase C [Arabidopsis thaliana] (TAIR:AT3G08"
MSGI1_111307	NODE_42873_length_119_cov_33.512604	26.9	19.8	0	0	0	0	5.7	5.3	signalling.phosphinositides.phosphoinositide phospholipase C	"phosphoinositide-specific phospholipase C, putative  similar to phosphoinositide-specific phospholipase C family protein [Arabidopsis thaliana] (TAIR:AT2G40116.1); similar to ATPLC2 (PHOSPHOLIPASE C 2), phospholipase C [Arabidopsis thaliana] (TAIR:AT3G08"
MSGI1_110588	NODE_42874_length_122_cov_40.155739	33.1	73.9	12.7	15.3	1.2	0	0	2.3	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	PAL2 (phenylalanine ammonia-lyase 2); phenylalanine ammonia-lyase Encodes phenylalanine lyase. Identical to Phenylalanine ammonia-lyase 2 (EC 4.3.1.5) (PAL2) [Arabidopsis Thaliana] (GB:P45724;GB:Q53ZM9;GB:Q8RWP4;GB:Q94KC9;GB:Q9SCN5); similar to PAL3 (PHE
MSGI1_65544	NODE_42880_length_193_cov_44.362694	44.6	44.7	0	0.2	0	0	6.5	7.8	not assigned.unknown	not assigned.unknown
MSGI1_117202	NODE_42881_length_69_cov_26.507246	14.5	1.5	27	21.7	-3.3	0	0	-3.9	not assigned.unknown	not assigned.unknown
MSGI1_120817	NODE_42902_length_61_cov_31.114754	19.4	25	0	0	0	0	5.3	5.6	protein.degradation	ATAPP1 (aminopeptidase P1) Arabidopsis aminopeptidase P1 similar to aminopeptidase [Arabidopsis thaliana] (TAIR:AT3G05350.1); similar to Xaa-Pro aminopeptidase 2 [Solanum lycopersicum] (GB:CAC59824.1); similar to metallopeptidase family M24 containing pr
MSGI1_65900	NODE_42911_length_192_cov_8.744792	9.2	11.1	0	0	0	0	0	4.5	cell.organisation	ATKINESIN-13A/KINESIN-13A; microtubule motor Kinesin-13A localized to entire Golgi stacks. Involved in trichome development. similar to kinesin motor family protein [Arabidopsis thaliana] (TAIR:AT3G16060.1); similar to central motor kinesin 1 [Gossypium
MSGI1_117201	NODE_42930_length_69_cov_37.057972	26.4	38.5	0	0	0	0	5.7	6.3	not assigned.unknown	not assigned.unknown
MSGI1_52906	NODE_42933_length_234_cov_12.884615	1.5	18.6	13.2	3.9	3.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_100185	NODE_42935_length_133_cov_51.233082	46.6	90.6	9	17.8	0	0	2.4	2.3	cell wall.cell wall proteins.AGPs	FLA12 (fasciclin-like arabinogalactan-protein 12)  Identical to Fasciclin-like arabinogalactan protein 12 precursor (FLA12) [Arabidopsis Thaliana] (GB:Q8LEE9;GB:Q94EG7;GB:Q9FKJ8); similar to FLA11 (fasciclin-like arabinogalactan-protein 11) [Arabidopsis t
MSGI1_95382	NODE_42960_length_139_cov_3.748201	0	0	11.9	8	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_93067	NODE_4297_length_142_cov_5.647887	4.7	11.8	4.1	0.7	0	0	0	4.1	not assigned.unknown	not assigned.unknown
MSGI1_120814	NODE_42984_length_61_cov_81.459015	54.5	51.6	0.8	0	0	0	6.1	6.7	not assigned.unknown	not assigned.unknown
MSGI1_69655	NODE_4300_length_183_cov_5.912568	2.4	45.9	1.8	14.6	4.3	3	0	1.7	not assigned.unknown	not assigned.unknown
MSGI1_83531	NODE_43005_length_156_cov_61.525642	27.9	12.5	4.9	3	0	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_25607	NODE_43018_length_419_cov_15.933174	13.2	43.3	1.9	0.7	1.7	0	0	6	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT3G53980.2); similar to hypothetical protein [Plantago major]
MSGI1_116913	NODE_43024_length_71_cov_36.971832	22.9	19.1	0.4	0.8	0	0	5.8	4.6	not assigned.unknown	not assigned.unknown
MSGI1_120809	NODE_43043_length_61_cov_60.852459	16.4	37.8	7.2	13.2	0	0	0	1.5	stress.biotic	"pathogenesis-related thaumatin family protein  similar to thaumatin, putative [Arabidopsis thaliana] (TAIR:AT4G38660.1); similar to Thaumatin, pathogenesis-related [Medicago truncatula] (GB:ABE92056.1); contains InterPro domain Thaumatin, pathogenesis-re"
MSGI1_90139	NODE_43057_length_146_cov_7.815069	3.7	9	34.3	9.7	0	-1.8	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_108566	NODE_43069_length_124_cov_7.693548	8	12.3	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_90879	NODE_43082_length_145_cov_3.531034	0.1	0.9	13.4	10.2	0	0	-7.1	0	not assigned.unknown	not assigned.unknown
MSGI1_75673	NODE_4309_length_170_cov_15.217647	0.1	0.4	34.1	8.5	0	-2	-8.4	0	not assigned.unknown	not assigned.unknown
MSGI1_38851	NODE_43104_length_301_cov_35.790699	19.6	3.1	22.2	2.9	-2.7	-2.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_112274	NODE_43106_length_111_cov_90.126129	38.7	13.4	32.3	32.8	-1.5	0	0	0	tetrapyrrole synthesis.magnesium chelatase	"CHLI2; magnesium chelatase encodes a second Chl I gene (CHLI2), a subunit of magnesium chelatase which is required for chlorophyll biosynthesis.  Protein not detectable in wild type and is targeted for rapid degradation in vivo. similar to CHLI1 (CHLORIN"
MSGI1_103773	NODE_43131_length_129_cov_4.178295	14.6	0	13	9.2	-4.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_108563	NODE_43133_length_124_cov_33.830647	16.6	11.1	32.3	9.8	0	-1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_33931	NODE_4315_length_335_cov_112.355225	64.1	68.2	24.2	43.6	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_93064	NODE_4316_length_142_cov_72.267609	10	16.1	42.4	24.2	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_67960	NODE_43160_length_187_cov_22.700535	16.8	13.1	1.8	1.4	0	0	3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_116699	NODE_4317_length_73_cov_54.671234	11.6	17.7	12	64.5	0	2.4	0	-1.9	stress.abiotic.unspecified	allergen V5/Tpx-1-related family protein  similar to allergen V5/Tpx-1-related family protein [Arabidopsis thaliana] (TAIR:AT5G57625.1); similar to Pathogenesis-related protein PR-1 precursor (GB:Q40374); contains InterPro domain Ves allergen; (InterPro:I
MSGI1_16026	NODE_43174_length_577_cov_13.019064	10.4	36.8	20.3	30.1	1.8	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_16026	NODE_43174_length_577_cov_13.019064	10.4	36.8	20.3	30.1	1.8	0	0	0	transport.sulphate	"AST91 (SULFATE TRANSPORTER 91); sulfate transporter Encodes AST91 mRNA for sulfate transporter. Identical to Probable sulfate transporter 3.3 (AST91) (SULTR3;3) [Arabidopsis Thaliana] (GB:Q9SXS2;GB:O49307); similar to SULTR3,4 (SULTR3,4), sulfate transpo"
MSGI1_78254	NODE_43182_length_165_cov_9.860606	3.4	6.3	28.8	6.9	0	-2.1	-3.1	0	cell wall.precursor synthesis.UGE	RHD1 (ROOT HAIR DEFECTIVE 1) Encodes a protein with UDP-D-glucose 4-epimerase activity. Mutants in RHD1 have abnormally shaped root hairs with a bulbous region at the base. Allelic to REB1 encoding a UDP-D-glucose 4-epimerase involved in cell wall biosyn
MSGI1_114551	NODE_43189_length_92_cov_54.554348	20	40.4	48.7	28	0	0	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_81687	NODE_43208_length_159_cov_52.610062	25.2	15.8	2.2	1.1	0	0	3.5	3.8	cell wall.precursor synthesis.UXS	"UXS6; catalytic  similar to UXS5 (UDP-Xyl synthase 5), catalytic [Arabidopsis thaliana] (TAIR:AT3G46440.2); similar to UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE) [Arabidopsis thaliana] (TAIR:AT5G59290.2); similar to UDP-glucuronic acid decarboxylase 3 [Pop"
MSGI1_69653	NODE_43223_length_183_cov_4.027322	33.9	5	6	4.1	-2.8	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_39273	NODE_43248_length_299_cov_17.204014	21.4	0.8	5.1	2.5	-4.7	0	2.1	0	misc.UDP glucosyl and glucoronyl transferases	UDP-glucoronosyl/UDP-glucosyl transferase family protein The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flav
MSGI1_39273	NODE_43248_length_299_cov_17.204014	21.4	0.8	5.1	2.5	-4.7	0	2.1	0	secondary metabolism.flavonoids.dihydroflavonols	UDP-glucoronosyl/UDP-glucosyl transferase family protein The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flav
MSGI1_79362	NODE_43260_length_163_cov_4.625767	0	0	1.7	11.7	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_104678	NODE_43263_length_128_cov_4.125000	6.2	10.4	53.9	9.3	0	-2.5	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_93062	NODE_4330_length_142_cov_12.126760	29.8	1.4	16.5	1.7	-4.4	-3.3	0	0	DNA.repair	methyladenine glycosylase family protein  similar to methyladenine glycosylase family protein [Arabidopsis thaliana] (TAIR:AT5G44680.1); similar to Methyladenine glycosylase [Medicago truncatula] (GB:ABE81339.1); contains InterPro domain Methyladenine gly
MSGI1_60553	NODE_4332_length_207_cov_9.768116	33	6.8	6.9	9.5	-2.3	0	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_33172	NODE_43370_length_341_cov_18.214077	12.2	22.3	45.7	8.5	0	-2.4	-1.9	0	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	"protein phosphatase 2C, putative / PP2C, putative  similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT1G07430.1); similar to protein phosphatase 2C [Nicotiana tabacum] (GB:CAC10358.1); contains InterPro domain Pro"
MSGI1_52090	NODE_4339_length_237_cov_9.620254	0	0	8.5	24.9	0	0	0	-5.6	not assigned.unknown	not assigned.unknown
MSGI1_95380	NODE_43392_length_139_cov_7.985611	0.1	0.5	11.7	16	0	0	-6.9	-5	misc.cytochrome P450	"CYP72A10 (cytochrome P450, family 72, subfamily A, polypeptide 10); oxygen binding putative cytochrome P450 similar to CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14690.1); similar t"
MSGI1_50411	NODE_43398_length_244_cov_15.635246	16.6	1.6	7.8	0.3	-3.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_38850	NODE_4340_length_301_cov_21.916943	9.5	13.8	39.4	17.1	0	0	-2.1	0	development.unspecified	"ACD1 (ACCELERATED CELL DEATH 1, PHEOPHORBIDE A OXYGENASE) Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato"
MSGI1_120789	NODE_43407_length_61_cov_16.409836	1.3	0.9	7.6	16.5	0	0	0	-4.2	not assigned.unknown	not assigned.unknown
MSGI1_111084	NODE_43413_length_121_cov_37.966942	50.9	17.2	58.9	19.8	-1.6	-1.6	0	0	secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA reductase	"HMG1 (3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE) Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in l"
MSGI1_17018	NODE_43419_length_557_cov_9.062837	15.2	24.2	0.2	0.3	0	0	6.2	6.3	not assigned.unknown	not assigned.unknown
MSGI1_60266	NODE_43428_length_208_cov_5.043269	2.5	4.4	28.9	4.7	0	-2.6	-3.5	0	transport.ABC transporters and multidrug resistance systems	ABC transporter family protein  Identical to White-brown complex homolog protein 23 (WBC23) [Arabidopsis Thaliana] (GB:Q93YS4;GB:Q94EX0;GB:Q9FG17); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G52310.1); similar to Putative AB
MSGI1_67114	NODE_43440_length_189_cov_11.253968	13.1	47.8	0.4	0	1.9	0	5	6.6	not assigned.unknown	not assigned.unknown
MSGI1_113682	NODE_43441_length_100_cov_13.020000	1.7	23.8	4.2	28.8	3.8	2.8	0	0	protein.degradation.subtilases	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_120788	NODE_43442_length_61_cov_4.573771	2.6	55.2	10	62.2	4.4	2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_70540	NODE_43445_length_181_cov_10.602210	11.7	21	8.6	4.3	0	0	0	2.3	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G26580.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE89318.1); contains InterPro domain Zinc fi"
MSGI1_79957	NODE_4347_length_162_cov_6.339506	0.4	0.7	18.3	0.7	0	-4.7	-5.5	0	protein.degradation.metalloprotease	"S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly"
MSGI1_115373	NODE_4347_length_84_cov_40.333332	21.7	16.5	0.7	8.7	0	0	5	0	not assigned.unknown	not assigned.unknown
MSGI1_37299	NODE_43476_length_311_cov_45.093246	33	104.2	20.3	10.6	1.7	0	0	3.3	protein.postranslational modification	"CIPK4 (CBL-INTERACTING PROTEIN KINASE 4); kinase CBL-interacting protein kinase similar to CIPK7 (CBL-INTERACTING PROTEIN KINASE 7), kinase [Arabidopsis thaliana] (TAIR:AT3G23000.1); similar to CBL-interacting protein kinase 5 [Populus trichocarpa] (GB:A"
MSGI1_64070	NODE_43515_length_197_cov_3.928934	22.9	5.5	7.9	7	-2.1	0	0	0	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	zinc finger (GATA type) family protein  Identical to GATA transcription factor 4 (AtGATA-4) (GATA4) [Arabidopsis Thaliana] (GB:O49743); similar to zinc finger (GATA type) family protein [Arabidopsis thaliana] (TAIR:AT2G45050.1); similar to AG-motif bindi
MSGI1_81683	NODE_43518_length_159_cov_8.056603	4.8	22.3	11.9	2.5	2.2	0	0	3.2	RNA.processing.ribonucleases	"CCR4-NOT transcription complex protein, putative  similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT5G22250.1); similar to CCR4 associated factor 1-related protein [Capsicum annuum] (GB:ABG66307.1); contains Inter"
MSGI1_33534	NODE_4353_length_338_cov_24.275148	1.9	4.9	3.2	35.1	0	3.5	0	-2.8	major CHO metabolism.synthesis.starch.AGPase	"APL3 (large subunit of AGP 3) Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isof"
MSGI1_95377	NODE_43533_length_139_cov_8.690647	20.8	25.8	2.4	3.3	0	0	3.1	3	not assigned.unknown	not assigned.unknown
MSGI1_74667	NODE_43548_length_172_cov_18.715117	5.9	21.5	31.7	5	0	-2.7	-2.4	2.1	not assigned.unknown	not assigned.unknown
MSGI1_35309	NODE_43566_length_325_cov_31.639999	30.4	7.2	3.5	3.4	-2.1	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_15029	NODE_43580_length_603_cov_26.990049	18.5	38.8	167	97.4	0	0	-3.2	-1.3	stress.biotic	"secretory protein, putative  similar to plant basic secretory protein (BSP) family protein [Arabidopsis thaliana] (TAIR:AT2G15130.1); similar to NtPRp27 [Nicotiana tabacum] (GB:BAA81904.1); contains InterPro domain Plant Basic Secretory Protein; (InterPr"
MSGI1_34524	NODE_43608_length_331_cov_13.099698	13.9	21.4	11.1	4.8	0	0	0	2.2	not assigned.unknown	not assigned.unknown
MSGI1_97734	NODE_43615_length_136_cov_46.698528	24.7	15.2	100.8	5.3	0	-4.2	-2	0	protein.degradation.cysteine protease	"cysteine proteinase, putative  similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G48350.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (Int"
MSGI1_52358	NODE_43626_length_236_cov_40.813560	30.7	45.4	35.3	17.7	0	0	0	1.4	not assigned.unknown	not assigned.unknown
MSGI1_120777	NODE_43628_length_61_cov_35.508198	10.8	9	19.1	36.7	0	0	0	-2	minor CHO metabolism.myo-inositol.InsP Synthases	"MI-1-P SYNTHASE (Myo-inositol-1-phosphate synthase); inositol-3-phosphate synthase Columbia myo-inositol-1-phosphate synthase mRNA, complete Identical to Inositol-3-phosphate synthase isozyme 1 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 1) (MI-1-P"
MSGI1_105616	NODE_43637_length_127_cov_4.480315	0.6	1	14.5	9.1	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_54188	NODE_43641_length_229_cov_4.187773	4.4	2.7	22.8	9.7	0	0	-2.4	0	protein.degradation.ubiquitin.E3.SCF.FBOX	"FKF1 (FLAVIN-BINDING KELCH DOMAIN F BOX PROTEIN); ubiquitin-protein ligase flavin-binding kelch domain F box protein, is clock-controlled, regulates transition to flowering Identical to Adagio protein 3 (Flavin-binding kelch repeat F-box protein 1) (F-bo"
MSGI1_49677	NODE_43649_length_247_cov_25.813765	18	0.4	12.7	1.8	-5.5	0	0	0	misc.short chain dehydrogenase/reductase (SDR)	short-chain dehydrogenase/reductase (SDR) family protein  similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G26770.1); similar to Os03g0299200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049848.1);
MSGI1_68751	NODE_43663_length_185_cov_12.810811	7.6	10.9	0	0	0	0	0	4.4	not assigned.unknown	not assigned.unknown
MSGI1_43262	NODE_43676_length_277_cov_23.877256	6.3	8.4	24.8	5.5	0	-2.2	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_104670	NODE_43680_length_128_cov_5.164062	5.4	3.5	23.4	10.9	0	0	-2.1	0	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT2G16870.1); similar to regulator of chromosome condensation (RCC1) family protein [Arabidopsis th"
MSGI1_49676	NODE_43681_length_247_cov_9.862349	9.1	14.8	33.7	30	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_117565	NODE_43704_length_66_cov_47.818180	27.6	27.6	57.1	64.1	0	0	0	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_28298	NODE_43705_length_387_cov_8.571059	15.5	0.3	2.5	0.7	-5.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_113681	NODE_43718_length_100_cov_23.730000	11.3	28.9	8.5	31	0	1.9	0	0	cell wall.cellulose synthesis.COBRA	"COBL4/IRX6 (COBRA-LIKE4); hydrolase, hydrolyzing O-glycosyl compounds / polysaccharide binding Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduc"
MSGI1_101099	NODE_43721_length_132_cov_47.060608	22.6	7.5	66.9	37.1	0	0	-1.6	-2.3	not assigned.unknown	not assigned.unknown
MSGI1_69648	NODE_4373_length_183_cov_7.327869	1.1	1.1	21.5	1.2	0	-4.2	-4.3	0	not assigned.unknown	not assigned.unknown
MSGI1_105615	NODE_43736_length_127_cov_4.188976	0.7	4.5	18.3	10.4	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_120770	NODE_43739_length_61_cov_18.704918	22.8	4	2.8	0.4	-2.5	0	3	0	secondary metabolism.flavonoids.dihydroflavonols	UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01420.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thali
MSGI1_86747	NODE_43741_length_151_cov_4.754967	12.2	0.9	2.1	1.4	-3.8	0	0	0	Co-factor and vitamine metabolism.coenzyme M.2-hydroxyacid dehydrogenase	oxidoreductase family protein  similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G12550.1); similar to hydroxyphenylpyruvate reductase (HPPR) [Solenostemon scutellarioides] (GB:CAD47810.2); contains InterPro domain D-isomer specifi
MSGI1_86747	NODE_43741_length_151_cov_4.754967	12.2	0.9	2.1	1.4	-3.8	0	0	0	amino acid metabolism.degradation.serine-glycine-cysteine group.glycine	oxidoreductase family protein  similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G12550.1); similar to hydroxyphenylpyruvate reductase (HPPR) [Solenostemon scutellarioides] (GB:CAD47810.2); contains InterPro domain D-isomer specifi
MSGI1_86747	NODE_43741_length_151_cov_4.754967	12.2	0.9	2.1	1.4	-3.8	0	0	0	misc.misc2	oxidoreductase family protein  similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G12550.1); similar to hydroxyphenylpyruvate reductase (HPPR) [Solenostemon scutellarioides] (GB:CAD47810.2); contains InterPro domain D-isomer specifi
MSGI1_31846	NODE_43748_length_352_cov_15.187500	7.4	18.8	1.6	3.4	0	0	0	2.5	not assigned.unknown	not assigned.unknown
MSGI1_120769	NODE_43750_length_61_cov_52.622952	14.7	10.2	0	0	0	0	4.9	0	OPP.non-reductive PP.transketolase	"transketolase, putative  similar to transketolase, putative [Arabidopsis thaliana] (TAIR:AT2G45290.1); similar to transketolase 1 [Capsicum annuum] (GB:CAA75777.1); similar to Transketolase, chloroplast precursor (TK) (GB:Q43848); similar to Transketolas"
MSGI1_120769	NODE_43750_length_61_cov_52.622952	14.7	10.2	0	0	0	0	4.9	0	PS.calvin cyle.transketolase	"transketolase, putative  similar to transketolase, putative [Arabidopsis thaliana] (TAIR:AT2G45290.1); similar to transketolase 1 [Capsicum annuum] (GB:CAA75777.1); similar to Transketolase, chloroplast precursor (TK) (GB:Q43848); similar to Transketolas"
MSGI1_46248	NODE_43767_length_263_cov_11.859316	13.8	0.1	0.9	0.6	-7.1	0	3.9	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_16531	NODE_43770_length_567_cov_12.994709	9.7	32.7	16.3	18.3	1.8	0	0	0	transport.amino acids	"AAP6 (AMINO ACID PERMEASE 6); amino acid permease Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem. similar to AAP1 (AMINO ACID PERMEASE 1), amino acid permeas"
MSGI1_120767	NODE_43784_length_61_cov_78.622948	13.6	17.1	52.3	18.1	0	-1.5	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_3693	NODE_43801_length_1214_cov_20.069193	14	16.7	45	24.5	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_120765	NODE_43821_length_61_cov_6.704918	17.9	3.8	0	0	0	0	5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_20889	NODE_43825_length_486_cov_43.666668	29.9	39.4	37.1	5.7	0	-2.7	0	2.8	cell wall	"GATL10 (Galacturonosyltransferase-like 10); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring hexosyl groups Encodes a protein with  putative galacturonosyltransferase activity. similar to GATL9/LGT8 (Galacturonosyltransferas"
MSGI1_20889	NODE_43825_length_486_cov_43.666668	29.9	39.4	37.1	5.7	0	-2.7	0	2.8	minor CHO metabolism.raffinose family.galactinol synthases.putative	"GATL10 (Galacturonosyltransferase-like 10); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring hexosyl groups Encodes a protein with  putative galacturonosyltransferase activity. similar to GATL9/LGT8 (Galacturonosyltransferas"
MSGI1_53936	NODE_4384_length_230_cov_7.482609	0.5	3.3	11.8	2.2	0	0	-4.6	0	RNA.regulation of transcription.GRAS transcription factor family	scarecrow transcription factor family protein  similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G29060.1); similar to SCARECROW-like protein [Lilium lon (GB:BAC77269.2); contains InterPro domain GRAS transcription f
MSGI1_86072	NODE_43848_length_152_cov_3.697368	4.6	2.7	14.1	1.2	0	-3.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_87438	NODE_43862_length_150_cov_11.660000	7.2	24.6	53	19.5	0	-1.4	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_14347	NODE_4387_length_620_cov_18.716129	2.5	8.9	21.9	11.8	0	0	-3.1	0	cell wall	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein  similar to harpin-induced family protein / HIN1 family protein / harpin-responsive family protein [Arabidopsis thaliana] (TAIR:AT3G44220.1); similar to Hairpin-induced
MSGI1_89470	NODE_43881_length_147_cov_4.251701	2.8	5.3	36.5	1.4	0	-4.7	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_87437	NODE_43892_length_150_cov_7.086667	0	0	18.2	16.4	0	0	-5.2	-5	not assigned.unknown	not assigned.unknown
MSGI1_73265	NODE_43894_length_175_cov_18.102858	5.2	12.5	6.6	37.7	0	2.5	0	-1.6	protein.synthesis.initiation	"ZLL (ZWILLE) Translation initiation factor. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Identical t"
MSGI1_77721	NODE_43904_length_166_cov_25.656626	26.5	0.9	3.9	3.5	-4.9	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_84813	NODE_43921_length_154_cov_39.935066	25.2	8.1	0.5	1.2	0	0	5.7	0	cell wall	"glycosyl hydrolase family 17 protein  Identical to Putative glucan endo-1,3-beta-glucosidase 7 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 7) ((1->3)-beta-glucanase 7) (Beta- 1,3-endoglucanase 7) (Beta-1,3-glucanase 7) [Arabidopsis Thaliana"
MSGI1_92324	NODE_43931_length_143_cov_27.531469	33.3	18.4	23.1	62.2	0	1.4	0	-1.8	protein.folding	"ATP binding / protein binding / unfolded protein binding  similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT1G26230.1); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G13470.1); similar to CPN60B (CHAPERONIN 60 BETA), ATP bi"
MSGI1_81681	NODE_43934_length_159_cov_6.232705	4.3	19.7	4.4	2.5	0	0	0	3	not assigned.unknown	not assigned.unknown
MSGI1_120760	NODE_43938_length_61_cov_43.229507	13.1	22.1	0	0	0	0	4.7	5.5	not assigned.unknown	not assigned.unknown
MSGI1_116297	NODE_43942_length_76_cov_39.460526	21.8	14.1	10	30.1	0	1.6	0	0	minor CHO metabolism.others	"L-galactose dehydrogenase (L-GalDH) Encodes a L-galactose dehydrogenase, involved in ascorbate biosynthesis similar to AGD2 (ARF-GAP DOMAIN 2), aldo-keto reductase [Arabidopsis thaliana] (TAIR:AT1G60680.1); similar to galactose dehydrogenase [Actinidia d"
MSGI1_63011	NODE_43962_length_200_cov_10.290000	13.8	2	15.8	1.5	0	-3.4	0	0	secondary metabolism.wax	"very-long-chain fatty acid condensing enzyme, putative  Identical to 3-ketoacyl-CoA synthase 5 (EC 2.3.1.-) (KCS-5) (Very-long-chain fatty acid condensing enzyme 5) (VLCFA condensing enzyme 5) (KCS5) [Arabidopsis Thaliana] (GB:Q9C6L5;GB:Q84W57;GB:Q8L8L0)"
MSGI1_52903	NODE_43972_length_234_cov_25.675213	12.9	6.9	17.8	2.9	0	-2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_111453	NODE_43979_length_118_cov_15.754237	15.9	9.3	2.5	7.3	0	0	2.7	0	protein.folding	"HSP60 (Heat shock protein 60); ATP binding / protein binding / unfolded protein binding mitochondrial chaperonin HSP. assist in  rapid assembly of the oligomeric protein structures in the mitochondria. Identical to Chaperonin CPN60, mitochondrial precurs"
MSGI1_111453	NODE_43979_length_118_cov_15.754237	15.9	9.3	2.5	7.3	0	0	2.7	0	stress.abiotic.heat	"HSP60 (Heat shock protein 60); ATP binding / protein binding / unfolded protein binding mitochondrial chaperonin HSP. assist in  rapid assembly of the oligomeric protein structures in the mitochondria. Identical to Chaperonin CPN60, mitochondrial precurs"
MSGI1_66266	NODE_44011_length_191_cov_29.780106	13.5	38	21	21.9	1.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_114313	NODE_44015_length_94_cov_79.585106	60.4	46.6	121.1	239	0	1	0	-2.4	tetrapyrrole synthesis.magnesium chelatase	GUN5 (GENOMES UNCOUPLED 5) Encodes magnesium chelatase involved in plastid-to-nucleus signal transduction. similar to Mg protoporphyrin IX chelatase [Nicotiana tabacum] (GB:AAB97152.1); similar to protoporphyrin IX:Mg Chelatase [Antirrhinum majus] (GB:CA
MSGI1_35466	NODE_44016_length_324_cov_12.737655	5	17.1	0	0	0	0	0	5.1	not assigned.unknown	not assigned.unknown
MSGI1_114974	NODE_44020_length_88_cov_32.477272	50.9	19.5	21.9	11.1	-1.4	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_98498	NODE_44022_length_135_cov_12.807407	11.6	13.1	0.2	0	0	0	5.9	4.7	not assigned.unknown	not assigned.unknown
MSGI1_23834	NODE_44028_length_443_cov_17.936794	10.5	17.6	38.1	6.1	0	-2.6	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_115293	NODE_44030_length_85_cov_134.835297	37.9	15.2	9	16.9	0	0	2.1	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L28 (RPL28A)  Identical to 60S ribosomal protein L28-1 (RPL28A) [Arabidopsis Thaliana] (GB:O82204); similar to 60S ribosomal protein L28 (RPL28C) [Arabidopsis thaliana] (TAIR:AT4G29410.2); similar to unknown [Solanum tuberosum] (GB:A
MSGI1_45117	NODE_44048_length_268_cov_21.037313	2.7	17.7	10.3	13.7	2.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_43901	NODE_44056_length_274_cov_9.171533	9.8	19.5	38.5	17.8	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_120746	NODE_44061_length_61_cov_99.229507	61	23	29.5	40.8	-1.4	0	1	0	"RNA.regulation of transcription.HSF,Heat-shock transcription factor family"	LIL3:1; transcription factor Encodes Lil3:1 (light-harvesting-like) protein.  Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.  A
MSGI1_59033	NODE_44074_length_212_cov_23.608490	16.6	6.7	32.2	5.7	0	-2.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_120745	NODE_44079_length_61_cov_27.836065	17.9	8.1	0	0.4	0	0	5.2	0	protein.synthesis.misc ribososomal protein	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome Encodes a cytoplasmic ribosomal protein. Identical to 60S ribosomal protein L3-1 (Protein EMBRYO DEFECTIVE 2207) (ARP1) [Arabidopsis Thaliana] (GB:P17094;GB:O82401;GB:Q42055;GB:Q9
MSGI1_56098	NODE_44082_length_222_cov_12.788288	9.4	16.9	0.3	0.9	0	0	0	4.2	transport.unspecified cations	organic cation transporter-related  similar to transporter-related [Arabidopsis thaliana] (TAIR:AT1G79360.1); similar to putative organic cation transporter [Oryza sativa (japonica cultivar-group)] (GB:BAC83382.1); contains InterPro domain Major facilitat
MSGI1_64794	NODE_44092_length_195_cov_17.271795	3.3	17.5	1.1	1	0	0	0	4.1	not assigned.unknown	not assigned.unknown
MSGI1_108543	NODE_44130_length_124_cov_54.435482	70.5	26.8	59.3	46.9	-1.4	0	0	0	tetrapyrrole synthesis.magnesium chelatase	"CHLI1 (CHLORINA 42); magnesium chelatase Encodes the CHLI subunit of magnesium chelatase which is required for chlorophyll biosynthesis. Identical to Magnesium-chelatase subunit chlI, chloroplast precursor (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase) (P"
MSGI1_58376	NODE_44147_length_214_cov_20.602804	5.5	22.9	5.6	4.4	2.1	0	0	2.4	development.unspecified	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_58376	NODE_44147_length_214_cov_20.602804	5.5	22.9	5.6	4.4	2.1	0	0	2.4	RNA.regulation of transcription.GRAS transcription factor family	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_66683	NODE_44152_length_190_cov_16.026316	9.8	3	34.4	7.2	0	-2.3	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_46246	NODE_44156_length_263_cov_7.577947	10.7	5.3	36.8	1.7	0	-4.4	-1.8	0	protein.degradation.cysteine protease	"cysteine proteinase, putative  similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G48350.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (Int"
MSGI1_94594	NODE_44166_length_140_cov_33.792858	36.6	77.7	315.9	107	1.1	-1.6	-3.1	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT5G05960.1); similar to hypothetical protein [Plantago major]
MSGI1_68359	NODE_44167_length_186_cov_5.241935	0	0	4.7	12	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_36701	NODE_44184_length_315_cov_29.536509	23.4	20.8	5.4	16.5	0	0	2.1	0	RNA.regulation of transcription.C2H2 zinc finger family	zinc finger (C2H2 type) family protein  similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT1G75710.1); similar to H0814G11.16 [Oryza sativa (indica cultivar-group)] (GB:CAJ86349.1); similar to CAA30374.1 protein [Oryza sativ
MSGI1_92316	NODE_44188_length_143_cov_4.216783	51.7	12.3	19.1	9.3	-2.1	0	1.4	0	cell wall	"peroxidase 30 (PER30) (P30) (PRXR9)  Identical to Peroxidase 30 precursor (EC 1.11.1.7) (Atperox P30) (PRXR9) (ATP7a) (PER30) [Arabidopsis Thaliana] (GB:Q9LSY7;GB:Q43737;GB:Q96521); similar to RCI3 (RARE COLD INDUCIBLE GENE 3), peroxidase [Arabidopsis th"
MSGI1_92316	NODE_44188_length_143_cov_4.216783	51.7	12.3	19.1	9.3	-2.1	0	1.4	0	misc.peroxidases	"peroxidase 30 (PER30) (P30) (PRXR9)  Identical to Peroxidase 30 precursor (EC 1.11.1.7) (Atperox P30) (PRXR9) (ATP7a) (PER30) [Arabidopsis Thaliana] (GB:Q9LSY7;GB:Q43737;GB:Q96521); similar to RCI3 (RARE COLD INDUCIBLE GENE 3), peroxidase [Arabidopsis th"
MSGI1_97723	NODE_44203_length_136_cov_4.816176	12.2	4.7	29.1	7.4	0	-2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_71888	NODE_44216_length_178_cov_8.078651	2.3	12.3	16.5	1.1	0	-3.9	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_52633	NODE_44216_length_235_cov_9.825532	7.6	18.3	1.1	2.2	0	0	0	3.1	protein.postranslational modification	protein kinase family protein  similar to protein kinase family protein / peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G51940.1); similar to Protein kinase [Medicago truncatula] (GB:ABE87818.1); contains InterPro do
MSGI1_91597	NODE_44226_length_144_cov_8.875000	14.6	7.4	16.4	1	0	-4	0	0	signalling.calcium	"TCH2 (TOUCH 2); calcium ion binding Encodes a protein with 40% similarity to calmodulin. Binds Ca(2+) and, as a consequence, undergoes conformational changes. CML24 expression occurs in all major organs, and transcript levels are increased from 2- to 15-"
MSGI1_84155	NODE_44235_length_155_cov_15.212903	3.7	16	0	0	0	0	0	5	RNA.regulation of transcription.GRAS transcription factor family	scarecrow transcription factor family protein  similar to scarecrow-like transcription factor 14 (SCL14) [Arabidopsis thaliana] (TAIR:AT1G07530.1); similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G07520.1); similar
MSGI1_84155	NODE_44235_length_155_cov_15.212903	3.7	16	0	0	0	0	0	5	development.unspecified	scarecrow transcription factor family protein  similar to scarecrow-like transcription factor 14 (SCL14) [Arabidopsis thaliana] (TAIR:AT1G07530.1); similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G07520.1); similar
MSGI1_60262	NODE_44237_length_208_cov_8.081731	11.8	10.9	0.2	0.7	0	0	5.9	0	mitochondrial electron transport / ATP synthesis.alternative oxidase	"AOX1A (alternative oxidase 1A); alternative oxidase Encodes an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without e"
MSGI1_51058	NODE_44250_length_241_cov_16.286306	10.3	26.2	8.8	30.1	0	1.8	0	0	misc.misc2	"formamidase, putative / formamide amidohydrolase, putative  similar to formamidase, putative / formamide amidohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G37560.1); similar to Os01g0764900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044346"
MSGI1_82294	NODE_44251_length_158_cov_3.139241	0	0	13.5	6.4	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_110572	NODE_44268_length_122_cov_2.450820	14.8	4.1	1.9	3.6	0	0	3	0	not assigned.unknown	not assigned.unknown
MSGI1_117200	NODE_44275_length_69_cov_124.971016	67.4	26.2	17.2	20.5	-1.4	0	2	0	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit JP650 precursor (Aromatic-rich glycoprotein JP650) (JP650) [Arabidopsis Thaliana] (GB:P92990;GB:O64599;GB:Q8H7B8;GB:Q93ZQ4); simil"
MSGI1_113304	NODE_4428_length_103_cov_56.330097	0.7	8	69.3	6.8	0	-3.3	-6.6	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP2 (ARABIDOPSIS THALIANA SEED IMBIBITION 2); hydrolase, hydrolyzing O-glycosyl compounds  similar to ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G55740.1); similar to DI"
MSGI1_81108	NODE_44291_length_160_cov_19.543751	22.2	17	0	0	0	0	5.5	5.1	not assigned.unknown	not assigned.unknown
MSGI1_93051	NODE_44293_length_142_cov_21.718309	20.1	7.6	3.8	9.4	0	0	2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_87434	NODE_44294_length_150_cov_6.080000	3.6	4.9	42.6	9	0	-2.2	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_100164	NODE_44299_length_133_cov_3.781955	0	0	13.5	7.8	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_47914	NODE_4431_length_255_cov_15.125490	6.3	9.2	33	11.6	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_22933	NODE_4431_length_457_cov_78.735229	130.6	84.5	46.8	108.7	0	1.2	1.5	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S17 (RPS17A)  Identical to 40S ribosomal protein S17-1 (RPS17A) [Arabidopsis Thaliana] (GB:P49205;GB:Q9SJD0); similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT5G04800.4); similar to 40S ribosomal protein S
MSGI1_46454	NODE_44313_length_262_cov_36.167938	42.7	27.7	92.1	47.2	0	0	-1.1	0	redox.thioredoxin	"ferredoxin thioredoxin reductase catalytic beta chain family protein  similar to Ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor (FTR-C) (GB:O49856); contains InterPro domain Ferredoxin thioredoxin reductase, beta chain; (InterPro"
MSGI1_75663	NODE_44319_length_170_cov_7.270588	0.2	0.5	6.1	17.4	0	0	0	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_52087	NODE_44339_length_237_cov_7.232068	7.8	2.5	36.4	0.5	0	-6.2	-2.2	0	signalling.receptor kinases.DUF 26	"protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23150.1); similar to CRK10 (CYSTEINE-RICH RLK10), kinase [Arabidopsis thaliana] (TAIR:AT4G23180.1); similar to CRK6 (CYSTEINE-RICH RLK 6), kinase [Ar"
MSGI1_76685	NODE_44341_length_168_cov_12.261905	24.6	12	2.5	11.6	0	0	3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_69198	NODE_4436_length_184_cov_8.179348	0	0	12.7	20.8	0	0	-4.7	-5.4	DNA.unspecified	"reverse transcriptase, putative / RNA-dependent DNA polymerase, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G34320.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1); contains InterPro domain Polynucleotidy"
MSGI1_112518	NODE_44393_length_109_cov_15.715596	19.6	13.3	2.6	4.1	0	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_48802	NODE_44395_length_251_cov_7.330678	5.7	12.1	77.3	5.3	0	-3.9	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_61226	NODE_44406_length_205_cov_28.497561	13	11.5	34.3	7	0	-2.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_117835	NODE_44407_length_64_cov_38.953125	20.4	1.1	3.9	0.8	-4.2	0	2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_86743	NODE_44412_length_151_cov_35.602650	33.9	153.8	1.8	0.5	2.2	0	4.2	8.3	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN3 (ASPARAGINE SYNTHETASE 3); asparagine synthase (glutamine-hydrolyzing) Encodes asparagine synthetase (ASN3). similar to ASN1 (DARK INDUCIBLE 6) [Arabidopsis thaliana] (TAIR:AT3G47340.1); similar to ASN2 (ASPARAGINE SYNTHETASE 2), asparagine synthase"
MSGI1_67533	NODE_44419_length_188_cov_22.595745	21.3	18	0	0.2	0	0	5.4	6.5	not assigned.unknown	not assigned.unknown
MSGI1_81675	NODE_44454_length_159_cov_16.037735	0.8	2.7	14.1	1.1	0	-3.7	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_117982	NODE_4447_length_63_cov_91.666664	1.7	0.5	21.2	2.8	0	-2.9	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_56097	NODE_44474_length_222_cov_16.963964	16.1	42.3	45.5	25.7	1.4	0	-1.5	0	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to IKU2 (HAIKU2), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G19700.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TA"
MSGI1_56097	NODE_44474_length_222_cov_16.963964	16.1	42.3	45.5	25.7	1.4	0	-1.5	0	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to IKU2 (HAIKU2), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G19700.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TA"
MSGI1_106565	NODE_44487_length_126_cov_5.341270	0	0.6	6.5	12.3	0	0	0	-4.4	C1-metabolism.S-(hydroxymethyl)glutathione dehydrogenase & S-(hydroxymethyl)glutathione synthase	"ADH2 (ALCOHOL DEHYDROGENASE 2); formaldehyde dehydrogenase (glutathione) Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glut"
MSGI1_106565	NODE_44487_length_126_cov_5.341270	0	0.6	6.5	12.3	0	0	0	-4.4	misc.alcohol dehydrogenases	"ADH2 (ALCOHOL DEHYDROGENASE 2); formaldehyde dehydrogenase (glutathione) Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glut"
MSGI1_73262	NODE_44495_length_175_cov_16.274286	42.2	13.5	41.2	17.5	-1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_112517	NODE_4450_length_109_cov_54.238533	22.3	50.2	8	9.8	1.2	0	0	2.4	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	ATMYC2 (JASMONATE INSENSITIVE 1); DNA binding / transcription factor Encodes a 68 kD MYC-related transcriptional activator with a typical DNA binding domain of a basic region helix-loop-helix leucine zipper motif. Its transcription is induced by dehydrat
MSGI1_112517	NODE_4450_length_109_cov_54.238533	22.3	50.2	8	9.8	1.2	0	0	2.4	protein.postranslational modification	ATMYC2 (JASMONATE INSENSITIVE 1); DNA binding / transcription factor Encodes a 68 kD MYC-related transcriptional activator with a typical DNA binding domain of a basic region helix-loop-helix leucine zipper motif. Its transcription is induced by dehydrat
MSGI1_101932	NODE_44513_length_131_cov_20.732824	16	17.6	0	0	0	0	5	5.1	not assigned.unknown	not assigned.unknown
MSGI1_120707	NODE_44520_length_61_cov_29.803278	19.6	21	0	0	0	0	5.3	5.4	not assigned.unknown	not assigned.unknown
MSGI1_31398	NODE_44522_length_356_cov_15.595506	20.8	1.7	7.1	4.2	-3.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_115750	NODE_44523_length_81_cov_42.493828	31.3	19.9	0.3	2.5	0	0	6.7	3	not assigned.unknown	not assigned.unknown
MSGI1_68749	NODE_44537_length_185_cov_10.108109	11.9	34.7	10.6	10	1.5	0	0	1.8	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_28931	NODE_44558_length_380_cov_10.663157	6.8	16.1	29	17.3	0	0	-2.1	0	stress.abiotic.unspecified	RD2 (RESPONSIVE TO DESSICATION 2) Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment. similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT
MSGI1_120703	NODE_44565_length_61_cov_18.672131	10.8	15.3	0	0	0	0	4.4	4.9	not assigned.unknown	not assigned.unknown
MSGI1_7631	NODE_44599_length_876_cov_16.694063	4.7	20.9	4.5	6	2.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_95364	NODE_44600_length_139_cov_26.705036	26	13.7	0	0	0	0	5.7	4.8	nucleotide metabolism.salvage.nucleoside kinases.adenosine kinase	ADK1 (ADENOSINE KINASE 1) Involved in the salvage synthesis of                      adenylates and methyl recycling Identical to Adenosine kinase 1 (EC 2.7.1.20) (AK 1) (Adenosine 5'- phosphotransferase 1) (ADK1) [Arabidopsis Thaliana] (GB:Q9SF85); simil
MSGI1_84152	NODE_4462_length_155_cov_48.303226	48.3	20.4	14	12.5	-1.2	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_62263	NODE_4463_length_202_cov_34.613861	120.8	61.9	25.5	36.2	0	0	2.2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L36a/L44 (RPL36aB)  Identical to 60S ribosomal protein L36a (RPL36AB) [Arabidopsis Thaliana] (GB:O23290;GB:Q7GD84); similar to 60S ribosomal protein L36a/L44 (RPL36aA) [Arabidopsis thaliana] (TAIR:AT3G23390.1); similar to 60S ribosom
MSGI1_117561	NODE_44640_length_66_cov_10.060606	4.3	6	16.9	1.6	0	-3.4	0	0	stress.biotic	glycosyl hydrolase family 81 protein  similar to glycosyl hydrolase family 81 protein [Arabidopsis thaliana] (TAIR:AT1G18310.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96863.1); similar to beta-glucan-binding protein 4 [Medicago truncatu
MSGI1_113301	NODE_44641_length_103_cov_39.592232	14.7	21.2	0.3	1.5	0	0	5.6	3.8	not assigned.unknown	not assigned.unknown
MSGI1_7577	NODE_44643_length_879_cov_9.068259	12.9	15.7	40.4	14.8	0	-1.4	-1.6	0	lipid metabolism.lipid degradation.lipases	lipase class 3 family protein  similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT5G18630.2); similar to Os05g0372400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055362.1); similar to triacylglycerol Lipase [Triticum aestivum]
MSGI1_105603	NODE_44644_length_127_cov_55.921261	37.9	33.4	100.5	56	0	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_114973	NODE_44650_length_88_cov_59.034092	45.1	20.2	7.9	7.1	0	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_27325	NODE_44674_length_398_cov_34.268845	22.2	26	6.5	7	0	0	0	1.9	"lipid metabolism.'exotics' (steroids, squalene etc).UDP-glucose:sterol glucosyltransferase"	"UDP-glucose:sterol glucosyltransferase (UGT80A2)  similar to UDP-glucose:sterol glucosyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G43620.3); similar to UDP-glucose:sterol 3-O-glucosyltransferase [Panax (GB:BAC22616.1); similar to Glycosyl tra"
MSGI1_65891	NODE_4469_length_192_cov_36.822918	4.8	43.9	3.1	27.9	3.2	3.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_90865	NODE_44693_length_145_cov_19.937931	31.4	15.2	1.9	3.9	0	0	4	0	not assigned.unknown	not assigned.unknown
MSGI1_73260	NODE_44695_length_175_cov_10.011429	10.5	24.3	0	0	0	0	0	5.6	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_90864	NODE_44696_length_145_cov_14.289655	14.2	10.4	0.7	0.2	0	0	4.3	5.7	cell. vesicle transport	clathrin adaptor complexes medium subunit-related  similar to delta-COP [Zea mays] (GB:AAF67098.1); similar to Os05g0310800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055159.1); similar to Os05g0311000 [Oryza sativa (japonica cultivar-group)] (GB
MSGI1_108536	NODE_44709_length_124_cov_8.766129	9.7	11.2	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_11330	NODE_4473_length_712_cov_18.459270	30.7	0.3	9.5	0.5	-6.7	0	1.7	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_11330	NODE_4473_length_712_cov_18.459270	30.7	0.3	9.5	0.5	-6.7	0	1.7	0	development.unspecified	nodulin MtN21 family protein  similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT4G08300.1); similar to Os10g0210500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064323.1); similar to unknown protein [Oryza sativa (japonica cult
MSGI1_59030	NODE_44749_length_212_cov_7.117925	1.1	3.8	22.8	7.2	0	0	-4.4	0	not assigned.unknown	not assigned.unknown
MSGI1_115185	NODE_44757_length_86_cov_41.674419	27.9	40.6	0.3	0	0	0	6.5	6.3	not assigned.unknown	not assigned.unknown
MSGI1_40838	NODE_44769_length_290_cov_11.551724	17.3	4.6	2.2	4.3	0	0	3	0	misc.UDP glucosyl and glucoronyl transferases	"UGT73B1 (UDP-glucosyl transferase 73B1); UDP-glycosyltransferase/ abscisic acid glucosyltransferase  similar to UGT73B2, UDP-glucosyltransferase/ UDP-glycosyltransferase/ flavonol 3-O-glucosyltransferase [Arabidopsis thaliana] (TAIR:AT4G34135.1); similar"
MSGI1_89460	NODE_44784_length_147_cov_4.367347	0	0	9.3	11.1	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_89459	NODE_44789_length_147_cov_5.585034	0.2	4.7	12.9	1.9	0	0	-6	0	not assigned.unknown	not assigned.unknown
MSGI1_60543	NODE_44810_length_207_cov_14.289855	7.5	14.2	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_50406	NODE_4482_length_244_cov_76.696724	36.8	42.4	93.5	75.4	0	0	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_59029	NODE_44833_length_212_cov_23.759434	14.3	6.9	1.8	1.3	0	0	3	0	cell wall	glycosyl hydrolase family 79 N-terminal domain-containing protein  Identical to Heparanase-like protein 1 precursor (EC 3.2.-.-) [Arabidopsis Thaliana] (GB:Q9FF10;GB:Q9SDA1); similar to glycosyl hydrolase family 79 N-terminal domain-containing protein [A
MSGI1_106563	NODE_44834_length_126_cov_7.039682	4.4	14.4	24.9	1.1	0	-4.5	-2.5	3.7	signalling.MAP kinases	"MAPKKK13 (Mitogen-activated protein kinase kinase kinase 13); kinase member of MEKK subfamily similar to MAPKKK14 (Mitogen-activated protein kinase kinase kinase 14), kinase [Arabidopsis thaliana] (TAIR:AT2G30040.1); similar to Protein kinase domain cont"
MSGI1_45785	NODE_44835_length_265_cov_9.773585	13.5	21.7	0.4	0.5	0	0	5.1	5.4	not assigned.unknown	not assigned.unknown
MSGI1_22177	NODE_44840_length_467_cov_8.565310	11.8	0.7	2.1	0.8	-4.1	0	0	0	misc.UDP glucosyl and glucoronyl transferases	"UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22360.1); similar to transcription factor/ transferase, transferring glycosyl groups [Arabidops"
MSGI1_52632	NODE_44841_length_235_cov_12.817021	32.4	6.7	47.3	11.2	-2.3	-2.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_108534	NODE_44847_length_124_cov_15.822580	123.2	36.9	68.2	60.9	-1.7	0	0	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_108534	NODE_44847_length_124_cov_15.822580	123.2	36.9	68.2	60.9	-1.7	0	0	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_39790	NODE_4485_length_296_cov_70.108109	11.2	16.1	77.9	19.9	0	-2	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_103750	NODE_44863_length_129_cov_15.759690	6.1	16.6	31.2	4.2	0	-2.9	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_57808	NODE_44875_length_216_cov_35.000000	16.2	11.8	31.7	7.1	0	-2.2	0	0	cell wall.degradation.pectate lyases and polygalacturonases	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT4G23500.1); similar to Glycoside hydrolas
MSGI1_97718	NODE_4488_length_136_cov_10.617647	1	1.3	19.5	10.7	0	0	-4.3	0	not assigned.unknown	not assigned.unknown
MSGI1_59605	NODE_44883_length_210_cov_29.157143	20.4	29.5	58.4	12.2	0	-2.3	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_96165	NODE_44888_length_138_cov_13.456522	11.6	11.2	0.5	2.8	0	0	4.5	0	misc.misc2	dienelactone hydrolase family protein  similar to dienelactone hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G35420.1); similar to Predicted hydrolase related to dienelactone hydrolase (ISS) [Ostreococcus tauri] (GB:CAL50216.1); similar to Os01
MSGI1_120685	NODE_44899_length_61_cov_26.950819	258.1	224	0.8	0	0	0	8.3	8.8	protein.aa activation.lysine-tRNA ligase	"lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative  Identical to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) [Arabidopsis Thaliana] (GB:Q9ZPI1); similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Ar"
MSGI1_93838	NODE_4490_length_141_cov_18.234043	7.5	18.6	3.8	1.5	0	0	0	3.6	not assigned.unknown	not assigned.unknown
MSGI1_40297	NODE_44903_length_293_cov_15.245734	20.1	1.9	6.9	3.8	-3.4	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_40297	NODE_44903_length_293_cov_15.245734	20.1	1.9	6.9	3.8	-3.4	0	0	0	cell wall	NIP1;2/NLM2 (NOD26-like intrinsic protein 1;2); water channel  Identical to Aquaporin NIP1.2 (NOD26-like intrinsic protein 1.2) (Nodulin-26-like major intrinsic protein 2) (AtNLM2) (Protein NLM2) (NodLikeMip2) (NIP1.2) [Arabidopsis Thaliana] (GB:Q8LFP7;G
MSGI1_40297	NODE_44903_length_293_cov_15.245734	20.1	1.9	6.9	3.8	-3.4	0	0	0	transport.Major Intrinsic Proteins.NIP	NIP1;2/NLM2 (NOD26-like intrinsic protein 1;2); water channel  Identical to Aquaporin NIP1.2 (NOD26-like intrinsic protein 1.2) (Nodulin-26-like major intrinsic protein 2) (AtNLM2) (Protein NLM2) (NodLikeMip2) (NIP1.2) [Arabidopsis Thaliana] (GB:Q8LFP7;G
MSGI1_88776	NODE_44919_length_148_cov_32.452702	33.7	6.1	33.5	1.7	-2.5	-4.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_25024	NODE_4493_length_427_cov_63.384075	19.2	27.1	63.4	26.5	0	-1.3	-1.7	0	cell.organisation	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5); actin binding Encodes actin depolymerizing factor 5 (ADF5). Identical to Actin-depolymerizing factor 5 (ADF-5) (AtADF5) (ADF5) [Arabidopsis Thaliana] (GB:Q9ZNT3;GB:Q9SLE7); similar to actin binding [Arabidopsis thali
MSGI1_24941	NODE_44956_length_428_cov_16.271029	11	16.9	0.1	0	0	0	6.8	5.1	not assigned.unknown	not assigned.unknown
MSGI1_120680	NODE_44963_length_61_cov_58.000000	72.5	46.9	53.1	125.6	0	1.2	0	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_43670	NODE_44974_length_275_cov_16.487272	5.2	7.7	22.8	10.7	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_116909	NODE_44997_length_71_cov_46.112675	42.8	50.9	1.8	7.2	0	0	4.6	2.8	not assigned.unknown	not assigned.unknown
MSGI1_117414	NODE_45000_length_67_cov_109.820892	25.3	58.5	0.4	0	1.2	0	6	6.9	not assigned.unknown	not assigned.unknown
MSGI1_120674	NODE_45006_length_61_cov_83.606560	20.3	25.9	0	0	0	0	5.3	5.7	redox.ascorbate and glutathione.ascorbate	"monodehydroascorbate reductase, putative  Identical to Probable monodehydroascorbate reductase, cytoplasmic isoform 4 (EC 1.6.5.4) (MDAR 4) [Arabidopsis Thaliana] (GB:Q93WJ8;GB:Q8LBB1;GB:Q9LZS5); similar to ATMDAR1 (MONODEHYDROASCORBATE REDUCTASE 1), mon"
MSGI1_120673	NODE_45014_length_61_cov_84.081970	12.3	18.3	0	0	0	0	4.6	5.2	not assigned.unknown	not assigned.unknown
MSGI1_101928	NODE_45019_length_131_cov_5.305344	3.1	5.5	21	2.3	0	-3.2	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_94586	NODE_45045_length_140_cov_11.864285	1.4	12.5	0.7	0.7	0	0	0	4.2	not assigned.unknown	not assigned.unknown
MSGI1_63357	NODE_45065_length_199_cov_43.638191	29.6	61.7	71.1	74.7	1.1	0	-1.3	0	fermentation.ADH	ADH1 (ALCOHOL DEHYDROGENASE 1); alcohol dehydrogenase Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treat
MSGI1_30523	NODE_45069_length_364_cov_6.686813	19.8	5.1	2.6	4	0	0	2.9	0	cell wall	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_30523	NODE_45069_length_364_cov_6.686813	19.8	5.1	2.6	4	0	0	2.9	0	stress.biotic	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_96921	NODE_45104_length_137_cov_15.781022	16.7	17.7	2.9	1.3	0	0	0	3.8	not assigned.unknown	not assigned.unknown
MSGI1_20673	NODE_45119_length_490_cov_14.473470	3.7	13.8	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_114972	NODE_45134_length_88_cov_77.375000	6	33.5	11.1	26.7	2.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_58718	NODE_45139_length_213_cov_10.366198	2.3	6.3	18.6	13.2	0	0	-3	0	misc.misc2	"epoxide hydrolase, putative  similar to epoxide hydrolase, putative [Arabidopsis thaliana] (TAIR:AT3G05600.1); similar to soluble epoxide hydrolase [Citrus jambhiri] (GB:BAD13534.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000"
MSGI1_109556	NODE_45140_length_123_cov_9.804878	14.3	8.6	12.4	0.8	0	-4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_55822	NODE_45144_length_223_cov_25.372198	27.5	2.7	14.2	2.8	-3.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_48153	NODE_45152_length_254_cov_12.094488	8.2	34.9	20	41.3	2.1	0	0	0	protein.degradation	"latex-abundant family protein (AMC3) / caspase family protein  similar to LOL3 (LSD ONE LIKE 3), caspase/ cysteine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT1G02170.1); similar to ICE-like protease p20 domain containing protein, expressed [Oryza"
MSGI1_49670	NODE_45162_length_247_cov_8.947369	10.6	9.1	46.6	14.9	0	-1.6	-2.1	0	amino acid metabolism.degradation.branched-chain group.leucine	MCCB (3-METHYLCROTONYL-COA CARBOXYLASE); biotin carboxylase MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not. Identical to Methylcrotonoyl-CoA carboxyla
MSGI1_37137	NODE_45173_length_312_cov_7.400641	6.6	6.6	56.6	12.7	0	-2.2	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_34217	NODE_45218_length_333_cov_28.615616	17.8	13.3	0	0	0	0	5.2	4.7	not assigned.unknown	not assigned.unknown
MSGI1_67106	NODE_45219_length_189_cov_2.867725	1.8	2.4	24.2	3	0	-3	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_65887	NODE_4522_length_192_cov_16.093750	5.6	6	41	2.6	0	-4	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_30629	NODE_45226_length_363_cov_10.019283	14.2	17	0.5	0.4	0	0	4.8	5.4	not assigned.unknown	not assigned.unknown
MSGI1_89456	NODE_4525_length_147_cov_101.918365	144.6	123.6	99.1	50.7	0	0	0	1.3	not assigned.unknown	not assigned.unknown
MSGI1_53414	NODE_4528_length_232_cov_47.275864	62.2	31.3	17.1	34.6	0	0	1.9	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S14 (RPS14A)  Identical to 40S ribosomal protein S14-2 (RPS14B) [Arabidopsis Thaliana] (GB:Q9CAX6); Identical to 40S ribosomal protein S14-1 (RPS14A) [Arabidopsis Thaliana] (GB:Q9SIH0); similar to 40S ribosomal protein S14 (RPS14B) [
MSGI1_61219	NODE_45285_length_205_cov_6.892683	7.5	10.9	38.5	7.5	0	-2.4	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_76151	NODE_45286_length_169_cov_6.934911	9.7	13.3	2.3	1.3	0	0	0	3.4	not assigned.unknown	not assigned.unknown
MSGI1_33170	NODE_45295_length_341_cov_13.451612	10.4	13.3	36	9.1	0	-2	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_78767	NODE_45296_length_164_cov_13.042683	14.9	19.6	7.6	3.6	0	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_33684	NODE_45303_length_337_cov_13.326409	20.7	10.5	2.8	7.7	0	0	2.9	0	cell wall.cell wall proteins.AGPs	FLA1 (FLA1) fasciclin-like arabinogalactan-protein 1 (Fla1) Identical to Fasciclin-like arabinogalactan protein 1 precursor (FLA1) [Arabidopsis Thaliana] (GB:Q9FM65;GB:Q8L8T1); similar to FLA2 (FLA2) [Arabidopsis thaliana] (TAIR:AT4G12730.1); similar to p
MSGI1_92310	NODE_45312_length_143_cov_20.734266	19.6	27.4	9.1	3	0	0	0	3.2	not assigned.unknown	not assigned.unknown
MSGI1_95358	NODE_45319_length_139_cov_48.661869	25.9	16.4	2.9	4.8	0	0	3.2	0	secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA reductase	HMG2 (3-hydroxy-3-methylglutaryl-CoA reductase 2) 3-hydroxy-3-methylglutaryl-CoA reductase Identical to 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 (EC 1.1.1.34) (HMG- CoA reductase 2) (HMGR2) (HMG2) [Arabidopsis Thaliana] (GB:P43256); similar to H
MSGI1_95358	NODE_45319_length_139_cov_48.661869	25.9	16.4	2.9	4.8	0	0	3.2	0	secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA reductase	HMG2 (3-hydroxy-3-methylglutaryl-CoA reductase 2) 3-hydroxy-3-methylglutaryl-CoA reductase Identical to 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 (EC 1.1.1.34) (HMG- CoA reductase 2) (HMGR2) (HMG2) [Arabidopsis Thaliana] (GB:P43256); similar to H
MSGI1_47031	NODE_45324_length_259_cov_9.969112	12.7	32.8	14.7	9.4	0	0	0	1.8	protein.degradation.ubiquitin.E3.RING	zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G14200.1); similar to Os03g0324900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049982.1); similar t
MSGI1_113039	NODE_45326_length_105_cov_44.447620	3	17.3	6.5	5.2	2.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_29896	NODE_4533_length_370_cov_18.894594	2.3	2.1	33.8	19.4	0	0	-3.9	-3.2	not assigned.unknown	not assigned.unknown
MSGI1_34387	NODE_45330_length_332_cov_9.183735	5.5	5.7	30.6	2.7	0	-3.5	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_70108	NODE_45336_length_182_cov_7.692307	9.1	12.6	2.2	1	0	0	0	3.7	not assigned.unknown	not assigned.unknown
MSGI1_115645	NODE_45346_length_82_cov_10.048780	2.4	13.8	4.4	1.4	0	0	0	3.3	not assigned.unknown	not assigned.unknown
MSGI1_112514	NODE_45351_length_109_cov_6.926606	3.6	8.3	6.3	29.6	0	2.2	0	-1.8	transport.amino acids	"amino acid permease, putative  Identical to Auxin transporter-like protein 1 (AUX1-like protein 1) (LAX1) [Arabidopsis Thaliana] (GB:Q9LFB2;GB:Q9SMW2); similar to amino acid permease, putative [Arabidopsis thaliana] (TAIR:AT2G21050.1); similar to AUX1 (A"
MSGI1_86057	NODE_45383_length_152_cov_36.013157	5.8	47.7	22.6	28.3	3	0	0	0	development.unspecified	TET6 (TETRASPANIN6) Member of TETRASPANIN family similar to TET9 (TETRASPANIN9) [Arabidopsis thaliana] (TAIR:AT4G30430.1); similar to putative senescence-associated protein [Oryza sativa (japonica cultivar-group)] (GB:AAS90676.1); contains InterPro domain
MSGI1_69195	NODE_45384_length_184_cov_18.836956	18.2	12.7	3.2	2.7	0	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_55821	NODE_45391_length_223_cov_9.901345	4.5	23.7	6.5	13.4	2.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_8258	NODE_454_length_844_cov_19.260664	2	3.4	35.7	8.6	0	-2.1	-4.2	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	extracellular ligand-gated ion channel  similar to extracellular ligand-gated ion channel [Arabidopsis thaliana] (TAIR:AT1G50630.1); similar to AT3g20300/MQC12_5 [Medicago truncatula] (GB:ABD32643.1); contains InterPro domain Neurotransmitter-gated ion-ch
MSGI1_46447	NODE_4540_length_262_cov_58.286259	4.1	1.3	74.7	0	0	-7.2	-4.2	0	stress.biotic	"protease inhibitor, putative  similar to serine protease inhibitor, potato inhibitor I-type family protein [Arabidopsis thaliana] (TAIR:AT2G38900.1); similar to type I proteinase inhibitor-like protein [Citrus x paradisi] (GB:AAN76363.1); contains InterP"
MSGI1_96162	NODE_45400_length_138_cov_16.007246	7.8	10	34.7	21.7	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_47686	NODE_45406_length_256_cov_12.007812	14.2	1.4	4	3.2	-3.3	0	0	0	signalling.receptor kinases.legume-lectin	"lectin protein kinase, putative  similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G53810.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98991.1); similar to lec"
MSGI1_40488	NODE_45409_length_292_cov_14.441781	19	18.4	1.8	1.4	0	0	3.4	3.7	fermentation.PDC	pyruvate decarboxylase family protein  similar to CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) [Arabidopsis thaliana] (TAIR:AT3G48560.1); similar to Os01g0505400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043144.1); similar to COG0028: Thiamine
MSGI1_102829	NODE_45415_length_130_cov_6.738461	1.4	7.8	81.6	2.6	0	-5	-5.9	0	protein.postranslational modification	"CIPK5 (CBL-INTERACTING PROTEIN KINASE 5); kinase Encodes CBL-interacting protein kinase 5 (CIPK5). similar to CIPK25 (CBL-INTERACTING PROTEIN KINASE 25), kinase [Arabidopsis thaliana] (TAIR:AT5G25110.1); similar to CBL-interacting protein kinase 6 [Popul"
MSGI1_34521	NODE_45416_length_331_cov_12.873112	2	19.6	7.2	8.3	3.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_46846	NODE_45426_length_260_cov_11.850000	11.1	20.3	3.6	19.9	0	2.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_72360	NODE_45433_length_177_cov_37.960453	26.9	15.7	4.9	12	0	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_52353	NODE_45436_length_236_cov_20.584745	24.4	1.1	2.3	0.2	-4.5	0	3.4	0	secondary metabolism.flavonoids.anthocyanins	transferase family protein  similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G01210.1); similar to AER [Nicotiana tabacum] (GB:AAM73656.1); contains InterPro domain Transferase; (InterPro:IPR003480)
MSGI1_111790	NODE_45467_length_115_cov_16.834784	15.2	11.9	0	0	0	0	4.9	4.6	transport.metabolite transporters at the mitochondrial membrane	mitochondrial substrate carrier family protein  similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G51050.1); similar to Os05g0585900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056459.1); similar to mitochond
MSGI1_63664	NODE_45477_length_198_cov_21.191919	23.7	31.4	6.7	5.8	0	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_65150	NODE_45501_length_194_cov_11.747422	13.2	0.9	1.1	1	-3.9	0	3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_117413	NODE_45530_length_67_cov_34.671642	9.4	20.4	0.4	0	0	0	0	5.4	not assigned.unknown	not assigned.unknown
MSGI1_111943	NODE_45535_length_114_cov_14.324561	12.9	27.9	0.8	0	0	0	4	5.8	not assigned.unknown	not assigned.unknown
MSGI1_98486	NODE_45541_length_135_cov_12.155556	5.1	4.1	23.8	16.4	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_108529	NODE_45543_length_124_cov_12.008064	10.7	17.5	43.6	20	0	0	-2	0	transport.ABC transporters and multidrug resistance systems	ATGCN1 (Arabidopsis thaliana general control non-repressible 1) member of GCN subfamily similar to ATGCN4 (Arabidopsis thaliana general control non-repressible 4) [Arabidopsis thaliana] (TAIR:AT3G54540.1); similar to ABC transporter homolog [Populus nigr
MSGI1_107519	NODE_45564_length_125_cov_8.432000	0.4	8.7	11.5	0.5	0	-4.5	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_33929	NODE_4557_length_335_cov_48.331345	11.2	25.8	0.4	0.5	0	0	4.8	5.7	not assigned.unknown	not assigned.unknown
MSGI1_98484	NODE_45601_length_135_cov_15.259259	17.7	6.7	1.7	0.3	0	0	3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_47257	NODE_45611_length_258_cov_8.779070	7	11.8	29.8	4.4	0	-2.8	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_117412	NODE_45616_length_67_cov_4.776119	2.3	6	32.3	22.4	0	0	-3.8	0	protein.degradation.ubiquitin	UBQ5 (UBIQUITIN 5); protein binding  Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical to 40S ribosomal protein S27a-3 (UBQ5) [Arabidopsis Thaliana] (GB:P59233;GB:P192
MSGI1_117412	NODE_45616_length_67_cov_4.776119	2.3	6	32.3	22.4	0	0	-3.8	0	protein.synthesis.misc ribososomal protein	UBQ5 (UBIQUITIN 5); protein binding  Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical to 40S ribosomal protein S27a-3 (UBQ5) [Arabidopsis Thaliana] (GB:P59233;GB:P192
MSGI1_24523	NODE_45617_length_433_cov_6.706697	14.3	1	17.7	0.6	-3.8	-4.9	0	0	cell wall	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_24523	NODE_45617_length_433_cov_6.706697	14.3	1	17.7	0.6	-3.8	-4.9	0	0	secondary metabolism.simple phenols	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_28131	NODE_45624_length_389_cov_11.953728	12	1.4	15	1.3	0	-3.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_9632	NODE_4563_length_777_cov_18.357786	9.4	11.2	28.6	6	0	-2.3	0	0	glycolysis.PEPCK	"PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE); kinase Encodes a phosphoenolpyruvate carboxylase kinase that is expressed at highest levels in leaves. Expression is induced by light. similar to PPCK2 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2), kinase [Ar"
MSGI1_9632	NODE_4563_length_777_cov_18.357786	9.4	11.2	28.6	6	0	-2.3	0	0	cell wall	"PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE); kinase Encodes a phosphoenolpyruvate carboxylase kinase that is expressed at highest levels in leaves. Expression is induced by light. similar to PPCK2 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2), kinase [Ar"
MSGI1_116908	NODE_45634_length_71_cov_11.183099	27.8	17.3	1.5	3.4	0	0	4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_65532	NODE_45636_length_193_cov_26.756477	15.6	10.6	0	0	0	0	5	0	not assigned.unknown	not assigned.unknown
MSGI1_87423	NODE_45654_length_150_cov_9.233334	5.8	18.4	0.5	1	0	0	0	4.2	not assigned.unknown	not assigned.unknown
MSGI1_86054	NODE_45665_length_152_cov_8.565789	9.2	17.3	0	0	0	0	0	5.1	protein.postranslational modification	"CIPK10 (CBL-INTERACTING PROTEIN KINASE 10); kinase Encodes a CBL-interacting protein kinase with similarity to SOS protein kinase. similar to CIPK2 (CBL-INTERACTING PROTEIN KINASE 2), kinase [Arabidopsis thaliana] (TAIR:AT5G07070.1); similar to CBL-inter"
MSGI1_77712	NODE_45672_length_166_cov_11.590362	6.7	3	24.2	50.9	0	1.1	0	-4.1	minor CHO metabolism.others	aldose 1-epimerase family protein  similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT3G47800.1); similar to Galactose mutarotase-like [Medicago truncatula] (GB:ABE90391.1); contains InterPro domain Galactose mutarotase-like; (Int
MSGI1_84796	NODE_45695_length_154_cov_14.441559	8	13.2	0	0	0	0	0	4.7	transport.unspecified anions	anion exchange family protein  Identical to Boron transporter-like protein 2 [Arabidopsis Thaliana] (GB:Q9XI23); similar to anion exchanger [Arabidopsis thaliana] (TAIR:AT4G32510.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:A
MSGI1_120630	NODE_4570_length_61_cov_20.836065	45.7	43.9	12.8	18.9	0	0	1.8	0	protein.synthesis.initiation	"eukaryotic translation initiation factor 4A, putative / eIF-4A, putative  Identical to Eukaryotic initiation factor 4A-3 (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A-3) (eIF-4A-3) (DEAD-box ATP-dependent RNA helicase 23) (TIF4A-3) [Arabidopsis Thaliana"
MSGI1_68744	NODE_45722_length_185_cov_8.594595	13.3	15.3	1.6	0.6	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_13373	NODE_45733_length_648_cov_9.663580	12	34.3	0.1	0	1.5	0	6.9	6.1	not assigned.unknown	not assigned.unknown
MSGI1_120629	NODE_45736_length_61_cov_33.377048	26.3	4.5	8.8	2.5	-2.5	0	0	0	cell wall.cell wall proteins.AGPs	"FLA2 (FLA2) AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds Identical to Fasciclin-like arabinogalactan protein 2 precursor (FLA2) [Arabidopsis Thaliana] (GB:Q9SU13;GB:Q8L9T2;GB:Q9C5Q6); similar to FLA1 (F"
MSGI1_42912	NODE_4574_length_279_cov_81.197136	14.4	51.7	21.5	23.4	1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_23613	NODE_4574_length_447_cov_16.447428	26.8	46.1	64	21.3	0	-1.6	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_90854	NODE_45760_length_145_cov_10.613793	12.4	5.5	18.9	23.6	0	0	0	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_116293	NODE_45767_length_76_cov_16.789474	12.3	10.3	0.7	0.4	0	0	4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_56095	NODE_45792_length_222_cov_14.045045	19.7	12.4	2.7	2.3	0	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_86734	NODE_45797_length_151_cov_10.953643	10.2	2.3	12.2	19.4	0	0	0	-3.1	"misc.beta 1,3 glucan hydrolases"	"BGL2 (PATHOGENESIS-RELATED PROTEIN 2); glucan 1,3-beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds beta 1,3-glucanase Identical to Glucan endo-1,3-beta-glucosidase, acidic isoform precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) (("
MSGI1_113298	NODE_45799_length_103_cov_26.398058	12.7	17.4	1.8	1.8	0	0	0	3.3	RNA.processing.splicing	"SUS2 (ABNORMAL SUSPENSOR 2) a genetic locus involved in embryogenesis. Mutations in this locus result in an abnormal suspensor and embryo lethality. similar to splicing factor, putative [Arabidopsis thaliana] (TAIR:AT4G38780.1); similar to PREDICTED: sim"
MSGI1_20108	NODE_45806_length_502_cov_16.021912	8.5	14.8	0	0	0	0	0	4.9	not assigned.unknown	not assigned.unknown
MSGI1_54179	NODE_45818_length_229_cov_7.375546	8.7	12.2	0	0.5	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_64056	NODE_45822_length_197_cov_39.355331	21.5	28.1	34.8	9.3	0	-1.9	0	0	N-metabolism.nitrate metabolism.nitrite reductase	"NIR1 (NITRITE REDUCTASE); ferredoxin-nitrate reductase involved in the second step of nitrate assimilation Identical to Ferredoxin--nitrite reductase, chloroplast precursor (EC 1.7.7.1) (NiR) (NIR1) [Arabidopsis Thaliana] (GB:Q39161;GB:Q8H163;GB:Q8H164);"
MSGI1_31268	NODE_4583_length_357_cov_36.882355	3.3	0.5	74.6	2.8	0	-4.7	-4.5	0	stress.abiotic.drought/salt	RCI2B (RARE-COLD-INDUCIBLE 2B)  Identical to Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B) (RCI2B) [Arabidopsis Thaliana] (GB:Q9ZNS6;GB:Q9M9K9); similar to RCI2A (RARE-COLD-INDUCIBLE 2A) [Arabidopsis thaliana] (TAIR:AT3G05
MSGI1_31268	NODE_4583_length_357_cov_36.882355	3.3	0.5	74.6	2.8	0	-4.7	-4.5	0	stress.abiotic.cold	RCI2B (RARE-COLD-INDUCIBLE 2B)  Identical to Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B) (RCI2B) [Arabidopsis Thaliana] (GB:Q9ZNS6;GB:Q9M9K9); similar to RCI2A (RARE-COLD-INDUCIBLE 2A) [Arabidopsis thaliana] (TAIR:AT3G05
MSGI1_81668	NODE_45862_length_159_cov_21.308176	17.8	47.3	123.3	24.9	1.4	-2.3	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_104649	NODE_45864_length_128_cov_8.335938	4.3	2	8.7	15.6	0	0	0	-3	not assigned.unknown	not assigned.unknown
MSGI1_33815	NODE_45865_length_336_cov_6.238095	10.4	16	3.1	1.8	0	0	0	3.2	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	protein kinase family protein  Identical to Probable serine/threonine-protein kinase RLCKVII (EC 2.7.11.1) [Arabidopsis Thaliana] (GB:Q9LQQ8); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G28590.1); similar to protein kinase 1
MSGI1_101919	NODE_45875_length_131_cov_26.885496	4.6	26.6	9.1	4.7	2.5	0	0	2.5	not assigned.unknown	not assigned.unknown
MSGI1_61936	NODE_45880_length_203_cov_6.689655	5.5	19	24.4	11	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_85426	NODE_45910_length_153_cov_17.843138	9.7	47.2	13.6	9.4	2.3	0	0	2.3	not assigned.unknown	not assigned.unknown
MSGI1_52351	NODE_45911_length_236_cov_23.838984	16.8	9.6	2.9	6.4	0	0	2.5	0	amino acid metabolism.synthesis.aspartate family.lysine.LL-diaminopimelic acid aminotransferase	"AGD2 (ABERRANT GROWTH AND DEATH 2); transaminase Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on ch"
MSGI1_120618	NODE_45919_length_61_cov_34.934425	20.7	56.3	0.4	0	1.4	0	5.7	6.8	hormone metabolism.auxin.signal transduction	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_120618	NODE_45919_length_61_cov_34.934425	20.7	56.3	0.4	0	1.4	0	5.7	6.8	transport.misc	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_120618	NODE_45919_length_61_cov_34.934425	20.7	56.3	0.4	0	1.4	0	5.7	6.8	transport.amino acids	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_92307	NODE_45920_length_143_cov_9.902098	9.6	18.9	0	0	0	0	0	5.2	not assigned.unknown	not assigned.unknown
MSGI1_61934	NODE_45929_length_203_cov_21.399015	21.6	54.9	16.7	20.1	1.3	0	0	1.4	not assigned.unknown	not assigned.unknown
MSGI1_120616	NODE_45932_length_61_cov_10.819673	14	8.1	0.8	2.1	0	0	4.1	0	lipid metabolism.FA synthesis and FA elongation.acyl-CoA binding protein	"ACBP4 (ACYL-COA BINDING PROTEIN 4, ACYL-COA-BINDING DOMAIN 4); acyl-CoA binding Acyl-CoA binding protein with high affinity for   oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport. similar to ACBP5 (ACYL-COA BINDING PROTEIN 5, A"
MSGI1_111639	NODE_45942_length_116_cov_45.189655	28	19.1	0	0	0	0	5.8	5.3	protein.degradation.serine protease	"SCPL49 (serine carboxypeptidase-like 49); serine carboxypeptidase  Identical to Serine carboxypeptidase precursor (EC 3.4.16.-) [Arabidopsis Thaliana] (GB:P32826;GB:Q42107;GB:Q9CAE5); similar to SCPL48 (serine carboxypeptidase-like 48), serine carboxypep"
MSGI1_91582	NODE_45959_length_144_cov_2.770833	14.2	1.8	0.5	0	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_115950	NODE_4596_length_79_cov_20.341772	0	22.1	4.5	68.6	5.5	3.9	0	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_114144	NODE_45966_length_96_cov_16.302084	12.2	9.5	17.1	34.9	0	0	0	-1.9	RNA.regulation of transcription	BolA-like family protein  similar to BolA-like family protein [Arabidopsis thaliana] (TAIR:AT1G55805.1); similar to BolA-like [Oryza sativa (japonica cultivar-group)] (GB:BAD37765.1); contains InterPro domain BolA-like protein; (InterPro:IPR002634)
MSGI1_51618	NODE_45972_length_239_cov_26.535564	32	1.4	8.9	0.3	-4.5	0	1.8	0	secondary metabolism.phenylpropanoids	transferase family protein  similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G07850.1); similar to N-hydroxycinnamoyl/benzoyltransferase 6 [Glycine max] (GB:ABC47848.1); contains InterPro domain Transferase; (InterPro:IPR003480)
MSGI1_28394	NODE_4601_length_386_cov_23.471502	3.3	3.6	60.5	3.6	0	-4.1	-4.2	0	fermentation.aldehyde dehydrogenase	ALDH3H1 (ALDEHYDE DEHYDROGENASE 4); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) Encodes a protein similar to the aldehyde dehydrogenase cp-ADH from C.plantagineum. Constitutively expressed at low levels. Identical to Aldehyde dehyd
MSGI1_15316	NODE_46022_length_595_cov_9.290756	7.9	0.6	8	12.3	0	0	0	-4.4	misc.cytochrome P450	"CYP72A13 (cytochrome P450, family 72, subfamily A, polypeptide 13); oxygen binding putative cytochrome P450 similar to CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14690.1); similar t"
MSGI1_111638	NODE_4603_length_116_cov_212.543106	22	26.2	124.9	29	0	-2.1	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_26002	NODE_46039_length_414_cov_11.248793	9.6	11.5	0.2	0.1	0	0	0	6.8	not assigned.unknown	not assigned.unknown
MSGI1_11831	NODE_46045_length_695_cov_12.155396	9.5	6.2	28.3	3.6	0	-3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_47685	NODE_46078_length_256_cov_21.636719	14.7	25	36.5	9.2	0	-2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_77710	NODE_46140_length_166_cov_26.632530	8.8	15.9	0	0	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_53701	NODE_4624_length_231_cov_13.160173	14.6	19.3	14.1	36.4	0	1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_69189	NODE_46320_length_184_cov_14.342391	1	15.5	0.2	0	4	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_102827	NODE_46330_length_130_cov_12.546154	15.3	12.6	37.1	8.1	0	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_88069	NODE_4637_length_149_cov_56.906040	30.5	55.2	211.1	104.9	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_120604	NODE_4637_length_61_cov_16.459017	11	8.5	0	0.4	0	0	4.5	0	"lipid metabolism.'exotics' (steroids, squalene etc).squalene synthase"	"SQS2 (SQUALENE SYNTHASE 2); farnesyl-diphosphate farnesyltransferase squalene synthase, catalyzes the first committed step in sterol biosynthesis similar to SQS1 (SQUALENE SYNTHASE 1), farnesyl-diphosphate farnesyltransferase [Arabidopsis thaliana] (TAIR"
MSGI1_101070	NODE_46452_length_132_cov_8.242424	17.3	1.6	6.5	1.3	-3.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_25121	NODE_4646_length_426_cov_149.612671	42.5	91.6	0.6	0.2	1.1	0	6.1	8.8	not assigned.unknown	not assigned.unknown
MSGI1_23562	NODE_46565_length_448_cov_11.787947	27.1	8.3	2.4	1.6	0	0	3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_112402	NODE_466_length_110_cov_292.854553	157.1	62.7	54.5	38.9	-1.3	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_62606	NODE_4674_length_201_cov_11.616916	14.3	0	2.6	1.3	-4.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_79346	NODE_46747_length_163_cov_29.104294	1.2	25.7	0.7	22.2	4.4	5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_38397	NODE_4677_length_304_cov_182.253296	46.1	111	58.1	133.3	1.3	1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_105583	NODE_46783_length_127_cov_17.456694	13	18	2.1	2.1	0	0	0	3.1	not assigned.unknown	not assigned.unknown
MSGI1_116694	NODE_46890_length_73_cov_28.095890	5.6	17.7	0	0	0	0	0	5.1	not assigned.unknown	not assigned.unknown
MSGI1_19162	NODE_46922_length_520_cov_37.115383	43.5	28.3	18.3	23.6	0	0	1.2	0	protein.postranslational modification	ATPK3 (Arabidopsis thaliana serine/threonine protein kinase 3); kinase Encodes a serine/threonine protein kinase. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G32850.2); similar to putative serine-threonine protein kinase [Cucu
MSGI1_49246	NODE_4697_length_249_cov_128.843369	138.4	73.1	267.2	107.6	0	-1.3	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CCR1	cinnamoyl-CoA reductase family  similar to cinnamoyl-CoA reductase family [Arabidopsis thaliana] (TAIR:AT2G02400.1); similar to NmrA-like family protein [Solanum demissum] (GB:AAT39306.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (Int
MSGI1_35158	NODE_46994_length_326_cov_20.358896	2.4	21.2	3.6	9.4	3.1	0	0	0	protein.degradation.ubiquitin.E3.RING	U-box domain-containing protein  similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT1G67530.1); similar to bg55 [Bruguiera gymnorrhiza] (GB:BAB55653.1); contains InterPro domain
MSGI1_77706	NODE_47058_length_166_cov_22.036144	11.4	14.2	29.8	7.7	0	-2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_116693	NODE_47090_length_73_cov_34.561646	28	25.1	8	25.1	0	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_115288	NODE_47141_length_85_cov_20.835295	15.9	19.1	11.3	3.4	0	0	0	2.5	not assigned.unknown	not assigned.unknown
MSGI1_98478	NODE_47148_length_135_cov_18.466667	10	7.4	13.1	1	0	-3.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_95352	NODE_47165_length_139_cov_12.093525	3.6	6	128.5	9	0	-3.8	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_44656	NODE_47171_length_270_cov_15.692593	15.8	1.4	8.6	1.7	-3.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_98477	NODE_4719_length_135_cov_11.585185	7.1	11.3	0.2	0.5	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_75652	NODE_47193_length_170_cov_10.947059	12.6	0.4	5.9	0.2	-5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_110552	NODE_47201_length_122_cov_4.631147	5.2	3.2	51.5	1.1	0	-5.5	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_64051	NODE_4725_length_197_cov_12.487309	4.3	8.8	29.1	11.5	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_63662	NODE_47264_length_198_cov_12.404040	6.1	16.4	50.6	16	0	-1.7	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_113038	NODE_47267_length_105_cov_28.838095	20.7	12.8	2.9	0.6	0	0	2.8	4.4	not assigned.unknown	not assigned.unknown
MSGI1_85423	NODE_47269_length_153_cov_12.339869	12.2	9.1	45	8.4	0	-2.4	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_67949	NODE_47294_length_187_cov_30.315508	25.3	35.8	12.9	36.3	0	1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_43669	NODE_47299_length_275_cov_27.487272	11.5	13.5	47.6	13.3	0	-1.8	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_104645	NODE_47311_length_128_cov_3.898438	2	5.3	68.6	1.1	0	-6	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_68348	NODE_47315_length_186_cov_45.064518	31.9	37.6	15.9	58.4	0	1.9	0	0	cell wall	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to SLP2 (subtilisin-like serine protease 2), subtilase [Arabidopsis th"
MSGI1_68348	NODE_47315_length_186_cov_45.064518	31.9	37.6	15.9	58.4	0	1.9	0	0	protein.degradation.subtilases	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to SLP2 (subtilisin-like serine protease 2), subtilase [Arabidopsis th"
MSGI1_48358	NODE_47321_length_253_cov_21.770750	35.2	12	79.8	8.8	-1.6	-3.2	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_56628	NODE_47325_length_220_cov_7.745454	9	56	21.4	2.3	2.6	-3.2	0	4.6	RNA.regulation of transcription.PHOR1	U-box domain-containing protein  similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G66160.1); similar to syringolide-induced protein 13-1-1 [Glycine max] (GB:BAB86896.1); contains InterPro domain Armadillo-like helical; (InterPro:
MSGI1_61586	NODE_47347_length_204_cov_19.323530	10.3	9.7	50.9	7.9	0	-2.7	-2.3	0	cell wall	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_61586	NODE_47347_length_204_cov_19.323530	10.3	9.7	50.9	7.9	0	-2.7	-2.3	0	stress.biotic	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_89448	NODE_4735_length_147_cov_72.088432	116.1	57.4	14.7	43.2	-1	1.6	3	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L15 (RPL15B)  Identical to 60S ribosomal protein L15-2 (RPL15B) [Arabidopsis Thaliana] (GB:Q8VYF1;GB:O23582); Identical to 60S ribosomal protein L15-1 (RPL15A) [Arabidopsis Thaliana] (GB:O23515); similar to 60S ribosomal protein L15
MSGI1_37294	NODE_47352_length_311_cov_8.305467	7.1	4.8	34.8	0.9	0	-5.3	-2.3	0	misc.cytochrome P450	"cytochrome P450, putative  similar to CYP81D2 (cytochrome P450, family 81, subfamily D, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37360.1); similar to CYP81D3 (cytochrome P450, family 81, subfamily D, polypeptide 3), oxygen binding"
MSGI1_93033	NODE_47365_length_142_cov_14.774648	20.3	13.2	0	0	0	0	5.3	4.7	not assigned.unknown	not assigned.unknown
MSGI1_105579	NODE_47374_length_127_cov_13.889764	22.8	0.2	2.8	5.1	-6.8	0	3	0	not assigned.unknown	not assigned.unknown
MSGI1_65146	NODE_47392_length_194_cov_6.943299	4.4	20.7	20.3	7.9	2.2	0	0	0	stress.abiotic.heat	"DNAJ heat shock protein, putative  similar to DNAJ heat shock N-terminal domain-containing protein (J11) [Arabidopsis thaliana] (TAIR:AT4G36040.1); similar to DnaJ-like protein [Phaseolus vulgaris] (GB:AAB36543.1); contains InterPro domain Heat shock pro"
MSGI1_73250	NODE_47401_length_175_cov_29.377142	31.9	0.7	0.4	0.2	-5.5	0	6.3	0	stress.biotic	disease resistance-responsive family protein  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22900.1); similar to dirigent-like protein pDIR9 [Picea engelmannii x Picea glauca] (GB:ABD52120.1); contains InterPro domain Plant disease resistanc
MSGI1_110551	NODE_47403_length_122_cov_10.221312	5.8	10	44	7.1	0	-2.6	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_46653	NODE_47409_length_261_cov_50.693485	27.9	15.2	46.2	44.7	0	0	0	-1.6	gluconeogenesis.Malate DH	"PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2); malate dehydrogenase encodes a microbody NAD-dependent malate dehydrogenase Identical to Malate dehydrogenase, glyoxysomal precursor (EC 1.1.1.37) (mbNAD-MDH) [Arabidopsis Thaliana] (GB:Q9ZP05); similar to"
MSGI1_120584	NODE_47422_length_61_cov_77.901642	48.5	30.2	45.9	74.5	0	0	0	-1.3	signalling.calcium	"calnexin 1 (CNX1)  Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like l"
MSGI1_58060	NODE_47441_length_215_cov_7.981395	5.7	15.3	48.9	13.6	0	-1.8	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_44863	NODE_47450_length_269_cov_10.338290	8.2	12.8	0.3	0.2	0	0	0	6	not assigned.unknown	not assigned.unknown
MSGI1_34214	NODE_47458_length_333_cov_8.768768	4	5.2	14.8	27.4	0	0	0	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_117303	NODE_47458_length_68_cov_62.882355	42	137.6	58.1	152.7	1.7	1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_64444	NODE_47465_length_196_cov_13.265306	8.1	14.2	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_12579	NODE_47491_length_671_cov_67.391953	27.3	1.3	16	1.4	-4.4	-3.5	0	0	DNA.repair	methyladenine glycosylase family protein  similar to methyladenine glycosylase family protein [Arabidopsis thaliana] (TAIR:AT5G44680.1); similar to Methyladenine glycosylase [Medicago truncatula] (GB:ABE81339.1); contains InterPro domain Methyladenine gly
MSGI1_120578	NODE_47492_length_61_cov_58.426231	41.2	51.4	18	18.1	0	0	0	1.5	not assigned.unknown	not assigned.unknown
MSGI1_80538	NODE_47501_length_161_cov_18.118011	18.1	6.9	0	0	0	0	5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_54177	NODE_47512_length_229_cov_8.013101	4.8	13.8	0	0	0	0	0	4.8	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G17680.1); similar to TIR-NBS type disease resistance protein [Populus trichocarpa] (GB:ABF81459"
MSGI1_70987	NODE_4753_length_180_cov_8.294444	0	0	19.6	7.5	0	0	-5.3	0	not assigned.unknown	not assigned.unknown
MSGI1_106547	NODE_47570_length_126_cov_24.587301	25.1	28.8	4.4	3.5	0	0	2.5	3	not assigned.unknown	not assigned.unknown
MSGI1_37940	NODE_47582_length_307_cov_16.671009	13.8	14	29.3	37.2	0	0	0	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_48988	NODE_47599_length_250_cov_11.028000	15.7	1.3	6.2	3.5	-3.6	0	0	0	cell wall	leucine-rich repeat family protein / protein kinase family protein  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G53430.1); similar to leucine-rich repeat family protein / protein kinase fa
MSGI1_48988	NODE_47599_length_250_cov_11.028000	15.7	1.3	6.2	3.5	-3.6	0	0	0	signalling.receptor kinases.leucine rich repeat VIII-2	leucine-rich repeat family protein / protein kinase family protein  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G53430.1); similar to leucine-rich repeat family protein / protein kinase fa
MSGI1_44862	NODE_47627_length_269_cov_18.799257	16.9	11.6	1.8	3	0	0	3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_117833	NODE_47628_length_64_cov_23.078125	15.1	10.5	0	0	0	0	4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_14378	NODE_47634_length_619_cov_34.507271	26.6	7.2	2.6	2.2	-1.9	0	3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_65523	NODE_47653_length_193_cov_8.347150	3.2	19	2.7	5.3	2.6	0	0	0	misc.cytochrome P450	"CYP76C7 (cytochrome P450, family 76, subfamily C, polypeptide 7); oxygen binding encodes a protein with cytochrome P450 domain similar to CYP76C3 (cytochrome P450, family 76, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G45"
MSGI1_48563	NODE_4766_length_252_cov_169.587296	22.7	22.8	24.8	6.1	0	-2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_79931	NODE_47665_length_162_cov_7.197531	1.6	3.2	1.1	16.7	0	3.9	0	0	major CHO metabolism.synthesis.starch.transporter	"GPT2 (glucose-6-phosphate/phosphate translocator 2); antiporter/ glucose-6-phosphate transporter glucose6-Phosphate/phosphate transporter 2 Identical to Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor (GPT2) [Arabidopsis Thaliana] (GB"
MSGI1_79931	NODE_47665_length_162_cov_7.197531	1.6	3.2	1.1	16.7	0	3.9	0	0	transport.metabolite transporters at the envelope membrane	"GPT2 (glucose-6-phosphate/phosphate translocator 2); antiporter/ glucose-6-phosphate transporter glucose6-Phosphate/phosphate transporter 2 Identical to Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor (GPT2) [Arabidopsis Thaliana] (GB"
MSGI1_98472	NODE_47668_length_135_cov_28.392593	14.6	5.2	21.3	24.8	0	0	0	-2.3	not assigned.unknown	not assigned.unknown
MSGI1_86043	NODE_47688_length_152_cov_41.723682	35.7	17.8	13.2	18.8	0	0	1.4	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_44067	NODE_47690_length_273_cov_29.260073	43.2	6.3	11.3	8.4	-2.8	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_82898	NODE_47715_length_157_cov_8.414013	10.8	8.2	0.4	0	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_34518	NODE_47725_length_331_cov_11.302114	6.9	12	0.2	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_72800	NODE_47733_length_176_cov_33.187500	35.7	27.4	0	0.2	0	0	6.2	7.1	signalling.G-proteins	ATRAB7/ATRABG3E/AtRABG3e; GTP binding encodes a small GTPase involved in membrane trafficking. Gene expression is induced by hydrogen peroxide and lines. Lines overexpressing the gene are more tolerant to high salt and hyperosmotic conditions. similar to
MSGI1_36807	NODE_47742_length_314_cov_8.573249	2.2	12.5	0.8	0.9	0	0	0	3.8	not assigned.unknown	not assigned.unknown
MSGI1_84139	NODE_4776_length_155_cov_92.270966	146	53.6	19.8	38.1	-1.4	0	2.9	0	cell.organisation	"ACT11 (ACTIN-11); structural constituent of cytoskeleton Encodes an actin that is expressed predominantly during reproductive development. Identical to Actin-11 (ACT11) [Arabidopsis Thaliana] (GB:P53496); similar to ACT3 (ACTIN 3), structural constituent"
MSGI1_19368	NODE_4776_length_517_cov_23.489361	29.3	22.6	12.3	34.1	0	1.5	0	0	protein.folding	"chaperonin, putative  similar to ATTCP-1 (Arabidopsis thaliana T-complex protein 1 alpha subunit), ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT3G20050.1); similar to Chaperonin complex component, TCP-1 zeta sub"
MSGI1_20939	NODE_47787_length_485_cov_8.682474	13	0.4	7.6	0.6	-5	0	0	0	secondary metabolism.wax	"CER1 (ECERIFERUM 1) Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also l"
MSGI1_80534	NODE_47798_length_161_cov_15.322982	12.1	5.7	41.6	5.2	0	-3	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_71376	NODE_47800_length_179_cov_6.424581	6.6	3.3	28.2	3.6	0	-3	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_120561	NODE_4782_length_61_cov_14.032787	0	0	11.6	19.8	0	0	-4.5	-5.3	cell.organisation	ankyrin repeat family protein  similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT5G07270.1); similar to ring zinc finger protein [Artemisia desertorum] (GB:AAY17949.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contain
MSGI1_53697	NODE_47845_length_231_cov_13.636364	10	27.1	8	3.4	0	0	0	3	not assigned.unknown	not assigned.unknown
MSGI1_62254	NODE_47850_length_202_cov_12.267326	5.8	13.7	0	0.2	0	0	0	6.1	not assigned.unknown	not assigned.unknown
MSGI1_67100	NODE_47870_length_189_cov_13.338624	11	3.1	0.4	0.4	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_53410	NODE_47877_length_232_cov_26.551723	7.8	16.7	1.8	0.2	0	0	0	6.4	not assigned.unknown	not assigned.unknown
MSGI1_117557	NODE_47878_length_66_cov_31.166666	20.1	18.8	1.2	0.4	0	0	4.1	5.6	not assigned.unknown	not assigned.unknown
MSGI1_64441	NODE_47885_length_196_cov_9.326530	2.6	13.1	23.8	5.5	0	-2.1	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_120558	NODE_47893_length_61_cov_13.885246	8.4	12	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_120557	NODE_47895_length_61_cov_37.196720	9.7	36.9	21.5	8.6	1.9	0	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_18377	NODE_479_length_532_cov_16.706766	21.6	32.3	3.5	16.4	0	0	2.6	0	cell wall.degradation.pectate lyases and polygalacturonases	pectate lyase family protein  Identical to Probable pectate lyase 12 precursor (EC 4.2.2.2) [Arabidopsis Thaliana] (GB:Q9SCP2;GB:Q8LFH8); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G04310.1); similar to pectate lyase 12 precu
MSGI1_79341	NODE_47932_length_163_cov_8.852760	8.8	16.1	1.3	0.2	0	0	0	6.3	not assigned.unknown	not assigned.unknown
MSGI1_38842	NODE_4794_length_301_cov_13.774086	2.8	2.7	27.9	2.5	0	-3.5	-3.3	0	transport.nitrate	"ATNRT1:2 (NITRATE TRANSPORTER 1:2); calcium ion binding / transporter Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots. similar to nitrate transporter, putative [Arabidopsis thal"
MSGI1_45582	NODE_47942_length_266_cov_33.484962	33.1	58.8	7.4	9.9	0	0	2.2	2.6	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	ATMYC2 (JASMONATE INSENSITIVE 1); DNA binding / transcription factor Encodes a 68 kD MYC-related transcriptional activator with a typical DNA binding domain of a basic region helix-loop-helix leucine zipper motif. Its transcription is induced by dehydrat
MSGI1_45582	NODE_47942_length_266_cov_33.484962	33.1	58.8	7.4	9.9	0	0	2.2	2.6	protein.postranslational modification	ATMYC2 (JASMONATE INSENSITIVE 1); DNA binding / transcription factor Encodes a 68 kD MYC-related transcriptional activator with a typical DNA binding domain of a basic region helix-loop-helix leucine zipper motif. Its transcription is induced by dehydrat
MSGI1_82275	NODE_47973_length_158_cov_16.778481	28.1	8.9	8.2	11.7	0	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_51050	NODE_47973_length_241_cov_7.564315	4.5	17.1	1.3	0.7	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_116907	NODE_47977_length_71_cov_35.732395	8.6	11.1	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_18827	NODE_47981_length_525_cov_91.525711	115.3	45.5	88.7	57.5	-1.3	0	0	0	stress.abiotic.drought/salt	"hydrophobic protein, putative / low temperature and salt responsive protein, putative  similar to hydrophobic protein, putative / low temperature and salt responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G24040.1); similar to Protein of unkno"
MSGI1_18827	NODE_47981_length_525_cov_91.525711	115.3	45.5	88.7	57.5	-1.3	0	0	0	stress.abiotic.cold	"hydrophobic protein, putative / low temperature and salt responsive protein, putative  similar to hydrophobic protein, putative / low temperature and salt responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G24040.1); similar to Protein of unkno"
MSGI1_120550	NODE_47987_length_61_cov_39.377048	0	24.5	0.4	0	5.6	0	0	5.6	not assigned.unknown	not assigned.unknown
MSGI1_57167	NODE_47992_length_218_cov_11.931192	8.7	16.9	32.7	7.9	0	-2	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_70101	NODE_48007_length_182_cov_16.351648	17.5	27.5	8	6.8	0	0	0	2	not assigned.unknown	not assigned.unknown
MSGI1_44259	NODE_48027_length_272_cov_9.290442	12	5.6	19.5	1.8	0	-3.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_73247	NODE_48030_length_175_cov_13.342857	18.7	31.2	14.8	10.2	0	0	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_43668	NODE_4805_length_275_cov_44.036366	32	20.7	1.2	1.5	0	0	4.7	3.8	not assigned.unknown	not assigned.unknown
MSGI1_38053	NODE_48082_length_306_cov_9.901960	15.8	0.2	5.4	0	-6.3	0	0	0	cell wall.pectin*esterases.misc	pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT5G51490.1); similar to pectinesterase (EC 3.1.1.11) PECS-c2 - sweet orange (GB:T10494); similar to Pectinesterase-2 precursor (Pectin methylesterase) (
MSGI1_103733	NODE_48102_length_129_cov_12.085271	4.3	12.8	14.8	1.1	0	-3.8	0	3.5	cell wall	"protein kinase family protein  similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G47850.1); similar to cytokinin-regulated kinase 1 [Nicotiana tabacum] (GB:AAG25966.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009);"
MSGI1_103733	NODE_48102_length_129_cov_12.085271	4.3	12.8	14.8	1.1	0	-3.8	0	3.5	signalling.receptor kinases.crinkly like	"protein kinase family protein  similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G47850.1); similar to cytokinin-regulated kinase 1 [Nicotiana tabacum] (GB:AAG25966.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009);"
MSGI1_113680	NODE_48139_length_100_cov_8.180000	8.4	11.5	0.3	0	0	0	0	4.5	protein.targeting.peroxisomes	PEX5 (PEROXIN 5); peroxisome targeting signal-1 binding Encodes the peroxisomal targeting signal type 1 receptor that facilitates peroxisomal protein translocation. It recognizes proteins with the PTS1 consensus sequence (tripeptide SKL or a conserved va
MSGI1_30923	NODE_48193_length_360_cov_15.086111	20	26.4	23.2	7.5	0	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_94572	NODE_48197_length_140_cov_28.678572	15.7	36.9	66	32.9	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_120532	NODE_48206_length_61_cov_25.278688	7.1	2.2	26.7	9.9	0	0	-1.9	0	transport.peptides and oligopeptides	"proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G16180.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32296.1); sim"
MSGI1_56625	NODE_48234_length_220_cov_9.436363	7.9	14.9	31.8	15	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_107510	NODE_48261_length_125_cov_3.472000	5.1	5.3	25.8	7.8	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_101057	NODE_48302_length_132_cov_20.500000	59.6	20.9	11.8	22.9	-1.5	0	2.3	0	lipid metabolism.FA desaturation.omega 3 desaturase	"FAD8 (FATTY ACID DESATURASE 8); omega-3 fatty acid desaturase Encodes a temperature sensitive plastidic fatty acid desaturase. Identical to Temperature-sensitive omega-3 fatty acid desaturase, chloroplast precursor (EC 1.14.19.-) (FAD8) [Arabidopsis Thal"
MSGI1_48149	NODE_4832_length_254_cov_7.669291	2.4	0.3	17.1	2.9	0	0	-2.8	0	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	"protein kinase, putative  similar to CONNEXIN 32, kinase [Arabidopsis thaliana] (TAIR:AT4G35600.1); similar to Os02g0118200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045693.1); similar to H0409D10.5 [Oryza sativa (indica cultivar-group)] (GB:CAH"
MSGI1_111941	NODE_4834_length_114_cov_97.289474	42.5	35.7	16.4	32.2	0	0	1.4	0	protein.synthesis.elongation	"elongation factor 1-beta, putative / EF-1-beta, putative  Identical to Elongation factor 1-delta 2 (EF-1-delta 2) (Elongation factor 1B-beta 2) (eEF-1B beta 2) [Arabidopsis Thaliana] (GB:Q9SI20;GB:Q7GA96;GB:Q8LB45); similar to elongation factor 1-beta /"
MSGI1_74652	NODE_48341_length_172_cov_19.482557	8.5	11.9	0	0	0	0	0	4.6	protein.targeting.nucleus	"cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative  Identical to Importin-alpha re-exporter (Cellular apoptosis susceptibility protein homolog) (CAS) [Arabidopsis Thaliana] (GB:Q9ZPY7;GB:Q56WE2;GB:Q7GA14); similar"
MSGI1_74652	NODE_48341_length_172_cov_19.482557	8.5	11.9	0	0	0	0	0	4.6	stress.biotic	"cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative  Identical to Importin-alpha re-exporter (Cellular apoptosis susceptibility protein homolog) (CAS) [Arabidopsis Thaliana] (GB:Q9ZPY7;GB:Q56WE2;GB:Q7GA14); similar"
MSGI1_81656	NODE_48349_length_159_cov_29.138365	21.9	7.6	2.9	6.4	0	0	2.9	0	lipid metabolism.FA desaturation.omega 6 desaturase	"FAD2 (FATTY ACID DESATURASE 2); delta12-fatty acid dehydrogenase Major enzyme responsible for the synthesis of 18:2 fatty acids in the endoplasmic reticulum. Contains His-rich motifs, which contribute to the interaction with the electron donor cytochrome"
MSGI1_108511	NODE_48352_length_124_cov_18.419355	17.4	10.2	0	0	0	0	5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_22930	NODE_4836_length_457_cov_20.120350	0.1	0	56.1	0.4	0	-7.1	-9.1	0	cell wall.modification	"ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1) EXPANSIN-RELATED. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-like B1 precursor (AtEXLB1) (AtEXPR1) (At-EXPR1) (Ath- ExpBeta-3.1) (EXLB1) [Arab"
MSGI1_54758	NODE_4837_length_227_cov_59.277534	103.1	96.1	187.7	81.1	0	-1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_20188	NODE_48383_length_500_cov_6.740000	5.2	26.7	27.9	5.3	2.4	-2.4	-2.4	2.3	not assigned.unknown	not assigned.unknown
MSGI1_114309	NODE_48396_length_94_cov_45.436169	37.9	69	0.3	0.3	0	0	7	7.8	cell wall.cellulose synthesis.cellulose synthase	"CESA4 (CELLULASE SYNTHASE 4); transferase, transferring glycosyl groups Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Identical to Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC 2.4.1.12) (AtCesA-4) (Irregular xyl"
MSGI1_63656	NODE_48409_length_198_cov_14.095960	17.2	0.2	0.9	0	-6.4	0	4.3	0	not assigned.unknown	not assigned.unknown
MSGI1_49429	NODE_4842_length_248_cov_44.290321	39.4	13.6	14.3	11.3	-1.5	0	1.5	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	"photosystem II reaction center PsbP family protein  Identical to Thylakoid lumenal 25.6 kDa protein, chloroplast precursor [Arabidopsis Thaliana] (GB:P82538); similar to photosystem II reaction center PsbP family protein [Arabidopsis thaliana] (TAIR:AT2G"
MSGI1_111781	NODE_48440_length_115_cov_36.791306	30.5	1.1	11.4	4.3	-4.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_74204	NODE_48442_length_173_cov_14.364161	11.1	1.9	0.4	0	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_100132	NODE_48452_length_133_cov_14.571428	15.1	3.6	0.5	0	0	0	4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_116904	NODE_48463_length_71_cov_48.281689	31.4	9.3	61.6	5.7	-1.8	-3.4	0	0	"metal handling.binding, chelation and storage"	copper-binding family protein  similar to ATFP3 (Arabidopsis thaliana farnesylated protein 3) [Arabidopsis thaliana] (TAIR:AT5G63530.2); similar to PPAK motif; Heavy metal transport/detoxification protein [Medicago truncatula] (GB:ABE84491.1); contains In
MSGI1_108510	NODE_48475_length_124_cov_5.637097	2.5	2.1	10.5	17.1	0	0	0	-3	redox.ascorbate and glutathione.glutathione	"GSH2 (GLUTATHIONE SYNTHETASE 2); glutathione synthase Encodes a protein with similarity to glutathione synthetases, which catalyzes one of the early steps in glutathione biosynthesis. Two transcripts have been detected; the longer transcript is less abun"
MSGI1_120526	NODE_48480_length_61_cov_37.295082	16.8	6.5	2.8	2.5	0	0	2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_106533	NODE_48482_length_126_cov_10.388889	9.1	11.3	33	32.2	0	0	-1.9	0	protein.targeting.secretory pathway.vacuole	"vacuolar sorting receptor, putative  Identical to Vacuolar sorting receptor 7 precursor (AtVSR7) (Epidermal growth factor receptor-like protein 3) (AtELP3) (BP80-like protein f) (AtBP80f) (VSR7) [Arabidopsis Thaliana] (GB:Q8L7E3;GB:O49438); similar to va"
MSGI1_108509	NODE_48494_length_124_cov_16.540323	13.4	1.5	0.8	0.5	0	0	4.1	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_15360	NODE_48499_length_594_cov_8.446128	6.2	11.3	27.8	15.5	0	0	-2.2	0	cell wall	PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. Identical to Hevein-like protein precursor (HE
MSGI1_15360	NODE_48499_length_594_cov_8.446128	6.2	11.3	27.8	15.5	0	0	-2.2	0	stress.biotic	PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. Identical to Hevein-like protein precursor (HE
MSGI1_67096	NODE_48519_length_189_cov_30.275133	25.1	32.9	10.7	35	0	1.7	0	0	misc.cytochrome P450	"CYP93D1 (cytochrome P450, family 93, subfamily D, polypeptide 1); oxygen binding member of CYP93D similar to CYP712A1 (cytochrome P450, family 712, subfamily A, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G42250.1); similar to Cytochro"
MSGI1_120523	NODE_48522_length_61_cov_27.114754	13.8	18.5	0.4	0	0	0	5.1	5.2	amino acid metabolism.degradation.serine-glycine-cysteine group.cysteine	"ST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1); thiosulfate sulfurtransferase encodes a sulfurtransferase/rhodaneses, which belongs to a group of enzymes widely distributed in all three phyla that catalyze the transfer of sulfur from a donor to a thiophilic"
MSGI1_120522	NODE_48526_length_61_cov_27.901640	13.6	15.6	0	0	0	0	4.8	5	amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase	GAD (Glutamate decarboxylase 1); calmodulin binding Encodes one of two isoforms of glutamate decarboxylase. Identical to Glutamate decarboxylase 1 (EC 4.1.1.15) (GAD 1) (GAD1) [Arabidopsis Thaliana] (GB:Q42521;GB:Q9FFH9); similar to glutamate decarboxyla
MSGI1_90110	NODE_4857_length_146_cov_6.000000	0.2	0.7	5.4	12.6	0	0	0	-4.2	not assigned.unknown	not assigned.unknown
MSGI1_40111	NODE_48586_length_294_cov_29.639456	18.9	26.4	48.9	40.6	0	0	-1.4	0	cell wall	FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44380.1); similar to EDA28/MEE23 (embryo
MSGI1_40111	NODE_48586_length_294_cov_29.639456	18.9	26.4	48.9	40.6	0	0	-1.4	0	secondary metabolism.N misc.alkaloid-like	FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44380.1); similar to EDA28/MEE23 (embryo
MSGI1_40111	NODE_48586_length_294_cov_29.639456	18.9	26.4	48.9	40.6	0	0	-1.4	0	cell wall	FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44380.1); similar to EDA28/MEE23 (embryo
MSGI1_40111	NODE_48586_length_294_cov_29.639456	18.9	26.4	48.9	40.6	0	0	-1.4	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44380.1); similar to EDA28/MEE23 (embryo
MSGI1_20717	NODE_4859_length_489_cov_194.335373	147.1	78.1	44.8	101.7	0	1.2	1.7	0	mitochondrial electron transport / ATP synthesis.F1-ATPase	"ATP synthase beta chain 1, mitochondrial  Identical to ATP synthase subunit beta-1, mitochondrial precursor (EC 3.6.3.14) [Arabidopsis Thaliana] (GB:P83483;GB:Q8VX26;GB:Q9C5A8;GB:Q9C5B0); Identical to ATP synthase subunit beta-2, mitochondrial precursor"
MSGI1_47678	NODE_48597_length_256_cov_9.671875	9.9	26.7	61	56	0	0	-2.6	-1.1	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1); hydrolase, hydrolyzing O-glycosyl compounds  Identical to Probable glycosyltransferase At1g55740 (EC 2.4.1.-) [Arabidopsis Thaliana] (GB:Q84VX0;GB:Q9LFZ7); similar to ATSIP2 (ARABIDOPSIS THALIANA SEED IMBI"
MSGI1_92289	NODE_48602_length_143_cov_50.888111	23.4	38.3	130.5	57.5	0	-1.2	-2.5	0	misc.cytochrome P450	"CYP71B37 (cytochrome P450, family 71, subfamily B, polypeptide 37); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B37 (EC 1.14.-.-) (CYP71B37) [Arabidopsis Thaliana] (GB:Q9LIP3); similar to CYP71B36 (cytochrome P450, family 71, s"
MSGI1_120520	NODE_48608_length_61_cov_37.491802	19.4	2.9	37.1	2.5	-2.7	-3.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_62999	NODE_48621_length_200_cov_5.570000	8.2	6.4	15.2	1.5	0	-3.3	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	auxin-responsive family protein  similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G28085.1); similar to Auxin-induced protein 6B (GB:P33083); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676)
MSGI1_118136	NODE_48622_length_62_cov_44.258064	13.9	28	7.5	6.9	0	0	0	2	protein.postranslational modification	"protein kinase, putative  similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G26610.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G55910.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G4"
MSGI1_37292	NODE_4863_length_311_cov_48.006432	34.4	12.2	13.3	11.4	-1.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_43892	NODE_48640_length_274_cov_11.974453	13.5	13.7	0	0	0	0	4.8	4.8	not assigned.unknown	not assigned.unknown
MSGI1_98459	NODE_48660_length_135_cov_7.385185	7.5	13	0	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_120519	NODE_48676_length_61_cov_70.000000	33.6	18.7	110.9	18.5	0	-2.6	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_96898	NODE_48693_length_137_cov_9.087591	0.6	12.6	3.7	7.6	4.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_26699	NODE_4870_length_405_cov_57.182716	47.2	28.5	1.5	1.7	0	0	5	4.1	not assigned.unknown	not assigned.unknown
MSGI1_120516	NODE_48726_length_61_cov_19.786884	20	29.8	0	0	0	0	5.3	5.9	not assigned.unknown	not assigned.unknown
MSGI1_120514	NODE_48746_length_61_cov_91.983604	41	34.2	38.3	85.7	0	1.2	0	-1.3	protein.postranslational modification	"calmodulin, putative  similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT1G62820.1); similar to putative serine/threonine kinase [Vitis vinifera] (GB:AAO49473.1); similar to EF hand family protein [Solanum demissum] (GB:AAT40490.1); contains"
MSGI1_23774	NODE_4877_length_444_cov_19.551802	27.8	2.8	6.4	6.3	-3.3	0	2.1	0	signalling.receptor kinases.legume-lectin	"lectin protein kinase, putative  similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G53810.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98991.1); similar to lec"
MSGI1_23774	NODE_4877_length_444_cov_19.551802	27.8	2.8	6.4	6.3	-3.3	0	2.1	0	cell wall	"lectin protein kinase, putative  similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G53810.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98991.1); similar to lec"
MSGI1_115746	NODE_48776_length_81_cov_25.851852	17.5	7.7	0	0	0	0	5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_47024	NODE_4880_length_259_cov_32.250965	45.4	59.2	283.8	104	0	-1.4	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_18290	NODE_4880_length_533_cov_14.163227	1.9	4	2.7	25.5	0	3.2	0	-2.7	major CHO metabolism.synthesis.starch.transporter	"GPT2 (glucose-6-phosphate/phosphate translocator 2); antiporter/ glucose-6-phosphate transporter glucose6-Phosphate/phosphate transporter 2 Identical to Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor (GPT2) [Arabidopsis Thaliana] (GB"
MSGI1_18290	NODE_4880_length_533_cov_14.163227	1.9	4	2.7	25.5	0	3.2	0	-2.7	transport.metabolite transporters at the envelope membrane	"GPT2 (glucose-6-phosphate/phosphate translocator 2); antiporter/ glucose-6-phosphate transporter glucose6-Phosphate/phosphate transporter 2 Identical to Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor (GPT2) [Arabidopsis Thaliana] (GB"
MSGI1_120512	NODE_48801_length_61_cov_76.639343	56.9	59	11.6	41.6	0	1.8	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_59020	NODE_4881_length_212_cov_24.839622	13	38.6	48.4	40.6	1.6	0	-1.9	0	"misc.oxidases - copper, flavone etc."	"copper amine oxidase family protein  similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT4G12290.1); similar to amine oxidase [Canavalia lineata] (GB:AAD49420.1); contains InterPro domain Copper amine oxidase; (InterPro:IPR000269)"
MSGI1_75643	NODE_48847_length_170_cov_9.758823	11.7	77.8	13.5	36.3	2.7	1.4	0	1.1	not assigned.unknown	not assigned.unknown
MSGI1_52891	NODE_48850_length_234_cov_20.213675	14.4	48.1	44.1	38.4	1.7	0	-1.6	0	amino acid metabolism.synthesis.aromatic aa.phenylalanine.arogenate dehydratase / prephenate dehydratase	"prephenate dehydratase family protein  similar to PD1 (PREPHENATE DEHYDRATASE 1), prephenate dehydratase [Arabidopsis thaliana] (TAIR:AT2G27820.1); similar to prephenate dehydratase [Ipomoea trifida] (GB:AAS79603.1); contains InterPro domain Prephenate d"
MSGI1_51045	NODE_48873_length_241_cov_18.626556	9.8	16.3	0	0	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_112511	NODE_48882_length_109_cov_11.935780	8.9	9.7	17.8	34.4	0	0	0	-1.8	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_112511	NODE_48882_length_109_cov_11.935780	8.9	9.7	17.8	34.4	0	0	0	-1.8	development.unspecified	nodulin family protein  similar to nodulin family protein [Arabidopsis thaliana] (TAIR:AT2G16660.1); similar to nodulin-like protein [Poncirus trifoliata] (GB:AAN62343.1); similar to Nodulin-like [Medicago truncatula] (GB:ABE93291.1); contains InterPro do
MSGI1_120508	NODE_48891_length_61_cov_62.557377	41	4.1	0.4	0	-3.3	0	6.7	0	not assigned.unknown	not assigned.unknown
MSGI1_67093	NODE_48893_length_189_cov_27.275133	21.7	32.2	0	0	0	0	5.4	6	not assigned.unknown	not assigned.unknown
MSGI1_79334	NODE_48939_length_163_cov_13.349693	16.5	17.4	0.2	0	0	0	6.4	5.1	not assigned.unknown	not assigned.unknown
MSGI1_74646	NODE_48957_length_172_cov_26.488373	27	27.2	7.7	11.4	0	0	1.8	0	protein.targeting.nucleus	"importin alpha-2, putative (IMPA-2)  similar to AT-IMP (Arabidopsis thaliana importin alpha), protein transporter [Arabidopsis thaliana] (TAIR:AT3G06720.2); similar to putative importin alpha [Trifolium pratense] (GB:BAE71209.1); similar to importin alph"
MSGI1_120505	NODE_4896_length_61_cov_11.229508	28	0.5	4.8	0	-5.8	0	2.5	0	RNA.regulation of transcription.bZIP transcription factor family	bZIP transcription factor family protein  similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G42380.2); similar to bZIP transcription factor bZIP50 [Glycine max] (GB:ABI34644.1); contains InterPro domain Eukaryotic transc
MSGI1_109532	NODE_48965_length_123_cov_50.252033	25.2	20.9	2.6	6.5	0	0	3.3	0	stress.biotic	"transferase family protein  similar to CHAT (ACETYL COA:(Z)-3-HEXEN-1-OL ACETYLTRANSFERASE), acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase [Arabidopsis thaliana] (TAIR:AT3G03480.1); similar to benzoyl coenzyme A: benzyl alcohol benzoyl transferase [Petun"
MSGI1_12553	NODE_4897_length_672_cov_23.069941	28.4	0.1	10.4	0	-8.1	0	0	0	RNA.regulation of transcription.bZIP transcription factor family	bZIP transcription factor family protein  similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G58120.1); similar to bZIP transcription factor bZIP50 [Glycine max] (GB:ABI34644.1); contains InterPro domain Eukaryotic transc
MSGI1_39408	NODE_48989_length_298_cov_6.285235	18.3	5.7	2.7	3.1	0	0	2.8	0	signalling.calcium	calcium-binding EF hand family protein  similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G28830.1); similar to 39 kDa EF-Hand containing protein [Solanum tuberosum] (GB:CAA04670.1); contains InterPro domain EF-Hand type; (
MSGI1_25423	NODE_48989_length_421_cov_17.144894	18.8	31.2	48	25.2	0	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_95343	NODE_48999_length_139_cov_15.294964	20.8	3.7	2.4	1.5	-2.5	0	3.1	0	hormone metabolism.gibberelin.synthesis-degradation.ent-kaurenoic acid hydroxylase/oxygenase	KAO2 (ENT-KAURENOIC ACID HYDROXYLASE 2); oxygen binding ent-kaurenoic acid hydroxylase (KAO2) Identical to Ent-kaurenoic acid oxidase 2 (EC 1.14.13.79) (AtKAO2) (Cytochrome P450 88A4) (KAO2) [Arabidopsis Thaliana] (GB:Q9C5Y2;GB:Q9ZV72); similar to CYP88A
MSGI1_67518	NODE_49002_length_188_cov_61.414894	43.7	49	15.2	18.5	0	0	1.5	1.4	not assigned.unknown	not assigned.unknown
MSGI1_68738	NODE_49011_length_185_cov_12.324325	14.8	25.7	3.5	3.3	0	0	0	3	not assigned.unknown	not assigned.unknown
MSGI1_120501	NODE_49015_length_61_cov_21.819672	11.9	6.1	0	0	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_26253	NODE_49027_length_411_cov_10.523114	7.5	14.3	0.1	0.7	0	0	0	4.4	transport.unspecified cations	organic cation transporter-related  similar to transporter-related [Arabidopsis thaliana] (TAIR:AT1G79360.1); similar to putative organic cation transporter [Oryza sativa (japonica cultivar-group)] (GB:BAC83382.1); contains InterPro domain Major facilitat
MSGI1_36015	NODE_49030_length_320_cov_16.028126	22.2	22.9	61.1	24.1	0	-1.3	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_22562	NODE_49035_length_462_cov_7.612554	10.6	10.6	0	0.1	0	0	0	6.7	not assigned.unknown	not assigned.unknown
MSGI1_76668	NODE_49041_length_168_cov_7.904762	4.6	13.5	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_102811	NODE_49053_length_130_cov_18.692308	21.6	19.7	0.3	0	0	0	6.2	5.3	signalling.receptor kinases.leucine rich repeat III	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G68400.1); similar to putative receptor kinase [Malus x domestica] (GB:ABA82081.1); similar"
MSGI1_120495	NODE_49079_length_61_cov_21.459017	11.6	9.3	0	0	0	0	4.5	0	protein.synthesis.initiation	"eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative  similar to EIF2 ALPHA (eukaryotic translation initiation factor 2 alpha subunit), RNA binding [Arabidopsis thaliana] (TAIR:AT5G05470.1); similar to"
MSGI1_41766	NODE_491_length_285_cov_14.136842	63	40.8	29.3	46.9	0	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_34925	NODE_49105_length_328_cov_19.228659	16.9	54.6	79.1	60.9	1.7	0	-2.2	0	"misc.oxidases - copper, flavone etc."	"copper amine oxidase, putative  similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G43670.1); similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT1G62810.1); similar to amine oxidase [Canavalia lineata] (GB:AAD"
MSGI1_120492	NODE_49132_length_61_cov_9.409836	4.3	6.3	28.7	9.9	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_111301	NODE_4914_length_119_cov_331.865540	274	384.6	0.8	0	0	0	8.4	9.6	not assigned.unknown	not assigned.unknown
MSGI1_52621	NODE_49140_length_235_cov_22.863831	20.8	80.2	48.1	52	1.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_75640	NODE_49146_length_170_cov_6.147059	4.4	24.4	12	7.6	2.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_84127	NODE_4915_length_155_cov_64.103226	19.7	32.4	0.7	0.2	0	0	4.8	7.3	transport.nucleotides	permease-related  similar to permease-related [Arabidopsis thaliana] (TAIR:AT4G13800.1); similar to OSJNBa0069D17.4 [Oryza sativa (japonica cultivar-group)] (GB:CAD40575.1); similar to Os05g0424800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055595
MSGI1_113804	NODE_49153_length_99_cov_33.808083	29.1	24.2	6.7	25.2	0	1.9	2.1	0	"misc.gluco-, galacto- and mannosidases"	glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G18080.1); similar to beta-mannosidase enzyme [Lycopersicon esculentum] (GB:AAL37714.1); similar to beta-mannosidase 3 [Oncidium Gower Ram
MSGI1_114434	NODE_49169_length_93_cov_37.010754	30	26.1	8.2	12.1	0	0	1.9	0	protein.synthesis.initiation	"eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative  Identical to DEAD-box ATP-dependent RNA helicase 2 (EC 3.6.1.-) (RH2) [Arabidopsis Thaliana] (GB:Q94A52;GB:Q9ZS14); similar to eukaryotic translat"
MSGI1_114434	NODE_49169_length_93_cov_37.010754	30	26.1	8.2	12.1	0	0	1.9	0	RNA.processing	"eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative  Identical to DEAD-box ATP-dependent RNA helicase 2 (EC 3.6.1.-) (RH2) [Arabidopsis Thaliana] (GB:Q94A52;GB:Q9ZS14); similar to eukaryotic translat"
MSGI1_112510	NODE_4917_length_109_cov_319.449554	277.6	70.4	20.1	77	-2	1.9	3.8	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_43891	NODE_49175_length_274_cov_6.799270	6.1	8.2	16.2	1.8	0	-3.2	0	0	stress.biotic	disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT5G27060.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G11080.1); similar to disease resistance family protei
MSGI1_25314	NODE_49194_length_423_cov_11.529551	10.6	10.8	0.2	0.1	0	0	5.7	6.8	not assigned.unknown	not assigned.unknown
MSGI1_78230	NODE_49199_length_165_cov_9.539394	14.4	20.2	35.1	10.9	0	-1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_41021	NODE_49214_length_289_cov_20.546713	11.1	5.2	0.4	1.1	0	0	4.8	0	amino acid metabolism.degradation.glutamate family.proline	"proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative  similar to ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5, PROLINE OXIDASE), proline dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G30775.1); similar to proline dehydrogenase"
MSGI1_37777	NODE_49230_length_308_cov_36.181820	33.8	7.5	12.3	8.4	-2.2	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_37777	NODE_49230_length_308_cov_36.181820	33.8	7.5	12.3	8.4	-2.2	0	0	0	secondary metabolism.flavonoids.flavonols	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT5G20400.1); similar to ethylene-forming-enzyme-like dioxygenase [Prunus armeniaca] (GB:AAB88878.1); contain"
MSGI1_45989	NODE_4924_length_264_cov_9.287879	3.9	13.6	54.4	10.3	0	-2.4	-3.8	0	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G25560.1); similar to PGPD14 [Petunia x hybrida] (GB:AAD02556.1); contains InterPro domain Zinc finger, CH"
MSGI1_30626	NODE_4924_length_363_cov_64.033058	168.9	146.9	72.2	144.2	0	1	1.2	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S20 (RPS20B)  Identical to 40S ribosomal protein S20-2 (RPS20B) [Arabidopsis Thaliana] (GB:Q9STY6); similar to 40S ribosomal protein S20 (RPS20A) [Arabidopsis thaliana] (TAIR:AT3G45030.1); similar to 40S ribosomal protein S20 (RPS20
MSGI1_88754	NODE_49241_length_148_cov_21.905405	22	4.2	0.2	0.2	-2.4	0	6.8	0	hormone metabolism.gibberelin.synthesis-degradation.ent-kaurenoic acid hydroxylase/oxygenase	"CYP88A3 (ENT-KAURENOIC ACID HYDROXYLASE 1); oxygen binding Encodes an ent-kaurenoic acid hydroxylase, a  member of the CYP88A cytochrome p450 family. Identical to Ent-kaurenoic acid oxidase 1 (EC 1.14.13.79) (AtKAO1) (Cytochrome P450 88A3) (KAO1) [Arabid"
MSGI1_36013	NODE_49257_length_320_cov_14.896875	2.6	6.8	56.8	5.5	0	-3.4	-4.4	0	development.unspecified	seven in absentia (SINA) family protein  Identical to E3 ubiquitin-protein ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5) (SINAT5) [Arabidopsis Thaliana] (GB:Q8S3N1;GB:Q8GYS3;GB:Q9FK06); similar to seven in absentia (SINA) family protein [Arabi
MSGI1_7458	NODE_4926_length_885_cov_11.927684	19.8	0.7	5.8	1.5	-4.8	0	0	0	protein.postranslational modification	ATMYC2 (JASMONATE INSENSITIVE 1); DNA binding / transcription factor Encodes a 68 kD MYC-related transcriptional activator with a typical DNA binding domain of a basic region helix-loop-helix leucine zipper motif. Its transcription is induced by dehydrat
MSGI1_7458	NODE_4926_length_885_cov_11.927684	19.8	0.7	5.8	1.5	-4.8	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_7458	NODE_4926_length_885_cov_11.927684	19.8	0.7	5.8	1.5	-4.8	0	0	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	ATMYC2 (JASMONATE INSENSITIVE 1); DNA binding / transcription factor Encodes a 68 kD MYC-related transcriptional activator with a typical DNA binding domain of a basic region helix-loop-helix leucine zipper motif. Its transcription is induced by dehydrat
MSGI1_114433	NODE_49274_length_93_cov_37.344086	16.9	36.4	15.8	8.5	0	0	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_94566	NODE_49292_length_140_cov_17.892857	17.1	2.2	6.3	2	-3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_120480	NODE_493_length_61_cov_36.327869	2.4	19.6	0	0	3	0	0	5.3	not assigned.unknown	not assigned.unknown
MSGI1_111779	NODE_49310_length_115_cov_13.660870	0.4	13.5	7.5	1.7	5.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_120477	NODE_49323_length_61_cov_37.590164	20.7	19.1	6	3.7	0	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_35460	NODE_49326_length_324_cov_9.222222	28.1	5.7	0	0	-2.3	0	5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_15981	NODE_49340_length_578_cov_6.572664	5.5	10.6	0.8	0.2	0	0	0	5.7	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G11250.1); similar to RPP1 (RECOGNITION OF PERONOSPORA PARASITICA 1) [Arabidopsis thaliana] (TAI"
MSGI1_66246	NODE_49360_length_191_cov_15.769633	17.5	7	15.4	25.4	0	0	0	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_54991	NODE_49373_length_226_cov_13.420354	16.5	1	7.8	5.9	-4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_46838	NODE_49373_length_260_cov_8.430769	26	1.6	86.2	1.6	-4	-5.8	-1.7	0	hormone metabolism.gibberelin.induced-regulated-responsive-activated	"gibberellin-regulated family protein  similar to gibberellin-regulated family protein [Arabidopsis thaliana] (TAIR:AT2G39540.1); similar to snakin-1 [Solanum tuberosum] (GB:CAC44032.1); contains InterPro domain Growth factor, cystine knot; (InterPro:IPR0"
MSGI1_17330	NODE_4938_length_551_cov_38.297642	29.1	4.8	0	0	-2.6	0	5.9	0	not assigned.unknown	not assigned.unknown
MSGI1_76143	NODE_49383_length_169_cov_5.437870	3.2	5.3	22.4	4.4	0	-2.3	-2.8	0	protein.degradation.aspartate protease	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G51330.1); similar to Os04g0228000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052287.1); similar to H0209A05.1 [Oryza sativa (indica cul
MSGI1_115833	NODE_4939_length_80_cov_207.137497	136.2	107.6	41.8	55.6	0	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_96893	NODE_49390_length_137_cov_26.627737	2.1	20.6	7.4	10.9	3.3	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_91569	NODE_49393_length_144_cov_9.645833	5.5	9.3	28.4	8.1	0	-1.8	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_100124	NODE_494_length_133_cov_80.180450	77.2	116.4	131.7	60	0	-1.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_70977	NODE_49406_length_180_cov_17.672222	9.9	8.8	22	37.1	0	0	0	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_51843	NODE_49417_length_238_cov_19.273109	19.4	23.4	0.5	0	0	0	5.3	5.5	not assigned.unknown	not assigned.unknown
MSGI1_36693	NODE_49420_length_315_cov_7.200000	5.1	8.6	6.1	22.9	0	1.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_75635	NODE_4945_length_170_cov_38.252941	17.3	13.4	0.6	0.2	0	0	4.8	6.1	not assigned.unknown	not assigned.unknown
MSGI1_59593	NODE_49454_length_210_cov_5.047619	5.9	3.8	30.8	2.2	0	-3.8	-2.4	0	minor CHO metabolism.raffinose family.raffinose synthases.known	"SIP1 (SEED IMBIBITION 1-LIKE); galactinol-sucrose galactosyltransferase/ hydrolase, hydrolyzing O-glycosyl compounds Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount o"
MSGI1_54756	NODE_4946_length_227_cov_90.207047	56.2	76.1	0.5	0.2	0	0	6.8	8.6	not assigned.unknown	not assigned.unknown
MSGI1_65138	NODE_49477_length_194_cov_16.041237	17.5	14.1	0.2	0	0	0	6.5	4.8	not assigned.unknown	not assigned.unknown
MSGI1_37436	NODE_49482_length_310_cov_14.393548	14.5	8.9	23.8	4.2	0	-2.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_29785	NODE_4949_length_371_cov_300.797852	119.2	63.2	43.8	53	0	0	1.4	0	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2A.4 (HTA12) [Arabidopsis Thaliana] (GB:Q9LZ46); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT5G59870.1); similar to Histone H2A (GB:Q9M531); contains InterPro domain Histone-fold;"
MSGI1_63348	NODE_49496_length_199_cov_14.924623	17.3	14	380	25.4	0	-3.9	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_113609	NODE_495_length_101_cov_39.900990	16.9	31.6	9.3	7.1	0	0	0	2.2	not assigned.unknown	not assigned.unknown
MSGI1_26609	NODE_49501_length_406_cov_11.694581	14	0.5	12.7	0.9	-4.8	-3.8	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_26609	NODE_49501_length_406_cov_11.694581	14	0.5	12.7	0.9	-4.8	-3.8	0	0	development.unspecified	"family II extracellular lipase 3 (EXL3)  similar to family II extracellular lipase 1 (EXL1) [Arabidopsis thaliana] (TAIR:AT1G75880.2); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE88162.1); contains InterPro domain Lipolytic enzyme,"
MSGI1_70093	NODE_49507_length_182_cov_9.329670	11.5	13.6	0.8	1.2	0	0	0	3.5	not assigned.unknown	not assigned.unknown
MSGI1_13158	NODE_4951_length_653_cov_32.969372	0.1	0.1	88.5	0.1	0	-9.8	-9.8	0	minor CHO metabolism.raffinose family.galactinol synthases.known	"ATGOLS2 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 2); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  similar to ATGOLS3 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 3), transferase, transferring glycosyl groups / trans"
MSGI1_120461	NODE_49515_length_61_cov_36.245903	11.7	25.9	1.6	0	0	0	0	5.7	not assigned.unknown	not assigned.unknown
MSGI1_120460	NODE_49517_length_61_cov_45.147541	40.5	35.6	16.4	21.8	0	0	1.3	0	RNA.regulation of transcription.unclassified	zinc finger (DHHC type) family protein  similar to zinc finger (DHHC type) family protein [Arabidopsis thaliana] (TAIR:AT5G41060.1); similar to Os09g0508300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063622.1); similar to Os08g0535400 [Oryza sati
MSGI1_93816	NODE_49541_length_141_cov_10.255320	5.8	10.8	0	0	0	0	0	4.4	not assigned.unknown	not assigned.unknown
MSGI1_47440	NODE_49544_length_257_cov_6.509727	7.9	3	100.3	7.1	0	-3.8	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_117408	NODE_4960_length_67_cov_43.074627	28.6	4.3	7.2	25.9	-2.7	1.8	2	-2.6	not assigned.unknown	not assigned.unknown
MSGI1_33927	NODE_4962_length_335_cov_73.910446	77.9	2.9	13.1	5.1	-4.7	0	2.6	0	lipid metabolism.FA synthesis and FA elongation.acyl coa ligase	acyl-activating enzyme 12 (AAE12)  similar to acyl-activating enzyme 11 (AAE11) [Arabidopsis thaliana] (TAIR:AT1G66120.1); similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT1G68270.1); similar to AMP-dependent s
MSGI1_22473	NODE_4963_length_463_cov_118.807777	68.2	19.7	26.9	39.1	-1.8	0	1.3	0	PS.lightreaction.other electron carrier (ox/red).ferredoxin	"FED A (FERREDOXIN 2); electron carrier/ iron ion binding encodes a ferredoxin gene Identical to Ferredoxin-1, chloroplast precursor (PETF1) [Arabidopsis Thaliana] (GB:P16972); similar to ATFD1 (FERREDOXIN 1), electron carrier/ iron ion binding [Arabidops"
MSGI1_34517	NODE_49671_length_331_cov_13.009064	5.1	10	28.1	13.7	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_68737	NODE_49767_length_185_cov_11.037838	12.1	1.7	0	0	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_38219	NODE_4977_length_305_cov_570.363953	344.8	95.8	456.6	575.1	-1.8	0	0	-2.6	TCA / org. transformation.carbonic anhydrases	"CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding  Identical to Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase) (CA1) [Arabidopsis Thaliana] (GB:P27140;GB:Q8RWW2;GB:Q93VR8); similar to CA2 (BETA CARBONIC A"
MSGI1_79923	NODE_49777_length_162_cov_5.444445	1.5	7.5	2	15.1	0	2.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_30005	NODE_49785_length_369_cov_18.102982	6.2	24.3	6.4	15.9	2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_55529	NODE_49787_length_224_cov_29.183035	25.8	19.1	0	0	0	0	5.7	5.3	not assigned.unknown	not assigned.unknown
MSGI1_17119	NODE_498_length_555_cov_70.086487	53.9	18.5	11.6	12.6	-1.5	0	2.2	0	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2AXb (HTA3) [Arabidopsis Thaliana] (GB:Q9S9K7); Identical to Probable histone H2AXa (HTA5) [Arabidopsis Thaliana] (GB:O04848;GB:Q8LAC0); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:A"
MSGI1_120458	NODE_49808_length_61_cov_28.475410	10.4	15.3	0	0.4	0	0	0	5.3	not assigned.unknown	not assigned.unknown
MSGI1_97690	NODE_49819_length_136_cov_22.125000	7.6	26.9	57.5	5.9	1.8	-3.3	-2.9	2.2	not assigned.unknown	not assigned.unknown
MSGI1_105560	NODE_4983_length_127_cov_29.188976	27.8	22.7	34.1	65.6	0	0.9	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_70513	NODE_4985_length_181_cov_137.983429	108.7	60.3	10	24.6	0	0	3.4	1.3	protein.synthesis.misc ribososomal protein	"RPL27A (RIBOSOMAL PROTEIN L27A); structural constituent of ribosome Encodes a ribosomal protein L27A, a constituent of the large subunit of the ribosomal complex.  Regulated by TCP20. Identical to 60S ribosomal protein L27a-2 (RPL27AB) [Arabidopsis Thali"
MSGI1_77690	NODE_4987_length_166_cov_9.144578	14.1	11.8	1.7	1.5	0	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_59291	NODE_4988_length_211_cov_5.791469	4.9	1.7	29.8	10.3	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_30624	NODE_4994_length_363_cov_13.134986	3.5	16.9	0	0	0	0	0	5.1	not assigned.unknown	not assigned.unknown
MSGI1_52619	NODE_49954_length_235_cov_15.434043	1.9	21	2.5	1.7	3.5	0	0	3.6	not assigned.unknown	not assigned.unknown
MSGI1_116288	NODE_49957_length_76_cov_43.973682	9.8	12.7	2.1	0.7	0	0	0	4.2	not assigned.unknown	not assigned.unknown
MSGI1_120454	NODE_49958_length_61_cov_33.754097	24.8	3.2	0.4	0.8	-3	0	6	0	not assigned.unknown	not assigned.unknown
MSGI1_92279	NODE_49964_length_143_cov_17.601398	8.1	15.4	0.5	0	0	0	0	4.9	not assigned.unknown	not assigned.unknown
MSGI1_100117	NODE_4997_length_133_cov_234.571426	4.8	100.3	21.8	120.4	4.4	2.5	-2.2	0	cell wall	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_100117	NODE_4997_length_133_cov_234.571426	4.8	100.3	21.8	120.4	4.4	2.5	-2.2	0	protein.degradation.subtilases	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_117978	NODE_4997_length_63_cov_232.349213	149.6	153.2	0	0	0	0	8.2	8.3	not assigned.unknown	not assigned.unknown
MSGI1_64431	NODE_50035_length_196_cov_11.214286	0.8	11.4	24.5	1.2	0	-4.4	-4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_120451	NODE_50065_length_61_cov_23.524590	7.8	10.8	29.1	11.5	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_68736	NODE_50079_length_185_cov_9.837838	2.6	5.2	24.4	7.3	0	0	-3.2	0	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS11 (Arabidopsis thaliana trehalose phosphatase/synthase 11); transferase, transferring glycosyl groups Encodes an enzyme putatively involved in trehalose biosynthesis.  The protein has a trehalose synthase (TPS)-like domain that may or may not be ac"
MSGI1_45101	NODE_5016_length_268_cov_20.007463	12.7	12.4	0	0	0	0	4.7	4.6	not assigned.unknown	not assigned.unknown
MSGI1_3455	NODE_5019_length_1253_cov_71.334396	9.9	24.1	35.3	18.8	0	0	-1.8	0	protein.postranslational modification	"protein kinase, putative  similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G40540.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06440.1); contai"
MSGI1_3455	NODE_5019_length_1253_cov_71.334396	9.9	24.1	35.3	18.8	0	0	-1.8	0	cell wall	"protein kinase, putative  similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G40540.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06440.1); contai"
MSGI1_53104	NODE_5019_length_233_cov_7.536481	12.2	0.7	3	2.2	-4.1	0	0	0	amino acid metabolism.degradation.histidine	"EMB1075 (EMBRYO DEFECTIVE 1075); carboxy-lyase  similar to GAD2 (GLUTAMATE DECARBOXYLASE 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G65960.1); similar to serine decarboxylase [Brassica napus] (GB:BAA78331.1); similar to Os02g0541300 [Oryza sa"
MSGI1_53104	NODE_5019_length_233_cov_7.536481	12.2	0.7	3	2.2	-4.1	0	0	0	lipid metabolism.Phospholipid synthesis	"EMB1075 (EMBRYO DEFECTIVE 1075); carboxy-lyase  similar to GAD2 (GLUTAMATE DECARBOXYLASE 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G65960.1); similar to serine decarboxylase [Brassica napus] (GB:BAA78331.1); similar to Os02g0541300 [Oryza sa"
MSGI1_31591	NODE_502_length_354_cov_284.872894	171.5	62.9	96.5	212.9	-1.4	1.1	0	-1.8	cell wall.modification	"ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thali"
MSGI1_28585	NODE_5021_length_384_cov_45.570312	25.3	14.9	1.4	2.7	0	0	4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_85401	NODE_50225_length_153_cov_16.960785	25.2	10.2	45	36.1	0	0	0	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_76665	NODE_50229_length_168_cov_15.553572	40.7	8.4	52	28.3	-2.3	0	0	-1.8	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX3 (Lipoxygenase 3); iron ion binding / lipoxygenase Lipoxygenase similar to lipoxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G67560.1); similar to lipoxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G72520.1); similar to LOX2 (LIPOXYGENA"
MSGI1_52888	NODE_5023_length_234_cov_51.662392	46.4	64.3	32.4	85.8	0	1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_120448	NODE_50230_length_61_cov_6.524590	19.8	3.1	0.4	0	-2.7	0	5.6	0	not assigned.unknown	not assigned.unknown
MSGI1_12930	NODE_5024_length_660_cov_25.612122	18.2	54.1	13.4	41	1.6	1.6	0	0	hormone metabolism.auxin.signal transduction	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_12930	NODE_5024_length_660_cov_25.612122	18.2	54.1	13.4	41	1.6	1.6	0	0	transport.misc	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_12930	NODE_5024_length_660_cov_25.612122	18.2	54.1	13.4	41	1.6	1.6	0	0	transport.amino acids	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_93017	NODE_50265_length_142_cov_9.521127	5.9	4.3	24.4	2.5	0	-3.3	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_90099	NODE_5027_length_146_cov_119.260277	2.4	1.8	152.4	0.5	0	-8.3	-6	0	not assigned.unknown	not assigned.unknown
MSGI1_75129	NODE_5027_length_171_cov_13.578947	9.4	19.8	1	1.7	0	0	0	3.5	not assigned.unknown	not assigned.unknown
MSGI1_70091	NODE_50285_length_182_cov_12.653846	17.8	16.6	2	2.9	0	0	3.2	0	stress.biotic	leucine-rich repeat family protein  similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT4G13810.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT4G13820.1);
MSGI1_17283	NODE_5031_length_552_cov_52.913044	48	43.7	21.4	31.1	0	0	1.2	0	RNA.regulation of transcription.unclassified	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT1G25510.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japoni
MSGI1_120446	NODE_5032_length_61_cov_112.770493	59.5	42.3	18	38.7	0	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_75630	NODE_50326_length_170_cov_4.729412	19.1	9.1	2.3	2.2	0	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_25180	NODE_5033_length_425_cov_107.367058	72.8	109.3	31.7	57.8	0	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_66661	NODE_50333_length_190_cov_11.515789	0.4	7.7	47.1	4.6	0	-3.4	-6.9	0	not assigned.unknown	not assigned.unknown
MSGI1_102807	NODE_5035_length_130_cov_31.092308	31.7	70	35.8	64	1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_62243	NODE_50363_length_202_cov_6.420792	14.6	1.2	5.7	2.3	-3.6	0	0	0	"misc.gluco-, galacto- and mannosidases"	"glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT2G44450.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE86373.1); contains InterPro domain 6-phospho-beta-galacto"
MSGI1_101048	NODE_50370_length_132_cov_15.803030	5.4	13.7	0.8	0.5	0	0	0	4.8	RNA.regulation of transcription.MYB-related transcription factor family	DNA-binding family protein  similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G47390.1); similar to MYB transcription factor MYB138 [Glycine max] (GB:ABH02859.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287)
MSGI1_66659	NODE_504_length_190_cov_33.205265	4.4	42.3	31.9	41.3	3.3	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_120443	NODE_50422_length_61_cov_10.360656	22	7.2	2.8	4.1	0	0	3	0	not assigned.unknown	not assigned.unknown
MSGI1_59927	NODE_5045_length_209_cov_122.267944	68.3	28.9	27	19.5	-1.2	0	1.3	0	cell wall.cell wall proteins.LRR	"leucine-rich repeat family protein / extensin family protein  similar to LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2), protein binding / structural constituent of cell wall [Arabidopsis thaliana] (TAIR:AT1G62440.1); similar to leucine-rich repeat family protein"
MSGI1_78743	NODE_50455_length_164_cov_7.731707	12.3	0.1	5.6	0	-6.9	0	0	0	cell wall.pectin*esterases.misc	pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT5G51490.1); similar to pectinesterase (EC 3.1.1.11) PECS-c2 - sweet orange (GB:T10494); similar to Pectinesterase-2 precursor (Pectin methylesterase) (
MSGI1_66658	NODE_50461_length_190_cov_6.842105	14.5	8.9	0.6	0.6	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_3390	NODE_5048_length_1265_cov_50.566799	36.7	5.7	8.3	11.1	-2.7	0	2.1	0	secondary metabolism.isoprenoids.terpenoids	terpene synthase/cyclase family protein  similar to lyase/ magnesium ion binding [Arabidopsis thaliana] (TAIR:AT4G16730.1); similar to 24349 (GB:AAD21414.1); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterP
MSGI1_3390	NODE_5048_length_1265_cov_50.566799	36.7	5.7	8.3	11.1	-2.7	0	2.1	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_23013	NODE_5051_length_456_cov_29.986841	29.9	53.6	69.8	119.7	0	0	-1.2	-1.2	C1-metabolism	"FDH (FORMATE DEHYDROGENASE); NAD binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor Encodes a NAD-dependent formate dehydrogenase. Identical to Formate dehydrogenase, mitochondrial precursor (EC 1.2."
MSGI1_89431	NODE_50520_length_147_cov_5.795918	0.3	6.8	11.9	3.6	0	0	-5.3	0	not assigned.unknown	not assigned.unknown
MSGI1_77689	NODE_50543_length_166_cov_8.789157	11	0.5	3.2	0	-4.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_120441	NODE_5057_length_61_cov_198.901642	107.4	43.7	83.4	27.2	-1.3	-1.6	0	0	cell wall	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_120441	NODE_5057_length_61_cov_198.901642	107.4	43.7	83.4	27.2	-1.3	-1.6	0	0	protein.degradation.subtilases	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_40649	NODE_50586_length_291_cov_23.714777	5.1	17.5	6.8	3.1	0	0	0	2.5	transport.potassium	potassium channel tetramerisation domain-containing protein  similar to potassium channel tetramerisation domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G09030.1); similar to BTB/POZ [Medicago truncatula] (GB:ABD28655.1); contains InterPro doma
MSGI1_120439	NODE_506_length_61_cov_64.704918	27	8.6	14	31.3	0	0	0	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_5007	NODE_5060_length_1059_cov_49.259678	19.9	14.4	3	4.5	0	0	2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_74641	NODE_50637_length_172_cov_7.843023	11.7	0.4	4.6	1.9	-4.9	0	0	0	"lipid metabolism.'exotics' (steroids, squalene etc)"	sulfotransferase family protein  similar to sulfotransferase family protein [Arabidopsis thaliana] (TAIR:AT5G07000.1); similar to Sulfotransferase [Medicago truncatula] (GB:ABE88692.1); contains InterPro domain Sulfotransferase; (InterPro:IPR000863)
MSGI1_90096	NODE_50657_length_146_cov_11.623287	13	11.6	47.4	8.2	0	-2.5	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_120436	NODE_50693_length_61_cov_3.950820	4.3	60.4	0	0	3.8	0	0	6.9	not assigned.unknown	not assigned.unknown
MSGI1_96887	NODE_507_length_137_cov_173.868607	85.1	33.1	33.6	77.5	-1.4	1.2	1.3	-1.2	misc.UDP glucosyl and glucoronyl transferases	UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22360.1); similar to UDP-glycosyltransferase 85A8 [Stevia rebaudiana] (GB:AAR06913.1); contains
MSGI1_36691	NODE_50708_length_315_cov_10.542857	7.9	33.9	9.8	28.2	2.1	0	0	0	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G09970.1); similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine ki"
MSGI1_36691	NODE_50708_length_315_cov_10.542857	7.9	33.9	9.8	28.2	2.1	0	0	0	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G09970.1); similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine ki"
MSGI1_111443	NODE_50724_length_118_cov_34.389832	32.2	35.6	0	0	0	0	6	6.2	stress.biotic	"ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19); ATPase, coupled to transmembrane movement of substances / auxin efflux transporter Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates"
MSGI1_111443	NODE_50724_length_118_cov_34.389832	32.2	35.6	0	0	0	0	6	6.2	transport.ABC transporters and multidrug resistance systems	"ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19); ATPase, coupled to transmembrane movement of substances / auxin efflux transporter Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates"
MSGI1_65874	NODE_50725_length_192_cov_8.338542	22.2	0.3	5	0	-6.2	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_35712	NODE_50726_length_322_cov_20.322981	24.6	7.7	33.1	9.1	0	-1.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_120431	NODE_50728_length_61_cov_39.508198	19.6	20.1	4	5.4	0	0	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_65135	NODE_50731_length_194_cov_13.010309	18.5	9.8	3.2	2.2	0	0	2.5	0	stress.biotic	disease resistance-responsive family protein / dirigent family protein  similar to disease resistance-responsive family protein / dirigent family protein [Arabidopsis thaliana] (TAIR:AT4G23690.1); similar to dirigent-like protein [Thuja plicata] (GB:AAF25
MSGI1_95329	NODE_50741_length_139_cov_6.985611	4	99.3	25	148.2	4.6	2.6	-2.6	0	protein.degradation.subtilases	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_40106	NODE_50742_length_294_cov_40.731293	5.5	25.2	23	24.3	2.2	0	0	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1); hydrolase, hydrolyzing O-glycosyl compounds  Identical to Probable glycosyltransferase At1g55740 (EC 2.4.1.-) [Arabidopsis Thaliana] (GB:Q84VX0;GB:Q9LFZ7); similar to ATSIP2 (ARABIDOPSIS THALIANA SEED IMBI"
MSGI1_22629	NODE_5075_length_461_cov_153.112793	30	63.9	49	55.8	1.1	0	0	0	signalling.phosphorelay	"AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3); histidine phosphotransfer kinase Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs).  AHPs function as redundant positive regulators of cytokinin signaling.  Membe"
MSGI1_22629	NODE_5075_length_461_cov_153.112793	30	63.9	49	55.8	1.1	0	0	0	hormone metabolism.cytokinin.signal transduction	"AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3); histidine phosphotransfer kinase Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs).  AHPs function as redundant positive regulators of cytokinin signaling.  Membe"
MSGI1_88053	NODE_50784_length_149_cov_23.194632	10.3	11.5	0.2	0	0	0	5.7	4.5	tetrapyrrole synthesis.chlorophyll b synthase	CH1 (CHLORINA 1); chlorophyll a oxygenase Encodes chlorophyllide <i>a</i> oxygenase which converts chlorophyllide <i>a</i> to chlorophyllide <i>b</i> by catalyzing two successive hydroxylations at the 7-methyl group of chlorophyllide <i>a</i> .  Mutants
MSGI1_56623	NODE_50784_length_220_cov_14.022727	20.9	11.4	3.6	17.1	0	0	2.5	0	protein.synthesis.misc ribososomal protein	"RPL27A (RIBOSOMAL PROTEIN L27A); structural constituent of ribosome Encodes a ribosomal protein L27A, a constituent of the large subunit of the ribosomal complex.  Regulated by TCP20. Identical to 60S ribosomal protein L27a-2 (RPL27AB) [Arabidopsis Thali"
MSGI1_67514	NODE_5080_length_188_cov_9.085107	6.3	31.5	2.5	20.1	2.3	3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_86718	NODE_50807_length_151_cov_17.947020	9.8	12.1	0	0	0	0	0	4.6	tetrapyrrole synthesis.chlorophyll b synthase	CH1 (CHLORINA 1); chlorophyll a oxygenase Encodes chlorophyllide <i>a</i> oxygenase which converts chlorophyllide <i>a</i> to chlorophyllide <i>b</i> by catalyzing two successive hydroxylations at the 7-methyl group of chlorophyllide <i>a</i> .  Mutants
MSGI1_115370	NODE_5081_length_84_cov_105.773811	47	21.2	25.9	53.4	0	1	0	-1.3	hormone metabolism.ethylene.synthesis-degradation	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT5G59530.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain ATPase, F1/V1/A1 com"
MSGI1_32651	NODE_50835_length_345_cov_8.797101	4.4	24.8	5.7	16.4	2.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_113293	NODE_50841_length_103_cov_54.932037	44.5	41.1	25.6	55	0	1.1	0	0	protein.degradation.ubiquitin.proteasom	PBC1 (20S proteasome beta subunit C1); peptidase 20S proteasome beta subunit PBC1 truncated protein (PBC1) Identical to Proteasome subunit beta type 3-A (EC 3.4.25.1) (20S proteasome beta subunit C-1) (Proteasome component T) (PBC1) [Arabidopsis Thaliana
MSGI1_21837	NODE_50861_length_472_cov_7.286017	8.8	3.3	348.8	6.7	0	-5.7	-5.3	0	amino acid metabolism.synthesis.glutamate family.proline.delta 1-pyrroline-5-carboxylate synthetase	"P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2); catalytic/ glutamate 5-kinase/ glutamate-5-semialdehyde dehydrogenase encodes delta 1-pyrroline-5-carboxylate synthetase B. Gene expression is induced by dehydration, high salt and ABA. Identical to Del"
MSGI1_64040	NODE_50922_length_197_cov_21.187817	23.7	0.1	5.5	0	-7.9	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_114028	NODE_50929_length_97_cov_26.175259	22.4	53.3	6.5	18.5	1.3	0	0	1.5	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase	NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) chloroplast-targeted member of a family of  enzymes similar to nine-cis-epoxycarotenoid dioxygenase similar to NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5) [Arabidopsis thaliana] (TAIR:AT1G30100.1); similar
MSGI1_120412	NODE_5093_length_61_cov_27.000000	15.1	29.1	0	0	0	0	4.9	5.9	redox.dismutases and catalases	"FSD2 (FE SUPEROXIDE DISMUTASE 2); iron superoxide dismutase Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B. similar to FSD1 (FE SUPEROXIDE DISMUTASE 1), iron superoxide dismutase [Arabidopsis thaliana] (TAIR:AT4G2"
MSGI1_120410	NODE_50952_length_61_cov_7.557377	0	3.2	14.8	0	0	-4.9	-4.9	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP2 (ARABIDOPSIS THALIANA SEED IMBIBITION 2); hydrolase, hydrolyzing O-glycosyl compounds  similar to ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G55740.1); similar to DI"
MSGI1_50396	NODE_5096_length_244_cov_112.938522	31.5	34.6	45.4	70.2	0	0	0	-1	RNA.processing.RNA helicase	PRH75 (plant RNA helicase 75); ATP-dependent helicase DEAD/DEAH box RNA helicase PRH75 Identical to DEAD-box ATP-dependent RNA helicase 7 (EC 3.6.1.-) (RH7) [Arabidopsis Thaliana] (GB:Q39189;GB:Q94BX7;GB:Q9LVB7); similar to EMB1138 (EMBRYO DEFECTIVE 1138
MSGI1_11128	NODE_50967_length_719_cov_15.929069	11.7	10.2	0.1	0.2	0	0	6.9	5.7	not assigned.unknown	not assigned.unknown
MSGI1_31265	NODE_5097_length_357_cov_189.411758	194.4	155.9	2.2	1.1	0	0	6.5	7.1	not assigned.unknown	not assigned.unknown
MSGI1_36690	NODE_50975_length_315_cov_10.460318	3.1	5.3	21.2	7.6	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_70971	NODE_50998_length_180_cov_22.811111	4.8	25.2	14.9	10.6	2.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_113803	NODE_51016_length_99_cov_15.797979	14.4	28	0	0	0	0	4.8	5.8	not assigned.unknown	not assigned.unknown
MSGI1_116689	NODE_51060_length_73_cov_22.876713	13.8	9.5	0	0	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_72789	NODE_51085_length_176_cov_13.704545	11.5	9.5	0	0	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_16330	NODE_51087_length_571_cov_13.712785	10.2	33.9	51	16.9	1.7	-1.6	-2.3	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_16330	NODE_51087_length_571_cov_13.712785	10.2	33.9	51	16.9	1.7	-1.6	-2.3	0	stress.abiotic.unspecified	universal stress protein (USP) family protein  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49050.1); similar to fiber protein Fb19 [Gossypium barbadense] (GB:AAR07598.1); contains InterPro domain Universal stress protein (Usp); (InterPro:I
MSGI1_120399	NODE_511_length_61_cov_221.016388	36.2	77.7	39.9	67.9	1.1	0	0	0	S-assimilation.APS	"APS1 (ATP sulfurylase 3) encodes ATP sulfurylase, the first enzyme in the sulfate assimilation pathway of Arabidopsis. similar to APS3 (ATP sulfurylase 2), sulfate adenylyltransferase (ATP) [Arabidopsis thaliana] (TAIR:AT4G14680.1); similar to APS4 [Arab"
MSGI1_113291	NODE_51100_length_103_cov_51.747574	45	79.6	6.2	26.1	0	2.1	2.9	1.6	not assigned.unknown	not assigned.unknown
MSGI1_49423	NODE_51136_length_248_cov_11.189516	13.6	11.9	0.9	1	0	0	3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_111441	NODE_51145_length_118_cov_23.135593	19.9	12.9	0	0	0	0	5.3	4.7	not assigned.unknown	not assigned.unknown
MSGI1_69174	NODE_51157_length_184_cov_6.956522	7.8	15.7	0.6	0	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_120395	NODE_51161_length_61_cov_12.639344	4.8	22.7	0	0	2.2	0	0	5.5	RNA.regulation of transcription.C3H zinc finger family	zinc finger (CCCH-type) family protein  similar to CZF1/ZFAR1 [Arabidopsis thaliana] (TAIR:AT2G40140.2); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro
MSGI1_90093	NODE_51171_length_146_cov_15.431507	8.7	35.1	20	23.3	2	0	0	0	RNA.regulation of transcription.GRAS transcription factor family	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_90093	NODE_51171_length_146_cov_15.431507	8.7	35.1	20	23.3	2	0	0	0	development.unspecified	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_77133	NODE_51173_length_167_cov_14.562874	20.3	1.8	9.4	1.1	-3.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_45984	NODE_51194_length_264_cov_7.409091	22.4	27.5	6.1	1.4	0	0	0	4.3	cell wall	"disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT1G47890.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE79507.1); contains Inter"
MSGI1_45984	NODE_51194_length_264_cov_7.409091	22.4	27.5	6.1	1.4	0	0	0	4.3	stress.biotic	"disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT1G47890.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE79507.1); contains Inter"
MSGI1_29891	NODE_51205_length_370_cov_13.178378	2.2	18.2	3.8	5.8	3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_105552	NODE_51225_length_127_cov_10.960629	11.1	4.7	0	0	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_120391	NODE_5125_length_61_cov_23.180328	8.4	12.8	0	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_120389	NODE_51257_length_61_cov_22.901640	11.9	12.6	0	0	0	0	4.6	4.7	not assigned.unknown	not assigned.unknown
MSGI1_120388	NODE_51267_length_61_cov_28.491804	24.8	10.6	2	1.6	0	0	3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_9726	NODE_513_length_773_cov_93.611900	11.8	51.9	12.9	7.2	2.1	0	0	2.8	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	"lipase class 3 family protein  similar to DAD1 (DEFECTIVE ANTHER DEHISCENCE 1), triacylglycerol lipase [Arabidopsis thaliana] (TAIR:AT2G44810.1); similar to lipase-like protein [Oryza sativa] (GB:CAC39051.1); similar to Os02g0653900 [Oryza sativa (japoni"
MSGI1_63653	NODE_51302_length_198_cov_33.060608	31.5	14.3	5.4	9.3	0	0	2.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L37a (RPL37aB)  Identical to Putative 60S ribosomal protein L37a-1 (RPL37AB) [Arabidopsis Thaliana] (GB:Q9SRK6); similar to 60S ribosomal protein L37a (RPL37aC) [Arabidopsis thaliana] (TAIR:AT3G60245.1); similar to 60S ribosomal prot
MSGI1_111070	NODE_51306_length_121_cov_57.520660	18.7	48.6	33.1	63	1.4	0	0	0	transporter.sugars.sucrose	"SUC2 (SUCROSE-PROTON SYMPORTER 2); carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter Encodes for a high-affinity  transporter essential for phloem loading and long-distance transport. A major sucrose transporter, AtSUC2 can also transpor"
MSGI1_34629	NODE_51317_length_330_cov_54.893940	53.5	37.9	20.7	44	0	0	1.4	0	stress.abiotic.heat	BIP (LUMINAL BINDING PROTEIN); ATP binding luminal binding protein (BiP) Identical to Luminal-binding protein 2 precursor (BiP2) (AtBP2) [Arabidopsis Thaliana] (GB:Q39043;GB:Q39042); Identical to Luminal-binding protein 1 precursor (BiP1) (AtBP1) [Arabido
MSGI1_120386	NODE_51321_length_61_cov_42.655739	26.5	17.4	0.8	0	0	0	5	5.1	cell wall.degradation.pectate lyases and polygalacturonases	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT4G23500.1); similar to Glycoside hydrolas
MSGI1_113134	NODE_51326_length_104_cov_53.663460	22.9	15.2	3.5	4	0	0	2.7	0	cell wall	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_113134	NODE_51326_length_104_cov_53.663460	22.9	15.2	3.5	4	0	0	2.7	0	secondary metabolism.simple phenols	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_37588	NODE_51350_length_309_cov_16.935276	9.7	20.8	0	0	0	0	0	5.4	not assigned.unknown	not assigned.unknown
MSGI1_112507	NODE_51352_length_109_cov_43.311928	37.2	21.7	5.5	14.5	0	0	2.8	0	protein.synthesis.initiation	"eukaryotic translation initiation factor, putative (EIF4B5)  similar to EIF4B1 (eukaryotic translation initiation factor 4B1) [Arabidopsis thaliana] (TAIR:AT3G26400.1); similar to eukaryotic translation initiation factor 4B [Triticum aestivum] (GB:AAC282"
MSGI1_52341	NODE_51359_length_236_cov_10.457627	7.3	12.8	1.5	1	0	0	0	3.7	not assigned.unknown	not assigned.unknown
MSGI1_15407	NODE_5136_length_593_cov_213.946030	250.3	40.4	63.4	27.4	-2.6	-1.2	2	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL3 (beta-galactosidase 3), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G36360.2)"
MSGI1_15407	NODE_5136_length_593_cov_213.946030	250.3	40.4	63.4	27.4	-2.6	-1.2	2	0	"misc.gluco-, galacto- and mannosidases"	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL3 (beta-galactosidase 3), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G36360.2)"
MSGI1_67925	NODE_51366_length_187_cov_5.133690	3.3	5.6	22.7	11.3	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_49654	NODE_51378_length_247_cov_16.744940	22.5	0.8	2.5	0	-4.8	0	3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_5980	NODE_5138_length_973_cov_33.284687	45.2	21.4	0	0	0	0	6.5	5.4	not assigned.unknown	not assigned.unknown
MSGI1_120381	NODE_51406_length_61_cov_34.721310	20.9	76.8	0	0	1.9	0	5.4	7.3	not assigned.unknown	not assigned.unknown
MSGI1_115948	NODE_51421_length_79_cov_46.417721	36	22	0	0	0	0	6.2	5.5	lipid metabolism.FA synthesis and FA elongation.pyruvate DH	"PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA); pyruvate dehydrogenase (acetyl-transferring) pyruvate dehydrogenase E1 alpha subunit similar to AT-E1 ALPHA (pyruvate dehydrogenase complex E1 alpha subunit), pyruvate dehydrogenase (acetyl-transferring) [A"
MSGI1_66237	NODE_5143_length_191_cov_151.623032	45.6	152.9	39.1	74.9	1.7	0	0	1	not assigned.unknown	not assigned.unknown
MSGI1_33162	NODE_51437_length_341_cov_54.190617	50.9	14.3	6.4	14.7	-1.8	0	3	0	not assigned.unknown	not assigned.unknown
MSGI1_120379	NODE_51443_length_61_cov_46.295082	26.3	17.8	0	0.4	0	0	5.7	5.5	not assigned.unknown	not assigned.unknown
MSGI1_117050	NODE_51444_length_70_cov_43.228573	24.3	38.7	17.1	3.8	0	0	0	3.3	not assigned.unknown	not assigned.unknown
MSGI1_29403	NODE_5146_length_375_cov_56.264000	34.3	14.1	44.5	9.6	0	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_114027	NODE_51466_length_97_cov_34.835052	33.9	27.3	11.7	11.5	0	0	1.5	0	protein.degradation.ubiquitin.proteasom	PBB2 (20S proteasome beta subunit B 2); peptidase Encodes 20S proteasome beta subunit PBB2 (PBB2). Identical to Proteasome subunit beta type 7-B precursor (EC 3.4.25.1) (Proteasome subunit beta type 2) (20S proteasome beta subunit B-2) (Proteasome compon
MSGI1_31588	NODE_5147_length_354_cov_53.567795	46.5	33.8	11.2	27.9	0	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_47899	NODE_5155_length_255_cov_35.035294	53.8	36.2	18.9	16.8	0	0	1.5	0	cell. vesicle transport	clathrin adaptor complexes medium subunit-related  similar to delta-COP [Zea mays] (GB:AAF67098.1); similar to Os05g0310800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055159.1); similar to Os05g0311000 [Oryza sativa (japonica cultivar-group)] (GB
MSGI1_51329	NODE_51552_length_240_cov_10.625000	16.4	65.9	8.7	13.3	2	0	0	2.3	cell wall.degradation.pectate lyases and polygalacturonases	pectate lyase family protein  similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G24780.1); similar to pectate lyase [Gossypium hirsutum] (GB:AAY85180.1); similar to pectate lyase [Vitis vinifera] (GB:AAF63756.1); similar to Pectate
MSGI1_46645	NODE_51579_length_261_cov_11.084291	16.6	0.7	3.6	0	-4.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_31470	NODE_51595_length_355_cov_15.354930	12.5	52.4	7.1	26.5	2.1	1.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_34380	NODE_51609_length_332_cov_34.566265	11	28.2	13.7	7	0	0	0	2	RNA.regulation of transcription.GRAS transcription factor family	scarecrow-like transcription factor 14 (SCL14)  similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G29060.1); similar to SCARECROW-like protein [Lilium lon (GB:BAC77269.2); contains InterPro domain GRAS transcription
MSGI1_63651	NODE_51641_length_198_cov_5.535354	3.4	6.8	22.5	3.1	0	-2.9	-2.7	0	RNA.regulation of transcription.bZIP transcription factor family	GBF3 (G-BOX BINDING FACTOR 3); transcription factor encodes a bZIP G-box binding protein whose expression is induced by ABA. It has been shown to bind to Adh that contains the G-box and is induced by cold and water deprivation. GBF3 has been shown to be
MSGI1_34378	NODE_51645_length_332_cov_31.924698	21	36.4	59.4	42.8	0	0	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_120362	NODE_51710_length_61_cov_18.163935	8.8	11.7	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_72333	NODE_51712_length_177_cov_31.819208	21.7	2.3	0.2	1.9	-3.2	0	6.8	0	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit JP650 precursor (Aromatic-rich glycoprotein JP650) (JP650) [Arabidopsis Thaliana] (GB:P92990;GB:O64599;GB:Q8H7B8;GB:Q93ZQ4); simil"
MSGI1_113035	NODE_51719_length_105_cov_18.552382	16.3	27.8	26.4	8.2	0	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_91553	NODE_51723_length_144_cov_9.784722	12.9	3	27.7	1.7	0	-4	0	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	transcription factor/ transcription regulator  contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598)
MSGI1_84768	NODE_5174_length_154_cov_8.935065	7	2.6	12.2	19.6	0	0	0	-2.9	cell wall	"BGL2 (PATHOGENESIS-RELATED PROTEIN 2); glucan 1,3-beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds beta 1,3-glucanase Identical to Glucan endo-1,3-beta-glucosidase, acidic isoform precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) (("
MSGI1_84768	NODE_5174_length_154_cov_8.935065	7	2.6	12.2	19.6	0	0	0	-2.9	"misc.beta 1,3 glucan hydrolases"	"BGL2 (PATHOGENESIS-RELATED PROTEIN 2); glucan 1,3-beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds beta 1,3-glucanase Identical to Glucan endo-1,3-beta-glucosidase, acidic isoform precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) (("
MSGI1_74634	NODE_51763_length_172_cov_7.203488	2.6	13	1.7	0.2	0	0	0	6	not assigned.unknown	not assigned.unknown
MSGI1_99310	NODE_51766_length_134_cov_18.320896	22.5	23.9	3.2	0.8	0	0	2.8	4.9	not assigned.unknown	not assigned.unknown
MSGI1_43443	NODE_5177_length_276_cov_12.438406	2.8	17.8	7.1	16.2	2.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_39970	NODE_5178_length_295_cov_8.528813	5.1	1.8	23.2	4.1	0	-2.5	-2.2	0	transport.ABC transporters and multidrug resistance systems	ATMRP14 (Arabidopsis thaliana multidrug resistance-associated protein 14) member of MRP subfamily similar to ATMRP5 (Arabidopsis thaliana multidrug resistance-associated protein 5) [Arabidopsis thaliana] (TAIR:AT1G04120.1); similar to ATMRP8 (Arabidopsis
MSGI1_53916	NODE_51806_length_230_cov_6.339130	5.9	0.8	30.2	0.3	0	-6.7	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_77131	NODE_51807_length_167_cov_9.838324	14.5	11.8	0.4	0	0	0	5.2	4.6	not assigned.unknown	not assigned.unknown
MSGI1_55523	NODE_5184_length_224_cov_74.803574	78.9	59	10.4	12.8	0	0	2.9	2.2	not assigned.unknown	not assigned.unknown
MSGI1_82258	NODE_51846_length_158_cov_9.265822	4.9	33.5	13.3	2.3	2.8	0	0	3.9	RNA.regulation of transcription.C2H2 zinc finger family	"zinc finger (C2H2 type) family protein  similar to RHL41 (RESPONSIVE TO HIGH LIGHT 41), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G59820.1); similar to C2H2-type zinc finger protein [Brassica napus] (GB"
MSGI1_10405	NODE_5185_length_746_cov_50.769436	68.2	77.7	110.4	52.6	0	-1.1	0	0	signalling.calcium	CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32); calcium- and calmodulin-dependent protein kinase/ kinase Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation ac
MSGI1_65870	NODE_51863_length_192_cov_6.005208	10.2	22.6	37.2	22.6	0	0	-1.9	0	cell wall.cellulose synthesis.cellulose synthase	"CESA3 (CELLULASE SYNTHASE 3); cellulose synthase/ transferase, transferring glycosyl groups cellulose synthase. Involved in defense signaling. Identical to Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC 2.4.1.12) (AtCesA-3) (Constitutive expr"
MSGI1_68729	NODE_51867_length_185_cov_10.881081	15.4	80.8	28	39.9	2.4	0	0	1	not assigned.unknown	not assigned.unknown
MSGI1_81643	NODE_51931_length_159_cov_10.710691	5.2	46.7	16.8	55	3.2	1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_99309	NODE_51937_length_134_cov_11.216418	17	29	49.1	53.7	0	0	-1.5	0	"RNA.regulation of transcription.CCAAT box binding factor family, HAP3"	CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family  Identical to Nuclear transcription factor Y subunit B-3 (AtNF-YB-3) (Transcriptional activator HAP3C) (NFYB3) [Arabidopsis Thaliana] (GB:O23310); similar to CCAAT-box bindin
MSGI1_38386	NODE_51942_length_304_cov_8.855263	3.4	10.5	0.1	0.4	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_30800	NODE_51962_length_361_cov_99.864265	59.1	36.6	95.8	12.2	0	-3	0	1.6	cell wall.degradation.mannan-xylose-arabinose-fucose	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT3G52840.1)"
MSGI1_30800	NODE_51962_length_361_cov_99.864265	59.1	36.6	95.8	12.2	0	-3	0	1.6	"misc.gluco-, galacto- and mannosidases"	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT3G52840.1)"
MSGI1_96881	NODE_51974_length_137_cov_4.795620	2.5	25.8	113.6	17	3.4	-2.7	-5.5	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP2 (ARABIDOPSIS THALIANA SEED IMBIBITION 2); hydrolase, hydrolyzing O-glycosyl compounds  similar to ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G55740.1); similar to DI"
MSGI1_99306	NODE_51992_length_134_cov_44.052238	24.5	10.8	2.7	1.8	0	0	3.2	0	DNA.repair	DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); protein binding Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. Identical to DNA-damage-repair/toleration protein DRT100 precursor (DRT100) [Arabidopsis Thaliana] (GB:Q00874;G
MSGI1_72787	NODE_51995_length_176_cov_5.886364	2.2	6.8	18.7	4.7	0	0	-3.1	0	"misc.oxidases - copper, flavone etc."	"monooxygenase, putative (MO2)  similar to monooxygenase, putative (MO3) [Arabidopsis thaliana] (TAIR:AT5G05320.1); similar to monooxygenase [Solanum tuberosum] (GB:BAC23045.1); similar to Os03g0154100 [Oryza sativa (japonica cultivar-group)] (GB:NP_00104"
MSGI1_23670	NODE_520_length_446_cov_16.170404	22.4	0.7	0.1	0	-5	0	7.8	0	stress.biotic	"transferase family protein  similar to CHAT (ACETYL COA:(Z)-3-HEXEN-1-OL ACETYLTRANSFERASE), acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase [Arabidopsis thaliana] (TAIR:AT3G03480.1); similar to benzoyl coenzyme A: benzyl alcohol benzoyl transferase [Petun"
MSGI1_26252	NODE_5201_length_411_cov_129.569336	87	31	101.2	74.5	-1.5	0	0	-1.3	tetrapyrrole synthesis.magnesium chelatase	"CHLI2; magnesium chelatase encodes a second Chl I gene (CHLI2), a subunit of magnesium chelatase which is required for chlorophyll biosynthesis.  Protein not detectable in wild type and is targeted for rapid degradation in vivo. similar to CHLI1 (CHLORIN"
MSGI1_72331	NODE_52041_length_177_cov_15.943502	12.5	19.6	0	0	0	0	4.6	5.3	not assigned.unknown	not assigned.unknown
MSGI1_99305	NODE_52047_length_134_cov_18.962687	8.8	60.3	58	17.5	2.8	-1.7	-2.7	1.8	protein.targeting.secretory pathway.vacuole	GAMMA-VPE (Vacuolar processing enzyme gamma); cysteine-type endopeptidase Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types
MSGI1_41950	NODE_5205_length_284_cov_204.133804	122.8	106.1	57.8	55.6	0	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_104617	NODE_52079_length_128_cov_16.539062	12	20.6	9.5	3.2	0	0	0	2.7	not assigned.unknown	not assigned.unknown
MSGI1_29889	NODE_5208_length_370_cov_11.562162	6.8	6.8	27.5	6.1	0	-2.2	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_18443	NODE_52119_length_531_cov_9.058380	13.4	27.3	6.5	6.7	0	0	0	2	RNA.regulation of transcription.C2H2 zinc finger family	"ATIDD2 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 2); nucleic acid binding / transcription factor/ zinc ion binding zinc finger protein, similar to maize Indeterminate1 (ID1) similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (T"
MSGI1_120343	NODE_52145_length_61_cov_13.655738	16.6	5.2	2	7.8	0	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_61919	NODE_52189_length_203_cov_7.635468	5.8	17.1	3.5	2.7	0	0	0	2.7	not assigned.unknown	not assigned.unknown
MSGI1_88741	NODE_52201_length_148_cov_14.648648	7.6	17	34.6	26.6	0	0	-2.2	0	hormone metabolism.ethylene.induced-regulated-responsive-activated	"universal stress protein (USP) family protein  similar to ethylene-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G09740.1); similar to universal stress protein family [Medicago truncatula] (GB:ABE78101.1); contains InterPro domain Universa"
MSGI1_86699	NODE_52210_length_151_cov_5.470199	5.5	14.1	36.9	36.9	0	0	-2.7	0	transport.ABC transporters and multidrug resistance systems	ABC transporter family protein  Identical to White-brown complex homolog protein 21 (WBC21) [Arabidopsis Thaliana] (GB:Q7XA72;GB:Q9LI82); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G31770.1); similar to ABC transporter-like
MSGI1_114857	NODE_52228_length_89_cov_29.775280	8.8	12.6	0	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_65503	NODE_52233_length_193_cov_5.730570	3	5.8	19.5	5.3	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_41949	NODE_52239_length_284_cov_20.021128	25.3	1.3	0.6	0.3	-4.3	0	5.4	0	PS.lightreaction.photosystem II.LHC-II	"LHB1B1 (Photosystem II light harvesting complex gene 1.4); chlorophyll binding Photosystem II type I chlorophyll            a/b-binding protein similar to CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G2993"
MSGI1_38574	NODE_5225_length_303_cov_37.607262	13.5	17.9	0.1	0	0	0	7.1	5.2	not assigned.unknown	not assigned.unknown
MSGI1_52883	NODE_52263_length_234_cov_9.111111	1.3	14.4	1.3	9	3.5	0	0	0	cell wall.degradation.pectate lyases and polygalacturonases	lyase  similar to lyase [Arabidopsis thaliana] (TAIR:AT4G38030.1); similar to lyase [Arabidopsis thaliana] (TAIR:AT4G37950.1); similar to lyase [Arabidopsis thaliana] (TAIR:AT1G09910.1); similar to Os08g0554100 [Oryza sativa (japonica cultivar-group)] (G
MSGI1_86697	NODE_52264_length_151_cov_6.867550	7.3	6.5	16.3	27	0	0	0	-2.1	stress.biotic	"ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19); ATPase, coupled to transmembrane movement of substances / auxin efflux transporter Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates"
MSGI1_86697	NODE_52264_length_151_cov_6.867550	7.3	6.5	16.3	27	0	0	0	-2.1	transport.ABC transporters and multidrug resistance systems	"ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19); ATPase, coupled to transmembrane movement of substances / auxin efflux transporter Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates"
MSGI1_52882	NODE_52265_length_234_cov_10.055555	23.7	11.8	4.3	6.6	0	0	2.5	0	RNA.regulation of transcription.putative transcription regulator	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation. Identical to Proliferating cellular nuclear antigen 1 (PCNA 1) (PCNA)
MSGI1_120335	NODE_52296_length_61_cov_27.295082	17.9	14.2	28.7	40.4	0	0	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_109511	NODE_52324_length_123_cov_6.219512	2.8	6.7	12.7	0	0	-4.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_54454	NODE_52329_length_228_cov_18.008772	29.1	3	8.7	1.7	-3.3	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_34205	NODE_52339_length_333_cov_11.135135	7.7	18	27.8	15.1	0	0	-1.9	0	cell wall.cellulose synthesis.cellulose synthase	"CESA3 (CELLULASE SYNTHASE 3); cellulose synthase/ transferase, transferring glycosyl groups cellulose synthase. Involved in defense signaling. Identical to Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC 2.4.1.12) (AtCesA-3) (Constitutive expr"
MSGI1_44483	NODE_5234_length_271_cov_13.675277	15.6	9.9	0	0	0	0	5	0	cell wall.degradation.pectate lyases and polygalacturonases	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT4G23500.1); similar to Glycoside hydrolas
MSGI1_36987	NODE_52384_length_313_cov_9.089457	11	0.1	2.6	0	-6.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_95319	NODE_52393_length_139_cov_5.122302	2.7	4.1	28.2	6	0	-2.2	-3.4	0	transport.amino acids	amino acid transporter family protein  similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT2G39130.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABE77592.1); contains InterPro domain Amino acid/p
MSGI1_24289	NODE_52411_length_436_cov_12.256881	19.4	1.8	14.5	1.4	-3.4	-3.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_90824	NODE_52416_length_145_cov_15.406897	7.2	17	37	11.7	0	-1.7	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_116686	NODE_52429_length_73_cov_22.876713	16.5	15.7	0	0	0	0	5	5	not assigned.unknown	not assigned.unknown
MSGI1_45325	NODE_52434_length_267_cov_34.947567	30.5	8.3	18.2	7.8	-1.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_69171	NODE_52437_length_184_cov_13.913043	17.1	1.6	1.6	0.6	-3.4	0	3.4	0	secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase	"CHS (CHALCONE SYNTHASE); naringenin-chalcone synthase Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids.  Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of"
MSGI1_33159	NODE_52456_length_341_cov_37.228741	26.3	6.8	8	6.1	-2	0	0	0	cell wall.modification	"ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1) member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-B1 precursor (AtEXPB1) (At-EXPB1) (Beta-expansin-1) (Ath- ExpBeta-1.5) (EXPB1)"
MSGI1_80512	NODE_52463_length_161_cov_14.720497	16.8	10.6	29.4	7.7	0	-1.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_107478	NODE_52477_length_125_cov_3.736000	1.7	2.1	16.2	5.4	0	0	-3.3	0	protein.degradation.ubiquitin.E3.SCF.FBOX	"FKF1 (FLAVIN-BINDING KELCH DOMAIN F BOX PROTEIN); ubiquitin-protein ligase flavin-binding kelch domain F box protein, is clock-controlled, regulates transition to flowering Identical to Adagio protein 3 (Flavin-binding kelch repeat F-box protein 1) (F-bo"
MSGI1_73237	NODE_52489_length_175_cov_8.108571	7.7	40.9	36.5	5.3	2.4	-2.8	-2.2	2.9	RNA.regulation of transcription.PHOR1	U-box domain-containing protein  similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G37490.1); similar to syringolide-induced protein 13-1-1 [Glycine max] (GB:BAB86896.1); contains InterPro domain Armadillo-like helical; (InterPro:
MSGI1_106505	NODE_5250_length_126_cov_12.015873	11.3	32.9	29.6	22.8	1.5	0	0	0	"misc.gluco-, galacto- and mannosidases"	glycosyl hydrolase family 5 protein / cellulase family protein  similar to glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] (TAIR:AT4G28320.1); similar to putative (1-4)-beta-mannan endohydrolase [Oryza sativa (japoni
MSGI1_106505	NODE_5250_length_126_cov_12.015873	11.3	32.9	29.6	22.8	1.5	0	0	0	"cell wall.degradation.cellulases and beta -1,4-glucanases"	glycosyl hydrolase family 5 protein / cellulase family protein  similar to glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] (TAIR:AT4G28320.1); similar to putative (1-4)-beta-mannan endohydrolase [Oryza sativa (japoni
MSGI1_89422	NODE_52517_length_147_cov_4.061224	6.8	5.5	40.9	8.4	0	-2.3	-2.6	0	transport.ABC transporters and multidrug resistance systems	ABC transporter family protein  Identical to Probable white-brown complex homolog protein 28 (WBC28) [Arabidopsis Thaliana] (GB:Q9FT51); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT5G06530.1); similar to Putative ABC transport
MSGI1_120322	NODE_52530_length_61_cov_6.475410	4.5	2.7	53.1	20.2	0	-1.4	-3.6	-2.9	not assigned.unknown	not assigned.unknown
MSGI1_58351	NODE_52562_length_214_cov_16.261683	18.6	36.5	0	0	0	0	5.2	6.2	not assigned.unknown	not assigned.unknown
MSGI1_21083	NODE_52564_length_483_cov_9.438924	11.3	0.3	5.2	0.2	-5.2	0	0	0	secondary metabolism.wax	"CER1 protein, putative  similar to CER1 protein, putative [Arabidopsis thaliana] (TAIR:AT2G37700.1); similar to CER1 (ECERIFERUM 1) [Arabidopsis thaliana] (TAIR:AT1G02205.2); similar to Sterol desaturase [Medicago truncatula] (GB:ABD28316.1); similar to"
MSGI1_69609	NODE_52569_length_183_cov_22.174864	14.3	12.9	0	0	0	0	4.8	4.7	not assigned.unknown	not assigned.unknown
MSGI1_113486	NODE_52574_length_102_cov_24.715687	14.8	0.7	10.2	0	-4.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_47022	NODE_5259_length_259_cov_81.942085	44.6	35.9	7.7	16.1	0	0	2.5	0	cell wall.degradation.pectate lyases and polygalacturonases	"PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding polygalacturonase inhibiting protein 1 (PGIP1) mRNA, Identical to Polygalacturonase inhibitor 1 precursor (Polygalacturonase-inhibiting protein) (PGIP-1) (PGIP1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_33524	NODE_52619_length_338_cov_10.411242	13.1	1.7	26.6	0.6	0	-5.5	0	0	cell wall	"IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE); UDP-glycosyltransferase/ transferase, transferring glycosyl groups UDP-glucose:indole-3-acetate beta-D-glucosyltransferase similar to UGT1 (UDP-glucosyl transferase 75B1), UDP-glycosyltransferase/ tran"
MSGI1_51326	NODE_52645_length_240_cov_13.087500	17.1	2	3.1	1.2	-3.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_45980	NODE_52659_length_264_cov_9.625000	10.5	52.1	15.5	36	2.3	0	0	0	transport.ABC transporters and multidrug resistance systems	"ABC transporter family protein  Identical to Multidrug resistance protein 13 (P-glycoprotein 15) (MDR13) [Arabidopsis Thaliana] (GB:Q9LHD1); similar to PGP18 (P-GLYCOPROTEIN 18), ATPase, coupled to transmembrane movement of substances [Arabidopsis thalia"
MSGI1_23829	NODE_5267_length_443_cov_219.347626	140.4	109.5	667.5	117	0	-2.5	-2.2	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_23829	NODE_5267_length_443_cov_219.347626	140.4	109.5	667.5	117	0	-2.5	-2.2	0	misc.plastocyanin-like	plastocyanin-like domain-containing protein  Identical to Early nodulin-like protein 2 precursor (Phytocyanin-like protein) [Arabidopsis Thaliana] (GB:Q9T076;GB:Q5PNT5;GB:Q8LBE5); similar to plastocyanin-like domain-containing protein [Arabidopsis thalian
MSGI1_104609	NODE_52674_length_128_cov_75.218750	65.8	62.1	53.4	19.1	0	-1.5	0	1.7	not assigned.unknown	not assigned.unknown
MSGI1_76655	NODE_52676_length_168_cov_8.827381	6.1	9.7	25.1	4.6	0	-2.4	-2	0	protein.postranslational modification	"CIPK10 (CBL-INTERACTING PROTEIN KINASE 10); kinase Encodes a CBL-interacting protein kinase with similarity to SOS protein kinase. similar to CIPK2 (CBL-INTERACTING PROTEIN KINASE 2), kinase [Arabidopsis thaliana] (TAIR:AT5G07070.1); similar to CBL-inter"
MSGI1_105542	NODE_52701_length_127_cov_47.401573	33.3	19.6	0.3	0	0	0	6.8	5.3	not assigned.unknown	not assigned.unknown
MSGI1_120312	NODE_52714_length_61_cov_24.967213	15.7	8.8	0	0.4	0	0	5	0	not assigned.unknown	not assigned.unknown
MSGI1_41948	NODE_52715_length_284_cov_38.003521	44.2	21.7	1.7	0.3	0	0	4.7	6.2	not assigned.unknown	not assigned.unknown
MSGI1_120311	NODE_52723_length_61_cov_4.950819	5.8	28.6	12	1.6	2.3	0	0	4.2	not assigned.unknown	not assigned.unknown
MSGI1_79313	NODE_52724_length_163_cov_7.693252	7.6	28.8	1.5	2.5	1.9	0	0	3.5	not assigned.unknown	not assigned.unknown
MSGI1_56871	NODE_52725_length_219_cov_10.780822	16.9	10.8	2.4	3.8	0	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_41355	NODE_52734_length_287_cov_9.209059	3.3	3	56.2	4.5	0	-3.6	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_84764	NODE_52740_length_154_cov_33.636364	19.8	8.9	2.3	2.1	0	0	3.1	0	cell wall	"glycosyl hydrolase family 17 protein  Identical to Putative glucan endo-1,3-beta-glucosidase 7 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 7) ((1->3)-beta-glucanase 7) (Beta- 1,3-endoglucanase 7) (Beta-1,3-glucanase 7) [Arabidopsis Thaliana"
MSGI1_93007	NODE_52777_length_142_cov_4.028169	3.9	11.8	0.2	0.7	0	0	0	4.1	not assigned.unknown	not assigned.unknown
MSGI1_45576	NODE_52778_length_266_cov_13.947369	17.7	20.1	9.6	29.8	0	1.6	0	0	fermentation.PDC	"pyruvate decarboxylase, putative  similar to PDC3 (PYRUVATE DECARBOXYLASE-3), pyruvate decarboxylase [Arabidopsis thaliana] (TAIR:AT5G01330.1); similar to PDC2 (PYRUVATE DECARBOXYLASE-2), pyruvate decarboxylase [Arabidopsis thaliana] (TAIR:AT5G54960.1);"
MSGI1_99298	NODE_52789_length_134_cov_12.686567	23.1	12.8	2.5	8	0	0	3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_117049	NODE_52790_length_70_cov_14.328571	8.9	18.8	0	0	0	0	0	5.2	not assigned.unknown	not assigned.unknown
MSGI1_117829	NODE_52800_length_64_cov_62.656250	22.9	30	5.1	9.2	0	0	2.2	1.7	not assigned.unknown	not assigned.unknown
MSGI1_64426	NODE_52811_length_196_cov_7.413265	11.8	37	6.6	11.9	1.6	0	0	1.6	signalling.receptor kinases.leucine rich repeat XI	"CLV1 (CLAVATA 1); ATP binding / kinase/ protein serine/threonine kinase Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negat"
MSGI1_109506	NODE_52814_length_123_cov_5.065041	32.7	2.5	4.7	0.5	-3.7	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_116902	NODE_52821_length_71_cov_40.436619	19.8	18.8	3.7	13.7	0	0	2.4	0	secondary metabolism.simple phenols	"LAC12 (laccase 12); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to LAC3 (laccase 3), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G30210.1); simila"
MSGI1_55243	NODE_52858_length_225_cov_10.964444	29.7	9	18.3	21.4	-1.7	0	0	0	protein.folding	"immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein  Identical to Probable FKBP-type peptidyl-prolyl cis-trans isomerase 2, chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) [Arabidopsis Thaliana] (GB:O22870;GB:Q940C0); simil"
MSGI1_120301	NODE_52870_length_61_cov_33.590164	18.3	3.2	0.4	0.4	-2.5	0	5.5	0	not assigned.unknown	not assigned.unknown
MSGI1_23719	NODE_52882_length_445_cov_24.112360	19.9	21.4	55.7	14	0	-2	-1.5	0	redox.ascorbate and glutathione.glutathione	"ATGPX5 (GLUTATHIONE PEROXIDASE 5); glutathione peroxidase Encodes glutathione peroxidase. Identical to Probable glutathione peroxidase 5 (EC 1.11.1.9) (GPX5) [Arabidopsis Thaliana] (GB:Q9LYB4); similar to ATGPX4 (GLUTATHIONE PEROXIDASE 4), glutathione pe"
MSGI1_117299	NODE_52887_length_68_cov_19.573530	12.9	23.5	0.4	0.4	0	0	5	5.9	protein.degradation.ubiquitin.E3.RING	protein binding / zinc ion binding  similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G32670.1); similar to zinc finger (C3HC4-type RING finger)protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD37529.1); similar to
MSGI1_25913	NODE_5289_length_415_cov_91.766266	28.3	56.3	64.8	43.4	0	0	-1.2	0	RNA.regulation of transcription.Aux/IAA family	IAA18 (indoleacetic acid-induced protein 18); transcription factor  Identical to Auxin-responsive protein IAA18 (Indoleacetic acid-induced protein 18) (IAA18) [Arabidopsis Thaliana] (GB:O24408;GB:Q8L9I9); similar to PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1
MSGI1_25913	NODE_5289_length_415_cov_91.766266	28.3	56.3	64.8	43.4	0	0	-1.2	0	hormone metabolism.auxin.induced-regulated-responsive-activated	IAA18 (indoleacetic acid-induced protein 18); transcription factor  Identical to Auxin-responsive protein IAA18 (Indoleacetic acid-induced protein 18) (IAA18) [Arabidopsis Thaliana] (GB:O24408;GB:Q8L9I9); similar to PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1
MSGI1_31951	NODE_52890_length_351_cov_7.595442	10.7	0.2	3.3	0.2	-5.7	0	0	0	stress.biotic	disease resistance-responsive family protein / dirigent family protein  similar to disease resistance-responsive family protein / dirigent family protein [Arabidopsis thaliana] (TAIR:AT1G64160.1); similar to dirigent-like protein [Thuja plicata] (GB:AAF25
MSGI1_115742	NODE_52940_length_81_cov_18.308641	18.9	32	6.9	10.3	0	0	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_37132	NODE_52960_length_312_cov_13.964744	20	1.5	9.7	1.9	-3.7	0	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	"auxin-responsive protein, putative  similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G21210.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12778.1); contains InterPro domain Auxin responsive SAUR prot"
MSGI1_12637	NODE_5301_length_669_cov_194.645737	47.7	26.4	19.1	30.2	0	0	1.3	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L10A (RPL10aA)  Identical to 60S ribosomal protein L10a-1 (RPL10AA) [Arabidopsis Thaliana] (GB:Q8VZB9;GB:Q9SJF4); similar to 60S ribosomal protein L10A (RPL10aB) [Arabidopsis thaliana] (TAIR:AT2G27530.2); similar to Os02g0321900 [Ory
MSGI1_107475	NODE_53012_length_125_cov_15.824000	8.4	12.1	0.3	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_61203	NODE_5303_length_205_cov_8.780488	2	2.1	20.1	5.8	0	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_116284	NODE_53039_length_76_cov_23.171053	1.2	13.8	2.8	2.6	3.5	0	0	0	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  Identical to RING-H2 finger protein ATL5H precursor (ATL5H) [Arabidopsis Thaliana] (GB:Q8LGA5); similar to ATL6 (Arabidopsis T?xicos en Levadura 6), protein binding / zinc ion binding [Arabidopsis thal"
MSGI1_39069	NODE_53065_length_300_cov_6.416667	1.8	10.8	16.5	0.8	0	-4.4	-3.2	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. simi"
MSGI1_5108	NODE_5309_length_1048_cov_217.923660	100.9	52.6	166.8	131	0	0	0	-1.3	protein.degradation.cysteine protease	"XCP2 (XYLEM CYSTEINE PEPTIDASE 2); cysteine-type peptidase/ peptidase  Identical to Xylem cysteine proteinase 2 precursor (EC 3.4.22.-) (AtXCP2) (XCP2) [Arabidopsis Thaliana] (GB:Q9LM66;GB:Q9SYQ2); similar to XCP1 (XYLEM CYSTEINE PEPTIDASE 1), cysteine-t"
MSGI1_34627	NODE_53104_length_330_cov_10.648485	13.7	1.2	4	3.3	-3.5	0	0	0	signalling.receptor kinases.legume-lectin	"lectin protein kinase, putative  similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G53810.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98991.1); similar to lec"
MSGI1_92253	NODE_53109_length_143_cov_13.699301	4.5	14	2.4	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_25842	NODE_53125_length_416_cov_11.012019	14.2	3.7	0.2	0.5	0	0	6.1	0	misc.UDP glucosyl and glucoronyl transferases	"UGT84A4; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity. similar to UGT"
MSGI1_67504	NODE_53156_length_188_cov_17.159575	19.2	45.8	49.3	13.9	1.3	-1.8	-1.4	1.7	RNA.regulation of transcription.PHOR1	"U-box domain-containing protein  similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G65920.1); similar to U-box domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94807.1); contains InterPro domai"
MSGI1_95312	NODE_53272_length_139_cov_44.100719	116.5	22.8	8.7	20.3	-2.4	0	3.7	0	PS.lightreaction.photosystem II.LHC-II	"LHB1B1 (Photosystem II light harvesting complex gene 1.4); chlorophyll binding Photosystem II type I chlorophyll            a/b-binding protein similar to CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G2993"
MSGI1_59916	NODE_53318_length_209_cov_18.569378	8.6	20.5	37.4	16.5	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_90820	NODE_53327_length_145_cov_10.131035	20.5	10.5	4.5	1.2	0	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_90819	NODE_5334_length_145_cov_4.834483	4.9	0.4	24.5	10.7	0	0	-2.3	-4.7	misc.glutathione S transferases	ATGSTF9 (Arabidopsis thaliana Glutathione S-transferase (class phi) 9); glutathione transferase Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTF10 (EARLY DEHYDRATIO
MSGI1_24062	NODE_5337_length_439_cov_13.567198	12.4	27.7	40.4	46.7	0	0	-1.7	0	stress.biotic	"PAD4 (PHYTOALEXIN DEFICIENT 4); triacylglycerol lipase Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, anothe"
MSGI1_31586	NODE_5339_length_354_cov_6.853107	9.6	25.1	0.4	0.4	0	0	0	6	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_34202	NODE_53396_length_333_cov_42.357357	33.1	19	10.6	15.7	0	0	1.6	0	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	catalytic/ coenzyme binding  similar to putative NADH:ubiquinone oxidoreductase 39 kDa subunit precursor [Chlamydomonas reinhardtii] (GB:AAQ55458.1); similar to Os02g0816800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048516.1); contains InterPro d
MSGI1_48556	NODE_5342_length_252_cov_335.246033	261	237.7	120.3	199.3	0	0	1.1	0	signalling.calcium	CAM7 (CALMODULIN 7); calcium ion binding EF hand domain protein encodes a calmodulin. Can functionally complement a yeast CaM mutant. Identical to Calmodulin-7 (CaM-7) (CAM7) [Arabidopsis Thaliana] (GB:P59220); Identical to Calmodulin-6 (CaM-6) (CAM6) [A
MSGI1_80504	NODE_53448_length_161_cov_9.472050	25.3	6.1	5.9	3.2	-2.1	0	2.1	0	cell wall	NIP4;2/NLM5 (NOD26-LIKE INTRINSIC PROTEIN 4;2); water channel  Identical to Probable aquaporin NIP4.2 (NOD26-like intrinsic protein 4.2) (Nodulin- 26-like major intrinsic protein 5) (AtNLM5) (Protein NLM5) (NodLikeMip5) (NIP4.2) [Arabidopsis Thaliana] (G
MSGI1_80504	NODE_53448_length_161_cov_9.472050	25.3	6.1	5.9	3.2	-2.1	0	2.1	0	transport.Major Intrinsic Proteins.unspecified	NIP4;2/NLM5 (NOD26-LIKE INTRINSIC PROTEIN 4;2); water channel  Identical to Probable aquaporin NIP4.2 (NOD26-like intrinsic protein 4.2) (Nodulin- 26-like major intrinsic protein 5) (AtNLM5) (Protein NLM5) (NodLikeMip5) (NIP4.2) [Arabidopsis Thaliana] (G
MSGI1_80504	NODE_53448_length_161_cov_9.472050	25.3	6.1	5.9	3.2	-2.1	0	2.1	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_60523	NODE_53457_length_207_cov_10.183575	3.6	5.9	18.6	3.4	0	-2.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_68723	NODE_5346_length_185_cov_229.470276	108.3	28.9	29.4	52.9	-1.9	0	1.9	0	nucleotide metabolism.phosphotransfer and pyrophosphatases.nucleoside diphosphate kinase	"NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3); ATP binding / nucleoside diphosphate kinase nucleoside diphosphate kinase 3 (ndpk3) Identical to Nucleoside diphosphate kinase III, chloroplast/mitochondrial precursor (EC 2.7.4.6) (NDK III) (NDP kinase III) (NDPK"
MSGI1_56870	NODE_53465_length_219_cov_14.872146	2.4	16.3	0.5	6.4	2.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_49416	NODE_53518_length_248_cov_11.298388	1.3	13.4	2.8	3.7	3.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_48347	NODE_53522_length_253_cov_14.624506	6.1	12.2	0	0	0	0	0	4.6	"misc.gluco-, galacto- and mannosidases"	glycoside hydrolase family 2 protein  similar to hypothetical protein VchoV5_02000978 [Vibrio cholerae V51] (GB:ZP_01486357.1); similar to beta-galactosidase [synthetic construct] (GB:AAC26782.1); similar to COG3250: Beta-galactosidase/beta-glucuronidase
MSGI1_32998	NODE_53561_length_342_cov_9.406433	11	11.3	0	0	0	0	4.5	4.5	not assigned.unknown	not assigned.unknown
MSGI1_30390	NODE_53562_length_365_cov_4.616438	4.6	3.7	16.5	1.1	0	-3.9	0	0	signalling.receptor kinases.DUF 26	"protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23150.1); similar to CRK10 (CYSTEINE-RICH RLK10), kinase [Arabidopsis thaliana] (TAIR:AT4G23180.1); similar to CRK6 (CYSTEINE-RICH RLK 6), kinase [Ar"
MSGI1_11299	NODE_5357_length_713_cov_37.454418	26.4	6.1	3.8	3	-2.1	0	2.8	0	Biodegradation of Xenobiotics	"glyoxal oxidase-related  similar to glyoxal oxidase-related [Arabidopsis thaliana] (TAIR:AT1G75620.1); similar to glyoxal oxidase [Vitis pseudoreticulata] (GB:ABA42922.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contain"
MSGI1_53687	NODE_53593_length_231_cov_9.415585	11.8	0.4	0.5	0.2	-4.9	0	4.6	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 53 precursor (EC 1.11.1.7) (Atperox P53) (ATPA2) (PER53) [Arabidopsis Thaliana] (GB:Q42578); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G06730.1); similar to Peroxidase A2 (GB:P80679); co"
MSGI1_29586	NODE_53595_length_373_cov_14.713137	2.6	19.7	16.7	10.4	2.9	0	0	0	stress.biotic.respiratory burst	ATRBOHB (RESPIRATORY BURST OXIDASE HOMOLOG B); FAD binding / calcium ion binding / iron ion binding / oxidoreductase  similar to RBOHD (RESPIRATORY BURST OXIDASE PROTEIN D) [Arabidopsis thaliana] (TAIR:AT5G47910.1); similar to ATRBOHA (RESPIRATORY BURST
MSGI1_120276	NODE_5360_length_61_cov_20.754099	11	11.7	0	0	0	0	4.5	4.5	not assigned.unknown	not assigned.unknown
MSGI1_111438	NODE_5362_length_118_cov_253.652542	210.7	75.9	72.2	106.1	-1.5	0	1.5	0	PS.calvin cyle.phosphoglycerate kinase	"phosphoglycerate kinase, putative  similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2); similar to PGK1 (PHOSPHOGLYCERATE KINASE 1), phosphoglycerate kinase [Arabidopsis thaliana] (TAIR:AT3G12780.1); similar to chloroplast"
MSGI1_79310	NODE_5364_length_163_cov_52.024540	44	8.8	28.9	30	-2.3	0	0	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_20886	NODE_5365_length_486_cov_103.020576	85.9	184.9	0.3	0.2	1.1	0	8.2	9.9	not assigned.unknown	not assigned.unknown
MSGI1_120273	NODE_5368_length_61_cov_18.704918	9.5	17.8	0	0	0	0	0	5.2	protein.degradation.ubiquitin.E3.SCF.FBOX	F-box family protein (FBW2)  similar to F-box family protein (FBL20) [Arabidopsis thaliana] (TAIR:AT4G05460.1); similar to Os06g0219700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057164.1); similar to N7 protein [Medicago truncatula] (GB:CAA76808.
MSGI1_56617	NODE_53680_length_220_cov_18.799999	3.6	20.6	13	13.2	2.5	0	0	0	protein.postranslational modification	MKP1 (MKP1); MAP kinase phosphatase MAP kinase phosphatase (MKP1) similar to MAP kinase phosphatase [Zea mays] (GB:AAK29383.1); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340)
MSGI1_42902	NODE_5369_length_279_cov_16.770609	13.5	25.6	4.8	4.1	0	0	0	2.6	not assigned.unknown	not assigned.unknown
MSGI1_95311	NODE_53732_length_139_cov_6.755396	5.3	2.5	19.9	36.4	0	0	0	-3.9	minor CHO metabolism.others	aldose 1-epimerase family protein  similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT3G47800.1); similar to Galactose mutarotase-like [Medicago truncatula] (GB:ABE90391.1); contains InterPro domain Galactose mutarotase-like; (Int
MSGI1_90817	NODE_5375_length_145_cov_43.303448	40.9	200.2	77.4	205.8	2.3	1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_23772	NODE_5377_length_444_cov_96.500000	65.2	16.3	12.8	33	-2	0	2.3	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_70078	NODE_53810_length_182_cov_5.598901	19.3	4.1	3.4	2.9	0	0	2.5	0	stress.biotic	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_70078	NODE_53810_length_182_cov_5.598901	19.3	4.1	3.4	2.9	0	0	2.5	0	cell wall	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_112900	NODE_53837_length_106_cov_74.990562	16.4	9.5	0.3	0	0	0	5.8	0	C1-metabolism.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_112900	NODE_53837_length_106_cov_74.990562	16.4	9.5	0.3	0	0	0	5.8	0	PS.photorespiration.serine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_112900	NODE_53837_length_106_cov_74.990562	16.4	9.5	0.3	0	0	0	5.8	0	amino acid metabolism.synthesis.serine-glycine-cysteine group.glycine.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_114140	NODE_53876_length_96_cov_14.812500	10.6	4.8	0.3	0	0	0	5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_75115	NODE_53890_length_171_cov_42.625732	36.7	18.3	12	16.9	0	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_54452	NODE_53910_length_228_cov_10.302631	10.4	10.8	0.2	0	0	0	5.7	4.4	not assigned.unknown	not assigned.unknown
MSGI1_117406	NODE_53925_length_67_cov_18.910448	29.9	12	0.4	0	0	0	6.2	4.6	not assigned.unknown	not assigned.unknown
MSGI1_75114	NODE_53941_length_171_cov_12.730994	6.4	14.7	20.5	1.5	0	-3.8	0	3.3	not assigned.unknown	not assigned.unknown
MSGI1_4430	NODE_5398_length_1119_cov_30.506702	14	33.6	11.9	7.3	0	0	0	2.2	stress.biotic	EDS1 (ENHANCED DISEASE SUSCEPTIBILITY 1); signal transducer/ triacylglycerol lipase Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases. similar to lipase class 3 family protein / disease resistance
MSGI1_38572	NODE_53981_length_303_cov_14.584158	24.7	16.1	2.8	4.3	0	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_63647	NODE_54009_length_198_cov_22.939394	8.7	18	0.4	0.4	0	0	0	5.5	misc.glutathione S transferases	ATGSTU7 (GLUTATHIONE S-TRANSFERASE 25); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by
MSGI1_115483	NODE_5402_length_83_cov_50.168674	22.9	36.3	0	0	0	0	5.5	6.2	not assigned.unknown	not assigned.unknown
MSGI1_86025	NODE_5406_length_152_cov_54.605263	34.6	10.8	12.1	16.5	-1.7	0	1.5	0	"misc.oxidases - copper, flavone etc."	"ATPAO3 (POLYAMINE OXIDASE 3); oxidoreductase  similar to ATPAO2 (POLYAMINE OXIDASE 2), amine oxidase [Arabidopsis thaliana] (TAIR:AT2G43020.1); similar to amine oxidase family protein [Musa acuminata] (GB:ABF69974.1); similar to H0215F08.3 [Oryza sativa"
MSGI1_10476	NODE_5409_length_743_cov_27.215343	19	17.5	0.1	0	0	0	7.6	5.1	DNA.unspecified	3'-5' exonuclease domain-containing protein  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G12460.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87022.1); similar to OSIGBa0101A01.4 [Oryza sativa (indica
MSGI1_26524	NODE_54100_length_407_cov_9.181818	4.1	6.4	15.2	26.4	0	0	0	-2	hormone metabolism.gibberelin.synthesis-degradation	"2-oxoglutarate-dependent dioxygenase, putative  similar to AOP1 (2-oxoglutarate?dependent dioxygenase 1.1), oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of on"
MSGI1_23175	NODE_54105_length_454_cov_11.546255	12.5	6.8	3.9	19.4	0	2.3	0	0	amino acid metabolism.degradation.glutamate family.proline	"ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5, PROLINE OXIDASE); proline dehydrogenase Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress.  The pro"
MSGI1_120264	NODE_54116_length_61_cov_45.081966	29.3	18.3	1.6	0.8	0	0	4.2	4.5	hormone metabolism.auxin.induced-regulated-responsive-activated	IAA8 (indoleacetic acid-induced protein 8); transcription factor IAA8 (IAA8) gene is auxin inducible. Identical to Auxin-responsive protein IAA8 (Indoleacetic acid-induced protein 8) (IAA8) [Arabidopsis Thaliana] (GB:Q38826); similar to IAA9 (indoleaceti
MSGI1_120264	NODE_54116_length_61_cov_45.081966	29.3	18.3	1.6	0.8	0	0	4.2	4.5	RNA.regulation of transcription.Aux/IAA family	IAA8 (indoleacetic acid-induced protein 8); transcription factor IAA8 (IAA8) gene is auxin inducible. Identical to Auxin-responsive protein IAA8 (Indoleacetic acid-induced protein 8) (IAA8) [Arabidopsis Thaliana] (GB:Q38826); similar to IAA9 (indoleaceti
MSGI1_112899	NODE_54117_length_106_cov_18.207546	27.3	14.2	7.9	22.9	0	0	1.8	0	C1-metabolism.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_112899	NODE_54117_length_106_cov_18.207546	27.3	14.2	7.9	22.9	0	0	1.8	0	amino acid metabolism.synthesis.serine-glycine-cysteine group.glycine.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_112899	NODE_54117_length_106_cov_18.207546	27.3	14.2	7.9	22.9	0	0	1.8	0	PS.photorespiration.serine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_100095	NODE_54121_length_133_cov_2.796993	2.9	2	5	15.2	0	0	0	-2.9	cell wall	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_100095	NODE_54121_length_133_cov_2.796993	2.9	2	5	15.2	0	0	0	-2.9	stress.biotic	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_65495	NODE_54148_length_193_cov_21.025908	27	1.6	46.2	4.5	-4.1	-3.4	0	0	secondary metabolism.simple phenols	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_102778	NODE_54166_length_130_cov_20.992308	20.7	0.9	10.4	0.3	-4.5	-5.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_68721	NODE_54172_length_185_cov_10.102703	16.4	11.4	1.2	5.5	0	0	3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_45323	NODE_54188_length_267_cov_10.067416	10.8	7.5	0.1	0	0	0	6.8	0	protein.targeting.secretory pathway.ER	"ER lumen protein retaining receptor, putative / HDEL receptor, putative  similar to ERD2 (ER lumen protein retaining receptor 2), receptor [Arabidopsis thaliana] (TAIR:AT1G29330.1); similar to ER lumen protein retaining receptor (HDEL receptor) (PGP169-1"
MSGI1_49415	NODE_5419_length_248_cov_9.995968	13.7	12.2	52.2	11.8	0	-2.1	-1.9	0	development.unspecified	caleosin-related family protein  similar to caleosin-related family protein [Arabidopsis thaliana] (TAIR:AT1G70670.1); similar to Os06g0254700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057304.1); similar to putative ABA-induced protein [Cynodon d
MSGI1_20770	NODE_54222_length_488_cov_10.329918	9.2	3.1	48.8	4.6	0	-3.4	-2.4	0	protein.degradation	"latex-abundant protein, putative (AMC9) / caspase family protein  similar to latex abundant protein, putative (AMC5) / caspase family protein [Arabidopsis thaliana] (TAIR:AT1G79320.1); similar to Peptidase C14, caspase catalytic subunit p20 [Medicago tru"
MSGI1_68316	NODE_54246_length_186_cov_21.161291	29.5	61.9	36.7	73.5	1.1	1	0	0	protein.degradation.ubiquitin	phosphatidylinositol 3- and 4-kinase family protein  similar to phosphatidylinositol 3- and 4-kinase family protein [Arabidopsis thaliana] (TAIR:AT2G03890.1); similar to phosphatidylinositol 3- and 4-kinase family protein [Arabidopsis thaliana] (TAIR:AT1
MSGI1_40642	NODE_54263_length_291_cov_15.793815	22.9	26.5	10.3	35	0	1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_88026	NODE_54279_length_149_cov_51.140938	74.4	33.9	5.3	4.1	-1.1	0	3.8	3	protein.synthesis.misc ribososomal protein	"STV1 (SHORT VALVE1); structural constituent of ribosome RPL24B encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B. Mutants showed defects in"
MSGI1_66230	NODE_54283_length_191_cov_9.984293	6.7	1.8	34.3	4.8	0	-2.8	-2.4	0	protein.degradation	"latex-abundant protein, putative (AMC9) / caspase family protein  similar to latex abundant protein, putative (AMC5) / caspase family protein [Arabidopsis thaliana] (TAIR:AT1G79320.1); similar to Peptidase C14, caspase catalytic subunit p20 [Medicago tru"
MSGI1_66229	NODE_5429_length_191_cov_7.272251	0.5	2.5	12.9	3.6	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_41010	NODE_54290_length_289_cov_7.107266	8.7	3.1	15.5	68	0	2.1	0	-4.5	amino acid metabolism.degradation.glutamate family.proline	"proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative  similar to ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5, PROLINE OXIDASE), proline dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G30775.1); similar to proline dehydrogenase"
MSGI1_120253	NODE_54294_length_61_cov_23.491804	11.2	8.8	0.4	0	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_120252	NODE_54295_length_61_cov_25.245901	13.2	2	23.5	3.7	0	-2.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_71356	NODE_5431_length_179_cov_7.441341	7.9	14.7	0.2	0	0	0	0	4.9	cell wall	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G30600.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabid"
MSGI1_71356	NODE_5431_length_179_cov_7.441341	7.9	14.7	0.2	0	0	0	0	4.9	protein.degradation.subtilases	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G30600.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabid"
MSGI1_70961	NODE_54313_length_180_cov_4.816667	4.8	13	1.4	0.6	0	0	0	4.4	not assigned.unknown	not assigned.unknown
MSGI1_79304	NODE_54321_length_163_cov_7.607362	1.4	10.5	2.8	0.2	0	0	0	5.7	not assigned.unknown	not assigned.unknown
MSGI1_117828	NODE_54323_length_64_cov_84.796875	54.3	57.9	21.8	54.7	0	1.3	1.3	0	RNA.transcription	"RDR1 (RNA-DEPENDENT RNA POLYMERASE 1); RNA-directed RNA polymerase/ nucleic acid binding Encodes RNA-dependent RNA polymerase.   While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in inf"
MSGI1_93000	NODE_54326_length_142_cov_23.211267	16.6	19.2	52.2	14.8	0	-1.8	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_48136	NODE_54347_length_254_cov_11.185040	5.5	12	0.6	0.8	0	0	0	3.9	protein.degradation.ubiquitin.proteasom	"26S proteasome regulatory subunit, putative  similar to 26S proteasome regulatory subunit, putative [Arabidopsis thaliana] (TAIR:AT1G04810.1); similar to Armadillo-like helical [Medicago truncatula] (GB:ABE85726.1); similar to B0402A04.3 [Oryza sativa (i"
MSGI1_96870	NODE_54355_length_137_cov_28.656935	9.6	13.7	33.9	14.7	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_120247	NODE_5438_length_61_cov_72.557381	58.6	25.2	8	18.5	-1.2	0	2.9	0	cell wall.cell wall proteins.RGP	"RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1) reversibly glycosylated polypeptide possibly involved in plant cell wall synthesis similar to RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3), alpha-1,4-glucan-protein synthase (UDP-forming) [Arabidopsis thaliana"
MSGI1_63644	NODE_54416_length_198_cov_20.419191	0.8	22.4	2.1	0.4	4.8	0	0	5.8	not assigned.unknown	not assigned.unknown
MSGI1_101865	NODE_54451_length_131_cov_27.694656	13.4	11.9	0	0	0	0	4.7	4.6	not assigned.unknown	not assigned.unknown
MSGI1_45574	NODE_54465_length_266_cov_22.977444	24	25.9	0.6	0.6	0	0	5.3	5.4	protein.degradation	ATAPP1 (aminopeptidase P1) Arabidopsis aminopeptidase P1 similar to aminopeptidase [Arabidopsis thaliana] (TAIR:AT3G05350.1); similar to Xaa-Pro aminopeptidase 2 [Solanum lycopersicum] (GB:CAC59824.1); similar to metallopeptidase family M24 containing pr
MSGI1_48135	NODE_5447_length_254_cov_29.043306	18	13	39.5	11.3	0	-1.8	0	0	misc.UDP glucosyl and glucoronyl transferases	exostosin family protein  similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT4G13990.1); similar to Exostosin-like [Medicago truncatula] (GB:ABE79352.1); contains InterPro domain Exostosin-like; (InterPro:IPR004263)
MSGI1_120239	NODE_54473_length_61_cov_19.475410	12.3	0.5	0.4	0	-4.6	0	4.9	0	secondary metabolism.flavonoids.anthocyanins.leucocyanidin oxygenase	"LDOX (TANNIN DEFICIENT SEED 4) encodes leucoanthocyanidin dioxygenase, which is involved in proanthocyanin biosynthesis. Mutant analysis suggests that this gene is also involved in vacuole formation. Identical to Leucoanthocyanidin dioxygenase (EC 1.14.1"
MSGI1_120238	NODE_5448_length_61_cov_261.311462	78.9	44.2	21.5	37.5	0	0	1.9	0	TCA / org. transformation.other organic acid transformaitons.atp-citrate lyase	ACLB-1 (ATP-citrate lyase B-1) One of the two genes encoding subunit B of the trimeric enzyme ATP Citrate lyase similar to ACLB-2 (ATP-citrate lyase B-2) [Arabidopsis thaliana] (TAIR:AT5G49460.1); similar to ATP citrate lyase a-subunit [Lupinus albus] (G
MSGI1_43243	NODE_54487_length_277_cov_9.862816	9.4	33.6	3	9.5	1.8	0	0	1.8	transport.metal	"HMA2 (Heavy metal ATPase 2); cadmium-transporting ATPase encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc Identical to Putative cadmium/zinc-transporting ATPase 3 (EC 3.6.3.3) (EC 3.6.3.5) (HMA2) [Arabidopsis Thaliana] (GB:Q9SZW4"
MSGI1_114139	NODE_54489_length_96_cov_8.406250	5.5	12.3	0	0	0	0	0	4.6	hormone metabolism.cytokinin.signal transduction	WOL (CYTOKININ RESPONSE 1) Histidine kinase: cytokinin-binding receptor that transduces cytokinin signals across the plasma membrane similar to AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) [Arabidopsis thaliana] (TAIR:AT1G27320.1); similar to AHK2 (ARABIDOPSIS
MSGI1_92247	NODE_5449_length_143_cov_325.258728	144.5	82.1	47.6	66.1	0	0	1.6	0	TCA / org. transformation.other organic acid transformaitons.atp-citrate lyase	ACLB-1 (ATP-citrate lyase B-1) One of the two genes encoding subunit B of the trimeric enzyme ATP Citrate lyase similar to ACLB-2 (ATP-citrate lyase B-2) [Arabidopsis thaliana] (TAIR:AT5G49460.1); similar to ATP citrate lyase a-subunit [Lupinus albus] (G
MSGI1_102775	NODE_545_length_130_cov_52.230770	54	15	11.4	11.5	-1.8	0	2.2	0	DNA.synthesis/chromatin structure.histone	"histone H2B, putative  Identical to Histone H2B.10 (HTB2) [Arabidopsis Thaliana] (GB:Q9FFC0;GB:Q96516); similar to histone H2B, putative [Arabidopsis thaliana] (TAIR:AT3G46030.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold;"
MSGI1_94550	NODE_545_length_140_cov_13.535714	3.1	0.8	4.6	32.9	0	2.8	0	-5.4	amino acid metabolism.degradation.glutamate family.proline	"proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative  similar to ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5, PROLINE OXIDASE), proline dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G30775.1); similar to proline dehydrogenase"
MSGI1_28850	NODE_54508_length_381_cov_19.818897	10.8	10.4	38.7	8.1	0	-2.3	-1.8	0	glycolysis.PEPCK	PPCK2 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2); kinase Encodes a second Arabidopsis phosphoenolpyruvate carboxylase kinase gene product with a different expression pattern from PPCK1. Expression of the gene is upregulated by exposure of the plant to li
MSGI1_120236	NODE_54514_length_61_cov_22.737705	5.4	14	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_74622	NODE_5453_length_172_cov_210.331390	89.5	72.3	109.4	275.7	0	1.3	0	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_10263	NODE_54552_length_751_cov_12.347537	11.9	47.4	53.2	32.3	2	0	-2.2	0	protein.degradation.ubiquitin.E3.SCF.FBOX	kelch repeat-containing F-box family protein  similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G15670.1); similar to kelch repeat-containing F-box-like [Oryza sativa (japonica cultivar-group)] (GB:BAD25000.1); conta
MSGI1_120229	NODE_54568_length_61_cov_26.786884	11.2	19.2	75.4	5.8	0	-3.7	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_86017	NODE_54569_length_152_cov_10.842105	8.9	6.7	29.7	6.8	0	-2.1	-1.7	0	cell wall.precursor synthesis.UGD	"UDP-glucose 6-dehydrogenase, putative  similar to ATUGD1/UGD1 (UDP-glucose dehydrogenase 1), UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G26570.1); similar to UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G29360.2); similar"
MSGI1_117297	NODE_54575_length_68_cov_39.808823	1.6	15.3	0.4	0.4	3.3	0	0	5.3	transport.ABC transporters and multidrug resistance systems	"PGP18 (P-GLYCOPROTEIN 18); ATPase, coupled to transmembrane movement of substances  Identical to Putative multidrug resistance protein 20 (P-glycoprotein 18) (MDR20) [Arabidopsis Thaliana] (GB:Q9LSJ5); similar to ABC transporter family protein [Arabidops"
MSGI1_113033	NODE_54595_length_105_cov_30.009523	28	23.3	0.9	2.7	0	0	5	3.1	protein.synthesis.initiation	"eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative  Identical to DEAD-box ATP-dependent RNA helicase 2 (EC 3.6.1.-) (RH2) [Arabidopsis Thaliana] (GB:Q94A52;GB:Q9ZS14); similar to eukaryotic translat"
MSGI1_113033	NODE_54595_length_105_cov_30.009523	28	23.3	0.9	2.7	0	0	5	3.1	RNA.processing	"eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative  Identical to DEAD-box ATP-dependent RNA helicase 2 (EC 3.6.1.-) (RH2) [Arabidopsis Thaliana] (GB:Q94A52;GB:Q9ZS14); similar to eukaryotic translat"
MSGI1_113033	NODE_54595_length_105_cov_30.009523	28	23.3	0.9	2.7	0	0	5	3.1	cell wall	"eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative  Identical to DEAD-box ATP-dependent RNA helicase 2 (EC 3.6.1.-) (RH2) [Arabidopsis Thaliana] (GB:Q94A52;GB:Q9ZS14); similar to eukaryotic translat"
MSGI1_113033	NODE_54595_length_105_cov_30.009523	28	23.3	0.9	2.7	0	0	5	3.1	cell wall	"eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative  Identical to DEAD-box ATP-dependent RNA helicase 2 (EC 3.6.1.-) (RH2) [Arabidopsis Thaliana] (GB:Q94A52;GB:Q9ZS14); similar to eukaryotic translat"
MSGI1_99286	NODE_54607_length_134_cov_19.261194	14.4	70.3	44.3	15.2	2.3	-1.5	-1.6	2.2	RNA.processing.ribonucleases	"CCR4-NOT transcription complex protein, putative  similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT5G22250.1); similar to CCR4 associated factor 1-related protein [Capsicum annuum] (GB:ABG66307.1); contains Inter"
MSGI1_100089	NODE_54614_length_133_cov_20.293234	25	8	6.5	13.2	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_70958	NODE_54624_length_180_cov_6.688889	1.8	4.9	37.2	7.3	0	-2.3	-4.4	0	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS11 (Arabidopsis thaliana trehalose phosphatase/synthase 11); transferase, transferring glycosyl groups Encodes an enzyme putatively involved in trehalose biosynthesis.  The protein has a trehalose synthase (TPS)-like domain that may or may not be ac"
MSGI1_29506	NODE_5463_length_374_cov_9.756684	9.6	21	3.2	4.4	0	0	0	2.3	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_29506	NODE_5463_length_374_cov_9.756684	9.6	21	3.2	4.4	0	0	0	2.3	misc.GDSL-motif lipase	GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G26430.1); similar to Os07g0586200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060129.1); similar to hypothetical pro
MSGI1_120225	NODE_54639_length_61_cov_12.262295	11	11	0	1.6	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_49923	NODE_5465_length_246_cov_18.394308	23.2	24.5	4.9	3.4	0	0	2.2	2.8	Biodegradation of Xenobiotics.hydroxyacylglutathione hydrolase	"ETHE1/GLX2-3 (GLYOXALASE 2-3); hydroxyacylglutathione hydrolase  Identical to Putative hydroxyacylglutathione hydrolase 3, mitochondrial precursor (EC 3.1.2.6) (Glyoxalase II) (Glx II) (GLY3) [Arabidopsis Thaliana] (GB:Q9C8L4;GB:Q93VR2;GB:Q96332;GB:Q9LPH"
MSGI1_49923	NODE_5465_length_246_cov_18.394308	23.2	24.5	4.9	3.4	0	0	2.2	2.8	amino acid metabolism.degradation.aspartate family.threonine	"ETHE1/GLX2-3 (GLYOXALASE 2-3); hydroxyacylglutathione hydrolase  Identical to Putative hydroxyacylglutathione hydrolase 3, mitochondrial precursor (EC 3.1.2.6) (Glyoxalase II) (Glx II) (GLY3) [Arabidopsis Thaliana] (GB:Q9C8L4;GB:Q93VR2;GB:Q96332;GB:Q9LPH"
MSGI1_17424	NODE_54654_length_549_cov_17.867031	2.3	26.4	2.5	14.9	3.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_62975	NODE_5467_length_200_cov_7.545000	0.4	1.1	17.5	18.4	0	0	-5.5	-4.1	protein.synthesis.elongation	"LOS1 (Low expression of osmotically responsive genes 1); translation elongation factor/ translation factor, nucleic acid binding encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene s"
MSGI1_120217	NODE_54726_length_61_cov_10.819673	16.6	1.8	20.3	18.9	-3.2	0	0	-3.4	not assigned.unknown	not assigned.unknown
MSGI1_86016	NODE_54731_length_152_cov_5.894737	3.5	8.1	33.8	8.5	0	-2	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_112766	NODE_54734_length_107_cov_21.616823	6.8	18.3	0.6	0	0	0	0	5.2	not assigned.unknown	not assigned.unknown
MSGI1_120215	NODE_54738_length_61_cov_11.016394	6.5	12.8	0.4	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_81631	NODE_54747_length_159_cov_6.345912	3.6	12.4	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_43441	NODE_54773_length_276_cov_24.014492	23.8	13.2	4.9	10.2	0	0	2.3	0	cell wall.cell wall proteins.AGPs	FLA1 (FLA1) fasciclin-like arabinogalactan-protein 1 (Fla1) Identical to Fasciclin-like arabinogalactan protein 1 precursor (FLA1) [Arabidopsis Thaliana] (GB:Q9FM65;GB:Q8L8T1); similar to FLA2 (FLA2) [Arabidopsis thaliana] (TAIR:AT4G12730.1); similar to p
MSGI1_26903	NODE_54785_length_403_cov_25.126551	20	9.4	25	6.5	0	-1.9	0	0	protein.postranslational modification	"CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); kinase Encodes a CBL-interacting protein kinase with similarity to SOS2 similar to CIPK23 (CBL-INTERACTING PROTEIN KINASE 23), kinase [Arabidopsis thaliana] (TAIR:AT1G30270.2); similar to CBL-interacting protein"
MSGI1_120213	NODE_54785_length_61_cov_38.245903	3.7	24.5	3.2	6.2	2.7	0	0	2	not assigned.unknown	not assigned.unknown
MSGI1_29022	NODE_54799_length_379_cov_16.860159	26.7	0.2	4.5	0.2	-7.1	0	2.6	0	cell wall.degradation.pectate lyases and polygalacturonases	pectate lyase family protein  Identical to Probable pectate lyase 5 precursor (EC 4.2.2.2) [Arabidopsis Thaliana] (GB:Q9FXD8;GB:Q8L8V9;GB:Q8W116); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G24780.1); similar to pectate lyase
MSGI1_83478	NODE_54814_length_156_cov_15.551282	14.5	1.3	2.7	1.4	-3.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_111555	NODE_54821_length_117_cov_21.273504	11.7	9.4	12.1	65.7	0	2.4	0	-2.8	not assigned.unknown	not assigned.unknown
MSGI1_75608	NODE_54827_length_170_cov_7.358823	6.1	6.5	25.5	3.7	0	-2.8	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_113484	NODE_54829_length_102_cov_32.313725	4.9	15.6	24.2	17.3	0	0	-2.3	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1); hydrolase, hydrolyzing O-glycosyl compounds  Identical to Probable glycosyltransferase At1g55740 (EC 2.4.1.-) [Arabidopsis Thaliana] (GB:Q84VX0;GB:Q9LFZ7); similar to ATSIP2 (ARABIDOPSIS THALIANA SEED IMBI"
MSGI1_54742	NODE_54866_length_227_cov_3.876652	0.2	1.1	10.8	0.2	0	-5.8	-5.8	0	protein.degradation.ubiquitin.E3.RING	"armadillo/beta-catenin repeat family protein / U-box domain-containing protein  similar to PUB17 (PLANT U-BOX17), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G29340.1); similar to arm repeat protein [Oryza sativa (japonica cultivar-group)] ("
MSGI1_20671	NODE_54870_length_490_cov_9.261225	2.8	4.3	51.3	1.6	0	-5	-4.2	0	"metal handling.binding, chelation and storage"	"ATFP6 (FARNESYLATED PROTEIN 6); metal ion binding putative farnesylated protein (At4g38580) mRNA, complete similar to heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related [Arabidopsis thaliana] (TAIR:AT4G35060.1); similar to"
MSGI1_9055	NODE_5488_length_803_cov_17.931507	26.1	2.1	0	0	-3.6	0	5.7	0	not assigned.unknown	not assigned.unknown
MSGI1_65491	NODE_54903_length_193_cov_9.471502	11.6	15.3	35.5	6.5	0	-2.4	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_85378	NODE_54922_length_153_cov_10.692810	12.7	18.6	4.3	3	0	0	0	2.6	cell wall.cellulose synthesis	"ATCSLA09 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 4); transferase, transferring glycosyl groups encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium"
MSGI1_8159	NODE_5493_length_849_cov_16.773851	0	23	0.2	0.3	5.5	0	0	6.3	signalling.receptor kinases.legume-lectin	"lectin protein kinase, putative  similar to legume lectin family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G65600.1); similar to Protein kinase; Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE89762.1); sim"
MSGI1_35026	NODE_54931_length_327_cov_9.241590	14	19.5	4.6	3	0	0	0	2.7	not assigned.unknown	not assigned.unknown
MSGI1_65867	NODE_5496_length_192_cov_5.229167	0.4	0.8	13.6	3	0	0	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_120202	NODE_54963_length_61_cov_19.114754	15.7	10.1	1.2	2.5	0	0	3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_31020	NODE_5497_length_359_cov_9.587744	13.6	18.3	53.5	14.5	0	-1.9	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_113285	NODE_54982_length_103_cov_15.679611	13.1	42.9	0	0	1.7	0	4.7	6.4	protein.degradation	LOL3 (LSD ONE LIKE 3); caspase/ cysteine-type endopeptidase Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain similar to latex-abund
MSGI1_115945	NODE_54990_length_79_cov_19.101265	15.6	4.1	0	0	0	0	5	0	not assigned.unknown	not assigned.unknown
MSGI1_28925	NODE_5501_length_380_cov_25.297369	11.2	6.2	46	22.2	0	0	-2	0	misc.UDP glucosyl and glucoronyl transferases	UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G05680.1); similar to UDP-xylose phenolic glycosyltransferase [Solanum lycopersicum] (GB:CAI62049
MSGI1_115282	NODE_55012_length_85_cov_9.247059	7.6	34.1	2.3	11	2.2	0	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_96099	NODE_5502_length_138_cov_157.942032	55.8	24.1	22	18.6	-1.2	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_36009	NODE_55026_length_320_cov_40.549999	42.8	100.4	79.6	76.4	1.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_24596	NODE_5503_length_432_cov_102.953705	121.9	23.6	168.5	25.8	-2.4	-2.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_49922	NODE_55031_length_246_cov_7.215447	3.8	19	30.1	15.6	2.3	0	-3	0	cell wall	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein  similar to harpin-induced family protein / HIN1 family protein / harpin-responsive family protein [Arabidopsis thaliana] (TAIR:AT3G44220.1); similar to Hairpin-induced
MSGI1_34920	NODE_5506_length_328_cov_7.448171	1.6	1.8	15.4	22.8	0	0	-3.3	-3.7	not assigned.unknown	not assigned.unknown
MSGI1_75105	NODE_55094_length_171_cov_14.549707	8.7	16.9	0.4	0	0	0	0	5.1	not assigned.unknown	not assigned.unknown
MSGI1_96098	NODE_55152_length_138_cov_10.550725	11.3	0.6	2.9	1.5	-4.2	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_96098	NODE_55152_length_138_cov_10.550725	11.3	0.6	2.9	1.5	-4.2	0	0	0	secondary metabolism.flavonoids.anthocyanins	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G11180.1); similar to 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABE94015.1); contains InterPro domain"
MSGI1_48777	NODE_55184_length_251_cov_7.478087	4.6	13.9	0	0.2	0	0	0	6.1	RNA.regulation of transcription.MYB-related transcription factor family	DNA-binding family protein  similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G47390.1); similar to MYB transcription factor MYB138 [Glycine max] (GB:ABH02859.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287)
MSGI1_113283	NODE_55204_length_103_cov_26.495146	23.5	45.4	5.7	35.3	0	2.6	2	0	not assigned.unknown	not assigned.unknown
MSGI1_32646	NODE_55257_length_345_cov_9.405797	17	2.6	3.6	5.2	-2.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_11185	NODE_5526_length_717_cov_19.372385	4.9	17.8	1.2	14.4	0	3.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_101859	NODE_55274_length_131_cov_12.916031	11.5	11.3	0	0.8	0	0	4.5	0	protein.aa activation	"tRNA synthetase class I (W and Y) family protein  similar to Tryptophanyl-tRNA synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99449.2); similar to Os12g0540900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066951.1);"
MSGI1_111437	NODE_55283_length_118_cov_9.838983	10.1	21.9	0.5	3.1	0	0	0	2.8	not assigned.unknown	not assigned.unknown
MSGI1_66227	NODE_55295_length_191_cov_8.235602	5.4	15.6	0	0	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_88720	NODE_55302_length_148_cov_11.236486	8	2.3	16.5	1	0	-4	0	0	N-metabolism.N-degradation.glutamate dehydrogenase	"glutamate dehydrogenase, putative  Identical to Probable glutamate dehydrogenase 3 (EC 1.4.1.3) (GDH 3) (GSH3) [Arabidopsis Thaliana] (GB:Q9S7A0); similar to GDH2 (GLUTAMATE DEHYDROGENASE 2), oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G07440.1); simi"
MSGI1_67073	NODE_55314_length_189_cov_21.661375	27.6	12.7	1.4	9.6	0	0	4.3	0	not assigned.unknown	not assigned.unknown
MSGI1_59005	NODE_55342_length_212_cov_24.462265	18.5	13.7	0	0	0	0	5.2	4.8	not assigned.unknown	not assigned.unknown
MSGI1_103681	NODE_55351_length_129_cov_9.937984	10.8	2.6	0	0	0	0	4.4	0	hormone metabolism.ethylene.synthesis-degradation	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G55290.1); similar to 2-oxoglutarate-dependent dioxygenase [Solanum lycopersicum] (GB:BAD98961.1); contain"
MSGI1_28289	NODE_55394_length_387_cov_7.917313	11.5	15.7	0	0	0	0	4.5	5	not assigned.unknown	not assigned.unknown
MSGI1_90810	NODE_5541_length_145_cov_13.351724	13.9	9.5	0	0.2	0	0	4.8	0	RNA.regulation of transcription.Alfin-like	PHD finger family protein  Identical to PHD finger protein At5g26210 [Arabidopsis Thaliana] (GB:O81488;GB:Q8LBJ5); similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT5G20510.1); similar to PHD4 [Glycine max] (GB:ABI97243.1); contains Int
MSGI1_31584	NODE_55420_length_354_cov_9.429379	6.1	30.1	0.8	1.7	2.3	0	0	4.1	not assigned.unknown	not assigned.unknown
MSGI1_82858	NODE_5543_length_157_cov_15.414013	10	11	43	20.5	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_41353	NODE_5544_length_287_cov_49.282230	30.5	30.6	45.7	16.4	0	-1.5	0	0	protein.postranslational modification	"CIPK11 (SNF1-RELATED PROTEIN KINASE 3.22, SOS3-INTERACTING PROTEIN 4); kinase Encodes a SOS2-like protein kinase that is a member of the CBL-interacting protein kinase family. Identical to CBL-interacting serine/threonine-protein kinase 11 (EC 2.7.11.1)"
MSGI1_77119	NODE_55463_length_167_cov_17.353292	23.6	20.8	74.9	6.8	0	-3.5	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_31709	NODE_55472_length_353_cov_9.875354	2	4.4	18.7	6.4	0	0	-3.2	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_31709	NODE_55472_length_353_cov_9.875354	2	4.4	18.7	6.4	0	0	-3.2	0	hormone metabolism.ethylene.induced-regulated-responsive-activated	"universal stress protein (USP) family protein  similar to ethylene-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G09740.1); similar to universal stress protein family [Medicago truncatula] (GB:ABE78101.1); contains InterPro domain Universa"
MSGI1_101857	NODE_55479_length_131_cov_22.549618	23.1	30.2	0.3	1	0	0	6.3	4.9	not assigned.unknown	not assigned.unknown
MSGI1_64023	NODE_55487_length_197_cov_9.538071	6.2	40.8	22.2	4.3	2.7	-2.4	0	3.2	RNA.regulation of transcription.PHOR1	U-box domain-containing protein  similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G66160.1); similar to syringolide-induced protein 13-1-1 [Glycine max] (GB:BAB86896.1); contains InterPro domain Armadillo-like helical; (InterPro:
MSGI1_90808	NODE_5549_length_145_cov_19.703447	15.7	9.1	1.4	0.2	0	0	3.5	0	RNA.regulation of transcription.Aux/IAA family	"SHY2 (SHORT HYPOCOTYL 2); transcription factor SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro. Identical to Auxin-responsive protein IAA3 (Indolea"
MSGI1_90808	NODE_5549_length_145_cov_19.703447	15.7	9.1	1.4	0.2	0	0	3.5	0	hormone metabolism.auxin.induced-regulated-responsive-activated	"SHY2 (SHORT HYPOCOTYL 2); transcription factor SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro. Identical to Auxin-responsive protein IAA3 (Indolea"
MSGI1_75104	NODE_555_length_171_cov_27.684210	33.7	2	21	1.3	-4.1	-4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_61909	NODE_5551_length_203_cov_244.591125	176.9	44.3	15.4	55.2	-2	1.8	3.5	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase, putative  similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to LOX1 (Lipoxygenase 1), lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G55020.1); similar to lipoxygenase, putati"
MSGI1_36245	NODE_55537_length_318_cov_56.654087	33	33.5	7.7	28.1	0	1.9	2.1	0	glycolysis.glyceraldehyde 3-phosphate dehydrogenase	"GAPCP-1; glyceraldehyde-3-phosphate dehydrogenase  similar to GAPCP-2, glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G16300.1); similar to glyceraldehyde-3-phosphate dehydrogenase [Capsicum annuum] (GB:CAC80377.1); contains Int"
MSGI1_2754	NODE_55540_length_1379_cov_33.205219	27.6	0.4	9.8	0.3	-6.1	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_2754	NODE_55540_length_1379_cov_33.205219	27.6	0.4	9.8	0.3	-6.1	0	0	0	cell wall	"GDSL-motif lipase/hydrolase family protein  similar to ATLTL1/LTL1 (LI-TOLERANT LIPASE 1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT3G04290.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipo"
MSGI1_2754	NODE_55540_length_1379_cov_33.205219	27.6	0.4	9.8	0.3	-6.1	0	0	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to ATLTL1/LTL1 (LI-TOLERANT LIPASE 1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT3G04290.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipo"
MSGI1_32851	NODE_55546_length_343_cov_10.139941	28.3	2.9	1.2	1.9	-3.3	0	4.6	0	cell wall.degradation.pectate lyases and polygalacturonases	"PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2); protein binding polygalacturonase inhibiting protein 2 (PGIP2) mRNA, Identical to Polygalacturonase inhibitor 2 precursor (Polygalacturonase-inhibiting protein) (PGIP-2) (PGIP2) [Arabidopsis Thaliana] (GB:Q"
MSGI1_61562	NODE_5556_length_204_cov_22.656862	0.8	1.2	47.4	59	0	0	-5.9	-5.6	not assigned.unknown	not assigned.unknown
MSGI1_65488	NODE_5557_length_193_cov_16.176167	8.7	10.5	38.8	21.3	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_81046	NODE_55585_length_160_cov_25.549999	31.9	14.8	4.4	8.6	0	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_57151	NODE_55591_length_218_cov_13.990826	11.8	7.8	0	0	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_58687	NODE_5560_length_213_cov_385.690155	124.3	86.9	45.5	58.3	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_38044	NODE_55605_length_306_cov_12.258170	15.6	3.5	0.3	1.8	0	0	5.7	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"amidase family protein  similar to amidase family protein [Arabidopsis thaliana] (TAIR:AT5G07360.2); similar to amidase, putative [Brassica oleracea] (GB:ABD65012.1); contains InterPro domain Amidase; (InterPro:IPR000120)"
MSGI1_45772	NODE_5564_length_265_cov_110.535851	65.7	46.1	136.8	29.6	0	-2.2	-1.1	0	lipid metabolism.lipid degradation.lysophospholipases.phosphoinositide phospholipase C	"ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phosp"
MSGI1_45772	NODE_5564_length_265_cov_110.535851	65.7	46.1	136.8	29.6	0	-2.2	-1.1	0	signalling.phosphinositides.phosphoinositide phospholipase C	"ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phosp"
MSGI1_93776	NODE_5565_length_141_cov_9.439716	7	1.1	5.1	14.6	0	0	0	-3.7	protein.degradation.subtilases	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1); similar to Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE93526.1); contains InterPro domain Pro"
MSGI1_76116	NODE_55652_length_169_cov_48.650887	34.7	0.3	0.2	0	-6.9	0	7.4	0	stress.biotic	trypsin and protease inhibitor family protein / Kunitz family protein  similar to trypsin and protease inhibitor family protein / Kunitz family protein [Arabidopsis thaliana] (TAIR:AT1G73260.1); similar to Lemir [Lycopersicon esculentum] (GB:AAC63057.1);
MSGI1_120165	NODE_55653_length_61_cov_25.704918	9.3	6.8	63.4	18.1	0	-1.8	-2.8	0	cell wall.degradation.pectate lyases and polygalacturonases	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT4G23500.1); similar to Glycoside hydrolas
MSGI1_110493	NODE_5566_length_122_cov_7.688525	0.4	0.1	15.4	10.4	0	0	-5.3	-6.7	not assigned.unknown	not assigned.unknown
MSGI1_73225	NODE_55697_length_175_cov_28.742857	17.3	25.3	39.6	71.5	0	0	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_117824	NODE_55704_length_64_cov_34.078125	20.4	1.8	6.2	2.4	-3.5	0	0	0	lipid metabolism.Phospholipid synthesis	ATGPAT6/GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase Encodes a protein with glycerol-3-phosphate acyltransferase activity. Identical to Glycerol-3-phosphate acyltransferase 6 (EC 2.3.1.15)
MSGI1_114658	NODE_55748_length_91_cov_18.692308	14.5	0.9	4.2	1	-4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_90804	NODE_55766_length_145_cov_12.248276	13.3	17.6	0	0	0	0	4.7	5.1	not assigned.unknown	not assigned.unknown
MSGI1_20828	NODE_55793_length_487_cov_20.055441	18.5	10	3.6	8.5	0	0	2.4	0	protein.synthesis.initiation	"eukaryotic translation initiation factor, putative (EIF4B5)  similar to EIF4B1 (eukaryotic translation initiation factor 4B1) [Arabidopsis thaliana] (TAIR:AT3G26400.1); similar to eukaryotic translation initiation factor 4B [Triticum aestivum] (GB:AAC282"
MSGI1_47422	NODE_55809_length_257_cov_6.116732	4.1	29.5	33.8	2.7	2.8	-3.6	-3	3.4	RNA.regulation of transcription.C2H2 zinc finger family	"zinc finger (C2H2 type) family protein (ZAT11)  similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT3G53600.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE93962.1); contains InterPro domain Zinc finger, C2"
MSGI1_87377	NODE_55817_length_150_cov_11.866667	10.2	19.3	1.2	1	0	0	0	4.3	"lipid metabolism.'exotics' (steroids, squalene etc).sphingolipids"	"acid phosphatase, putative  similar to acid phosphatase, putative [Arabidopsis thaliana] (TAIR:AT1G69640.1); similar to Sterol desaturase family protein [Solanum demissum] (GB:AAU93587.1); contains InterPro domain SUR2-type hydroxylase/desaturase, cataly"
MSGI1_56074	NODE_55836_length_222_cov_30.297297	26.7	21.3	1.9	3.4	0	0	3.8	2.6	not assigned.unknown	not assigned.unknown
MSGI1_81045	NODE_55850_length_160_cov_6.262500	4.6	13.3	26.8	22.9	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_61908	NODE_55861_length_203_cov_6.517241	4.1	6.5	18.6	2.3	0	-3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_88715	NODE_5587_length_148_cov_54.378380	28.9	102.8	41.2	20.2	1.8	0	0	2.3	not assigned.unknown	not assigned.unknown
MSGI1_41758	NODE_55876_length_285_cov_13.487720	13.6	19.2	0	0.1	0	0	4.8	7.6	not assigned.unknown	not assigned.unknown
MSGI1_117823	NODE_55878_length_64_cov_20.687500	13.8	11.8	0	0	0	0	4.8	4.6	not assigned.unknown	not assigned.unknown
MSGI1_52329	NODE_55901_length_236_cov_10.233051	10.2	0.3	4.6	0	-5.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_101012	NODE_5594_length_132_cov_12.257576	44	27.9	13.3	42.9	0	1.7	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_96864	NODE_5595_length_137_cov_5.970803	0	0	8.3	11.7	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_74612	NODE_55965_length_172_cov_5.854651	4.3	9.7	23.4	8.2	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_51033	NODE_55974_length_241_cov_8.136930	6.4	5.2	338.5	2.5	0	-7.1	-5.7	0	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase	"NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE3) Encodes  9-<i>cis</i>-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chl"
MSGI1_50868	NODE_55984_length_242_cov_57.561985	32.5	9.9	9	8.7	-1.7	0	1.9	0	cell wall	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41800.1); similar to Os03g0807700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051644.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); contains InterPro domain Galactose-binding l
MSGI1_91529	NODE_55987_length_144_cov_6.187500	4.8	9.8	23	5.6	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_78198	NODE_55990_length_165_cov_11.654546	5.8	25.2	15.3	14.7	2.1	0	0	0	cell wall	"AtMYB15/AtY19/MYB15 (myb domain protein 15); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to AtMYB14/Myb14at (myb domain protein 14), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G31180.1); simil"
MSGI1_78198	NODE_55990_length_165_cov_11.654546	5.8	25.2	15.3	14.7	2.1	0	0	0	RNA.regulation of transcription.MYB domain transcription factor family	"AtMYB15/AtY19/MYB15 (myb domain protein 15); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to AtMYB14/Myb14at (myb domain protein 14), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G31180.1); simil"
MSGI1_45570	NODE_55997_length_266_cov_4.883459	82.2	3.5	18.7	4.1	-4.6	0	2.1	0	lipid metabolism.FA synthesis and FA elongation.acyl coa ligase	acyl-activating enzyme 12 (AAE12)  similar to acyl-activating enzyme 11 (AAE11) [Arabidopsis thaliana] (TAIR:AT1G66120.1); similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT1G68270.1); similar to AMP-dependent s
MSGI1_65487	NODE_56000_length_193_cov_7.331606	3.9	16.6	30.4	8.5	0	-1.8	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_62967	NODE_56010_length_200_cov_3.665000	2.6	11.6	4.6	21.1	0	2.2	0	0	cell wall.degradation.pectate lyases and polygalacturonases	pectate lyase family protein  Identical to Probable pectate lyase 18 precursor (EC 4.2.2.2) (Pectate lyase A10) [Arabidopsis Thaliana] (GB:Q9C5M8;GB:O23667;GB:Q8LAW7;GB:Q9SB71); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT1G677
MSGI1_45087	NODE_56016_length_268_cov_8.630597	11.5	4.6	0	0.2	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_21968	NODE_5602_length_470_cov_42.274467	30.9	9.5	16.4	15.7	-1.7	0	0	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative  Identical to Plastid-specific 30S ribosomal protein 3-1, chloroplast precursor (PSRP-3 1) [Arabidopsis Thaliana] (GB:Q9SX22;GB:Q8LD87); similar to plastid-specific 30S ribosomal prote"
MSGI1_92987	NODE_56030_length_142_cov_21.316902	20.9	13.8	0	0	0	0	5.4	4.8	not assigned.unknown	not assigned.unknown
MSGI1_100079	NODE_56052_length_133_cov_16.413534	17.2	9.9	2.3	4.4	0	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_89405	NODE_56055_length_147_cov_7.761905	12.5	16.2	0.9	2.7	0	0	3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_40635	NODE_5607_length_291_cov_82.728523	37.4	33.9	66.8	79.5	0	0	0	-1.2	redox.thioredoxin	"ATCDSP32/CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD); thiol-disulfide exchange intermediate  similar to ATTRX4 (thioredoxin H-type 4), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G19730.1); similar to CDSP32 p"
MSGI1_28288	NODE_56071_length_387_cov_15.116279	13.8	36.8	7.5	13.3	1.4	0	0	1.5	PS.calvin cyle.Rib5P Isomerase	RSW10 (RADIAL SWELLING 10); ribose-5-phosphate isomerase Encodes a ribose 5-phosphate isomerase involved in the formation of uridine used for the synthesis of UDP-sugars. Mutants of this gene are affected in cellulose biosynthesis. similar to ribose-5-pho
MSGI1_28288	NODE_56071_length_387_cov_15.116279	13.8	36.8	7.5	13.3	1.4	0	0	1.5	OPP.non-reductive PP.ribose 5-phosphate isomerase	RSW10 (RADIAL SWELLING 10); ribose-5-phosphate isomerase Encodes a ribose 5-phosphate isomerase involved in the formation of uridine used for the synthesis of UDP-sugars. Mutants of this gene are affected in cellulose biosynthesis. similar to ribose-5-pho
MSGI1_112126	NODE_56074_length_112_cov_33.723213	2.4	16.5	4.8	9.3	2.8	0	0	0	transport.nucleotides	"PUP1 (PURINE PERMEASE 1); purine transporter Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation. similar to ATPUP2"
MSGI1_114236	NODE_56079_length_95_cov_32.978947	9.2	16.8	24.4	6.1	0	-2	0	0	RNA.regulation of transcription.unclassified	"ATEXO70B1 (exocyst subunit EXO70 family protein B1); protein binding A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on"
MSGI1_20525	NODE_5610_length_493_cov_267.498993	187.5	19	59.9	49.4	-3.3	0	1.6	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_120148	NODE_56109_length_61_cov_12.754098	21.3	6.5	0.4	0	0	0	5.7	0	PS.lightreaction.photosystem I.PSI polypeptide subunits	"TMP14 (THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA) Encodes the P subunit of Photosystem I. About 25% of the TMP14 pool appeared to be phosphorylated, and this ratio is not affected by light. Contains seven phosphorylation sites on threonine residue and"
MSGI1_107454	NODE_5611_length_125_cov_112.935997	43.8	13.3	14.4	9.2	-1.7	0	1.6	0	RNA.regulation of transcription.unclassified	similar to SGR5 (SHOOT GRAVITROPISM 5) [Arabidopsis thaliana] (TAIR:AT2G01940.3); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD23182.1)
MSGI1_31708	NODE_56116_length_353_cov_15.456091	10.4	25.4	10.1	33.2	0	1.7	0	0	misc.cytochrome P450	"CYP94C1 (cytochrome P450, family 94, subfamily C, polypeptide 1); oxygen binding member of CYP94C similar to CYP94B3 (cytochrome P450, family 94, subfamily B, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G48520.1); similar to cytochrome"
MSGI1_91528	NODE_56122_length_144_cov_34.402779	26.8	39.3	69.5	47.5	0	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_92986	NODE_5613_length_142_cov_82.056335	48.8	37.5	30.4	8.6	0	-1.8	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_45771	NODE_56130_length_265_cov_9.615094	12.8	0.3	3.6	2.6	-5.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_100078	NODE_56136_length_133_cov_30.736841	45.3	13.3	14	6.7	-1.8	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_79903	NODE_5614_length_162_cov_7.746913	1.9	5.6	16.4	1.1	0	-3.9	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_112764	NODE_56197_length_107_cov_16.831776	10.2	10.6	39.2	15	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_5413	NODE_5621_length_1018_cov_66.358543	92.9	41.6	5.5	14.3	-1.2	0	4.1	1.5	not assigned.unknown	not assigned.unknown
MSGI1_72774	NODE_5621_length_176_cov_18.494318	0	0	4.5	42.2	0	3.2	0	-6.4	not assigned.unknown	not assigned.unknown
MSGI1_96860	NODE_56210_length_137_cov_6.744525	6.7	9.6	46.6	16.7	0	-1.5	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_111066	NODE_56212_length_121_cov_13.859504	3.7	5.8	30.4	14.6	0	0	-3	0	transport.peptides and oligopeptides	proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G54140.1); similar to Os06g0264500 [Oryza sativa (japonica cultivar-group)] (GB:NP_00105
MSGI1_111554	NODE_56238_length_117_cov_38.239315	34.1	72.4	17	28	1.1	0	0	1.4	cell.organisation	"similar to ATMAP65-6, microtubule binding [Arabidopsis thaliana] (TAIR:AT2G01910.1); similar to putative microtubule-associated protein MAP65-1a [Oryza sativa (japonica cultivar-group)] (GB:BAD37971.1); contains InterPro domain MAP65/ASE1; (InterPro:IP"
MSGI1_116683	NODE_5626_length_73_cov_31.534246	30.6	27.7	2.2	1.5	0	0	3.8	4.2	OPP.oxidative PP.6-phosphogluconolactonase	glucosamine/galactosamine-6-phosphate isomerase-related  similar to glucosamine/galactosamine-6-phosphate isomerase family protein [Arabidopsis thaliana] (TAIR:AT3G49360.1); similar to putative 6-phosphogluconolactonase [Brassica carinata] (GB:AAK50346.1)
MSGI1_71837	NODE_56273_length_178_cov_12.325843	12.9	44.1	3.3	2.3	1.8	0	0	4.3	RNA.regulation of transcription.unclassified	"ATMBF1C/MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator.  May serve as a brid"
MSGI1_71837	NODE_56273_length_178_cov_12.325843	12.9	44.1	3.3	2.3	1.8	0	0	4.3	hormone metabolism.ethylene.induced-regulated-responsive-activated	"ATMBF1C/MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator.  May serve as a brid"
MSGI1_115279	NODE_56278_length_85_cov_15.035295	16.1	1.8	6	4.5	-3.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_65485	NODE_56295_length_193_cov_16.715027	13.4	21.1	1.1	3.5	0	0	3.6	2.6	not assigned.unknown	not assigned.unknown
MSGI1_101850	NODE_56303_length_131_cov_6.213740	10.1	16.4	0.8	0.5	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_120132	NODE_56323_length_61_cov_14.918033	11.7	45.7	16	39.5	2	1.3	0	0	protein.postranslational modification	"CIPK12 (CIPK12); kinase Encodes CBL-interacting protein kinase 12 (CIPK12). similar to CIPK19 (CIPK19), kinase [Arabidopsis thaliana] (TAIR:AT5G45810.1); similar to CIPK13 (CIPK13), kinase [Arabidopsis thaliana] (TAIR:AT2G34180.1); similar to CIPK18 (CIP"
MSGI1_45975	NODE_56324_length_264_cov_23.511364	8.4	18.5	0	0.6	0	0	0	4.9	transport.unspecified cations	organic cation transporter-related  similar to transporter-related [Arabidopsis thaliana] (TAIR:AT1G79360.1); similar to putative organic cation transporter [Oryza sativa (japonica cultivar-group)] (GB:BAC83382.1); contains InterPro domain Major facilitat
MSGI1_50389	NODE_5634_length_244_cov_35.372952	18.6	14.7	46.4	15.9	0	-1.5	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_83473	NODE_56361_length_156_cov_4.378205	7.6	1.1	16.1	0.7	0	-4.5	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	"auxin-responsive protein, putative  similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G21210.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12778.1); contains InterPro domain Auxin responsive SAUR prot"
MSGI1_120130	NODE_56363_length_61_cov_32.491802	1.9	8.5	31.9	25.1	0	0	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_23999	NODE_56374_length_440_cov_14.515909	10.1	16.9	39	13.4	0	-1.5	-1.9	0	transport.ABC transporters and multidrug resistance systems	"PGP4 (P-GLYCOPROTEIN 4, P-GLYCOPROTEIN4); ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase Multidrug resistance  P-glycoprotein (MDR/PGP) subfamily of ABC transporters. Functions in the basipetal  redirection of au"
MSGI1_102761	NODE_5638_length_130_cov_76.953850	63.1	58.8	15.8	33.1	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_120122	NODE_56426_length_61_cov_9.491803	29.3	6.7	4.4	1.2	-2.1	0	2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_96085	NODE_56465_length_138_cov_9.681159	9.6	10.9	37.1	10.8	0	-1.8	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_44852	NODE_56479_length_269_cov_16.044609	14.8	22.1	16.3	2.7	0	0	0	3	stress.biotic	leucine-rich repeat family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT5G27060.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT2G15080.2); similar to disease resistance family prote
MSGI1_118131	NODE_5648_length_62_cov_43.580647	34.2	27.8	1.2	8.6	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_48550	NODE_56484_length_252_cov_48.353176	2.2	19.5	31.4	17.6	3.1	0	-3.8	0	cell wall.degradation	peptidoglycan-binding LysM domain-containing protein  similar to peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G25433.1); similar to Os10g0524300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065106.1); similar
MSGI1_100073	NODE_56493_length_133_cov_6.368421	8.2	1.4	7.3	15.8	0	0	0	-3.5	not assigned.unknown	not assigned.unknown
MSGI1_23998	NODE_5651_length_440_cov_34.131817	44.7	47.6	0.5	0.1	0	0	6.5	8.9	cell wall	"disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT1G47890.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE79507.1); contains Inter"
MSGI1_23998	NODE_5651_length_440_cov_34.131817	44.7	47.6	0.5	0.1	0	0	6.5	8.9	stress.biotic	"disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT1G47890.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE79507.1); contains Inter"
MSGI1_71835	NODE_56523_length_178_cov_11.696630	14.1	12.2	43.2	59.7	0	0	-1.6	-2.3	not assigned.unknown	not assigned.unknown
MSGI1_66644	NODE_56595_length_190_cov_8.805264	43.3	5.1	88.7	24.3	-3.1	-1.9	0	-2.3	not assigned.unknown	not assigned.unknown
MSGI1_4588	NODE_5661_length_1102_cov_39.674229	23	24.9	46.1	14.2	0	-1.7	0	0	cell wall.precursor synthesis.UGE	UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1); UDP-glucose 4-epimerase/ protein dimerization Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate.
MSGI1_94537	NODE_56644_length_140_cov_10.792857	8	13.5	37.7	9.7	0	-2	-2.2	0	secondary metabolism.flavonoids.flavonols	"SRG1 (SENESCENCE-RELATED GENE 1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors Encodes a novel member of the Fe(II"
MSGI1_4057	NODE_5669_length_1164_cov_12.694158	12.7	15.3	34.8	68.2	0	1	0	-2.2	cell wall	"SCPL31 (serine carboxypeptidase-like 31); serine carboxypeptidase  similar to SCPL30 (serine carboxypeptidase-like 30), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT4G15100.1); similar to serine carboxypeptidase S10 family protein [Arabidopsis"
MSGI1_4057	NODE_5669_length_1164_cov_12.694158	12.7	15.3	34.8	68.2	0	1	0	-2.2	protein.degradation.serine protease	"SCPL31 (serine carboxypeptidase-like 31); serine carboxypeptidase  similar to SCPL30 (serine carboxypeptidase-like 30), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT4G15100.1); similar to serine carboxypeptidase S10 family protein [Arabidopsis"
MSGI1_8181	NODE_567_length_848_cov_215.911560	91	38	32.3	34.2	-1.3	0	1.5	0	cell wall	"TUB6 (BETA-6 TUBULIN) Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment. Identical to Tubulin beta-6 chain (Beta-6 tubulin) (TUBB6) [Arabidopsis Thaliana] (GB:P29514); similar to TUB3 (Tubulin beta-3), st"
MSGI1_8181	NODE_567_length_848_cov_215.911560	91	38	32.3	34.2	-1.3	0	1.5	0	cell.organisation	"TUB6 (BETA-6 TUBULIN) Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment. Identical to Tubulin beta-6 chain (Beta-6 tubulin) (TUBB6) [Arabidopsis Thaliana] (GB:P29514); similar to TUB3 (Tubulin beta-3), st"
MSGI1_101003	NODE_56721_length_132_cov_16.818182	5.8	16.4	32.2	7.3	0	-2.1	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_32521	NODE_56736_length_346_cov_10.852601	10.2	13.6	0.7	0.6	0	0	0	4.5	mitochondrial electron transport / ATP synthesis.alternative oxidase	"AOX1A (alternative oxidase 1A); alternative oxidase Encodes an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without e"
MSGI1_120110	NODE_56748_length_61_cov_98.000000	6	25.5	24.3	20.6	2.1	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_90796	NODE_5677_length_145_cov_78.868965	31.8	17.1	43.9	47.7	0	0	0	-1.5	amino acid metabolism.synthesis.serine-glycine-cysteine group.glycine.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_90796	NODE_5677_length_145_cov_78.868965	31.8	17.1	43.9	47.7	0	0	0	-1.5	PS.photorespiration.serine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_90796	NODE_5677_length_145_cov_78.868965	31.8	17.1	43.9	47.7	0	0	0	-1.5	C1-metabolism.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_12368	NODE_5679_length_678_cov_60.352509	34.5	23	9.2	18	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_112500	NODE_5681_length_109_cov_24.155964	20.9	16.9	3.4	15.4	0	0	2.6	0	cell wall	glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G18070.1); similar to beta-mannosidase enzyme [Lycopersicon esculentum] (GB:AAL37714.1); similar to beta-mannosidase 3 [Oncidium Gower Ram
MSGI1_112500	NODE_5681_length_109_cov_24.155964	20.9	16.9	3.4	15.4	0	0	2.6	0	"misc.gluco-, galacto- and mannosidases"	glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G18070.1); similar to beta-mannosidase enzyme [Lycopersicon esculentum] (GB:AAL37714.1); similar to beta-mannosidase 3 [Oncidium Gower Ram
MSGI1_112270	NODE_5693_length_111_cov_49.171169	38.6	0.3	10.8	0.6	-7	0	1.8	0	RNA.regulation of transcription.putative transcription regulator	"pepsin A  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G54400.1); similar to Peptidase A1, pepsin [Medicago truncatula] (GB:ABE83791.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro"
MSGI1_16708	NODE_5694_length_563_cov_57.673180	77.7	4.8	14	17	-4	0	2.5	0	secondary metabolism.N misc.alkaloid-like	"FAD-binding domain-containing protein  Identical to Reticuline oxidase-like protein precursor (EC 1.21.-.-) [Arabidopsis Thaliana] (GB:Q9SVG4;GB:Q3E9Y2;GB:Q8H7B5); similar to ATSEC1A, electron carrier [Arabidopsis thaliana] (TAIR:AT1G01980.1); similar to"
MSGI1_16708	NODE_5694_length_563_cov_57.673180	77.7	4.8	14	17	-4	0	2.5	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"FAD-binding domain-containing protein  Identical to Reticuline oxidase-like protein precursor (EC 1.21.-.-) [Arabidopsis Thaliana] (GB:Q9SVG4;GB:Q3E9Y2;GB:Q8H7B5); similar to ATSEC1A, electron carrier [Arabidopsis thaliana] (TAIR:AT1G01980.1); similar to"
MSGI1_50865	NODE_56945_length_242_cov_5.252066	2	3.8	0.6	12.7	0	4.4	0	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	RAP2.6L (related to AP2 6L); DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. simil
MSGI1_12695	NODE_5696_length_667_cov_40.542728	42.4	26	0.1	0.1	0	0	8.7	8	not assigned.unknown	not assigned.unknown
MSGI1_76106	NODE_56961_length_169_cov_5.721893	6.4	10.3	34.7	13.5	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_65483	NODE_56969_length_193_cov_17.865286	13.6	8.9	1.3	4.5	0	0	3.4	0	cell wall	"33 kDa secretory protein-related  similar to 33 kDa secretory protein-related [Arabidopsis thaliana] (TAIR:AT2G33330.1); similar to Domain of unknown function, putative [Medicago truncatula] (GB:ABE87977.1); contains InterPro domain Protein of unknown fu"
MSGI1_67064	NODE_5698_length_189_cov_28.296297	28.6	8.2	33.6	11.4	-1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_120101	NODE_56983_length_61_cov_22.393442	9.7	14.2	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_116280	NODE_56991_length_76_cov_16.381578	7.3	10.9	0	0	0	0	0	4.4	signalling.receptor kinases.leucine rich repeat VIII-1	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G49780.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsi"
MSGI1_99275	NODE_56997_length_134_cov_5.440299	27.2	7.5	13	3.9	-1.9	0	0	0	stress.abiotic.cold	"RCI3 (RARE COLD INDUCIBLE GENE 3); peroxidase Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but onl"
MSGI1_60223	NODE_5700_length_208_cov_147.100967	39	18.5	44.6	50.3	0	0	0	-1.4	PS.calvin cyle.seduheptulose bisphosphatase	"SBPASE (sedoheptulose-bisphosphatase); phosphoric ester hydrolase Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate u"
MSGI1_120098	NODE_57072_length_61_cov_9.180327	3.2	4.9	240.5	9.1	0	-4.7	-6.2	0	"metal handling.binding, chelation and storage"	"ATFER1 (ferretin 1); ferric iron binding Encodes  a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Identical to Ferritin-1, chloroplast"
MSGI1_56344	NODE_57092_length_221_cov_8.384615	2.9	13.5	25.1	6.9	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_69589	NODE_5713_length_183_cov_106.868851	33.5	36.8	50.9	105.4	0	1.1	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_41350	NODE_57142_length_287_cov_7.825784	2.9	5	22.4	4.7	0	-2.3	-2.9	0	development.unspecified	"ACD1 (ACCELERATED CELL DEATH 1, PHEOPHORBIDE A OXYGENASE) Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato"
MSGI1_60221	NODE_5715_length_208_cov_40.706730	0	0.2	66.6	48.6	0	0	-7.1	-7.9	not assigned.unknown	not assigned.unknown
MSGI1_61192	NODE_57150_length_205_cov_16.751219	3.8	20.8	2.9	3	2.5	0	0	2.8	not assigned.unknown	not assigned.unknown
MSGI1_83467	NODE_57156_length_156_cov_17.435898	1.5	19.4	2.7	2.3	3.7	0	0	3.1	not assigned.unknown	not assigned.unknown
MSGI1_17881	NODE_5719_length_540_cov_7.246296	10.2	14.2	29.4	8.7	0	-1.8	0	0	minor CHO metabolism.galactose.galactokinases	"ARA1 (ARABINOSE SENSITIVE 1); ATP binding / galactokinase Similar to galactokinase. similar to galactokinase, putative [Arabidopsis thaliana] (TAIR:AT3G42850.1); similar to Os06g0702500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058491.1); simila"
MSGI1_59000	NODE_57197_length_212_cov_6.325472	4.7	7.5	19.7	2.6	0	-2.9	0	0	hormone metabolism.abscisic acid.synthesis-degradation.degradation. 8-hydroxylase	"CYP707A1 (cytochrome P450, family 707, subfamily A, polypeptide 1); oxygen binding Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. CYP707A1 appears to play an important role in determinin"
MSGI1_79296	NODE_57200_length_163_cov_21.963190	28.1	13	6.1	5.6	0	0	2.2	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_79296	NODE_57200_length_163_cov_21.963190	28.1	13	6.1	5.6	0	0	2.2	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_31943	NODE_5723_length_351_cov_16.096867	20	25.8	54.8	16	0	-1.8	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_6186	NODE_5724_length_960_cov_24.482292	23.4	0.2	11.7	0	-6.9	-4.5	0	0	cell wall.pectin*esterases.misc	pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT2G45220.1); similar to putative pectin methylesterase [Populus tremula x Populus tremuloides] (GB:CAC01624.1); similar to Os01g0312500 [Oryza sativa (j
MSGI1_26316	NODE_5726_length_410_cov_20.248781	25.1	13	7.1	10.4	0	0	1.8	0	stress.biotic	similar to disease resistance-responsive family protein [Arabidopsis thaliana] (TAIR:AT5G42500.1); similar to dirigent-like protein pDIR12 [Picea glauca] (GB:ABD52123.1); contains InterPro domain Plant disease resistance response protein; (InterPro:IPR004
MSGI1_111937	NODE_57270_length_114_cov_25.140350	0	23.6	8.1	124.9	5.6	3.9	0	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_29582	NODE_5730_length_373_cov_9.756032	7.5	20.3	33.9	30	0	0	-2.2	0	stress.biotic	"ADR1-L1 (ADR1-LIKE 1); ATP binding / protein binding  Identical to Probable disease resistance protein At4g33300 [Arabidopsis Thaliana] (GB:Q9SZA7;GB:Q56WJ3); similar to ADR1-L2 (ADR1-LIKE 2), ATP binding / nucleoside-triphosphatase/ nucleotide binding /"
MSGI1_28580	NODE_57318_length_384_cov_8.500000	1.9	5	18.4	8.4	0	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_116279	NODE_57333_length_76_cov_10.526316	3.8	16.2	29.2	2.9	0	-3.3	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_79294	NODE_57360_length_163_cov_14.030675	3.2	8.9	21.1	13.2	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_116528	NODE_57394_length_74_cov_21.324324	1.5	5.7	19.5	10.8	0	0	-3.7	0	protein.degradation.ubiquitin.E3.SCF.FBOX	"ATPP2-B10 (Phloem protein 2-B10)  similar to ATPP2-B8 (Phloem protein 2-B8) [Arabidopsis thaliana] (TAIR:AT2G02340.1); similar to F-box domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96399.2); contains InterPro domai"
MSGI1_42129	NODE_5742_length_283_cov_26.798586	27.3	49.2	162.4	71.5	0	-1.2	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_26901	NODE_5747_length_403_cov_57.476425	24.4	11.4	6.5	12.1	0	0	1.9	0	RNA.regulation of transcription.TCP transcription factor family	"TCP family transcription factor, putative  similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT5G08330.1); similar to unknown [Brassica rapa] (GB:ABB97033.1); contains InterPro domain TCP transcription factor; (InterPro:IP"
MSGI1_46221	NODE_5749_length_263_cov_15.479088	5.8	1.7	20.2	1.9	0	-3.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_72771	NODE_57490_length_176_cov_6.187500	2.9	7.2	47.8	9.1	0	-2.4	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_27470	NODE_57500_length_396_cov_16.598484	99.3	17.9	13.4	17.7	-2.5	0	2.9	0	cell wall.modification	"ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3) putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thal"
MSGI1_58999	NODE_57508_length_212_cov_10.622642	0.5	17	2.5	0.2	5.1	0	0	6.4	not assigned.unknown	not assigned.unknown
MSGI1_116682	NODE_57529_length_73_cov_22.136986	8.8	12.8	46.5	28.9	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_49913	NODE_57535_length_246_cov_12.012196	14.3	17.3	1.9	2.1	0	0	0	3	DNA.synthesis/chromatin structure	LOS4 (Low expression of osmotically responsive genes 1); ATP-dependent helicase Encodes a putative DEAD-Box RNA Helicase and has RNA-dependent ATPase activity. Mutant is Sensitive to chilling stress and heat stress. Germination of the mutant is inhibited
MSGI1_80483	NODE_5754_length_161_cov_6.869565	1.7	2.2	13.4	0.5	0	-4.7	0	0	stress.abiotic.drought/salt	similar to HYP1 (HYPOTHETICAL PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G01100.1); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os12g0582800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067142.1);
MSGI1_11054	NODE_5757_length_721_cov_17.160887	14.7	52.5	55.8	39.7	1.8	0	-1.9	0	metal handling.acquisition	"ATFRO7/FRO7 (FERRIC REDUCTION OXIDASE 7); ferric-chelate reductase/ oxidoreductase Encodes a ferric chelate reductase.  Shows differential splicing and has three different mRNA products.  Expressed in the shoot, flower and cotyledon. similar to ATFRO6/FR"
MSGI1_3492	NODE_5759_length_1246_cov_56.161316	38.4	53.9	34.2	105.8	0	1.6	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_3492	NODE_5759_length_1246_cov_56.161316	38.4	53.9	34.2	105.8	0	1.6	0	0	cell wall	NIP6;1 (NOD26-like intrinsic protein 6;1); water channel Similar to gb:D17443 major intrinsic protein from Oryza sativa Identical to Aquaporin NIP6.1 (NOD26-like intrinsic protein 6.1) (NIP6.1) [Arabidopsis Thaliana] (GB:Q9SAI4;GB:Q5PP68); similar to NIP
MSGI1_3492	NODE_5759_length_1246_cov_56.161316	38.4	53.9	34.2	105.8	0	1.6	0	0	transport.Major Intrinsic Proteins.NIP	NIP6;1 (NOD26-like intrinsic protein 6;1); water channel Similar to gb:D17443 major intrinsic protein from Oryza sativa Identical to Aquaporin NIP6.1 (NOD26-like intrinsic protein 6.1) (NIP6.1) [Arabidopsis Thaliana] (GB:Q9SAI4;GB:Q5PP68); similar to NIP
MSGI1_85368	NODE_57613_length_153_cov_7.581699	8.5	0.8	3.4	12.2	0	0	0	-3.9	not assigned.unknown	not assigned.unknown
MSGI1_105507	NODE_57617_length_127_cov_14.377953	61.7	35.5	22.7	11.7	0	0	1.4	1.6	cell wall	"peroxidase, putative  Identical to Peroxidase 67 precursor (EC 1.11.1.7) (Atperox P67) (ATP44) (PER67) [Arabidopsis Thaliana] (GB:Q9LVL2); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to peroxidase precursor [Quercus"
MSGI1_105507	NODE_57617_length_127_cov_14.377953	61.7	35.5	22.7	11.7	0	0	1.4	1.6	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 67 precursor (EC 1.11.1.7) (Atperox P67) (ATP44) (PER67) [Arabidopsis Thaliana] (GB:Q9LVL2); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to peroxidase precursor [Quercus"
MSGI1_112763	NODE_57628_length_107_cov_16.364487	14	16.5	0	0	0	0	4.8	5	not assigned.unknown	not assigned.unknown
MSGI1_58039	NODE_5763_length_215_cov_368.944183	2.8	0.6	711.2	3.8	0	-7.5	-8	0	not assigned.unknown	not assigned.unknown
MSGI1_11126	NODE_57648_length_719_cov_7.319889	10.7	17.8	0.2	0.4	0	0	5.7	5.5	not assigned.unknown	not assigned.unknown
MSGI1_52875	NODE_57686_length_234_cov_7.529914	15.1	1.6	2.8	1	-3.2	0	0	0	"misc.oxidases - copper, flavone etc."	flavin-containing monooxygenase family protein / FMO family protein  similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT5G61290.1); similar to putative flavin-containing monooxygenase FMO-1 [Oryz
MSGI1_109470	NODE_57697_length_123_cov_13.788618	286.5	13.1	50.9	9	-4.5	-2.5	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_112762	NODE_577_length_107_cov_43.345795	32	50	35.1	18.9	0	0	0	1.4	not assigned.unknown	not assigned.unknown
MSGI1_113133	NODE_5771_length_104_cov_101.653847	53.9	109.6	84.5	98.3	1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_86002	NODE_5771_length_152_cov_122.453949	133.8	79.4	34.7	54.2	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_88709	NODE_57712_length_148_cov_2.331081	1.5	0.8	140.7	2.9	0	-5.6	-6.6	0	amino acid metabolism.degradation.branched-chain group.shared	"2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative  similar to 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogen"
MSGI1_44476	NODE_57717_length_271_cov_15.221402	22.5	12.3	4.7	4.7	0	0	2.3	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"glycosyl hydrolase family 3 protein  similar to BXL1 (BETA-XYLOSIDASE 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G49360.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G10560.1); sim"
MSGI1_100064	NODE_5772_length_133_cov_145.443604	12.8	4.9	215	15.2	0	-3.8	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_49637	NODE_5773_length_247_cov_7.797571	6.4	2.3	17.5	2.1	0	-3.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_89393	NODE_57741_length_147_cov_9.061225	20.8	33.3	2.3	7	0	0	3.2	2.3	misc.GDSL-motif lipase	GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G26430.1); similar to Os07g0586200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060129.1); similar to hypothetical pro
MSGI1_89393	NODE_57741_length_147_cov_9.061225	20.8	33.3	2.3	7	0	0	3.2	2.3	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_116278	NODE_57776_length_76_cov_23.210526	15	8.8	0.4	0	0	0	5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_95282	NODE_5778_length_139_cov_255.928055	122.2	137.6	0.2	1	0	0	9.3	7.1	cell wall	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_95282	NODE_5778_length_139_cov_255.928055	122.2	137.6	0.2	1	0	0	9.3	7.1	protein.degradation.subtilases	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_47658	NODE_5779_length_256_cov_27.214844	5.7	8.6	56.9	7.7	0	-2.9	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_56865	NODE_578_length_219_cov_49.538815	123.4	30.2	16	50.1	-2	1.6	2.9	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_51320	NODE_57804_length_240_cov_3.783333	4.5	1.5	16.3	1.2	0	-3.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_20187	NODE_57817_length_500_cov_90.382004	163.8	55.3	78.6	67.9	-1.6	0	1.1	0	PS.photorespiration.glycine cleavage	"glycine cleavage system H protein, mitochondrial, putative  Identical to Probable glycine cleavage system H protein 2, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q9LQL0); similar to GDCH (Glycine decarboxylase complex H) [Arabidopsis thaliana] (T"
MSGI1_89391	NODE_57821_length_147_cov_11.312925	12.6	11.7	0.9	2.7	0	0	3.8	0	transport.metabolite transporters at the mitochondrial membrane	BOU (A BOUT DE SOUFFLE); binding Seedling lethal mutation; Mitochondrial Carnitine Acyl Carrier-Like Protein Identical to Mitochondrial carnitine/acylcarnitine carrier-like protein (Protein A BOUT DE SOUFFLE) (Carnitine/acylcarnitine translocase-like prot
MSGI1_32995	NODE_5783_length_342_cov_6.508772	5.9	7.8	11.3	26.6	0	0	0	-1.8	hormone metabolism.auxin.induced-regulated-responsive-activated	ATB2; oxidoreductase Encodes ATB2. similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:AT1G60690.1); similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:AT1G60730.1); similar to aldo/keto reductase AKR [Maniho
MSGI1_111435	NODE_57849_length_118_cov_24.296610	11.1	12.8	0.3	0	0	0	5.2	4.7	transport.unspecified anions	BOR1 (REQUIRES HIGH BORON 1); anion exchanger Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitat
MSGI1_26808	NODE_57858_length_404_cov_5.933168	9.9	11.4	39.7	4.4	0	-3.2	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_82847	NODE_57860_length_157_cov_8.082803	4.3	9.6	22.5	8.5	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_78715	NODE_57865_length_164_cov_10.542683	12	4.9	0.9	1.1	0	0	3.7	0	cell wall	"peroxidase, putative  Identical to Peroxidase 52 precursor (EC 1.11.1.7) (Atperox P52) (ATP49) (PER52) [Arabidopsis Thaliana] (GB:Q9FLC0); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to Peroxidase P7 (TP7) (GB:P0043"
MSGI1_78715	NODE_57865_length_164_cov_10.542683	12	4.9	0.9	1.1	0	0	3.7	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 52 precursor (EC 1.11.1.7) (Atperox P52) (ATP49) (PER52) [Arabidopsis Thaliana] (GB:Q9FLC0); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to Peroxidase P7 (TP7) (GB:P0043"
MSGI1_83462	NODE_57884_length_156_cov_34.724358	26.1	21.9	0.2	0	0	0	7	5.5	protein.postranslational modification	"zinc-binding protein, putative / protein kinase C inhibitor, putative  similar to zinc-binding protein, putative / protein kinase C inhibitor, putative [Arabidopsis thaliana] (TAIR:AT3G56490.1); similar to Histidine triad (HIT) protein [Medicago truncatu"
MSGI1_60842	NODE_57896_length_206_cov_9.043690	53.6	14.1	9.1	10.9	-1.9	0	2.6	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_60842	NODE_57896_length_206_cov_9.043690	53.6	14.1	9.1	10.9	-1.9	0	2.6	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_82223	NODE_57905_length_158_cov_22.651899	13.5	24.5	0	0	0	0	4.8	5.6	not assigned.unknown	not assigned.unknown
MSGI1_84086	NODE_57908_length_155_cov_16.141935	20.3	33.9	19.4	4.9	0	0	0	2.8	not assigned.unknown	not assigned.unknown
MSGI1_71826	NODE_57911_length_178_cov_9.651686	1.3	18.1	8.6	2.1	3.8	0	0	3.1	stress.abiotic.touch/wounding	"wound-responsive family protein  similar to wound-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G10265.1); similar to putative wound-induced protein [Medicago sativa subsp. x varia] (GB:CAB65284.1); similar to wound induced protein [Solanu"
MSGI1_113604	NODE_57957_length_101_cov_8.198020	18	21.7	1.2	0	0	0	3.9	5.4	not assigned.unknown	not assigned.unknown
MSGI1_105504	NODE_57964_length_127_cov_13.881889	14.7	9.1	0	0	0	0	4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_120063	NODE_57968_length_61_cov_19.295082	32.5	1.4	4.4	0.8	-4.5	0	2.9	0	cell wall.pectin*esterases.misc	"pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT1G23200.1); similar to pectinesterase (EC 3.1.1.11) PECS-c2 - sweet orange (GB:T10494); contains InterPro domain Virulence factor, pectin lyase fold; ("
MSGI1_105503	NODE_57993_length_127_cov_11.015748	11.3	10.5	14.2	34.1	0	0	0	-1.7	transport.misc	"permease, putative  Identical to Nucleobase-ascorbate transporter 6 (AtNAT6) (NAT6) [Arabidopsis Thaliana] (GB:Q27GI3;GB:Q3E869;GB:Q94CA7;GB:Q9FM07); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:AT5G49990.1); similar to"
MSGI1_103668	NODE_58003_length_129_cov_14.736434	14.6	7	0.3	0	0	0	5.6	0	not assigned.unknown	not assigned.unknown
MSGI1_113603	NODE_58008_length_101_cov_20.366337	22.7	36.1	5.7	6.2	0	0	2	2.5	not assigned.unknown	not assigned.unknown
MSGI1_100991	NODE_5801_length_132_cov_26.356060	32.1	14.4	9.3	17.1	0	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_81038	NODE_58014_length_160_cov_28.387501	19.2	58.8	19.6	13.4	1.6	0	0	2.1	protein.synthesis.misc ribososomal protein	UBQ5 (UBIQUITIN 5); protein binding  Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical to 40S ribosomal protein S27a-3 (UBQ5) [Arabidopsis Thaliana] (GB:P59233;GB:P192
MSGI1_81038	NODE_58014_length_160_cov_28.387501	19.2	58.8	19.6	13.4	1.6	0	0	2.1	protein.degradation.ubiquitin	UBQ5 (UBIQUITIN 5); protein binding  Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical to 40S ribosomal protein S27a-3 (UBQ5) [Arabidopsis Thaliana] (GB:P59233;GB:P192
MSGI1_89388	NODE_58021_length_147_cov_2.496599	4.2	2	19.4	1.9	0	-3.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_97636	NODE_58033_length_136_cov_19.713236	19.5	18.6	0.5	0	0	0	5.3	5.2	development.unspecified	seven in absentia (SINA) family protein  Identical to E3 ubiquitin-protein ligase SINAT3 (EC 6.3.2.-) (Seven in absentia homolog 3) (SINAT3) [Arabidopsis Thaliana] (GB:Q84JL3;GB:Q8LFQ3;GB:Q9M359); similar to seven in absentia (SINA) family protein [Arabi
MSGI1_64015	NODE_58038_length_197_cov_19.157360	13.4	36.8	45.1	37.7	1.5	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_77646	NODE_58041_length_166_cov_9.048193	3.6	9.5	32.6	14.8	0	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_109466	NODE_58072_length_123_cov_7.674797	6.9	21.9	5.8	1.9	0	0	0	3.5	not assigned.unknown	not assigned.unknown
MSGI1_116681	NODE_58086_length_73_cov_22.986301	14.4	8.8	0	0	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_85998	NODE_58094_length_152_cov_23.026316	13.1	6.1	0.9	3.1	0	0	3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_59570	NODE_58100_length_210_cov_10.890476	9.2	12.3	32.4	20.2	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_93765	NODE_58106_length_141_cov_17.617022	23.1	31.5	73.6	26.8	0	-1.5	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_71345	NODE_58109_length_179_cov_7.770950	11.8	7.9	0	0	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_112897	NODE_58123_length_106_cov_14.037736	2.5	11.6	0.3	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_120056	NODE_58136_length_61_cov_10.852459	8.4	16.9	0.4	2.1	0	0	0	3	not assigned.unknown	not assigned.unknown
MSGI1_88000	NODE_58152_length_149_cov_18.597315	8	18	9	2.9	0	0	0	2.6	not assigned.unknown	not assigned.unknown
MSGI1_113477	NODE_5816_length_102_cov_12.098040	24.1	6.6	4.8	7.7	0	0	2.3	0	"misc.oxidases - copper, flavone etc."	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_74173	NODE_58173_length_173_cov_24.959538	12.3	15.6	9.6	29.8	0	1.6	0	0	nucleotide metabolism.synthesis.pyrimidine.UMP Synthase	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)  Identical to Uridine 5'-monophosphate synthase (UMP synthase) [Includes: Orotate phosphoribosyltransferase (EC 2.4.2.10) (OPRTase); Orotidine 5'- phosphate decarboxylase (EC 4.1.1.23) (OMPd
MSGI1_94530	NODE_58182_length_140_cov_3.771429	2.6	4.1	2.7	21	0	3	0	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_55499	NODE_58191_length_224_cov_76.299110	76.1	103.4	46.9	28.8	0	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_115830	NODE_58201_length_80_cov_71.712502	29.4	16.4	54.9	4.3	0	-3.7	0	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT3G52840.1)"
MSGI1_115830	NODE_58201_length_80_cov_71.712502	29.4	16.4	54.9	4.3	0	-3.7	0	0	"misc.gluco-, galacto- and mannosidases"	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT3G52840.1)"
MSGI1_14205	NODE_5821_length_624_cov_48.360577	4.2	11.8	18.1	3.2	0	-2.5	0	0	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G59550.1); similar to Zinc finger, RING-type; Thioredoxin-related; RINGv [Medicago truncatula] (GB:ABE8198"
MSGI1_30741	NODE_58217_length_362_cov_5.596685	6.9	10.6	0.1	0.1	0	0	0	6.7	not assigned.unknown	not assigned.unknown
MSGI1_65853	NODE_58222_length_192_cov_9.135417	10.7	0	4.6	0.2	-4.4	0	0	0	protein.folding	"heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2)  Identical to Heat shock cognate 70 kDa protein 2 (Hsc70.2) (HSC70-2) [Arabidopsis Thaliana] (GB:P22954;GB:Q9LZ53); similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR"
MSGI1_120046	NODE_5824_length_61_cov_32.754097	28.7	12.6	2	4.1	0	0	3.8	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L35 (RPL35D)  Identical to 60S ribosomal protein L35-4 (RPL35D) [Arabidopsis Thaliana] (GB:Q9LZ41); similar to 60S ribosomal protein L35 (RPL35B) [Arabidopsis thaliana] (TAIR:AT2G39390.1); similar to 60S ribosomal protein L35 (RPL35A
MSGI1_62955	NODE_5825_length_200_cov_148.535004	111.5	59.6	31.4	66.8	0	1.1	1.8	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L35 (RPL35D)  Identical to 60S ribosomal protein L35-4 (RPL35D) [Arabidopsis Thaliana] (GB:Q9LZ41); similar to 60S ribosomal protein L35 (RPL35B) [Arabidopsis thaliana] (TAIR:AT2G39390.1); similar to 60S ribosomal protein L35 (RPL35A
MSGI1_100055	NODE_5826_length_133_cov_53.571430	48.1	86.2	14.8	55	0	1.9	1.7	0	cell wall.cell wall proteins.AGPs	FLA12 (fasciclin-like arabinogalactan-protein 12)  Identical to Fasciclin-like arabinogalactan protein 12 precursor (FLA12) [Arabidopsis Thaliana] (GB:Q8LEE9;GB:Q94EG7;GB:Q9FKJ8); similar to FLA11 (fasciclin-like arabinogalactan-protein 11) [Arabidopsis t
MSGI1_96068	NODE_58267_length_138_cov_5.608696	3.9	22.3	6.8	4.8	2.5	0	0	2.2	not assigned.unknown	not assigned.unknown
MSGI1_93763	NODE_5828_length_141_cov_244.652481	61.2	74.5	3.8	1.7	0	0	4	5.5	signalling.calcium	"calmodulin, putative  Identical to Calmodulin-like protein 1 [Arabidopsis Thaliana] (GB:P30188;GB:Q8LFR1;GB:Q9SLG7); similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT3G10190.1); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:A"
MSGI1_19527	NODE_583_length_514_cov_79.301559	46.7	26.8	10.6	16	0	0	2.1	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L22-2 (RPL22B)  Identical to 60S ribosomal protein L22-2 (RPL22B) [Arabidopsis Thaliana] (GB:Q9M9W1); similar to 60S ribosomal protein L22 (RPL22C) [Arabidopsis thaliana] (TAIR:AT5G27770.1); similar to Ribosomal L22e protein [Medicag
MSGI1_120042	NODE_58303_length_61_cov_22.639345	9.3	15.6	0	0	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_43649	NODE_58312_length_275_cov_6.069091	8.2	10.5	19.5	2.1	0	-3.2	0	0	cell wall.degradation.pectate lyases and polygalacturonases	"polygalacturonase, putative / pectinase, putative  similar to endo-polygalacturonase, putative [Arabidopsis thaliana] (TAIR:AT2G41850.1); similar to polygalacturonase precursor [Cucumis melo] (GB:AAC26512.1); contains InterPro domain Virulence factor, pe"
MSGI1_88707	NODE_58313_length_148_cov_17.067568	51.3	15.5	15.8	13	-1.7	0	1.7	0	cell wall.cell wall proteins.AGPs	"FLA2 (FLA2) AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds Identical to Fasciclin-like arabinogalactan protein 2 precursor (FLA2) [Arabidopsis Thaliana] (GB:Q9SU13;GB:Q8L9T2;GB:Q9C5Q6); similar to FLA1 (F"
MSGI1_2972	NODE_5833_length_1336_cov_50.228294	68.4	80.1	6.3	6.5	0	0	3.4	3.6	amino acid metabolism.degradation.aromatic aa.tyrosine	"fumarylacetoacetase, putative  similar to fumarylacetoacetase [Medicago truncatula] (GB:ABD33010.1); similar to Os02g0196800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046195.1); contains InterPro domain Fumarylacetoacetate (FAA) hydrolase; (Inte"
MSGI1_120039	NODE_58345_length_61_cov_11.081967	34.7	48	0	0	0	0	6.1	6.6	not assigned.unknown	not assigned.unknown
MSGI1_37424	NODE_58382_length_310_cov_8.674193	7.3	10.3	0.1	0.3	0	0	0	5.1	not assigned.unknown	not assigned.unknown
MSGI1_39572	NODE_58394_length_297_cov_8.818182	13.7	4.6	0.8	0.3	0	0	4.1	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_42724	NODE_5840_length_280_cov_97.746429	2.9	39.9	0.4	0.3	3.8	0	0	7.1	not assigned.unknown	not assigned.unknown
MSGI1_9814	NODE_5840_length_769_cov_48.237972	44.1	14.1	7.6	20.3	-1.6	0	2.5	0	amino acid metabolism.degradation.aspartate family.threonine	lactoylglutathione lyase family protein / glyoxalase I family protein  similar to lactoylglutathione lyase family protein / glyoxalase I family protein [Arabidopsis thaliana] (TAIR:AT1G80160.1); similar to Glyoxalase/bleomycin resistance protein/dioxygena
MSGI1_9814	NODE_5840_length_769_cov_48.237972	44.1	14.1	7.6	20.3	-1.6	0	2.5	0	Biodegradation of Xenobiotics.lactoylglutathione lyase	lactoylglutathione lyase family protein / glyoxalase I family protein  similar to lactoylglutathione lyase family protein / glyoxalase I family protein [Arabidopsis thaliana] (TAIR:AT1G80160.1); similar to Glyoxalase/bleomycin resistance protein/dioxygena
MSGI1_104570	NODE_58400_length_128_cov_10.101562	9.7	11.7	0.3	0	0	0	0	4.5	signalling.calcium	calcineurin B subunit-related  similar to phospholipid/glycerol acyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G80950.1); similar to Os06g0712300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058556.1); similar to JD1 [Nicotiana tabac
MSGI1_85361	NODE_58412_length_153_cov_11.699347	14.5	7.6	0.9	2.6	0	0	4	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S4 (RPS4D)  Identical to 40S ribosomal protein S4-1 (RPS4A) [Arabidopsis Thaliana] (GB:Q93VH9;GB:Q7XJS7); Identical to 40S ribosomal protein S4-3 (RPS4D) [Arabidopsis Thaliana] (GB:Q8VYK6;GB:Q944M1;GB:Q9FGI0); Identical to 40S ribos
MSGI1_77110	NODE_5843_length_167_cov_6.928144	0	0	17.5	26.2	0	0	-5.1	-5.7	not assigned.unknown	not assigned.unknown
MSGI1_91521	NODE_58440_length_144_cov_13.319445	1.9	15.1	0.7	10	3	0	0	0	redox.glutaredoxins	glutaredoxin family protein  Identical to Glutaredoxin-C6 (AtGrxC6) (GRXC6) [Arabidopsis Thaliana] (GB:Q8L9S3;GB:O82644); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT5G11930.1); similar to Glutaredoxin [Medicago truncatula] (GB:
MSGI1_49908	NODE_58450_length_246_cov_6.394309	7.2	14.8	6.9	34.5	0	2.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_120031	NODE_58488_length_61_cov_48.114754	28.3	10.2	1.2	2.5	0	0	4.6	0	protein.degradation.subtilases	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G20430.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabid"
MSGI1_120031	NODE_58488_length_61_cov_48.114754	28.3	10.2	1.2	2.5	0	0	4.6	0	cell wall	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G20430.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabid"
MSGI1_37581	NODE_58501_length_309_cov_8.139158	10.8	3.5	0.3	0	0	0	5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_90785	NODE_58520_length_145_cov_10.275862	12.5	13.2	50.2	14.6	0	-1.8	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_116680	NODE_58533_length_73_cov_18.561644	12.1	7.4	0	0	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_42723	NODE_5856_length_280_cov_43.514286	26.5	15.3	6.5	8.8	0	0	2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L37a (RPL37aB)  Identical to Putative 60S ribosomal protein L37a-1 (RPL37AB) [Arabidopsis Thaliana] (GB:Q9SRK6); similar to 60S ribosomal protein L37a (RPL37aC) [Arabidopsis thaliana] (TAIR:AT3G60245.1); similar to 60S ribosomal prot
MSGI1_78188	NODE_58565_length_165_cov_5.569697	4.5	8.6	21.1	16	0	0	-2.2	0	signalling.calcium	ATCBL3 (CALCINEURIN B-LIKE 3) member of AtCBLs (Calcineurin B-like Calcium Sensor Proteins) Identical to Calcineurin B-like protein 3 (SOS3-like calcium-binding protein 6) (CBL3) [Arabidopsis Thaliana] (GB:Q8LEM7;GB:O81447); similar to CBL2 (calcineurin
MSGI1_114021	NODE_58601_length_97_cov_41.618557	31.6	21.6	0.3	0	0	0	6.7	5.4	stress.abiotic.drought/salt	dehydration-responsive family protein  similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G18030.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G10440.1); similar to dehydration-responsi
MSGI1_67902	NODE_58631_length_187_cov_28.855616	18.1	32.4	6.8	41.2	0	2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_7778	NODE_5866_length_867_cov_13.151095	0.3	0.4	23.9	22.2	0	0	-6.3	-5.8	DNA.synthesis/chromatin structure	"DEAD/DEAH box helicase, putative (RH10)  Identical to DEAD-box ATP-dependent RNA helicase 10 (EC 3.6.1.-) (RH10) [Arabidopsis Thaliana] (GB:Q8GY84;GB:Q8LA24;GB:Q9FME1;GB:Q9ZS10); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT"
MSGI1_69585	NODE_58660_length_183_cov_41.967213	45.7	176	146.6	78.3	1.9	0	-1.7	1.2	not assigned.unknown	not assigned.unknown
MSGI1_76097	NODE_58707_length_169_cov_8.568048	8.6	14.6	0	0	0	0	0	4.9	not assigned.unknown	not assigned.unknown
MSGI1_120019	NODE_58715_length_61_cov_15.901639	9.7	12.2	0	0	0	0	0	4.6	TCA / org. transformation.TCA.2-oxoglutarate dehydrogenase	"2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative  similar to 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglu"
MSGI1_26807	NODE_5872_length_404_cov_22.398516	19.4	34.6	21.1	10.6	0	0	0	1.7	misc.UDP glucosyl and glucoronyl transferases	"PGSIP3 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 3); transferase, transferring glycosyl groups  similar to PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G18660"
MSGI1_68708	NODE_58759_length_185_cov_10.713513	5.4	11.4	0.2	0.2	0	0	0	5.8	not assigned.unknown	not assigned.unknown
MSGI1_75090	NODE_58770_length_171_cov_28.035088	19	7.9	0.2	0.2	0	0	6.6	0	not assigned.unknown	not assigned.unknown
MSGI1_85359	NODE_5887_length_153_cov_7.215686	0	0	13.9	0	0	-4.8	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_73216	NODE_5888_length_175_cov_63.748573	41	67.6	1.4	1.5	0	0	4.9	5.5	not assigned.unknown	not assigned.unknown
MSGI1_67901	NODE_5889_length_187_cov_108.513367	132.2	41.9	25	39.8	-1.7	0	2.4	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_67901	NODE_5889_length_187_cov_108.513367	132.2	41.9	25	39.8	-1.7	0	2.4	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_113279	NODE_5893_length_103_cov_92.747574	75.9	231.3	65.4	228.1	1.6	1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_84078	NODE_5894_length_155_cov_14.793549	15.6	13.4	1.1	2.1	0	0	3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_120017	NODE_5896_length_61_cov_17.278688	10.6	12.4	59.8	37.5	0	0	-2.5	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_47885	NODE_5898_length_255_cov_60.227451	5.5	16.1	69.9	12.8	0	-2.4	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_38569	NODE_5898_length_303_cov_18.735973	0	0.1	22.2	37.9	0	0	-5.5	-8.6	not assigned.unknown	not assigned.unknown
MSGI1_61187	NODE_5902_length_205_cov_6.268293	1.7	3.5	15.7	13.6	0	0	-3.2	0	misc.GDSL-motif lipase	"GLIP5 (GDSL-motif lipase 5); carboxylic ester hydrolase Contains lipase signature motif and GDSL domain. similar to GLIP1 (GDSL LIPASE1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT5G40990.1); similar to lipase SIL1 [Brassica rapa subsp. p"
MSGI1_23102	NODE_5909_length_455_cov_15.298902	0.3	0.2	12.1	23.2	0	0	-5.3	-6.9	not assigned.unknown	not assigned.unknown
MSGI1_27318	NODE_5911_length_398_cov_60.052765	3.7	4.8	83	7.2	0	-3.5	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_82834	NODE_59138_length_157_cov_8.541401	1.5	9.1	15.4	3.2	0	0	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_71341	NODE_5916_length_179_cov_148.681564	77.4	81.6	33.9	58.8	0	0	1.2	0	RNA.regulation of transcription.GRAS transcription factor family	"RGL2 (RGA-LIKE 2); transcription factor Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth.  Negative regulator of the  respon"
MSGI1_71341	NODE_5916_length_179_cov_148.681564	77.4	81.6	33.9	58.8	0	0	1.2	0	hormone metabolism.gibberelin.signal transduction	"RGA1 (REPRESSOR OF GA1-3 1); transcription factor Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptio"
MSGI1_14377	NODE_5920_length_619_cov_37.340874	22.7	29.7	18.1	42.2	0	1.2	0	0	hormone metabolism.ethylene.synthesis-degradation	"D-CDES (D-CYSTEINE DESULFHYDRASE); 1-aminocyclopropane-1-carboxylate deaminase/ D-cysteine desulfhydrase/ catalytic Encodes an enzyme that decomposes D-cysteine into pyruvate, H2S, and NH3.  Only D-cysteine but not L-cysteine was converted by D-CDes to p"
MSGI1_4798	NODE_5926_length_1080_cov_16.159260	0.6	0.9	26.6	21.9	0	0	-5.5	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_45317	NODE_5926_length_267_cov_107.996254	86	3.1	25.4	14.5	-4.8	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_69137	NODE_5930_length_184_cov_5.586957	0.3	1	20.2	1.2	0	-4.1	-6.1	0	hormone metabolism.jasmonate.synthesis-degradation.12-Oxo-PDA-reductase	"OPR2 (12-oxophytodienoate reductase 2); 12-oxophytodienoate reductase Encodes one of two closely related 12-oxophytodienoic acid reductases. Identical to 12-oxophytodienoate reductase 2 (EC 1.3.1.42) (12-oxophytodienoate- 10,11-reductase 2) (OPDA-reducta"
MSGI1_82833	NODE_59315_length_157_cov_12.464968	2.5	15.7	6	1.2	0	0	0	3.7	not assigned.unknown	not assigned.unknown
MSGI1_23558	NODE_5933_length_448_cov_25.408482	0.3	1.2	66	13.1	0	-2.3	-7.8	-3.4	not assigned.unknown	not assigned.unknown
MSGI1_31259	NODE_5939_length_357_cov_26.994398	31.8	34.9	53.9	79	0	0	0	-1.2	RNA.transcription	"ATRPB13.6 (Arabidopsis thaliana RNA polymerase II 13.6 kDa subunit); DNA binding / DNA-directed RNA polymerase RNA polymerase II 13.6 kDa subunit (AtRPB13.6) mRNA, Identical to DNA-directed RNA polymerase II subunit J (EC 2.7.7.6) (DNA-directed RNA polym"
MSGI1_17824	NODE_59425_length_541_cov_26.850277	3.8	10.6	38.1	8	0	-2.3	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_66634	NODE_59492_length_190_cov_16.626316	18.3	0.1	1.5	0.2	-7.5	0	3.6	0	cell wall.degradation.pectate lyases and polygalacturonases	pectate lyase family protein  Identical to Probable pectate lyase 5 precursor (EC 4.2.2.2) [Arabidopsis Thaliana] (GB:Q9FXD8;GB:Q8L8V9;GB:Q8W116); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G24780.1); similar to pectate lyase
MSGI1_64012	NODE_59500_length_197_cov_13.223351	9.2	13.7	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_87355	NODE_59526_length_150_cov_12.533334	3.6	6.4	91.9	2.9	0	-5	-4.7	0	"metal handling.binding, chelation and storage"	"ATFP6 (FARNESYLATED PROTEIN 6); metal ion binding putative farnesylated protein (At4g38580) mRNA, complete similar to heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related [Arabidopsis thaliana] (TAIR:AT4G35060.1); similar to"
MSGI1_107433	NODE_5953_length_125_cov_60.967999	56.4	28.7	22.2	36.6	0	0	1.3	0	mitochondrial electron transport / ATP synthesis.cytochrome c oxidase	"cytochrome c oxidase subunit 6b, putative  similar to cytochrome c oxidase subunit 6b, putative [Arabidopsis thaliana] (TAIR:AT4G28060.1); similar to putative cytochrome c oxidase subunit [Triticum aestivum] (GB:AAM92706.1); similar to Os04g0498200 [Oryz"
MSGI1_61185	NODE_5955_length_205_cov_25.356098	0	0	57.6	0	0	-6.8	-6.8	0	cell wall.modification	"ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1) EXPANSIN-RELATED. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-like B1 precursor (AtEXLB1) (AtEXPR1) (At-EXPR1) (Ath- ExpBeta-3.1) (EXLB1) [Arab"
MSGI1_39779	NODE_5957_length_296_cov_9.459459	8.6	5.1	30.3	3.5	0	-3.1	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_23771	NODE_5958_length_444_cov_8.344595	1.3	2.4	14.9	15.4	0	0	-3.5	0	RNA.processing.splicing	"cleavage and polyadenylation specificity factor (CPSF) A subunit C-terminal domain-containing protein  similar to DDB1A (UV-damaged DNA-binding protein 1A), DNA binding [Arabidopsis thaliana] (TAIR:AT4G05420.1); similar to putative Splicing factor 3B sub"
MSGI1_90048	NODE_59580_length_146_cov_119.691780	62.9	49.2	31.7	61.8	0	1	1	0	transport.misc	"protein transport protein sec61, putative  similar to protein transport protein sec61, putative [Arabidopsis thaliana] (TAIR:AT1G78720.1); similar to protein translocase [Arabidopsis thaliana] (TAIR:AT2G34250.2); similar to putative integral membrane pro"
MSGI1_18693	NODE_59584_length_527_cov_34.958256	11.7	30.9	40.1	11.8	0	-1.8	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_71340	NODE_59616_length_179_cov_13.480447	29.6	14.4	3.9	5.7	0	0	2.9	0	PS.lightreaction.photosystem I.PSI polypeptide subunits	"PSAD-1 (photosystem I subunit D-1) Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD1) Identical to Photosystem I reaction center subunit II-1, chloroplast precursor (Photosystem I 2"
MSGI1_30615	NODE_59618_length_363_cov_17.790634	23.1	9.8	5.6	3.4	0	0	2	0	stress.biotic	disease resistance-responsive family protein / dirigent family protein  similar to disease resistance-responsive family protein / dirigent family protein [Arabidopsis thaliana] (TAIR:AT1G64160.1); similar to dirigent-like protein [Thuja plicata] (GB:AAF25
MSGI1_45764	NODE_5965_length_265_cov_45.675472	36.8	86.3	34	117.6	1.2	1.8	0	0	transport.amino acids	amino acid transporter family protein  similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT3G30390.2); similar to Os06g0633800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058132.1); similar to Os06g0275800 [Oryza sativa
MSGI1_117293	NODE_5967_length_68_cov_64.617645	13.9	18.7	30.2	5.8	0	-2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_4021	NODE_5968_length_1168_cov_34.518837	24.5	18.1	18.1	58.5	0	1.7	0	-1.7	major CHO metabolism.degradation.starch.starch phosphorylase	"glucan phosphorylase, putative Encodes a plastidic alpha-glucan phosphorylase.  In vitro, the enzyme has a preference for maltooligosaccharides, such as maltoheptaose. similar to ATPHS2/PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2), phosphorylase/ transferase, tra"
MSGI1_31580	NODE_5971_length_354_cov_66.751411	83	49.5	40.3	68.4	0	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_27649	NODE_5975_length_394_cov_38.675125	75.2	17	42.3	37.6	-2.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_59262	NODE_5976_length_211_cov_7.663507	1	2.4	15.9	8.8	0	0	-4	0	protein.synthesis.elongation	"EMB2726 (EMBRYO DEFECTIVE 2726); translation elongation factor  similar to translation elongation factor Ts (EF-Ts), putative [Arabidopsis thaliana] (TAIR:AT4G11120.1); similar to Os12g0541500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066956.1);"
MSGI1_64395	NODE_59788_length_196_cov_7.010204	2.8	5.6	25.9	3.1	0	-3.1	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_92220	NODE_59829_length_143_cov_5.517482	2.2	5.4	20.2	4.9	0	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_48547	NODE_5983_length_252_cov_32.547619	0	0	45.8	41.5	0	0	-6.5	-6.4	not assigned.unknown	not assigned.unknown
MSGI1_116679	NODE_5986_length_73_cov_5.041096	0	0.2	5.8	15.8	0	0	0	-6.3	glycolysis.PK	"pyruvate kinase, putative  similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT2G36580.1); similar to Pyruvate kinase [Medicago truncatula] (GB:ABE80121.1); similar to pyruvate kinase-like [Deschampsia antarctica] (GB:AAM22747.1); similar"
MSGI1_60838	NODE_5987_length_206_cov_44.082523	22.2	0.2	6.9	0.4	-6.8	0	0	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	SHN2 (SHINE2); DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
MSGI1_79281	NODE_59882_length_163_cov_7.288343	1.5	6	21.1	2.2	0	-3.3	-3.8	0	RNA.regulation of transcription.MYB domain transcription factor family	"MYB20 (myb domain protein 20); DNA binding / transcription factor Encodes a putative transcription factor (MYB20). similar to MYB43 (myb domain protein 43), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G16600.1); similar to myb-rela"
MSGI1_79281	NODE_59882_length_163_cov_7.288343	1.5	6	21.1	2.2	0	-3.3	-3.8	0	cell wall	"MYB20 (myb domain protein 20); DNA binding / transcription factor Encodes a putative transcription factor (MYB20). similar to MYB43 (myb domain protein 43), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G16600.1); similar to myb-rela"
MSGI1_25521	NODE_59887_length_420_cov_9.409524	10.1	0.9	66.3	6.1	0	-3.4	-2.7	0	cell wall	"peroxidase 72 (PER72) (P72) (PRXR8)  Identical to Peroxidase 72 precursor (EC 1.11.1.7) (Atperox P72) (PRXR8) (ATP6a) (PER72) [Arabidopsis Thaliana] (GB:Q9FJZ9;GB:Q43736); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G36430.1); similar"
MSGI1_25521	NODE_59887_length_420_cov_9.409524	10.1	0.9	66.3	6.1	0	-3.4	-2.7	0	misc.peroxidases	"peroxidase 72 (PER72) (P72) (PRXR8)  Identical to Peroxidase 72 precursor (EC 1.11.1.7) (Atperox P72) (PRXR8) (ATP6a) (PER72) [Arabidopsis Thaliana] (GB:Q9FJZ9;GB:Q43736); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G36430.1); similar"
MSGI1_26383	NODE_59890_length_409_cov_58.110023	19.3	23	59.1	22.6	0	-1.4	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_73706	NODE_59919_length_174_cov_6.632184	2.8	10.3	82	0	0	-7.4	-4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_47654	NODE_59924_length_256_cov_5.476562	2.3	3.7	11.9	0.2	0	-5.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_37276	NODE_59934_length_311_cov_6.800643	4.1	4.9	22.6	14.1	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_117821	NODE_59945_length_64_cov_42.968750	8.6	37.2	7.4	20.1	2.1	0	0	0	protein.targeting.nucleus	"importin alpha-2 subunit, putative  similar to importin alpha-1 subunit, putative (IMPA4) [Arabidopsis thaliana] (TAIR:AT1G09270.2); similar to ATIMPALPHA3/MOS6, protein transporter [Arabidopsis thaliana] (TAIR:AT4G02150.1); similar to AT-IMP (Arabidopsi"
MSGI1_111063	NODE_5995_length_121_cov_100.809914	53.5	22.1	16	16.5	-1.3	0	1.7	0	cell wall.precursor synthesis.UGD	"ATUGD1/UGD1 (UDP-glucose dehydrogenase 1); UDP-glucose 6-dehydrogenase  similar to UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G29360.2); similar to UDP-glucose 6-dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G39320.1); similar"
MSGI1_95270	NODE_59954_length_139_cov_33.748203	14.2	15.5	39.1	17.8	0	0	-1.5	0	cell wall.precursor synthesis.RHM	"RHM1/ROL1 (RHAMNOSE BIOSYNTHESIS1); UDP-glucose 4,6-dehydratase/ catalytic Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha.  The de"
MSGI1_113277	NODE_59958_length_103_cov_21.485437	14.7	23.3	0	0	0	0	4.9	5.5	cell wall	"TUB9 (tubulin beta-9 chain); structural molecule tubulin 9 Identical to Tubulin beta-9 chain (Beta-9 tubulin) (TUBB9) [Arabidopsis Thaliana] (GB:P29517); similar to TUB3 (Tubulin beta-3), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62700.1); sim"
MSGI1_113277	NODE_59958_length_103_cov_21.485437	14.7	23.3	0	0	0	0	4.9	5.5	cell.organisation	"TUB9 (tubulin beta-9 chain); structural molecule tubulin 9 Identical to Tubulin beta-9 chain (Beta-9 tubulin) (TUBB9) [Arabidopsis Thaliana] (GB:P29517); similar to TUB3 (Tubulin beta-3), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62700.1); sim"
MSGI1_119989	NODE_59967_length_61_cov_18.606558	12.7	17.3	0	0	0	0	4.7	5.1	cell.cycle.peptidylprolyl isomerase	"ROF1 (ROTAMASE FKBP 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase Encodes a a high molecular weight member of the FK506 binding protein (FKBP) family.  It has three FKBP12-like domains, tetratricopeptide repeats, and a puta"
MSGI1_91514	NODE_59969_length_144_cov_24.513889	26.2	2.5	6.2	13	-3.4	0	2.1	0	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit At1g60390 precursor (Aromatic-rich glycoprotein At1g60390) [Arabidopsis Thaliana] (GB:O80760); similar to JP630, polygalacturonase"
MSGI1_119986	NODE_59982_length_61_cov_24.311476	0.2	17.4	0	1.2	6.4	0	0	3.9	not assigned.unknown	not assigned.unknown
MSGI1_113276	NODE_59988_length_103_cov_9.524272	8.9	21	0	0	0	0	0	5.4	amino acid metabolism.synthesis.aromatic aa.phenylalanine.arogenate dehydratase / prephenate dehydratase	prephenate dehydratase family protein  similar to prephenate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT3G44720.1); similar to prephenate dehydratase [Ipomoea trifida] (GB:AAS79603.1); contains InterPro domain Prephenate dehydratase; (Inter
MSGI1_23715	NODE_60000_length_445_cov_7.847191	15.7	0.1	5.8	1.4	-7.3	0	0	0	RNA.regulation of transcription.zf-HD	"ATHB31; DNA binding / transcription factor  similar to ATHB21/ZFHD4 (ZINC FINGER HOMEODOMAIN 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G02540.1); similar to Os11g0243300 [Oryza sativa (japonica cultivar-group)] (GB:NP_0010675"
MSGI1_45078	NODE_60001_length_268_cov_5.656716	3	3.4	91.2	5.8	0	-4	-4.9	0	amino acid metabolism.degradation.aspartate family.methionine.methionine gamma-lyase	"ATMGL; catalytic/ methionine gamma-lyase Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methio"
MSGI1_116896	NODE_60010_length_71_cov_7.732394	1.9	5.8	21	7.2	0	0	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_69577	NODE_60038_length_183_cov_7.174863	6.2	11.5	0.8	0.2	0	0	0	5.8	not assigned.unknown	not assigned.unknown
MSGI1_49635	NODE_6004_length_247_cov_143.522263	81.2	12.8	31	10.1	-2.7	0	1.4	0	"misc.gluco-, galacto- and mannosidases"	"BGAL3 (beta-galactosidase 3); beta-galactosidase putative beta-galactosidase (BGAL3 gene) similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT1G45130.1); similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase ["
MSGI1_49635	NODE_6004_length_247_cov_143.522263	81.2	12.8	31	10.1	-2.7	0	1.4	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL3 (beta-galactosidase 3); beta-galactosidase putative beta-galactosidase (BGAL3 gene) similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT1G45130.1); similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase ["
MSGI1_86656	NODE_60054_length_151_cov_14.788079	15.4	7.3	0	0	0	0	4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_80474	NODE_60058_length_161_cov_11.372671	12.1	13	0	0	0	0	4.6	4.7	amino acid metabolism.synthesis.histidine.histidinol dehydrogenase	"ATHDH (HISTIDINOL DEHYDROGENASE) Encodes histidinol dehydrogenase. Up-regulated in response to UV-B. Identical to Histidinol dehydrogenase, chloroplast precursor (EC 1.1.1.23) (HDH) (HDH) [Arabidopsis Thaliana] (GB:Q9C5U8;GB:Q8LA77;GB:Q9FN00); similar to"
MSGI1_101828	NODE_60073_length_131_cov_5.351145	3.1	7.5	19.2	6.5	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_119976	NODE_6011_length_61_cov_40.016392	23.5	1.6	0	0	-3.9	0	5.6	0	not assigned.unknown	not assigned.unknown
MSGI1_70057	NODE_60120_length_182_cov_8.450549	10.9	13.9	0.8	1.2	0	0	0	3.5	protein.degradation.ubiquitin.E3.SCF.FBOX	F-box family protein (FBX3)  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G61590.1); similar to H0701F11.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86135.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contai
MSGI1_112498	NODE_6013_length_109_cov_46.449543	53.4	18.9	1.7	3.3	-1.5	0	5	2.5	DNA.synthesis/chromatin structure.histone	"histone H2B, putative  Identical to Histone H2B.1 (HTB1) [Arabidopsis Thaliana] (GB:Q9LQQ4;GB:Q8L950); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold; (InterPro:"
MSGI1_109448	NODE_60135_length_123_cov_7.715447	6	2.4	14.2	1.4	0	-3.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_21552	NODE_60148_length_476_cov_16.474791	12.7	13.3	38.7	13.6	0	-1.5	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_91510	NODE_6021_length_144_cov_13.562500	9.8	18.5	11.9	3.2	0	0	0	2.5	not assigned.unknown	not assigned.unknown
MSGI1_47418	NODE_60240_length_257_cov_8.346304	11.7	0.3	3.7	0	-5.3	0	0	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY60 (WRKY DNA-binding protein 60); transcription factor Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both  P. syringae and B. cinerea. WR
MSGI1_84723	NODE_60259_length_154_cov_12.850649	12.5	5.7	1.1	1.9	0	0	3.5	0	protein.glycosylation	galactosyltransferase family protein  similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT2G32430.1); similar to Os03g0577500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050543.1); similar to putative Avr9 elicitor respo
MSGI1_119966	NODE_60260_length_61_cov_20.540983	13.6	7.2	0	0	0	0	4.8	0	misc.UDP glucosyl and glucoronyl transferases	"exostosin family protein Homolog of FRA8 (AT2G28110), a member of a member of glycosyltransferase family 47; exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. similar to FRA8 (FRAGILE FIBER8), transfer"
MSGI1_119965	NODE_60263_length_61_cov_21.688524	11.2	6.7	0	0	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_105485	NODE_60265_length_127_cov_13.188976	8.8	11.2	0	0	0	0	0	4.5	"metal handling.binding, chelation and storage"	"ATFER1 (ferretin 1); ferric iron binding Encodes  a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Identical to Ferritin-1, chloroplast"
MSGI1_24838	NODE_6027_length_429_cov_58.850815	25.7	7.1	7.1	3.9	-1.9	0	1.9	0	cell wall	"glycosyl hydrolase family 17 protein  similar to hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT4G26830.1); similar to elicitor inducible beta-1,3-glucanase NtEIG-E76 [Nicotiana tabacum] (GB:BAB17320.1); similar to beta-1,3-gl"
MSGI1_105484	NODE_60292_length_127_cov_9.889764	10.7	27.9	8	4	0	0	0	2.8	not assigned.unknown	not assigned.unknown
MSGI1_113674	NODE_60304_length_100_cov_9.000000	8.1	19.7	0	0.3	0	0	0	6	cell wall.cellulose synthesis.COBRA	"COBL4/IRX6 (COBRA-LIKE4); hydrolase, hydrolyzing O-glycosyl compounds / polysaccharide binding Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduc"
MSGI1_52866	NODE_60319_length_234_cov_12.047009	6.8	2.1	22.7	3.4	0	-2.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_60215	NODE_60335_length_208_cov_8.894231	15.1	0.6	1.1	0.6	-4.7	0	3.8	0	misc.cytochrome P450	"cytochrome P450, putative  similar to CYP96A3 (cytochrome P450, family 96, subfamily A, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G65340.1); similar to CYP96A4 (cytochrome P450, family 96, subfamily A, polypeptide 4), oxygen binding"
MSGI1_77636	NODE_6035_length_166_cov_8.963856	2.7	1.1	19.7	5.5	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_74593	NODE_60351_length_172_cov_26.220930	56	37.2	82.9	162.1	0	1	0	-2.1	protein.degradation.serine protease	"SCPL21 (serine carboxypeptidase-like 21); serine carboxypeptidase  similar to SCPL20 (serine carboxypeptidase-like 20), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT4G12910.1); similar to wound-inducible carboxypeptidase [Lycopersicon esculentu"
MSGI1_93750	NODE_60361_length_141_cov_3.078014	1.8	2.9	26	9.4	0	0	-3.9	0	misc.cytochrome P450	"CYP707A4 (cytochrome P450, family 707, subfamily A, polypeptide 4); oxygen binding Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. similar to CYP707A1 (cytochrome P450, family 707, subfam"
MSGI1_46211	NODE_60378_length_263_cov_9.551331	9.6	29.5	1.8	15.3	0	3.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_119957	NODE_60392_length_61_cov_16.098360	11.9	15.8	0	0	0	0	4.6	5	not assigned.unknown	not assigned.unknown
MSGI1_28034	NODE_6041_length_390_cov_22.433332	0.1	0.2	84	1.1	0	-6.3	-9.7	0	not assigned.unknown	not assigned.unknown
MSGI1_81031	NODE_60414_length_160_cov_8.918750	7.4	9.3	56.1	45	0	0	-2.9	-2.3	not assigned.unknown	not assigned.unknown
MSGI1_54154	NODE_60426_length_229_cov_8.825328	10.7	38.9	29.3	9.5	1.9	0	0	2	transport.potassium	potassium channel tetramerisation domain-containing protein  similar to potassium channel tetramerisation domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G09030.1); similar to BTB/POZ [Medicago truncatula] (GB:ABD28655.1); contains InterPro doma
MSGI1_116524	NODE_60432_length_74_cov_25.567568	16.5	16.7	0.7	0.4	0	0	4.6	5.4	not assigned.unknown	not assigned.unknown
MSGI1_34510	NODE_6044_length_331_cov_13.048338	2	1.8	16.1	4.2	0	0	-3	0	protein.postranslational modification	protein phosphatase 2C family protein / PP2C family protein  similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT1G03590.1); similar to Protein phosphatase 2C-like [Medicago truncatula] (GB:ABE77622.1); co
MSGI1_82829	NODE_60453_length_157_cov_4.719745	4.8	15.7	0.4	1.2	0	0	0	3.7	not assigned.unknown	not assigned.unknown
MSGI1_82205	NODE_60457_length_158_cov_11.810126	13.7	0.1	0.2	0	-7.1	0	6.1	0	not assigned.unknown	not assigned.unknown
MSGI1_60213	NODE_6047_length_208_cov_329.817322	250.2	111.6	60.3	133.3	-1.2	1.1	2.1	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L37 (RPL37B)  Identical to 60S ribosomal protein L37-2 (RPL37B) [Arabidopsis Thaliana] (GB:Q43292;GB:Q9C822); similar to 60S ribosomal protein L37 (RPL37C) [Arabidopsis thaliana] (TAIR:AT3G16080.1); similar to ribosomal protein L37 [
MSGI1_44846	NODE_60525_length_269_cov_25.579926	0	34.8	13.1	121.3	6.1	3.2	-4.7	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_98390	NODE_60526_length_135_cov_17.066668	4.2	7.1	45.4	31.7	0	0	-3.4	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_84719	NODE_60544_length_154_cov_5.831169	5.1	3.6	19.2	43.4	0	0	0	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_68700	NODE_60552_length_185_cov_8.983784	28	5.1	8.7	13.4	-2.5	0	1.7	0	redox.peroxiredoxin	"peroxiredoxin Q, putative encodes periredoxin Q which decomposes peroxides and plays a role in the protection of the photosynthetic apparatus similar to 2-cys peroxiredoxin, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT5G06290.1); similar to pero"
MSGI1_40999	NODE_60560_length_289_cov_9.581315	1.4	11.2	1.5	0.6	0	0	0	4.2	not assigned.unknown	not assigned.unknown
MSGI1_9313	NODE_606_length_790_cov_42.075951	2.6	1.8	100.1	2.3	0	-5.4	-5.3	0	protein.postranslational modification	"HAB1 (HOMOLOGY TO ABI1); protein phosphatase type 2C mutant has ABA hypersensitive inhibition of seed germination; Protein Phosphatase 2C similar to HAB2 (Homology to ABI2), protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT1G17550.1); similar t"
MSGI1_114654	NODE_60608_length_91_cov_15.494506	15.9	9.8	0	0	0	0	5	0	cell wall	GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP5) Identical to Germin-like protein subfamily 2 member 1 precursor (GLP4) [Arabidopsis Thaliana] (GB:P94014;GB:O80538;GB:P94097); similar
MSGI1_114654	NODE_60608_length_91_cov_15.494506	15.9	9.8	0	0	0	0	5	0	stress.abiotic.unspecified	GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP5) Identical to Germin-like protein subfamily 2 member 1 precursor (GLP4) [Arabidopsis Thaliana] (GB:P94014;GB:O80538;GB:P94097); similar
MSGI1_119947	NODE_60613_length_61_cov_21.901640	7.1	11.5	0	0	0	0	0	4.5	protein.degradation.ubiquitin.E3.HECT	KAK (KAKTUS) encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. similar to UPL4 (ubiquitin-protein ligase 4) [Ar
MSGI1_21080	NODE_6063_length_483_cov_53.142857	40.9	33.7	16.4	19.4	0	0	1.3	0	amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoserine aminotransferase	"phosphoserine aminotransferase, putative  similar to PSAT (phosphoserine aminotransferase), phosphoserine transaminase [Arabidopsis thaliana] (TAIR:AT4G35630.1); similar to phosphoserine aminotransferase [Medicago truncatula] (GB:ABE77665.1); contains In"
MSGI1_45074	NODE_6064_length_268_cov_109.373131	22.9	80	37.6	26.3	1.8	0	0	1.6	hormone metabolism.ethylene.signal transduction	ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5); DNA binding / transcription factor/ transcriptional activator encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-5). The protein contains
MSGI1_45074	NODE_6064_length_268_cov_109.373131	22.9	80	37.6	26.3	1.8	0	0	1.6	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5); DNA binding / transcription factor/ transcriptional activator encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-5). The protein contains
MSGI1_67053	NODE_60644_length_189_cov_10.809524	9.8	22	34.3	26.8	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_51022	NODE_60646_length_241_cov_10.439834	12.4	0.1	9.9	1	-7	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_51022	NODE_60646_length_241_cov_10.439834	12.4	0.1	9.9	1	-7	0	0	0	development.unspecified	"family II extracellular lipase 1 (EXL1)  similar to family II extracellular lipase 2 (EXL2) [Arabidopsis thaliana] (TAIR:AT1G75890.2); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE88960.1); contains InterPro domain Lipolytic enzyme,"
MSGI1_16325	NODE_60648_length_571_cov_12.693521	8.2	11.5	0.6	0.1	0	0	0	6.8	not assigned.unknown	not assigned.unknown
MSGI1_66630	NODE_60650_length_190_cov_7.315790	8.8	7.5	219.1	1	0	-7.8	-4.6	0	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase	"NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE3) Encodes  9-<i>cis</i>-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chl"
MSGI1_49633	NODE_60652_length_247_cov_9.360324	7.4	24.2	3.8	24.2	0	2.7	0	0	stress.abiotic.heat	heat shock protein-related  similar to ATP-dependent Clp protease ClpB protein-related [Arabidopsis thaliana] (TAIR:AT1G07200.2); similar to Os11g0104300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065527.1); similar to expressed protein [Oryza sat
MSGI1_29578	NODE_6066_length_373_cov_24.887400	16.8	10.8	0	0	0	0	5.1	4.4	cell. vesicle transport	"coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16200.1); similar to Adaptin N terminal re (GB:ABE87941.1); similar to PREDICTED: similar to coatomer"
MSGI1_85980	NODE_60670_length_152_cov_3.375000	4.4	6	39	1.4	0	-4.8	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_69572	NODE_60675_length_183_cov_12.590164	7.2	13.9	1	0.6	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_89372	NODE_60684_length_147_cov_10.639456	15	7.5	2.1	2.9	0	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_34509	NODE_60696_length_331_cov_29.465258	27.3	4.3	15.6	7.7	-2.7	0	0	0	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit JP650 precursor (Aromatic-rich glycoprotein JP650) (JP650) [Arabidopsis Thaliana] (GB:P92990;GB:O64599;GB:Q8H7B8;GB:Q93ZQ4); simil"
MSGI1_61541	NODE_60699_length_204_cov_7.514706	9.6	21.4	33.9	3.2	0	-3.4	-1.8	2.7	not assigned.unknown	not assigned.unknown
MSGI1_66216	NODE_60718_length_191_cov_8.209424	10.8	9.9	0	0	0	0	4.4	0	not assigned.unknown	not assigned.unknown
MSGI1_119937	NODE_60742_length_61_cov_10.147541	12.7	8.3	1.2	1.2	0	0	3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_59258	NODE_6078_length_211_cov_14.829384	0	0	21.4	41.8	0	0	-5.4	-6.4	not assigned.unknown	not assigned.unknown
MSGI1_47652	NODE_6078_length_256_cov_23.007812	27.4	10.3	4.3	3	0	0	2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_53671	NODE_60806_length_231_cov_12.203464	15.2	0.8	4	1.5	-4.2	0	0	0	"misc.oxidases - copper, flavone etc."	flavin-containing monooxygenase family protein / FMO family protein  similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT5G07800.1); similar to putative flavin-containing monooxygenase FMO-1 [Oryz
MSGI1_84065	NODE_60818_length_155_cov_11.754839	14.5	17.9	0	0.2	0	0	4.9	6.5	not assigned.unknown	not assigned.unknown
MSGI1_80464	NODE_60834_length_161_cov_15.763975	7.2	36.5	5.7	35.1	2.3	2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_108394	NODE_6085_length_124_cov_125.500000	108.7	55.8	23.4	25.2	0	0	2.2	1.1	amino acid metabolism.synthesis.serine-glycine-cysteine group.glycine.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_108394	NODE_6085_length_124_cov_125.500000	108.7	55.8	23.4	25.2	0	0	2.2	1.1	PS.photorespiration.serine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_108394	NODE_6085_length_124_cov_125.500000	108.7	55.8	23.4	25.2	0	0	2.2	1.1	C1-metabolism.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_99253	NODE_6086_length_134_cov_5.037313	5.6	6.2	23.9	11.3	0	0	-2.1	0	cell wall	"AtMYB40 (myb domain protein 40); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to MYB20 (myb domain protein 20), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G66230.1); similar to myb-related tran"
MSGI1_99253	NODE_6086_length_134_cov_5.037313	5.6	6.2	23.9	11.3	0	0	-2.1	0	RNA.regulation of transcription.MYB domain transcription factor family	"AtMYB40 (myb domain protein 40); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to MYB20 (myb domain protein 20), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G66230.1); similar to myb-related tran"
MSGI1_84715	NODE_6088_length_154_cov_38.961040	18.8	15.3	2.7	8.2	0	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_84714	NODE_60891_length_154_cov_4.551948	3.8	2.3	27.1	1.2	0	-4.5	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_40817	NODE_60894_length_290_cov_14.031034	1.2	18.3	3	1	3.9	0	0	4.2	not assigned.unknown	not assigned.unknown
MSGI1_32163	NODE_6090_length_349_cov_191.134674	57.3	86.4	168.1	64.1	0	-1.4	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_119925	NODE_60918_length_61_cov_20.901640	13.1	12.9	0	0	0	0	4.7	4.7	not assigned.unknown	not assigned.unknown
MSGI1_57134	NODE_60939_length_218_cov_13.660550	11.5	2.7	0.5	0	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_80461	NODE_60968_length_161_cov_24.708075	6.5	28	27.8	15.6	2.1	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_12291	NODE_6097_length_680_cov_49.402943	22.7	28.6	67.3	28.4	0	-1.2	-1.6	0	transport.potassium	AKT2 (Arabidopsis K+ transporter 2); cyclic nucleotide binding / inward rectifier potassium channel Encodes a photosynthate- and light-dependent inward rectifying potassium channel with unique gating properties that are regulated by phosphorylation.  Exp
MSGI1_92952	NODE_6099_length_142_cov_12.112676	0.9	1.8	14.1	26.2	0	0	-4	-3.9	protein.aa activation.lysine-tRNA ligase	"lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative  Identical to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) [Arabidopsis Thaliana] (GB:Q9ZPI1); similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Ar"
MSGI1_7876	NODE_61_length_862_cov_11.238979	0.3	1	19.2	21.1	0	0	-6	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_119916	NODE_61017_length_61_cov_19.475410	4.8	12.2	0	0	0	0	0	4.6	cell wall	"MYB107 (myb domain protein 107); DNA binding / transcription factor Encodes a putative transcription factor (MYB107). similar to AtMYB9 (myb domain protein 9), DNA binding [Arabidopsis thaliana] (TAIR:AT5G16770.2); similar to transcription factor MYB101"
MSGI1_119916	NODE_61017_length_61_cov_19.475410	4.8	12.2	0	0	0	0	0	4.6	RNA.regulation of transcription.MYB domain transcription factor family	"MYB107 (myb domain protein 107); DNA binding / transcription factor Encodes a putative transcription factor (MYB107). similar to AtMYB9 (myb domain protein 9), DNA binding [Arabidopsis thaliana] (TAIR:AT5G16770.2); similar to transcription factor MYB101"
MSGI1_102730	NODE_61036_length_130_cov_6.692307	6.9	5.5	24.2	3.4	0	-2.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_92948	NODE_61082_length_142_cov_29.669014	3.2	19	9.3	9.1	2.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_37579	NODE_61092_length_309_cov_11.812298	16.9	6	1.2	4.9	0	0	3.8	0	TCA / org. transformation.TCA.pyruvate DH.E2	"EMB3003 (EMBRYO DEFECTIVE 3003); dihydrolipoyllysine-residue acetyltransferase  similar to LTA2 (PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE), dihydrolipoyllysine-residue acetyltransferase [Arabidopsis thaliana] (TAIR:AT3G25860.1); similar to Os12g01822"
MSGI1_36546	NODE_6110_length_316_cov_12.955696	0	0	21.7	23.5	0	0	-5.4	-5.6	not assigned.unknown	not assigned.unknown
MSGI1_119906	NODE_61111_length_61_cov_44.032787	11.7	16.9	0.4	0	0	0	4.9	5.1	not assigned.unknown	not assigned.unknown
MSGI1_114137	NODE_61118_length_96_cov_16.770834	13.9	20.4	0.3	0	0	0	5.5	5.4	not assigned.unknown	not assigned.unknown
MSGI1_119905	NODE_61124_length_61_cov_24.836065	56.1	57.7	68.2	16.5	0	-2	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_103645	NODE_61126_length_129_cov_4.604651	2.4	2.5	27.6	9	0	0	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_12460	NODE_61135_length_675_cov_48.410370	26.1	5.9	25.7	9.1	-2.1	0	0	0	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17380.1); similar to PnFL-2 [Ipomoea nil] (GB:AAG49896.1); similar to Os07g0615200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060268.1); similar to Os03g0402800 [Oryza sativa (japonica cu
MSGI1_25669	NODE_6114_length_418_cov_16.787081	35.2	20.9	10.9	18.4	0	0	1.7	0	RNA.processing	"similar to small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative [Arabidopsis thaliana] (TAIR:AT2G47640.4); similar to Os05g0314100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055168.1); similar"
MSGI1_39260	NODE_6115_length_299_cov_24.521740	21.9	3.1	8	6.1	-2.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_111774	NODE_61189_length_115_cov_43.113045	34.7	8.4	42.1	9.2	-2	-2.2	0	0	cell wall	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_111774	NODE_61189_length_115_cov_43.113045	34.7	8.4	42.1	9.2	-2	-2.2	0	0	secondary metabolism.simple phenols	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_54151	NODE_6119_length_229_cov_6.078603	1	9.2	11.1	0.5	0	-4.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_119898	NODE_61206_length_61_cov_16.983606	10.3	10.8	0.4	0	0	0	0	4.4	not assigned.unknown	not assigned.unknown
MSGI1_39063	NODE_61208_length_300_cov_11.346666	8.7	20.3	15.1	3.5	0	0	0	2.5	signalling.calcium	"calcium-binding EF hand family protein  similar to PBP1 (PINOID-BINDING PROTEIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G54490.1); similar to Avr9/Cf-9 rapidly elicited protein 20 [Nicotiana tabacum] (GB:AAV92890.1); contains InterPro dom"
MSGI1_37578	NODE_6125_length_309_cov_28.786407	34.6	29.7	0.4	0	0	0	6.4	5.9	protein.targeting.secretory pathway.unspecified	"clathrin adaptor complexes medium subunit family protein clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family; similar to micro-adaptins of clathrin coated vesicle adaptor comple"
MSGI1_119895	NODE_61294_length_61_cov_10.803279	6.2	11.9	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_79271	NODE_6130_length_163_cov_29.276073	0	0	16.3	65.9	0	2	-5	-7	not assigned.unknown	not assigned.unknown
MSGI1_67891	NODE_61302_length_187_cov_15.818182	17.4	19.2	0	0	0	0	5.1	5.3	not assigned.unknown	not assigned.unknown
MSGI1_119893	NODE_6131_length_61_cov_92.950821	55.4	14.2	21.1	10.3	-2	0	1.4	0	secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA reductase	"HMG1 (3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE) Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in l"
MSGI1_94507	NODE_61317_length_140_cov_22.064285	21.6	16.8	0	0	0	0	5.4	5.1	not assigned.unknown	not assigned.unknown
MSGI1_63310	NODE_61336_length_199_cov_11.517588	4.7	12.2	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_116276	NODE_61340_length_76_cov_49.513157	30.8	7.9	18.5	11.7	-2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_9630	NODE_6135_length_777_cov_18.499357	15.9	65.4	15.9	40.3	2	1.3	0	0	cell wall.cellulose synthesis.cellulose synthase	"IRX3 (IRREGULAR XYLEM 3, MURUS 10); cellulose synthase encodes a xylem-specific cellulose synthase Identical to Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) (CESA7) [Arabidopsis Thal"
MSGI1_77632	NODE_61388_length_166_cov_11.722892	13.1	6.8	0	0	0	0	4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_119889	NODE_61396_length_61_cov_18.803278	11.9	0.4	2.8	2.5	-4.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_90762	NODE_61397_length_145_cov_39.393105	19	27.1	1.9	0.2	0	0	3.3	7.1	not assigned.unknown	not assigned.unknown
MSGI1_51587	NODE_6141_length_239_cov_82.874474	100.7	0.9	0.3	0	-6.8	0	8.4	0	not assigned.unknown	not assigned.unknown
MSGI1_58989	NODE_61414_length_212_cov_11.136792	3.3	12.7	0	0	0	0	0	4.7	minor CHO metabolism.others	aldo/keto reductase family protein  similar to oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G37770.2); similar to aldose reductase [Di (GB:CAC32834.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395)
MSGI1_102728	NODE_61418_length_130_cov_6.300000	2.1	5.2	26.9	0	0	-5.7	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_50615	NODE_6142_length_243_cov_191.609055	198.2	90.2	72.5	58.5	-1.1	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_52321	NODE_61424_length_236_cov_17.423729	0.7	17.8	7.2	4.7	4.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_68290	NODE_6144_length_186_cov_29.758064	30.8	2.9	4.3	2.2	-3.4	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_117819	NODE_61446_length_64_cov_10.421875	15.8	6	1.9	2.4	0	0	3.1	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase, putative  similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to LOX1 (Lipoxygenase 1), lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G55020.1); similar to lipoxygenase, putati"
MSGI1_119883	NODE_61449_length_61_cov_9.426229	4.3	6.1	27.1	12.4	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_84061	NODE_61493_length_155_cov_10.670968	11.2	13.5	2.5	1.2	0	0	0	3.5	not assigned.unknown	not assigned.unknown
MSGI1_73206	NODE_61497_length_175_cov_7.222857	4.5	21.6	24.9	12.8	2.3	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_37577	NODE_61503_length_309_cov_8.841424	24	11.7	4.4	8.4	0	0	2.4	0	nucleotide metabolism.phosphotransfer and pyrophosphatases.nucleoside diphosphate kinase	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2); ATP binding / nucleoside diphosphate kinase Maintains intracellular dNTP levels except ATP. Plays a role in response to oxidative stress and UV. Involved in phytochrome-mediated light signaling. Participates in au
MSGI1_115178	NODE_61513_length_86_cov_46.418606	24.8	13.9	4.3	3.4	0	0	2.5	0	cell wall.pectin*esterases.PME	ATPME1 (Arabidopsis thaliana pectin methylesterase 1); pectinesterase encodes a pectin methylesterase Identical to Pectinesterase-1 precursor (EC 3.1.1.11) (Pectin methylesterase 1) (PE 1) (PME1) [Arabidopsis Thaliana] (GB:Q43867); similar to pectinester
MSGI1_15473	NODE_61562_length_591_cov_12.548223	9	21	32.8	15.6	0	0	-1.9	0	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS9 (Arabidopsis thaliana trehalose-phosphatase/synthase 9); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that"
MSGI1_100040	NODE_61564_length_133_cov_9.150376	9.5	19.2	41.1	18.9	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_15827	NODE_61574_length_582_cov_9.621993	5.3	25.7	9.2	9.6	2.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_63307	NODE_61577_length_199_cov_24.778894	25.9	2.2	6.3	1	-3.6	0	2	0	secondary metabolism.flavonoids.anthocyanins.leucocyanidin oxygenase	"LDOX (TANNIN DEFICIENT SEED 4) encodes leucoanthocyanidin dioxygenase, which is involved in proanthocyanin biosynthesis. Mutant analysis suggests that this gene is also involved in vacuole formation. Identical to Leucoanthocyanidin dioxygenase (EC 1.14.1"
MSGI1_107413	NODE_61598_length_125_cov_8.568000	20	9.1	1.6	7.8	0	0	3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_67889	NODE_61609_length_187_cov_13.010695	13.5	14	0	0	0	0	4.8	4.8	not assigned.unknown	not assigned.unknown
MSGI1_32641	NODE_6163_length_345_cov_42.982609	26.1	17.9	103.9	16.9	0	-2.6	-2	0	stress.abiotic.drought/salt	ERD4 (EARLY-RESPONSIVE TO DEHYDRATION 4)  similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT1G32090.1); similar to Os07g0150100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058898.1); sim
MSGI1_119865	NODE_61652_length_61_cov_6.540984	0	4.5	0	18.9	0	5.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_63306	NODE_6166_length_199_cov_8.502513	9.7	15.7	0.2	0	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_82820	NODE_61667_length_157_cov_11.980892	0.2	11.5	0.7	7.8	5.8	0	0	0	hormone metabolism.ethylene.synthesis-degradation	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT5G59530.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain ATPase, F1/V1/A1 com"
MSGI1_119861	NODE_61719_length_61_cov_10.721312	18.3	21.2	56.6	24.7	0	-1.2	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_102724	NODE_6176_length_130_cov_127.892311	108.5	58.7	24.7	25.2	0	0	2.1	1.2	amino acid metabolism.synthesis.serine-glycine-cysteine group.glycine.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_102724	NODE_6176_length_130_cov_127.892311	108.5	58.7	24.7	25.2	0	0	2.1	1.2	PS.photorespiration.serine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_102724	NODE_6176_length_130_cov_127.892311	108.5	58.7	24.7	25.2	0	0	2.1	1.2	C1-metabolism.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_112495	NODE_61764_length_109_cov_58.366974	24	5.2	8.9	9.5	-2.2	0	0	0	redox.ascorbate and glutathione.ascorbate	"APX4 (ASCORBATE PEROXIDASE 4); peroxidase Encodes a microsomal ascorbate peroxidase APX4.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, A"
MSGI1_27735	NODE_6180_length_393_cov_12.788804	0.4	0.6	25.5	6.3	0	-2	-6	0	secondary metabolism.flavonoids.dihydroflavonols	"CYP82C2 (cytochrome P450, family 82, subfamily C, polypeptide 2); oxygen binding member of CYP82C similar to CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31950.1); similar to CYP82C4 (c"
MSGI1_27735	NODE_6180_length_393_cov_12.788804	0.4	0.6	25.5	6.3	0	-2	-6	0	misc.cytochrome P450	"CYP82C2 (cytochrome P450, family 82, subfamily C, polypeptide 2); oxygen binding member of CYP82C similar to CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31950.1); similar to CYP82C4 (c"
MSGI1_93735	NODE_61809_length_141_cov_8.042553	4.8	10.8	75.3	9.4	0	-3	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_50147	NODE_61810_length_245_cov_11.718368	8	34.1	15	29.9	2.1	0	0	0	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G09970.1); similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine ki"
MSGI1_50147	NODE_61810_length_245_cov_11.718368	8	34.1	15	29.9	2.1	0	0	0	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G09970.1); similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine ki"
MSGI1_119854	NODE_61816_length_61_cov_24.573771	17.7	13.5	1.2	0.8	0	0	3.9	4.1	not assigned.unknown	not assigned.unknown
MSGI1_8030	NODE_6183_length_855_cov_69.133331	59.6	27.9	32.4	14.1	-1.1	0	0	0	RNA.regulation of transcription.Aux/IAA family	ATAUX2-11 (indoleacetic acid-induced protein 4); transcription factor Auxin inducible protein similar to transcription factors. Identical to Auxin-responsive protein IAA4 (Indoleacetic acid-induced protein 4) (Auxin-induced protein AUX2-11) (IAA4) [Arabi
MSGI1_8030	NODE_6183_length_855_cov_69.133331	59.6	27.9	32.4	14.1	-1.1	0	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	ATAUX2-11 (indoleacetic acid-induced protein 4); transcription factor Auxin inducible protein similar to transcription factors. Identical to Auxin-responsive protein IAA4 (Indoleacetic acid-induced protein 4) (Auxin-induced protein AUX2-11) (IAA4) [Arabi
MSGI1_20826	NODE_61851_length_487_cov_12.558521	16.9	19.4	0	0	0	0	5.1	5.3	not assigned.unknown	not assigned.unknown
MSGI1_117818	NODE_6187_length_64_cov_53.171875	0	0.2	14.4	19.3	0	0	-4.8	-6.6	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_117818	NODE_6187_length_64_cov_53.171875	0	0.2	14.4	19.3	0	0	-4.8	-6.6	major CHO metabolism.degradation.sucrose.Susy	"SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups Encodes a protein with sucrose synthase activity (SUS4). similar to SUS1 (SUCROSE SYNTHASE 1), UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TA"
MSGI1_119845	NODE_61879_length_61_cov_9.196721	0	18.2	4.4	51.9	5.2	3.6	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_88684	NODE_619_length_148_cov_7.000000	0.4	0.5	14	15.4	0	0	-5.1	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_104543	NODE_61908_length_128_cov_45.562500	31.5	18.2	7.5	8	0	0	2.1	0	RNA.regulation of transcription.putative transcription regulator	"PCNA2 (PROLIFERATING CELL NUCLEAR 2); DNA binding / DNA polymerase processivity factor  Identical to Proliferating cell nuclear antigen 2 (PCNA 2) [Arabidopsis Thaliana] (GB:Q9ZW35); similar to PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN), DNA binding"
MSGI1_119843	NODE_61911_length_61_cov_17.934425	11.6	17.8	0.8	0.4	0	0	3.9	5.5	cell. vesicle transport	"oxysterol-binding family protein  similar to UNE18 (unfertilized embryo sac 18), oxysterol binding [Arabidopsis thaliana] (TAIR:AT5G02100.1); similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT5G59420.1); similar to Os03g0274000 ["
MSGI1_40467	NODE_61949_length_292_cov_10.729452	7.4	28.5	5.9	9.5	1.9	0	0	0	signalling.receptor kinases.leucine rich repeat XI	"CLV1 (CLAVATA 1); ATP binding / kinase/ protein serine/threonine kinase Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negat"
MSGI1_40467	NODE_61949_length_292_cov_10.729452	7.4	28.5	5.9	9.5	1.9	0	0	0	cell wall	"CLV1 (CLAVATA 1); ATP binding / kinase/ protein serine/threonine kinase Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negat"
MSGI1_112121	NODE_61951_length_112_cov_17.821428	4.4	15	0.6	0	0	0	0	4.9	misc.misc2	"formamidase, putative / formamide amidohydrolase, putative  similar to formamidase, putative / formamide amidohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G37550.1); similar to Os01g0764900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044346"
MSGI1_68286	NODE_61953_length_186_cov_29.161291	108.7	37.1	39.1	29.4	-1.6	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_78167	NODE_61957_length_165_cov_18.878788	4.4	21.4	6.7	7.8	2.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_102721	NODE_61962_length_130_cov_7.338461	7.5	13.7	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_116079	NODE_61973_length_78_cov_12.102564	9.8	11.5	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_115630	NODE_61980_length_82_cov_39.646343	34.3	25	109	8.1	0	-3.8	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_105462	NODE_61983_length_127_cov_9.858268	11.1	9	0	0	0	0	4.5	0	DNA.synthesis/chromatin structure	PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3); DNA binding  similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G31400.1); similar to putative chloroplast RNA processing protein [Oryza sativa (japonica cultivar-group)]
MSGI1_116675	NODE_61994_length_73_cov_23.054794	16.8	8	0.7	0.8	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_94498	NODE_6201_length_140_cov_17.285715	0.1	0	20.5	27.9	0	0	-7.7	-5.8	protein.synthesis.misc ribososomal protein	"40S ribosomal protein S15 (RPS15D)  Identical to 40S ribosomal protein S15-4 (RPS15D) [Arabidopsis Thaliana] (GB:Q9FY64); Identical to 40S ribosomal protein S15-1 (RPS15A) [Arabidopsis Thaliana] (GB:Q08112); similar to RPS15 (RIBOSOMAL PROTEIN S15), stru"
MSGI1_50374	NODE_62046_length_244_cov_17.389345	5.7	23.5	3.5	12.3	2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_73201	NODE_6205_length_175_cov_7.548572	4.6	16.4	9.3	34.5	0	1.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_65840	NODE_62055_length_192_cov_5.031250	5.8	11.1	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_98379	NODE_62069_length_135_cov_22.103704	22.4	52.3	26.8	28.7	1.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_97601	NODE_6209_length_136_cov_11.683824	1.4	13.7	17.8	8.7	3.3	0	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_63305	NODE_62093_length_199_cov_18.216080	4.5	21.2	6.3	12.9	2.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_79881	NODE_6210_length_162_cov_205.160492	116.1	66.5	52.8	96.8	0	0	1.1	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S29 (RPS29C)  Identical to 40S ribosomal protein S29 (RPS29C) [Arabidopsis Thaliana] (GB:Q680P8;GB:Q9LDT9); similar to 40S ribosomal protein S29 (RPS29B) [Arabidopsis thaliana] (TAIR:AT3G44010.1); similar to 40S ribosomal protein S29
MSGI1_92942	NODE_62119_length_142_cov_4.401409	1.5	4.2	15.1	2	0	0	-3.3	0	transport.potassium	potassium channel tetramerisation domain-containing protein  similar to potassium channel tetramerisation domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G30940.1); similar to BTB/POZ [Medicago truncatula] (GB:ABE85429.1); contains InterPro doma
MSGI1_79267	NODE_62133_length_163_cov_14.797546	19.8	8.8	3.3	8.1	0	0	2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_61175	NODE_62164_length_205_cov_12.146341	14.5	16.4	0	0	0	0	4.9	5	not assigned.unknown	not assigned.unknown
MSGI1_56329	NODE_62176_length_221_cov_7.389140	15.2	1.7	19.1	8.5	-3.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_31579	NODE_622_length_354_cov_87.053673	23.2	38.3	23.2	63.8	0	1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_116523	NODE_62218_length_74_cov_13.648648	12.8	8	0	0	0	0	4.7	0	secondary metabolism.simple phenols	"LAC5 (laccase 5); copper ion binding / oxidoreductase putative laccase, a member of laccase family of genes (17 members in Arabidopsis). similar to LAC3 (laccase 3), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G30210.1); similar t"
MSGI1_53379	NODE_62222_length_232_cov_9.568966	4.9	10.8	0.2	0.2	0	0	0	5.8	not assigned.unknown	not assigned.unknown
MSGI1_92200	NODE_62252_length_143_cov_7.587412	8.2	7.9	58.6	8.1	0	-2.9	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_85970	NODE_62296_length_152_cov_8.164474	3.8	6.1	44.7	3.8	0	-3.6	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_6542	NODE_6231_length_937_cov_73.754539	52	18.8	31.6	29.3	-1.5	0	0	0	minor CHO metabolism.myo-inositol.inositol phosphatase	"VTC4; 3'(2'),5'-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis similar to inositol monophosphatase family protein [Arabidopsis thaliana] (TAIR:AT1G"
MSGI1_115629	NODE_62327_length_82_cov_18.975609	15.1	15.2	0	0.4	0	0	4.9	5.2	stress.biotic	"ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19); ATPase, coupled to transmembrane movement of substances / auxin efflux transporter Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates"
MSGI1_115629	NODE_62327_length_82_cov_18.975609	15.1	15.2	0	0.4	0	0	4.9	5.2	transport.ABC transporters and multidrug resistance systems	"ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19); ATPase, coupled to transmembrane movement of substances / auxin efflux transporter Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates"
MSGI1_94494	NODE_62341_length_140_cov_7.214286	4.1	5	19.1	0.5	0	-5.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_33152	NODE_62396_length_341_cov_11.539590	3.7	6.3	21.3	3.9	0	-2.4	-2.5	0	transport.ABC transporters and multidrug resistance systems	ABC transporter family protein  Identical to White-brown complex homolog protein 26 (WBC26) [Arabidopsis Thaliana] (GB:Q84TH5;GB:Q949Y4;GB:Q9C8W6); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G31770.1); similar to ABC transp
MSGI1_88683	NODE_6241_length_148_cov_56.209461	25.7	15.4	135.3	24.7	0	-2.5	-2.4	0	stress.abiotic.drought/salt	ERD4 (EARLY-RESPONSIVE TO DEHYDRATION 4)  similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT1G32090.1); similar to Os07g0150100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058898.1); sim
MSGI1_49397	NODE_6247_length_248_cov_53.935482	36	85.5	82.5	35.3	1.2	-1.2	-1.2	1.3	not assigned.unknown	not assigned.unknown
MSGI1_107406	NODE_62492_length_125_cov_9.672000	6.1	6.6	16.2	1.3	0	-3.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_111772	NODE_62508_length_115_cov_10.304348	13.9	10.1	0	0	0	0	4.8	0	glycolysis.pyrophosphate-fructose-6-P phosphotransferase	"MEE51 (maternal effect embryo arrest 51); diphosphate-fructose-6-phosphate 1-phosphotransferase  similar to pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative [Ar"
MSGI1_19818	NODE_6256_length_508_cov_47.732285	22	5	8.5	4.6	-2.1	0	0	0	cell wall	"peroxidase 30 (PER30) (P30) (PRXR9)  Identical to Peroxidase 30 precursor (EC 1.11.1.7) (Atperox P30) (PRXR9) (ATP7a) (PER30) [Arabidopsis Thaliana] (GB:Q9LSY7;GB:Q43737;GB:Q96521); similar to RCI3 (RARE COLD INDUCIBLE GENE 3), peroxidase [Arabidopsis th"
MSGI1_19818	NODE_6256_length_508_cov_47.732285	22	5	8.5	4.6	-2.1	0	0	0	misc.peroxidases	"peroxidase 30 (PER30) (P30) (PRXR9)  Identical to Peroxidase 30 precursor (EC 1.11.1.7) (Atperox P30) (PRXR9) (ATP7a) (PER30) [Arabidopsis Thaliana] (GB:Q9LSY7;GB:Q43737;GB:Q96521); similar to RCI3 (RARE COLD INDUCIBLE GENE 3), peroxidase [Arabidopsis th"
MSGI1_77625	NODE_6258_length_166_cov_29.313253	36.8	12.3	12.9	17.5	-1.6	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_10009	NODE_6261_length_761_cov_87.915901	19.6	11	48.8	3.5	0	-3.8	-1.3	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1)"
MSGI1_10009	NODE_6261_length_761_cov_87.915901	19.6	11	48.8	3.5	0	-3.8	-1.3	0	"misc.gluco-, galacto- and mannosidases"	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1)"
MSGI1_119807	NODE_62611_length_61_cov_35.081966	4.3	22.3	4	7.8	2.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_68690	NODE_62616_length_185_cov_5.989189	3.2	6.3	24.2	2.8	0	-3.1	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_86640	NODE_62638_length_151_cov_5.602649	6	6.4	28	7.3	0	-1.9	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_100962	NODE_62656_length_132_cov_13.522727	3.2	13.8	29.2	4.9	0	-2.6	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_109425	NODE_62699_length_123_cov_9.365853	4.9	10.1	31.1	11.2	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_78163	NODE_6274_length_165_cov_14.006061	2.4	4.8	36.2	13.6	0	0	-3.9	0	misc.cytochrome P450	"CYP71B37 (cytochrome P450, family 71, subfamily B, polypeptide 37); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B37 (EC 1.14.-.-) (CYP71B37) [Arabidopsis Thaliana] (GB:Q9LIP3); similar to CYP71B36 (cytochrome P450, family 71, s"
MSGI1_50851	NODE_62768_length_242_cov_11.983471	37.7	12.3	16.8	9.2	-1.6	0	0	0	transport.unspecified cations	HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1); sodium ion transporter encodes a sodium transporter (HKT1) expressed in the phloem. Mutants over-accumulate sodium in shoot tissue and have reduced sodium in phloem sap and roots. Identical to Sodium transporter HKT
MSGI1_119804	NODE_62805_length_61_cov_12.836065	12.1	7.4	0	0	0	0	4.6	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	PAL3 (PHENYL ALANINE AMMONIA-LYASE 3); phenylalanine ammonia-lyase Member of Phenylalanine ammonialyase (PAL) gene family.Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genes Identical to Phenylalanine ammonia-lyase 3 (EC 4.3.1.5)
MSGI1_93729	NODE_62834_length_141_cov_5.943263	5.3	3.4	1221.2	9.4	0	-7	-7.8	0	not assigned.unknown	not assigned.unknown
MSGI1_32994	NODE_6284_length_342_cov_157.131577	107.1	53.2	116.7	25.2	-1	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_73195	NODE_62843_length_175_cov_5.280000	1.8	6.4	15.5	13.2	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_119802	NODE_62922_length_61_cov_11.098361	3.5	5.4	29.9	6.2	0	-2.3	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_85337	NODE_62940_length_153_cov_6.980392	5.8	4.2	4.1	21.3	0	2.4	0	-2.3	amino acid metabolism.degradation.glutamate family.proline	"proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative  similar to ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5, PROLINE OXIDASE), proline dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G30775.1); similar to proline dehydrogenase"
MSGI1_63301	NODE_62946_length_199_cov_18.371859	3.4	19.8	23.9	31.8	2.5	0	-2.8	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1); hydrolase, hydrolyzing O-glycosyl compounds  Identical to Probable glycosyltransferase At1g55740 (EC 2.4.1.-) [Arabidopsis Thaliana] (GB:Q84VX0;GB:Q9LFZ7); similar to ATSIP2 (ARABIDOPSIS THALIANA SEED IMBI"
MSGI1_85336	NODE_62955_length_153_cov_30.732027	15.2	9.4	0	0.2	0	0	4.9	0	amino acid metabolism.synthesis.aspartate family.lysine.LL-diaminopimelic acid aminotransferase	"AGD2 (ABERRANT GROWTH AND DEATH 2); transaminase Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on ch"
MSGI1_112756	NODE_6297_length_107_cov_193.401871	70.9	145	80.1	114.8	1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_119801	NODE_6298_length_61_cov_48.786884	23.1	59.5	71.8	72.1	1.4	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_116274	NODE_6299_length_76_cov_75.184212	27.9	71.8	77.9	99.8	1.4	0	-1.5	0	RNA.regulation of transcription.bZIP transcription factor family	GBF6 (G-box binding factor 6); DNA binding / transcription factor Encodes a basic domain leucine zipper (bZip) transcription factor. similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G75390.1); similar to cAMP response e
MSGI1_106428	NODE_62997_length_126_cov_3.253968	18.4	1.6	5.5	1.1	-3.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_119799	NODE_6300_length_61_cov_66.721313	26.5	12.2	37.9	3.3	0	-3.5	0	0	transport.metal	CAX3 (cation exchanger 3); cation:cation antiporter  Identical to Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger 3) (Ca(2+)/H(+) antiporter CAX3) (CAX3) [Arabidopsis Thaliana] (GB:Q93Z81;GB:O65022;GB:Q0WUY4;GB:Q9LKW8); similar to CAX1 (CATION
MSGI1_119799	NODE_6300_length_61_cov_66.721313	26.5	12.2	37.9	3.3	0	-3.5	0	0	transport.calcium	CAX3 (cation exchanger 3); cation:cation antiporter  Identical to Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger 3) (Ca(2+)/H(+) antiporter CAX3) (CAX3) [Arabidopsis Thaliana] (GB:Q93Z81;GB:O65022;GB:Q0WUY4;GB:Q9LKW8); similar to CAX1 (CATION
MSGI1_105452	NODE_6303_length_127_cov_332.023621	76.9	39.7	31.2	38.9	0	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_62937	NODE_63034_length_200_cov_8.770000	7.9	10.6	0.4	0.4	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_84045	NODE_63061_length_155_cov_6.200000	7.1	8.9	123.8	1.2	0	-6.7	-4.1	0	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN1 (DARK INDUCIBLE 6) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumul"
MSGI1_115827	NODE_63104_length_80_cov_32.700001	70	22	28.3	18.9	-1.7	0	1.3	0	cell wall	"peroxidase, putative  Identical to Peroxidase 16 precursor (EC 1.11.1.7) (Atperox P16) (ATP22a) (PER16) [Arabidopsis Thaliana] (GB:Q96518); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G30170.1); similar to Haem peroxidase, plant/funga"
MSGI1_115827	NODE_63104_length_80_cov_32.700001	70	22	28.3	18.9	-1.7	0	1.3	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 16 precursor (EC 1.11.1.7) (Atperox P16) (ATP22a) (PER16) [Arabidopsis Thaliana] (GB:Q96518); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G30170.1); similar to Haem peroxidase, plant/funga"
MSGI1_114234	NODE_63117_length_95_cov_24.400000	73.5	19.2	6.9	11.3	-1.9	0	3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_91490	NODE_6312_length_144_cov_7.430555	0	0.3	21.1	16.9	0	0	-5.4	-5.8	not assigned.unknown	not assigned.unknown
MSGI1_50612	NODE_63121_length_243_cov_10.987655	1	12.7	0.3	3.1	3.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_78161	NODE_6313_length_165_cov_9.478787	19.1	4.7	3.9	2.7	0	0	2.3	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_113475	NODE_63169_length_102_cov_17.068628	6.3	11.3	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_66622	NODE_6320_length_190_cov_26.205263	16.2	18.9	35.2	8.2	0	-2.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_103624	NODE_63255_length_129_cov_41.775192	8.4	39.7	13	4.7	2.2	0	0	3.1	not assigned.unknown	not assigned.unknown
MSGI1_110438	NODE_63260_length_122_cov_22.008196	2.5	14.1	19.6	11	0	0	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_110437	NODE_63261_length_122_cov_16.344263	3.5	13.4	28.6	10.1	0	0	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_103623	NODE_63268_length_129_cov_18.511627	6.3	10.9	42.7	4.5	0	-3.2	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_113129	NODE_63325_length_104_cov_20.961538	9.5	16.4	0	0	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_111060	NODE_63330_length_121_cov_9.950413	4.7	8.8	45.9	30.8	0	0	-3.3	-1.8	protein.degradation.serine protease	"serpin, putative / serine protease inhibitor, putative  similar to serpin, putative / serine protease inhibitor, putative [Arabidopsis thaliana] (TAIR:AT3G45220.1); similar to serpin-like protein [Citrus x paradisi] (GB:AAN76362.1); contains InterPro dom"
MSGI1_111060	NODE_63330_length_121_cov_9.950413	4.7	8.8	45.9	30.8	0	0	-3.3	-1.8	stress.biotic	"serpin, putative / serine protease inhibitor, putative  similar to serpin, putative / serine protease inhibitor, putative [Arabidopsis thaliana] (TAIR:AT3G45220.1); similar to serpin-like protein [Citrus x paradisi] (GB:AAN76362.1); contains InterPro dom"
MSGI1_93726	NODE_63354_length_141_cov_7.815603	1.9	13.6	1	0.7	0	0	0	4.3	not assigned.unknown	not assigned.unknown
MSGI1_71806	NODE_63357_length_178_cov_17.432585	3.5	1.3	945.3	6.3	0	-7.2	-8.1	0	not assigned.unknown	not assigned.unknown
MSGI1_106425	NODE_6336_length_126_cov_9.404762	0	0.2	19.5	20.9	0	0	-5.3	-6.7	not assigned.unknown	not assigned.unknown
MSGI1_42339	NODE_63365_length_282_cov_21.099291	10.1	12.8	34.5	20.3	0	0	-1.8	0	stress.biotic	avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24390.1); similar to Os06g0702700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058493.1); similar to h
MSGI1_117190	NODE_6337_length_69_cov_112.579712	27.8	70.7	24.7	21.3	1.3	0	0	1.7	not assigned.unknown	not assigned.unknown
MSGI1_104529	NODE_63375_length_128_cov_102.156250	31.1	74.7	9.8	11.9	1.3	0	1.7	2.7	not assigned.unknown	not assigned.unknown
MSGI1_118122	NODE_63386_length_62_cov_24.919355	35.5	14.6	12.7	15.9	0	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_119787	NODE_6340_length_61_cov_25.114754	12.5	5.2	0.8	1.2	0	0	4	0	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	catalytic/ coenzyme binding  similar to putative NADH:ubiquinone oxidoreductase 39 kDa subunit precursor [Chlamydomonas reinhardtii] (GB:AAQ55458.1); similar to Os02g0816800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048516.1); contains InterPro d
MSGI1_30916	NODE_63422_length_360_cov_12.797222	7.5	30.5	6.5	18	2	0	0	0	cell wall.cellulose synthesis.cellulose synthase	"IRX3 (IRREGULAR XYLEM 3, MURUS 10); cellulose synthase encodes a xylem-specific cellulose synthase Identical to Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) (CESA7) [Arabidopsis Thal"
MSGI1_48753	NODE_63424_length_251_cov_4.302789	4.8	13.9	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_77622	NODE_6346_length_166_cov_124.301208	69.9	0.4	7.3	2	-7.4	0	3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_95233	NODE_63481_length_139_cov_86.474823	77.3	39.4	33.8	47.1	0	0	1.2	0	amino acid metabolism.synthesis.serine-glycine-cysteine group.glycine.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_95233	NODE_63481_length_139_cov_86.474823	77.3	39.4	33.8	47.1	0	0	1.2	0	PS.photorespiration.serine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_95233	NODE_63481_length_139_cov_86.474823	77.3	39.4	33.8	47.1	0	0	1.2	0	C1-metabolism.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_92189	NODE_63493_length_143_cov_3.447552	2.6	3.1	11	0	0	-4.5	0	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. similar to RAP2.4 (relate"
MSGI1_79872	NODE_63506_length_162_cov_16.450617	8.7	17.4	0.4	0	0	0	0	5.1	not assigned.unknown	not assigned.unknown
MSGI1_86636	NODE_63515_length_151_cov_15.205298	3.1	14.3	0.2	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_37925	NODE_63528_length_307_cov_15.596091	2	19.3	4.1	7.7	3.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_90021	NODE_6353_length_146_cov_48.773972	70.5	29.6	100.7	59.9	-1.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_81594	NODE_63544_length_159_cov_6.459119	1.8	4.8	14.8	9.1	0	0	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_76079	NODE_63555_length_169_cov_5.704142	1.2	6.1	19.2	4.8	0	0	-4	0	stress.abiotic.heat	"HSP70B (heat shock protein 70B); ATP binding  similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR:AT3G12580.1); similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); s"
MSGI1_78155	NODE_6358_length_165_cov_8.242424	11.3	0.4	0.6	0	-4.8	0	4.2	0	transport.amino acids	amino acid transporter family protein  similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT3G54830.1); similar to Os02g0101000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045585.1); similar to Amino acid/polyamine trans
MSGI1_119776	NODE_63586_length_61_cov_19.655737	14.4	16.9	0	0	0	0	4.8	5.1	protein.degradation.subtilases	"SLP2 (subtilisin-like serine protease 2); subtilase Serine protease similar to subtilisin. similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to su"
MSGI1_119776	NODE_63586_length_61_cov_19.655737	14.4	16.9	0	0	0	0	4.8	5.1	cell wall	"SLP2 (subtilisin-like serine protease 2); subtilase Serine protease similar to subtilisin. similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to su"
MSGI1_119775	NODE_63588_length_61_cov_10.459017	30.8	37.9	10.8	12.4	0	0	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_101805	NODE_6359_length_131_cov_6.908397	1.5	0.7	16.2	1	0	-4	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_40995	NODE_63591_length_289_cov_10.325259	20	15	4.3	4.4	0	0	2.2	0	misc.UDP glucosyl and glucoronyl transferases	exostosin family protein  similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT3G45400.1); similar to secondary cell wall-related glycosyltransferase family 47 [Populus tremula x Populus tremuloides] (GB:AAX33321.1); contains InterPro domain
MSGI1_75585	NODE_63626_length_170_cov_8.505882	3.8	1.8	1291.8	5.9	0	-7.8	-8.4	0	not assigned.unknown	not assigned.unknown
MSGI1_18748	NODE_63635_length_526_cov_33.865021	22.4	17.8	4.3	9.7	0	0	2.4	0	stress.biotic	"thaumatin, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G24180.1); similar to Thaumatin, pathogenesis-related [Medicago truncatula] (GB:ABE77922.1); similar to Os03g0243900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049531"
MSGI1_93721	NODE_6365_length_141_cov_24.368793	0	0	41.6	17.6	0	0	-6.4	-5.1	major CHO metabolism.degradation.starch.starch cleavage	"BMY3 (beta-amylase 3); beta-amylase putative beta-amylase BMY3 (BMY3) similar to CT-BMY (BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to beta-amylase [Glycine max] (GB:CAI39245.1); contains InterPro domain Glycoside hy"
MSGI1_119769	NODE_63652_length_61_cov_8.344262	0.4	5.4	24.3	3.3	0	-2.9	-5.9	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP2 (ARABIDOPSIS THALIANA SEED IMBIBITION 2); hydrolase, hydrolyzing O-glycosyl compounds  similar to ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G55740.1); similar to DI"
MSGI1_61536	NODE_63659_length_204_cov_4.421568	6.6	5.4	15.7	0.4	0	-5.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_69116	NODE_63661_length_184_cov_8.646739	9.8	11.9	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_119762	NODE_63686_length_61_cov_29.704918	12.3	8.6	0	0	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_54719	NODE_6369_length_227_cov_4.933921	4.8	6.8	20.6	4.2	0	-2.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_112492	NODE_63707_length_109_cov_8.055046	7.5	25.3	0.3	0	0	0	0	5.7	RNA.regulation of transcription.GRAS transcription factor family	scarecrow-like transcription factor 14 (SCL14)  similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G29060.1); similar to SCARECROW-like protein [Lilium lon (GB:BAC77269.2); contains InterPro domain GRAS transcription
MSGI1_63296	NODE_6375_length_199_cov_66.090454	82.8	45.7	15.7	52.8	0	1.7	2.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L4/L1 (RPL4D)  Identical to 60S ribosomal protein L4-2 (L1) (RPL4D) [Arabidopsis Thaliana] (GB:P49691;GB:Q9LYZ8); similar to 60S ribosomal protein L4/L1 (RPL4A) [Arabidopsis thaliana] (TAIR:AT3G09630.1); similar to putative 60S ribo
MSGI1_4938	NODE_6376_length_1066_cov_17.523453	4.6	22	3.2	2.3	2.3	0	0	3.3	hormone metabolism.auxin.induced-regulated-responsive-activated	"similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G64600.1); similar to putative auxin-independent growth promoter [Oryza sativa (japonica cultivar-group)] (GB:BAD37235.1); contains InterPro domain Protein of unknown function DUF246, plant; (I"
MSGI1_117042	NODE_63761_length_70_cov_19.799999	10.9	12.4	0	0	0	0	4.4	4.6	not assigned.unknown	not assigned.unknown
MSGI1_46204	NODE_63765_length_263_cov_9.152091	15.1	1.8	1.6	1.7	-3.1	0	3.2	0	cell wall.modification	"ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1) member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-B1 precursor (AtEXPB1) (At-EXPB1) (Beta-expansin-1) (Ath- ExpBeta-1.5) (EXPB1)"
MSGI1_41933	NODE_6377_length_284_cov_40.014084	18.1	12.3	0.7	0.9	0	0	4.7	3.8	amino acid metabolism.synthesis.aspartate family.lysine.LL-diaminopimelic acid aminotransferase	"AGD2 (ABERRANT GROWTH AND DEATH 2); transaminase Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on ch"
MSGI1_23874	NODE_6378_length_442_cov_22.608597	2.2	10.8	18.2	10	0	0	-3	0	protein.degradation.ubiquitin.E3.SCF.FBOX	kelch repeat-containing F-box family protein  similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G15670.1); similar to kelch repeat-containing F-box-like [Oryza sativa (japonica cultivar-group)] (GB:BAD25000.1); conta
MSGI1_54148	NODE_63788_length_229_cov_9.030568	6.1	47.1	18.1	58.8	2.9	1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_69114	NODE_6380_length_184_cov_249.858688	128.9	73.8	38.8	69	0	0	1.7	0	protein.synthesis.misc ribososomal protein	"RPL16B (ribosomal protein L16B); structural constituent of ribosome encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root and shoot apical meristems and in lateral root primordia. Expr"
MSGI1_15711	NODE_6384_length_585_cov_59.924786	49.3	36.3	14.5	36	0	0	1.8	0	RNA.processing	"small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative  similar to SMD3 (SNRNP CORE PROTEIN SMD3) [Arabidopsis thaliana] (TAIR:AT1G76300.1); similar to Os02g0102700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045599.1);"
MSGI1_112268	NODE_63862_length_111_cov_18.153152	12.9	4.2	1.1	2.6	0	0	3.6	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"glycosyl hydrolase family 3 protein  similar to BXL1 (BETA-XYLOSIDASE 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G49360.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G10560.1); sim"
MSGI1_108365	NODE_63866_length_124_cov_23.354839	9.4	13.1	0.8	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_76078	NODE_63874_length_169_cov_6.218935	17.5	2.8	11	3.7	-2.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_20936	NODE_6388_length_485_cov_72.004128	83.3	43.9	6.2	14.1	0	0	3.7	1.6	not assigned.unknown	not assigned.unknown
MSGI1_48116	NODE_6389_length_254_cov_7.074803	3.2	1.7	16.9	2.1	0	-3	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_48116	NODE_6389_length_254_cov_7.074803	3.2	1.7	16.9	2.1	0	-3	0	0	development.unspecified	nodulin MtN21 family protein  similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT4G28040.4); similar to putative MtN21 [Oryza sativa (japonica cultivar-group)] (GB:BAD33614.1); similar to Os09g0426500 [Oryza sativa (japonica cultivar-
MSGI1_36242	NODE_63892_length_318_cov_7.773585	4.1	16.3	22.7	8.3	0	0	-2.5	0	minor CHO metabolism.trehalose.TPP	"trehalose-6-phosphate phosphatase, putative  similar to trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT2G22190.1); similar to 117M18_9 [Brassica rapa] (GB:AAZ66928.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains I"
MSGI1_45069	NODE_63896_length_268_cov_3.966418	5.9	2.3	12.4	0.9	0	-3.8	0	0	minor CHO metabolism.myo-inositol.myo inositol oxygenases	MIOX1 (MYO-INISITOL OXYGENASE); oxidoreductase Encodes MIOX1.  Belongs to  myo-inositol oxygenase gene family. Identical to Inositol oxygenase 1 (EC 1.13.99.1) (Myo-inositol oxygenase 1) (AtMIOX1) (MIOX1) [Arabidopsis Thaliana] (GB:Q8L799;GB:Q8GXC4;GB:Q9M
MSGI1_33917	NODE_6390_length_335_cov_25.677612	19.1	19	0	0	0	0	5.3	5.2	not assigned.unknown	not assigned.unknown
MSGI1_29998	NODE_6390_length_369_cov_38.336044	138.6	92.6	46.5	104.3	0	1.2	1.6	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S17 (RPS17A)  Identical to 40S ribosomal protein S17-1 (RPS17A) [Arabidopsis Thaliana] (GB:P49205;GB:Q9SJD0); similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT5G04800.4); similar to 40S ribosomal protein S
MSGI1_41342	NODE_63930_length_287_cov_8.919861	4.4	11.2	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_71801	NODE_63935_length_178_cov_8.679775	11	17.2	0.2	0	0	0	5.8	5.1	not assigned.unknown	not assigned.unknown
MSGI1_60823	NODE_63946_length_206_cov_13.325243	10.5	13.2	0	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_31384	NODE_63966_length_356_cov_31.494383	37.9	40.7	0.1	0	0	0	8.6	6.3	not assigned.unknown	not assigned.unknown
MSGI1_70469	NODE_6397_length_181_cov_232.585632	80.3	49.3	6.4	17.2	0	0	3.6	1.5	protein.synthesis.misc ribososomal protein	"RPL27A (RIBOSOMAL PROTEIN L27A); structural constituent of ribosome Encodes a ribosomal protein L27A, a constituent of the large subunit of the ribosomal complex.  Regulated by TCP20. Identical to 60S ribosomal protein L27a-2 (RPL27AB) [Arabidopsis Thali"
MSGI1_119745	NODE_63970_length_61_cov_69.737701	24.6	17.3	82.6	7	0	-3.6	-1.7	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT3G52840.1)"
MSGI1_119745	NODE_63970_length_61_cov_69.737701	24.6	17.3	82.6	7	0	-3.6	-1.7	0	"misc.gluco-, galacto- and mannosidases"	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT3G52840.1)"
MSGI1_119744	NODE_63982_length_61_cov_33.590164	12.1	15.3	0	0.4	0	0	4.6	5.3	amino acid metabolism.synthesis.aspartate family.methionine.methionine synthase	"AtMS2 (Arabidopsis thaliana methionine synthase 2); 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase Encodes a cytosolic methionine synthase, involved in methionine regeneration via the activated methyl cycle (or SAM cycle) similar"
MSGI1_97583	NODE_64016_length_136_cov_20.683823	7.3	11.8	0	0	0	0	0	4.6	cell.organisation	ankyrin repeat family protein  similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT3G09550.1); similar to Os03g0281000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049740.1); similar to Os01g0837000 [Oryza sativa (japonica culti
MSGI1_117676	NODE_64039_length_65_cov_43.461540	6.9	11.8	0.4	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_40275	NODE_6405_length_293_cov_29.409555	19	35.6	5.5	8.5	0	0	0	2.1	transport.metal	"ZIP4 (ZINC TRANSPORTER 4 PRECURSOR); cation transporter A member of Zrt- and Irt-related protein (ZIP) family.  transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficien"
MSGI1_41549	NODE_6407_length_286_cov_25.171329	11.4	7.6	0	0	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_33288	NODE_6407_length_340_cov_49.258823	4.1	20.3	1	4	2.3	0	0	2.3	not assigned.unknown	not assigned.unknown
MSGI1_82807	NODE_6409_length_157_cov_23.044586	7.2	13.6	19.2	37.3	0	0	0	-1.5	cell.organisation	"similar to ATMAP65-6, microtubule binding [Arabidopsis thaliana] (TAIR:AT2G01910.1); similar to putative microtubule-associated protein MAP65-1a [Oryza sativa (japonica cultivar-group)] (GB:BAD37971.1); contains InterPro domain MAP65/ASE1; (InterPro:IP"
MSGI1_26312	NODE_6410_length_410_cov_78.229271	14.9	13.2	103.6	26.9	0	-1.9	-2.8	0	protein.degradation.aspartate protease	aspartyl protease family protein  similar to pepsin A [Arabidopsis thaliana] (TAIR:AT1G62290.2); similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT4G04460.1); similar to aspartic protease (GB:AAB03108.1); similar to Aspartic prot
MSGI1_14916	NODE_6413_length_606_cov_12.425742	1.7	0.5	32.2	3.1	0	-3.4	-4.2	0	cell wall	"ATLP-3 (Arabidopsis thaumatin-like protein 3) encodes a PR5-like protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75050.1); similar to SCUTL2 [Vitis vinifera] (GB:AAF06347.1); contains InterPro domain Thaumatin, pathogenesis-related; ("
MSGI1_14916	NODE_6413_length_606_cov_12.425742	1.7	0.5	32.2	3.1	0	-3.4	-4.2	0	stress.biotic	"ATLP-3 (Arabidopsis thaumatin-like protein 3) encodes a PR5-like protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75050.1); similar to SCUTL2 [Vitis vinifera] (GB:AAF06347.1); contains InterPro domain Thaumatin, pathogenesis-related; ("
MSGI1_95229	NODE_64159_length_139_cov_37.683453	14.5	17.4	1.2	2.8	0	0	3.6	2.6	transport.misc	"permease, putative  Identical to Nucleobase-ascorbate transporter 6 (AtNAT6) (NAT6) [Arabidopsis Thaliana] (GB:Q27GI3;GB:Q3E869;GB:Q94CA7;GB:Q9FM07); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:AT5G49990.1); similar to"
MSGI1_82804	NODE_64190_length_157_cov_4.248408	2.3	4.3	146.3	9	0	-4	-6	0	amino acid metabolism.degradation.aspartate family.methionine.methionine gamma-lyase	"ATMGL; catalytic/ methionine gamma-lyase Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methio"
MSGI1_47219	NODE_6420_length_258_cov_90.240311	101.8	62.3	17.5	8.2	0	0	2.5	2.9	not assigned.unknown	not assigned.unknown
MSGI1_62200	NODE_6421_length_202_cov_51.292080	59.8	54.1	7.9	15.2	0	0	2.9	1.8	not assigned.unknown	not assigned.unknown
MSGI1_78149	NODE_6422_length_165_cov_4.921212	5	8.8	51.2	6.9	0	-2.9	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_32077	NODE_64237_length_350_cov_8.260000	13	0.6	1.2	0	-4.4	0	3.4	0	protein.degradation.aspartate protease	"aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G45120.1); similar to Peptidase aspartic, active site [Medicago truncatula] (GB:ABE80893.1); contains InterPro domain Peptidase A1, pepsin; (Int"
MSGI1_25997	NODE_64242_length_414_cov_24.251207	29.8	48.9	249.9	69.8	0	-1.8	-3.1	0	cell wall	"CYP71B2 (CYTOCHROME P450 71B2); oxygen binding cytochrome P450 monooxygenase Identical to Cytochrome P450 71B2 (EC 1.14.-.-) (CYP71B2) [Arabidopsis Thaliana] (GB:O65788;GB:Q41953;GB:Q8VZK5;GB:Q9SAE2); similar to CYP71B20 (cytochrome P450, family 71, subf"
MSGI1_25997	NODE_64242_length_414_cov_24.251207	29.8	48.9	249.9	69.8	0	-1.8	-3.1	0	misc.cytochrome P450	"CYP71B2 (CYTOCHROME P450 71B2); oxygen binding cytochrome P450 monooxygenase Identical to Cytochrome P450 71B2 (EC 1.14.-.-) (CYP71B2) [Arabidopsis Thaliana] (GB:O65788;GB:Q41953;GB:Q8VZK5;GB:Q9SAE2); similar to CYP71B20 (cytochrome P450, family 71, subf"
MSGI1_72277	NODE_64254_length_177_cov_6.779661	5.4	37.9	0.4	0	2.8	0	0	6.2	not assigned.unknown	not assigned.unknown
MSGI1_75582	NODE_64266_length_170_cov_5.411765	3.3	3.8	23.8	3.7	0	-2.7	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_119724	NODE_64275_length_61_cov_41.180328	17.2	35.6	0	0	0	0	5.1	6.2	not assigned.unknown	not assigned.unknown
MSGI1_45965	NODE_64280_length_264_cov_34.337120	13.4	26.4	59.4	2.9	0	-4.4	-2.1	3.2	not assigned.unknown	not assigned.unknown
MSGI1_119721	NODE_6431_length_61_cov_165.934433	95.7	60.6	0.4	0	0	0	7.9	6.9	glycolysis.glyceraldehyde 3-phosphate dehydrogenase	"GAPC-2; glyceraldehyde-3-phosphate dehydrogenase  similar to GAPC (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT), glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G04120.1); similar to Glyceraldehyde-3-phosphate dehydrogenas"
MSGI1_81000	NODE_64324_length_160_cov_22.206249	19.8	21.8	3.5	6.4	0	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_56853	NODE_6436_length_219_cov_371.808228	201.9	1.3	53.9	2.3	-7.3	-4.6	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_85325	NODE_64368_length_153_cov_5.686275	3.3	4.3	30.9	2.6	0	-3.6	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_36790	NODE_6437_length_314_cov_68.563698	0.9	0.1	68.7	10.9	0	-2.7	-6.3	-6.8	not assigned.unknown	not assigned.unknown
MSGI1_99217	NODE_64401_length_134_cov_9.134328	8.3	7	31.6	8	0	-2	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_84036	NODE_64416_length_155_cov_9.225806	9.8	12.1	0	0.5	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_60200	NODE_6445_length_208_cov_3.711539	19.2	18.3	2.9	5	0	0	2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_35849	NODE_64456_length_321_cov_9.925234	5.5	22.5	36.9	11.4	2	-1.7	-2.7	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. simi"
MSGI1_87317	NODE_6446_length_150_cov_5.593333	0	0	17.3	10.2	0	0	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_119718	NODE_64460_length_61_cov_24.852459	9.9	16.5	0.4	0	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_119717	NODE_64461_length_61_cov_10.918033	3.2	8.5	68.6	43.2	0	0	-4.4	-2.3	not assigned.unknown	not assigned.unknown
MSGI1_84035	NODE_64468_length_155_cov_4.690322	2.7	4.9	29.7	2.8	0	-3.4	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_111771	NODE_6451_length_115_cov_15.234782	14.4	51.2	0.6	0	1.8	0	4.6	6.7	protein.degradation	LOL3 (LSD ONE LIKE 3); caspase/ cysteine-type endopeptidase Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain similar to latex-abund
MSGI1_5551	NODE_6452_length_1006_cov_27.075546	12.6	17.2	0	0	0	0	4.7	5.1	not assigned.unknown	not assigned.unknown
MSGI1_108358	NODE_6455_length_124_cov_14.677420	13.1	8.5	0.5	0	0	0	4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_31145	NODE_6455_length_358_cov_38.874302	173.8	100.3	67.4	88.8	0	0	1.4	0	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L23A (RPL23aB)  Identical to 60S ribosomal protein L23a-2 (RPL23AB) [Arabidopsis Thaliana] (GB:Q9M3C3); similar to ATRPL23A (RIBOSOMAL PROTEIN L23A), RNA binding / structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G"
MSGI1_87968	NODE_6456_length_149_cov_31.127518	26.2	14.3	4.6	2.6	0	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_16655	NODE_6456_length_564_cov_86.604607	159.7	99.1	51.1	127.9	0	1.3	1.6	0	protein.synthesis.misc ribososomal protein	EMB2171 (EMBRYO DEFECTIVE 2171); structural constituent of ribosome  Identical to 60S ribosomal protein L23 (RPL23C) [Arabidopsis Thaliana] (GB:P49690;GB:Q8L8P0;GB:Q9SDB5); similar to 60S ribosomal protein L23 (RPL23A) [Arabidopsis thaliana] (TAIR:AT1G044
MSGI1_102703	NODE_6457_length_130_cov_10.584616	6.5	6.5	29.7	19.4	0	0	-2.2	0	misc.short chain dehydrogenase/reductase (SDR)	short-chain dehydrogenase/reductase (SDR) family protein  similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G04900.1); similar to Os01g0227100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042468.1);
MSGI1_52042	NODE_6458_length_237_cov_6.586498	21.5	8	45.3	3.4	0	-3.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_30736	NODE_6464_length_362_cov_196.011047	60.8	47.8	24.7	50.5	0	0	1.3	0	tetrapyrrole synthesis.magnesium chelatase	GUN5 (GENOMES UNCOUPLED 5) Encodes magnesium chelatase involved in plastid-to-nucleus signal transduction. similar to Mg protoporphyrin IX chelatase [Nicotiana tabacum] (GB:AAB97152.1); similar to protoporphyrin IX:Mg Chelatase [Antirrhinum majus] (GB:CA
MSGI1_33151	NODE_6469_length_341_cov_60.023460	18.5	11.6	94.5	48.7	0	0	-2.4	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_75578	NODE_6471_length_170_cov_25.905882	27.6	34.1	0.6	0.2	0	0	5.5	7.4	not assigned.unknown	not assigned.unknown
MSGI1_77616	NODE_6475_length_166_cov_21.704819	24.2	27.3	55.9	31.4	0	0	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_111430	NODE_6480_length_118_cov_188.025421	162	86	45	49	0	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_76071	NODE_6482_length_169_cov_26.023668	14.6	1.4	1.5	1.5	-3.4	0	3.3	0	"misc.gluco-, galacto- and mannosidases"	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_76071	NODE_6482_length_169_cov_26.023668	14.6	1.4	1.5	1.5	-3.4	0	3.3	0	major CHO metabolism.degradation.starch.starch cleavage	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_117041	NODE_6482_length_70_cov_25.271429	15.3	13.1	62.1	3.1	0	-4.3	-2	0	protein.degradation.cysteine protease	"cysteine-type peptidase  similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G48350.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:"
MSGI1_21832	NODE_6483_length_472_cov_17.677965	0.4	0.2	45.6	55.8	0	0	-6.8	-8.1	not assigned.unknown	not assigned.unknown
MSGI1_43063	NODE_64834_length_278_cov_9.017985	10.9	7.5	0.4	0.3	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_84034	NODE_64861_length_155_cov_11.567742	13.8	2.5	23.2	1.4	0	-4.1	0	0	cell.organisation	"ANNAT4 (ANNEXIN 4, ANNEXIN ARABIDOPSIS 4); calcium ion binding / calcium-dependent phospholipid binding Annexins are a family of calcium dependent membrane binding proteins though to be involved in Golgi mediated secretion. This is one of four annexins i"
MSGI1_23714	NODE_6487_length_445_cov_22.692135	23	8.1	2.4	0.9	0	0	3.3	0	transport.sulphate	"SULTR3;1 (SULFATE TRANSPORTER 1); sulfate transporter Encodes a sulfate transporter. Identical to Sulfate transporter 3.1 (AST12) (AtST1) (SULTR3;1) [Arabidopsis Thaliana] (GB:Q9SV13;GB:O23250;GB:O64435;GB:O65025); similar to SULTR3,4 (SULTR3,4), sulfate"
MSGI1_45068	NODE_64871_length_268_cov_11.186567	3.3	13.1	0	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_58983	NODE_64885_length_212_cov_6.839622	8.2	1.3	16.5	0.6	0	-4.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_69551	NODE_64888_length_183_cov_11.978142	0.3	14.2	0	9.8	5.6	0	0	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"ethylene-responsive factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND"
MSGI1_69551	NODE_64888_length_183_cov_11.978142	0.3	14.2	0	9.8	5.6	0	0	0	hormone metabolism.ethylene.signal transduction	"ethylene-responsive factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND"
MSGI1_76591	NODE_6490_length_168_cov_61.160713	27.1	56.8	4.7	0.9	0	0	2.5	6	not assigned.unknown	not assigned.unknown
MSGI1_76070	NODE_6494_length_169_cov_29.053255	23.5	15.7	5.9	4.4	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_26311	NODE_6501_length_410_cov_10.192683	3.7	5.6	20	21.3	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_37922	NODE_6502_length_307_cov_37.648209	20.9	20.3	3.2	5.3	0	0	2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_20571	NODE_6503_length_492_cov_77.016258	7.4	52.4	54.8	67.3	2.8	0	-2.9	0	signalling.calcium	"polcalcin, putative / calcium-binding pollen allergen, putative  similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G18210.2); similar to calcium-binding pollen allergen [Arachis hypogaea] (GB:AAZ20284.1); contains InterPro doma"
MSGI1_20571	NODE_6503_length_492_cov_77.016258	7.4	52.4	54.8	67.3	2.8	0	-2.9	0	stress.abiotic.unspecified	"polcalcin, putative / calcium-binding pollen allergen, putative  similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G18210.2); similar to calcium-binding pollen allergen [Arachis hypogaea] (GB:AAZ20284.1); contains InterPro doma"
MSGI1_13471	NODE_6506_length_645_cov_17.779844	28.2	1.9	0.5	2.5	-3.9	0	5.8	0	cell wall.degradation.pectate lyases and polygalacturonases	"PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2); protein binding polygalacturonase inhibiting protein 2 (PGIP2) mRNA, Identical to Polygalacturonase inhibitor 2 precursor (Polygalacturonase-inhibiting protein) (PGIP-2) (PGIP2) [Arabidopsis Thaliana] (GB:Q"
MSGI1_37921	NODE_6508_length_307_cov_52.534203	47.4	76.8	114.7	36.9	0	-1.6	-1.3	1.1	secondary metabolism.simple phenols	"IRX12/LAC4 (laccase 4); copper ion binding / oxidoreductase Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem ph"
MSGI1_58664	NODE_651_length_213_cov_10.356808	16.5	17.2	0.2	0.5	0	0	6.4	5.1	not assigned.unknown	not assigned.unknown
MSGI1_115627	NODE_6514_length_82_cov_179.097565	71.5	159.4	80.8	68.9	1.2	0	0	1.2	not assigned.unknown	not assigned.unknown
MSGI1_41931	NODE_65142_length_284_cov_10.429578	3.9	12.8	0.1	0.6	0	0	0	4.4	not assigned.unknown	not assigned.unknown
MSGI1_103598	NODE_6523_length_129_cov_25.077518	19.6	0.2	2.8	0	-6.6	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_3025	NODE_6526_length_1328_cov_39.066265	21.6	23.7	18	46	0	1.4	0	0	PS.calvin cyle.aldolase	"fructose-bisphosphate aldolase, putative  similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT4G38970.1); similar to plastidic aldolase NPALDP1 [Nicotiana paniculata] (GB:BAA77604.1); similar to Os01g0118000 [Oryza sativa ("
MSGI1_65832	NODE_65262_length_192_cov_11.020833	12.2	6	0	0	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_94479	NODE_6527_length_140_cov_7.000000	0.1	1.3	11.1	17.5	0	0	-6.8	-3.8	not assigned.unknown	not assigned.unknown
MSGI1_45558	NODE_654_length_266_cov_46.135338	34.9	10.8	11.1	18.4	-1.7	0	1.7	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"RPL4 (ribosomal protein L4); structural constituent of ribosome encodes a plastid ribosomal protein L4 Identical to 50S ribosomal protein L4, chloroplast precursor (CL4) (R-protein L4) (RPL4) [Arabidopsis Thaliana] (GB:O50061;GB:Q8LF27;GB:Q8VZS1;GB:Q9LNV"
MSGI1_92174	NODE_65400_length_143_cov_12.804195	0.6	14.4	1.2	2.2	4.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_54145	NODE_6546_length_229_cov_94.729256	102.3	34	35.7	33.7	-1.6	0	1.5	0	cell.organisation	"ACT11 (ACTIN-11); structural constituent of cytoskeleton Encodes an actin that is expressed predominantly during reproductive development. Identical to Actin-11 (ACT11) [Arabidopsis Thaliana] (GB:P53496); similar to ACT3 (ACTIN 3), structural constituent"
MSGI1_82793	NODE_6547_length_157_cov_115.764328	3.4	0.2	217.2	0	0	-8.8	-6	0	not assigned.unknown	not assigned.unknown
MSGI1_9499	NODE_6547_length_781_cov_14.516006	3.3	17.4	0.4	0.4	0	0	0	5.4	not assigned.unknown	not assigned.unknown
MSGI1_56319	NODE_655_length_221_cov_451.588226	213.4	133.9	26.2	62	0	1.2	3	1.1	cell.organisation	TUA5 (tubulin alpha-5) Encodes an isoform of alpha tubulin. Closely related to adjacent gene TUA3 suggesting recent duplication. Identical to Tubulin alpha-3/alpha-5 chain (TUBA5) [Arabidopsis Thaliana] (GB:P20363); similar to TUA3 (tubulin alpha-3) [Ara
MSGI1_42542	NODE_6551_length_281_cov_66.779358	21.4	35.5	18.7	12.3	0	0	0	1.5	not assigned.unknown	not assigned.unknown
MSGI1_31144	NODE_6553_length_358_cov_32.438549	20.6	20.4	0.1	0	0	0	7.7	5.4	not assigned.unknown	not assigned.unknown
MSGI1_77083	NODE_6554_length_167_cov_56.269463	2.6	26.6	8.1	31.7	3.4	2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_38371	NODE_6556_length_304_cov_110.898026	81.8	36	20.6	23	-1.2	0	2	0	protein.degradation.ubiquitin	UBQ6 (ubiquitin 6); protein binding polyubiquitin gene Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical to 40S ribosomal protein S27a-2 (UBQ6) [Arabidopsis Thaliana]
MSGI1_91471	NODE_65581_length_144_cov_13.604167	8.3	9.7	35.3	13.7	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_40627	NODE_6561_length_291_cov_31.312716	20.4	23.2	10.9	5.1	0	0	0	2.2	transporter.sugars	ATPLT5 (POLYOL TRANSPORTER 5); D-ribose transporter/ D-xylose transporter/ carbohydrate transporter/ galactose transporter/ glucose transporter/ glycerol transporter/ hydrogen:sugar symporter/ mannitol transporter/ monosaccharide transporter/ myo-inosito
MSGI1_99209	NODE_65664_length_134_cov_5.656716	16.5	7.5	1.2	14.4	0	3.6	3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_61885	NODE_65710_length_203_cov_9.044335	10.4	10.3	0.2	0.2	0	0	5.7	5.7	misc.short chain dehydrogenase/reductase (SDR)	short-chain dehydrogenase/reductase (SDR) family protein  similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G15940.1); similar to ALTE [Homo sapiens] (GB:AAQ89208.1); similar to Os09g0346600 [Oryza sativa
MSGI1_100945	NODE_65759_length_132_cov_18.303030	14.7	43.4	8.6	36.1	1.6	2.1	0	0	cell wall.cellulose synthesis.cellulose synthase	"CESA8 (CELLULASE SYNTHASE 8); cellulose synthase/ transferase, transferring glycosyl groups Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content,"
MSGI1_95221	NODE_65760_length_139_cov_3.410072	3.5	0.7	80.6	1	0	-6.3	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_65828	NODE_65781_length_192_cov_6.197917	8.2	19	3.5	2.6	0	0	0	2.9	not assigned.unknown	not assigned.unknown
MSGI1_113474	NODE_6580_length_102_cov_10.254902	9.9	10.8	0.3	0	0	0	0	4.4	not assigned.unknown	not assigned.unknown
MSGI1_80996	NODE_65800_length_160_cov_10.981250	18.4	11.1	0	0	0	0	5.2	4.5	not assigned.unknown	not assigned.unknown
MSGI1_33287	NODE_65842_length_340_cov_7.411765	6.1	25.5	13.7	4.4	2.1	0	0	2.5	not assigned.unknown	not assigned.unknown
MSGI1_119702	NODE_65843_length_61_cov_22.147541	12.5	13.5	0	0	0	0	4.6	4.8	not assigned.unknown	not assigned.unknown
MSGI1_79861	NODE_65855_length_162_cov_4.802469	5	8.8	20.9	1.8	0	-3.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_66198	NODE_65863_length_191_cov_13.408377	15	15.8	26.4	6	0	-2.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_63994	NODE_65867_length_197_cov_4.680203	5.4	13.2	9	1.2	0	0	0	3.5	not assigned.unknown	not assigned.unknown
MSGI1_34765	NODE_65879_length_329_cov_17.513678	10.6	10.6	18.4	44.2	0	1.3	0	-2.1	PS.calvin cyle.aldolase	"fructose-bisphosphate aldolase, putative  similar to fructose-bisphosphate aldolase, cytoplasmic [Arabidopsis thaliana] (TAIR:AT4G26520.1); similar to fructose-bisphosphate aldolase [Pandanus amaryllifolius] (GB:AAR88661.1); contains InterPro domain Fruc"
MSGI1_34765	NODE_65879_length_329_cov_17.513678	10.6	10.6	18.4	44.2	0	1.3	0	-2.1	glycolysis.aldolase	"fructose-bisphosphate aldolase, putative  similar to fructose-bisphosphate aldolase, cytoplasmic [Arabidopsis thaliana] (TAIR:AT4G26520.1); similar to fructose-bisphosphate aldolase [Pandanus amaryllifolius] (GB:AAR88661.1); contains InterPro domain Fruc"
MSGI1_87309	NODE_65889_length_150_cov_5.080000	7	34.6	19.1	42.8	2.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_62194	NODE_65919_length_202_cov_7.311881	4.7	31.5	0	0	2.7	0	0	6	not assigned.unknown	not assigned.unknown
MSGI1_87961	NODE_65924_length_149_cov_18.275167	16.6	11.5	0.9	0	0	0	4.2	4.5	major CHO metabolism.synthesis.starch.transporter	"GPT1 (glucose-6-phosphate transporter 1); antiporter/ glucose-6-phosphate transporter glucose6-Phosphate/phosphate transporter 1 Identical to Glucose-6-phosphate/phosphate translocator 1, chloroplast precursor (GPT1) [Arabidopsis Thaliana] (GB:Q9M5A9;GB:"
MSGI1_87961	NODE_65924_length_149_cov_18.275167	16.6	11.5	0.9	0	0	0	4.2	4.5	transport.metabolite transporters at the envelope membrane	"GPT1 (glucose-6-phosphate transporter 1); antiporter/ glucose-6-phosphate transporter glucose6-Phosphate/phosphate transporter 1 Identical to Glucose-6-phosphate/phosphate translocator 1, chloroplast precursor (GPT1) [Arabidopsis Thaliana] (GB:Q9M5A9;GB:"
MSGI1_17880	NODE_6593_length_540_cov_253.731476	324.2	146.4	165.2	112.5	-1.1	0	1	0	cell wall.precursor synthesis.UGD	"UDP-glucose 6-dehydrogenase, putative  similar to ATUGD1/UGD1 (UDP-glucose dehydrogenase 1), UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G26570.1); similar to UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G29360.2); similar"
MSGI1_57435	NODE_65931_length_217_cov_7.101382	15.4	5.4	2.1	4.9	0	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_86616	NODE_65964_length_151_cov_8.993378	7.1	23.6	12.4	2.8	0	0	0	3.1	not assigned.unknown	not assigned.unknown
MSGI1_91469	NODE_65971_length_144_cov_17.729166	8.9	12.6	0	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_102697	NODE_6599_length_130_cov_14.853847	5.1	8.7	22.6	15.7	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_47642	NODE_65998_length_256_cov_21.226562	13.1	77.7	21.4	46.4	2.6	0	0	0	cell wall	gibberellin-regulated family protein  similar to ATEPR1 (Arabidopsis thaliana extensin proline-rich 1) [Arabidopsis thaliana] (TAIR:AT2G27380.1); similar to hypothetical protein [Brassica napus var. napus] (GB:AAS68179.1); contains InterPro domain Pistil-
MSGI1_47642	NODE_65998_length_256_cov_21.226562	13.1	77.7	21.4	46.4	2.6	0	0	0	hormone metabolism.gibberelin.induced-regulated-responsive-activated	gibberellin-regulated family protein  similar to ATEPR1 (Arabidopsis thaliana extensin proline-rich 1) [Arabidopsis thaliana] (TAIR:AT2G27380.1); similar to hypothetical protein [Brassica napus var. napus] (GB:AAS68179.1); contains InterPro domain Pistil-
MSGI1_66197	NODE_66030_length_191_cov_5.774869	3.1	4	34.4	2.8	0	-3.6	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_115048	NODE_66050_length_87_cov_19.505747	13.2	8.8	0	0	0	0	4.7	0	cell wall.pectin*esterases.acetyl esterase	"pectinacetylesterase, putative  similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT5G26670.1); similar to Pectinacetylesterase [Medicago truncatula] (GB:ABD33181.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963"
MSGI1_51574	NODE_66054_length_239_cov_10.041841	7	14.7	30.4	11.4	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_48537	NODE_66060_length_252_cov_12.333333	11.7	15.3	0	0	0	0	4.5	4.9	not assigned.unknown	not assigned.unknown
MSGI1_74147	NODE_66073_length_173_cov_8.942197	5.4	6.3	58.6	7.1	0	-3	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_90738	NODE_66074_length_145_cov_4.855173	4.4	3.6	22.4	3.9	0	-2.5	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_78135	NODE_66079_length_165_cov_7.490909	8.9	3.9	6.2	38.7	0	2.6	0	-3.3	not assigned.unknown	not assigned.unknown
MSGI1_34187	NODE_6608_length_333_cov_67.993996	40.8	23.1	12.8	20.4	0	0	1.7	0	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	catalytic/ coenzyme binding  similar to putative NADH:ubiquinone oxidoreductase 39 kDa subunit precursor [Chlamydomonas reinhardtii] (GB:AAQ55458.1); similar to Os02g0816800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048516.1); contains InterPro d
MSGI1_104513	NODE_661_length_128_cov_743.015625	721.1	3.1	66.3	2.7	-7.9	-4.6	3.4	0	cell wall.pectin*esterases.PME	pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT4G33220.1); similar to Pectinesterase PPE8B precursor (Pectin methylesterase) (PE) (GB:Q43062); similar to pectin methylesterase PME1 [Vitis vinifera]
MSGI1_45754	NODE_661_length_265_cov_28.358490	0.3	0.5	65.3	0.2	0	-8.4	-7.8	0	development.late embryogenesis abundant	"late embryogenesis abundant protein, putative / LEA protein, putative  similar to late embryogenesis abundant protein, putative / LEA protein, putative [Arabidopsis thaliana] (TAIR:AT1G52690.2); similar to group 3 late embryogenesis abundant protein [Bra"
MSGI1_76063	NODE_66100_length_169_cov_5.171597	4.3	28.4	3.8	8.1	2.7	0	0	1.8	hormone metabolism.abscisic acid.synthesis-degradation	"CCD8 (CAROTENOID CLEAVAGE DIOXYGENASE 8) Encodes a protein with similarity to carotenoid cleaving deoxygenases, the enzymes that cleave beta-carotene. Involved in the production of a graft transmissable signal to suppress axillary branching. Protein is l"
MSGI1_94473	NODE_6615_length_140_cov_9.035714	0	0	15.7	0.2	0	-6.3	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_57754	NODE_66158_length_216_cov_16.546297	19	7	1.1	0.2	0	0	4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_102694	NODE_6620_length_130_cov_8.923077	3.1	11.2	1.8	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_30793	NODE_6620_length_361_cov_60.238228	51.4	36.7	23.3	35.9	0	0	1.1	0	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	"NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial, putative  similar to NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit (ISS) [Ostreococcus tauri] (GB:CAL57468.1); similar to NADH:ubiquinone oxidoreductase 51 kD subunit [Chlamydomonas rei"
MSGI1_106405	NODE_66216_length_126_cov_10.587301	11	22.7	8.6	38.3	0	2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_71312	NODE_6622_length_179_cov_33.625698	40.1	8.3	22.3	15.1	-2.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_19223	NODE_6622_length_519_cov_27.300577	1.3	22.9	1.3	10.9	4.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_110415	NODE_66241_length_122_cov_11.737705	12	10.3	0	0	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_31382	NODE_66243_length_356_cov_20.272472	20.2	1.8	10.3	8.8	-3.5	0	0	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	basic helix-loop-helix (bHLH) family protein  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G68920.3); similar to bHLH transcription factor GBOF-1 [Tulipa gesneriana] (GB:AAD56411.1); contains InterPro domain Heli
MSGI1_119680	NODE_66245_length_61_cov_17.114754	30.2	31.8	352.2	28.4	0	-3.6	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_31019	NODE_66250_length_359_cov_8.557103	12.9	1	1.3	0.8	-3.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_3766	NODE_6626_length_1204_cov_57.556477	50.3	33.1	83.5	32.5	0	-1.4	0	0	misc.cytochrome P450	"CYP72A14 (cytochrome P450, family 72, subfamily A, polypeptide 14); oxygen binding putative cytochrome P450 similar to CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14690.1); similar t"
MSGI1_48112	NODE_6627_length_254_cov_18.716536	11.3	35	22.5	16.7	1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_77076	NODE_66299_length_167_cov_16.952095	23.4	9.6	5.1	8.1	0	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_58981	NODE_6631_length_212_cov_140.179245	0	0	148.1	57.6	0	-1.4	-8.2	-6.8	not assigned.unknown	not assigned.unknown
MSGI1_112889	NODE_66314_length_106_cov_25.132076	15.6	7.1	1.8	3.6	0	0	3.1	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"glycosyl hydrolase family 3 protein  similar to BXL1 (BETA-XYLOSIDASE 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G49360.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G10560.1); sim"
MSGI1_72739	NODE_66324_length_176_cov_3.647727	3.6	1.9	23.2	3.2	0	-2.9	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_102690	NODE_6633_length_130_cov_11.315385	11.1	14.2	0.3	0	0	0	5.2	4.8	not assigned.unknown	not assigned.unknown
MSGI1_56851	NODE_6634_length_219_cov_11.821918	6.2	6.2	28.4	24.9	0	0	-2.2	-2	not assigned.unknown	not assigned.unknown
MSGI1_45556	NODE_6635_length_266_cov_5.789474	3.6	27	3.7	10.1	2.9	0	0	0	RNA.regulation of transcription.C2H2 zinc finger family	"zinc finger (C2H2 type) protein (WIP2)  similar to zinc finger (C2H2 type) protein (WIP4) [Arabidopsis thaliana] (TAIR:AT3G20880.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE93767.1); contains InterPro domain Zinc finger, C2H2-type;"
MSGI1_70457	NODE_66359_length_181_cov_14.530387	15.8	21	0	0	0	0	5	5.4	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_81582	NODE_6636_length_159_cov_14.817610	14.9	4	0	0	0	0	4.9	0	transport.metabolite transporters at the envelope membrane	"AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding mitochondrial ADP/ATP carrier Identical to ADP,ATP carrier protein 1, mitochondrial precursor (ADP/ATP translocase 1) (Adenine nucleotide translocator 1) (ANT 1) (ANT1) [Arabidopsis Thaliana] (GB:P311"
MSGI1_81582	NODE_6636_length_159_cov_14.817610	14.9	4	0	0	0	0	4.9	0	major CHO metabolism.synthesis.starch.transporter	"AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding mitochondrial ADP/ATP carrier Identical to ADP,ATP carrier protein 1, mitochondrial precursor (ADP/ATP translocase 1) (Adenine nucleotide translocator 1) (ANT 1) (ANT1) [Arabidopsis Thaliana] (GB:P311"
MSGI1_24516	NODE_6636_length_433_cov_7.023095	27.6	14.1	8.5	14.6	0	0	1.7	0	secondary metabolism.isoprenoids.tocopherol biosynthesis.MPBQ/MSBQ methyltransferase	"APG1 (ALBINO OR PALE GREEN MUTANT 1); methyltransferase Encodes a MPBQ/MSBQ methyltransferase located in the chloroplast inner envelope membrane.  Mutant plants lack plastoquinone (PQ), suggesting that the APG1 protein is involved in the methylation step"
MSGI1_85314	NODE_66372_length_153_cov_6.509804	9.7	10.6	112.7	5.4	0	-4.4	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_30508	NODE_6638_length_364_cov_11.365385	13.5	5.8	22.3	4.1	0	-2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_119674	NODE_66385_length_61_cov_7.311475	4.8	25.7	0	0	2.4	0	0	5.7	transporter.sugars.sucrose	SUC1 (SUCROSE-PROTON SYMPORTER 1); carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter Sucrose transporter gene induced in response to nematodes; member of Sucrose-proton symporter family. Identical to Sucrose transport protein SUC1 (Sucro
MSGI1_71308	NODE_6640_length_179_cov_6.312849	1.1	1.6	1.4	14.2	0	3.3	0	-3.1	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	CBF4/DREB1D (C- REPEAT-BINDING FACTOR 4); DNA binding / transcription factor/ transcriptional activator encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF4). The protein contains one AP2 domain. There are six members i
MSGI1_96011	NODE_66420_length_138_cov_3.652174	15.3	0.4	0.5	0	-5.3	0	4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_87303	NODE_66429_length_150_cov_4.680000	4.8	1.9	6	38	0	2.7	0	-4.3	not assigned.unknown	not assigned.unknown
MSGI1_44841	NODE_6644_length_269_cov_28.007435	3.6	18.9	25.7	12.1	2.4	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_119668	NODE_6645_length_61_cov_26.934425	0.2	0	48.3	0	0	-6.6	-7.9	0	not assigned.unknown	not assigned.unknown
MSGI1_26070	NODE_6648_length_413_cov_230.038742	145	75.4	67	79.9	0	0	1.1	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L28 (RPL28A)  Identical to 60S ribosomal protein L28-1 (RPL28A) [Arabidopsis Thaliana] (GB:O82204); similar to 60S ribosomal protein L28 (RPL28C) [Arabidopsis thaliana] (TAIR:AT4G29410.2); similar to unknown [Solanum tuberosum] (GB:A
MSGI1_72268	NODE_66484_length_177_cov_8.474576	2.3	7.3	16.8	7.8	0	0	-2.9	0	major CHO metabolism.degradation.starch.starch cleavage	"AMY2/ATAMY2 (ALPHA-AMYLASE-LIKE 2); alpha-amylase alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic doma"
MSGI1_105425	NODE_66494_length_127_cov_14.141732	6.2	32.9	10.6	6.1	2.4	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_22697	NODE_66498_length_460_cov_12.463043	16.8	1.1	7.2	0.7	-3.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_119662	NODE_66499_length_61_cov_13.295082	4.7	9.9	21.9	16.1	0	0	-2.2	0	OPP.oxidative PP.G6PD	G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6); glucose-6-phosphate 1-dehydrogenase Encodes a cytosolic glucose-6-phosphate dehydrogenase that is insensitive to reduction by DTT and whose mRNA is expressed ubiquitously. Identical to Glucose-6-phosphate 1-de
MSGI1_102686	NODE_66514_length_130_cov_9.461538	5.2	9.3	29	14.4	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_115270	NODE_66518_length_85_cov_14.447059	10.8	9.3	0	0	0	0	4.4	0	TCA / org. transformation.TCA.aconitase	"aconitase family protein / aconitate hydratase family protein  similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT4G26970.1); similar to 3-isopropylmalate dehydratase large subun"
MSGI1_115270	NODE_66518_length_85_cov_14.447059	10.8	9.3	0	0	0	0	4.4	0	TCA / org. transformation.other organic acid transformaitons.aconitase	"aconitase family protein / aconitate hydratase family protein  similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT4G26970.1); similar to 3-isopropylmalate dehydratase large subun"
MSGI1_90731	NODE_66546_length_145_cov_27.951725	19.4	34.2	14.2	11	0	0	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_31702	NODE_6655_length_353_cov_108.303116	1.9	7.7	20.6	28.5	0	0	-3.4	-1.9	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN1 (DARK INDUCIBLE 6) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumul"
MSGI1_96010	NODE_66557_length_138_cov_11.057971	11.6	26	47.6	21.9	0	0	-2	0	N-metabolism.ammonia metabolism.glutamate synthase.NADH dependent	GLT1 (NADH-dependent glutamate synthase 1 gene) NADH-dependent glutamate synthase similar to GLU1 (FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1) [Arabidopsis thaliana] (TAIR:AT5G04140.1); similar to GLU2 (Glutamate synthase) [Arabidopsis thaliana] (TAIR:AT2
MSGI1_99194	NODE_66576_length_134_cov_10.029851	45.8	8	22.7	16.2	-2.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_101787	NODE_66579_length_131_cov_4.923664	2.4	0	206.6	0.3	0	-9.4	-6.4	0	cell wall.modification	"ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1) EXPANSIN-RELATED. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-like B1 precursor (AtEXLB1) (AtEXPR1) (At-EXPR1) (Ath- ExpBeta-3.1) (EXLB1) [Arab"
MSGI1_107383	NODE_66604_length_125_cov_4.208000	4.5	4.5	29.8	2.2	0	-3.8	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_119653	NODE_66605_length_61_cov_41.000000	13.1	12.4	0.8	0	0	0	4	4.6	protein.synthesis.misc ribososomal protein	"40S ribosomal protein S27 (RPS27D)  Identical to 40S ribosomal protein S27-3 (RPS27D) [Arabidopsis Thaliana] (GB:Q8L953;GB:Q9FGV6); similar to ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3"
MSGI1_79246	NODE_66632_length_163_cov_3.920245	2.4	4.8	3	39.9	0	3.7	0	-3.1	major CHO metabolism.synthesis.starch.AGPase	"APL3 (large subunit of AGP 3) Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isof"
MSGI1_72267	NODE_66634_length_177_cov_23.412430	20.7	2.9	1.4	1.1	-2.8	0	3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_82783	NODE_6665_length_157_cov_256.171967	166.2	144.7	0.4	0	0	0	8.7	8.2	protein.aa activation.lysine-tRNA ligase	"lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative  Identical to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) [Arabidopsis Thaliana] (GB:Q9ZPI1); similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Ar"
MSGI1_94468	NODE_66651_length_140_cov_7.535714	3.8	7.3	32.6	8.2	0	-2	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_79858	NODE_66657_length_162_cov_7.444445	8.4	2.4	10	17.6	0	0	0	-2.9	protein.degradation.subtilases	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1); similar to Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE93526.1); contains InterPro domain Pro"
MSGI1_114135	NODE_6666_length_96_cov_96.541664	72.9	208	90.1	209.7	1.5	1.2	0	0	cell wall.cell wall proteins.AGPs	FLA12 (fasciclin-like arabinogalactan-protein 12)  Identical to Fasciclin-like arabinogalactan protein 12 precursor (FLA12) [Arabidopsis Thaliana] (GB:Q8LEE9;GB:Q94EG7;GB:Q9FKJ8); similar to FLA11 (fasciclin-like arabinogalactan-protein 11) [Arabidopsis t
MSGI1_50364	NODE_66664_length_244_cov_4.704918	16.8	4.2	1.7	3.1	0	0	3.3	0	secondary metabolism.flavonoids.flavonols	"UGT73C6 (UDP-glucosyl transferase 73C6); UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups The At2g36790 gene encodes a UDP-glucose:flavonol-3-O-glycoside-7-O-glucosyltransferase (UGT73C6)attaching a glucosyl res"
MSGI1_15708	NODE_6667_length_585_cov_71.400002	13.2	38.3	9.2	21.9	1.5	0	0	0	protein.targeting.nucleus	AT-IMP (Arabidopsis thaliana importin alpha); protein transporter Encodes importin alpha involved in nuclear import. Identical to Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) (KAP1) [Arabidopsis Thaliana] (GB:Q96321;GB:O49599;GB:O81
MSGI1_82782	NODE_66695_length_157_cov_23.369427	24	9	2.7	4.8	0	0	3.2	0	protein.degradation.serine protease	"SCPL27 (serine carboxypeptidase-like 27); serine carboxypeptidase  similar to SCPL26 (serine carboxypeptidase-like 26), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G35780.1); similar to putative serine carboxypeptidase II [Oryza sativa (japon"
MSGI1_119646	NODE_66714_length_61_cov_31.278688	3.4	13.7	28.7	36.7	0	0	-3.1	-1.4	minor CHO metabolism.raffinose family.raffinose synthases.putative	"raffinose synthase family protein / seed imbibition protein-related  similar to ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G55740.1); similar to alkaline alpha galactosidas"
MSGI1_22313	NODE_6672_length_465_cov_23.251614	16.9	2.2	10	1.2	-2.9	0	0	0	signalling.calcium	"calmodulin, putative  similar to CAM8 (CALMODULIN 8), calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G14640.1); similar to calmodulin NtCaM13 [Nicotiana tabacum] (GB:BAB61919.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains"
MSGI1_65083	NODE_66728_length_194_cov_27.515465	15.5	15.2	11.2	32.6	0	1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_109400	NODE_66735_length_123_cov_8.837399	45.9	7.8	22.4	9.5	-2.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_68268	NODE_66737_length_186_cov_7.204301	9.4	4.2	31.4	6.3	0	-2.3	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_70923	NODE_66743_length_180_cov_7.633333	0.5	7.6	53.9	4.8	0	-3.5	-6.8	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP2 (ARABIDOPSIS THALIANA SEED IMBIBITION 2); hydrolase, hydrolyzing O-glycosyl compounds  similar to ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G55740.1); similar to DI"
MSGI1_119638	NODE_6681_length_61_cov_29.524590	21.1	16.2	0.4	0	0	0	5.7	5	not assigned.unknown	not assigned.unknown
MSGI1_117189	NODE_66821_length_69_cov_68.101448	0	27	5.2	42.1	5.8	3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_90729	NODE_6684_length_145_cov_8.737931	0.1	0.4	17.7	9	0	0	-7.5	0	not assigned.unknown	not assigned.unknown
MSGI1_58660	NODE_66858_length_213_cov_9.666667	11	32.7	5.8	10.4	1.6	0	0	1.7	not assigned.unknown	not assigned.unknown
MSGI1_119635	NODE_66859_length_61_cov_12.770492	13.6	0.2	0.8	0	-6.1	0	4.1	0	cell wall.cell wall proteins.AGPs	FLA6 (FLA6) fasciclin-like arabinogalactan-protein 6 (Fla6) Identical to Fasciclin-like arabinogalactan protein 6 precursor (FLA6) [Arabidopsis Thaliana] (GB:Q9SIL7;GB:Q9C5Q5); similar to FLA9 (FLA9) [Arabidopsis thaliana] (TAIR:AT1G03870.1); similar to u
MSGI1_110403	NODE_6686_length_122_cov_29.852459	12.2	6.9	24.9	2.5	0	-3.3	0	0	protein.degradation.cysteine protease	"cysteine proteinase, putative  similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G48350.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (Int"
MSGI1_77072	NODE_6686_length_167_cov_51.209579	52.3	30.5	129.9	124.7	0	0	-1.3	-2	not assigned.unknown	not assigned.unknown
MSGI1_84682	NODE_66873_length_154_cov_20.766233	30	11	4.7	13.8	0	0	2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_59554	NODE_66879_length_210_cov_5.700000	6.7	12.2	1.3	0.9	0	0	0	3.8	not assigned.unknown	not assigned.unknown
MSGI1_90727	NODE_6689_length_145_cov_38.620689	25.4	54.9	80.4	32.4	1.1	-1.3	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_80431	NODE_66892_length_161_cov_19.086956	16.1	8	43.4	16.7	0	-1.4	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_91458	NODE_66895_length_144_cov_24.319445	32.4	16.9	0	0.2	0	0	6	6.4	protein.synthesis.misc ribososomal protein	60S ribosomal protein L10A (RPL10aB)  Identical to 60S ribosomal protein L10a-2 (RPL10AB) [Arabidopsis Thaliana] (GB:P59230;GB:P53029;GB:Q9C5M4;GB:Q9SLF8); similar to 60S ribosomal protein L10A (RPL10aA) [Arabidopsis thaliana] (TAIR:AT1G08360.1); similar
MSGI1_86610	NODE_66900_length_151_cov_8.039735	5.5	15.5	38.7	13.7	0	-1.5	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_119629	NODE_6691_length_61_cov_42.278690	46.3	30.7	14.8	35.8	0	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_36789	NODE_6694_length_314_cov_20.636942	12.9	42.7	23	49.1	1.7	0	0	0	transport.ABC transporters and multidrug resistance systems	"ATPDR7/PDR7 (PLEIOTROPIC DRUG RESISTANCE 7); ATPase, coupled to transmembrane movement of substances  Identical to Probable pleiotropic drug resistance protein 7 (PDR7) [Arabidopsis Thaliana] (GB:Q7PC86;GB:Q9XI48); similar to ATPDR12/PDR12 (PLEIOTROPIC D"
MSGI1_119627	NODE_66956_length_61_cov_8.606558	12.1	4.3	0.8	0	0	0	3.9	0	PS.calvin cyle.FBPase	"fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative  Identical to Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D- fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase)"
MSGI1_103588	NODE_66959_length_129_cov_7.410853	5.7	9.9	27.3	10.6	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_26310	NODE_6696_length_410_cov_14.397561	2.1	0.7	43.9	1.1	0	-5.3	-4.4	0	protein.postranslational modification	"protein kinase family protein  similar to AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1), kinase [Arabidopsis thaliana] (TAIR:AT3G25250.1); similar to Os02g0603000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047362.1); similar to Os04g0488700 [Oryza sativa"
MSGI1_38827	NODE_67027_length_301_cov_5.591362	13.8	15.8	10.3	30.9	0	1.6	0	0	amino acid metabolism.degradation.aspartate family.lysine	enoyl-CoA hydratase/isomerase family protein  similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:AT4G14430.1); similar to Enoyl-CoA hydratase/isomerase [Medicago truncatula] (GB:ABD28677.1); contains InterPro domain Enoyl
MSGI1_38827	NODE_67027_length_301_cov_5.591362	13.8	15.8	10.3	30.9	0	1.6	0	0	amino acid metabolism.degradation.aromatic aa.tryptophan	enoyl-CoA hydratase/isomerase family protein  similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:AT4G14430.1); similar to Enoyl-CoA hydratase/isomerase [Medicago truncatula] (GB:ABD28677.1); contains InterPro domain Enoyl
MSGI1_38827	NODE_67027_length_301_cov_5.591362	13.8	15.8	10.3	30.9	0	1.6	0	0	amino acid metabolism.degradation.branched-chain group.shared	enoyl-CoA hydratase/isomerase family protein  similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:AT4G14430.1); similar to Enoyl-CoA hydratase/isomerase [Medicago truncatula] (GB:ABD28677.1); contains InterPro domain Enoyl
MSGI1_38827	NODE_67027_length_301_cov_5.591362	13.8	15.8	10.3	30.9	0	1.6	0	0	lipid metabolism.lipid degradation.beta-oxidation.enoyl CoA hydratase	enoyl-CoA hydratase/isomerase family protein  similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:AT4G14430.1); similar to Enoyl-CoA hydratase/isomerase [Medicago truncatula] (GB:ABD28677.1); contains InterPro domain Enoyl
MSGI1_84025	NODE_6703_length_155_cov_4.961290	4.8	1.8	29.3	9.1	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_36537	NODE_6703_length_316_cov_160.851273	30	95.2	6.2	5.8	1.7	0	2.3	4	"misc.oxidases - copper, flavone etc."	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_57114	NODE_6704_length_218_cov_95.669724	12.9	8.3	41.1	20.5	0	0	-1.7	0	protein.degradation	"SCPL48 (serine carboxypeptidase-like 48); serine carboxypeptidase  similar to SCPL47 (serine carboxypeptidase-like 47), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G22980.1); similar to SCPL49 (serine carboxypeptidase-like 49), serine carboxy"
MSGI1_57113	NODE_67042_length_218_cov_3.628440	4.1	26.5	116.8	7.2	2.7	-4	-4.8	1.9	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP2 (ARABIDOPSIS THALIANA SEED IMBIBITION 2); hydrolase, hydrolyzing O-glycosyl compounds  similar to ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G55740.1); similar to DI"
MSGI1_88654	NODE_6705_length_148_cov_86.709457	72.8	50.6	14.9	32.6	0	0	2.3	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L4/L1 (RPL4A)  Identical to 60S ribosomal protein L4-1 (L1) (RPL4A) [Arabidopsis Thaliana] (GB:Q9SF40); similar to 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] (TAIR:AT5G02870.1); similar to putative 60S ribosomal prot
MSGI1_107376	NODE_67058_length_125_cov_5.184000	5.9	1.4	21.1	2.2	0	-3.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_119620	NODE_67079_length_61_cov_21.524590	18.8	28.2	7.6	2.9	0	0	0	3.3	not assigned.unknown	not assigned.unknown
MSGI1_64732	NODE_67099_length_195_cov_38.974358	35.1	2.1	0.2	0	-4.1	0	7.5	0	not assigned.unknown	not assigned.unknown
MSGI1_95210	NODE_6715_length_139_cov_29.892086	29	26.3	0	0	0	0	5.9	5.7	cell wall.precursor synthesis.RHM	"RHM1/ROL1 (RHAMNOSE BIOSYNTHESIS1); UDP-glucose 4,6-dehydratase/ catalytic Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha.  The de"
MSGI1_59243	NODE_6717_length_211_cov_25.317535	1.8	2.2	19.3	3.7	0	-2.4	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_62187	NODE_6718_length_202_cov_147.108917	94.3	67.1	32.7	60.6	0	0	1.5	0	protein.synthesis.elongation	"elongation factor 1-beta, putative / EF-1-beta, putative  Identical to Elongation factor 1-delta 2 (EF-1-delta 2) (Elongation factor 1B-beta 2) (eEF-1B beta 2) [Arabidopsis Thaliana] (GB:Q9SI20;GB:Q7GA96;GB:Q8LB45); similar to elongation factor 1-beta /"
MSGI1_86606	NODE_67185_length_151_cov_11.092715	11.4	13.7	0.2	0	0	0	5.8	4.8	lipid metabolism.lipid degradation.beta-oxidation.mutifunctional	MFP2 (MULTIFUNCTIONAL PROTEIN); enoyl-CoA hydratase Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA
MSGI1_22846	NODE_67195_length_458_cov_18.558952	15.7	54	34.7	78.4	1.8	1.2	0	0	protein.postranslational modification	"CIPK12 (CIPK12); kinase Encodes CBL-interacting protein kinase 12 (CIPK12). similar to CIPK19 (CIPK19), kinase [Arabidopsis thaliana] (TAIR:AT5G45810.1); similar to CIPK13 (CIPK13), kinase [Arabidopsis thaliana] (TAIR:AT2G34180.1); similar to CIPK18 (CIP"
MSGI1_101779	NODE_67210_length_131_cov_12.190840	11	5.1	0	0.5	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_100934	NODE_67215_length_132_cov_7.651515	2.2	2.5	48.1	3.6	0	-3.7	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_17327	NODE_67227_length_551_cov_12.878403	2.4	28.9	46.5	8.8	3.6	-2.4	-4.3	1.7	not assigned.unknown	not assigned.unknown
MSGI1_63609	NODE_6723_length_198_cov_13.489899	119.4	99	14.4	55.7	0	2	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_13881	NODE_67240_length_633_cov_13.519747	10	42.6	34.6	31.8	2.1	0	-1.8	0	development.unspecified	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_13881	NODE_67240_length_633_cov_13.519747	10	42.6	34.6	31.8	2.1	0	-1.8	0	RNA.regulation of transcription.GRAS transcription factor family	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_113800	NODE_67245_length_99_cov_25.050505	14.2	17.6	19.5	1.3	0	-3.9	0	3.8	stress.biotic	glycosyl hydrolase family 81 protein  similar to glycosyl hydrolase family 81 protein [Arabidopsis thaliana] (TAIR:AT1G18310.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96863.1); similar to beta-glucan-binding protein 4 [Medicago truncatu
MSGI1_78127	NODE_6726_length_165_cov_11.436363	0.7	3.2	19.6	2.9	0	-2.8	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_34611	NODE_67262_length_330_cov_44.178787	32.6	35.2	7.6	5.8	0	0	2.1	2.6	not assigned.unknown	not assigned.unknown
MSGI1_96003	NODE_67289_length_138_cov_6.275362	11.9	4.1	0.2	0	0	0	5.9	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 31 precursor (EC 1.11.1.7) (Atperox P31) (ATP41) (PER31) [Arabidopsis Thaliana] (GB:Q9LHA7;GB:Q94CB9); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G40150.1); similar to Haem peroxidase, pl"
MSGI1_41339	NODE_6729_length_287_cov_23.027874	10.5	17.2	0	0.1	0	0	0	7.4	not assigned.unknown	not assigned.unknown
MSGI1_20056	NODE_6730_length_503_cov_57.940357	7.7	36.1	8.4	26.1	2.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_15024	NODE_6730_length_603_cov_22.165838	0	0	25.3	23.7	0	0	-5.7	-5.6	not assigned.unknown	not assigned.unknown
MSGI1_112391	NODE_67307_length_110_cov_12.490909	16.3	14	1.7	4.1	0	0	3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_53368	NODE_6734_length_232_cov_108.866379	17.4	52.2	13.1	16.9	1.6	0	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_115173	NODE_6735_length_86_cov_62.337208	50.1	20.8	0	0	-1.3	0	6.6	5.4	not assigned.unknown	not assigned.unknown
MSGI1_64731	NODE_67383_length_195_cov_100.933334	108.3	193.1	65.2	190.3	0	1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_110399	NODE_6739_length_122_cov_483.286896	295.5	310.6	133.1	539.9	0	2	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_82165	NODE_6739_length_158_cov_168.132904	101.9	83.4	57.7	122.6	0	1.1	0	0	tetrapyrrole synthesis.magnesium chelatase	GUN5 (GENOMES UNCOUPLED 5) Encodes magnesium chelatase involved in plastid-to-nucleus signal transduction. similar to Mg protoporphyrin IX chelatase [Nicotiana tabacum] (GB:AAB97152.1); similar to protoporphyrin IX:Mg Chelatase [Antirrhinum majus] (GB:CA
MSGI1_69541	NODE_67396_length_183_cov_12.480874	9.2	14	0	0.6	0	0	0	4.5	fermentation.PDC	"PDC2 (PYRUVATE DECARBOXYLASE-2); pyruvate decarboxylase pyruvate decarboxylase-2 similar to PDC3 (PYRUVATE DECARBOXYLASE-3), pyruvate decarboxylase [Arabidopsis thaliana] (TAIR:AT5G01330.1); similar to pyruvate decarboxylase, putative [Arabidopsis thalia"
MSGI1_10769	NODE_674_length_732_cov_97.023224	7.4	28.5	41.6	7	1.9	-2.6	-2.5	2	major CHO metabolism.degradation.starch.starch cleavage	"BMY3 (beta-amylase 3); beta-amylase putative beta-amylase BMY3 (BMY3) similar to CT-BMY (BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to beta-amylase [Glycine max] (GB:CAI39245.1); contains InterPro domain Glycoside hy"
MSGI1_94458	NODE_67401_length_140_cov_12.528571	12.2	7.8	0.5	0.7	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_87952	NODE_6741_length_149_cov_6.275168	1	2	17.4	1.4	0	-3.6	-4.1	0	cell wall	leucine-rich repeat family protein  similar to disease resistance protein-related / LRR protein-related [Arabidopsis thaliana] (TAIR:AT2G26380.1); similar to disease resistance protein-related / LRR protein-related [Arabidopsis thaliana] (TAIR:AT1G33590.
MSGI1_46406	NODE_6744_length_262_cov_6.961832	18.4	9.9	0	1.5	0	0	5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_110398	NODE_67444_length_122_cov_12.393442	4.1	11.5	0.8	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_105410	NODE_6745_length_127_cov_7.897638	4.2	6.8	43.9	8.8	0	-2.3	-3.4	0	transport.amino acids	amino acid transporter family protein  similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT2G39130.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABE77592.1); contains InterPro domain Amino acid/p
MSGI1_119593	NODE_6745_length_61_cov_80.459015	26.7	33.3	0.4	1.2	0	0	6.1	4.8	not assigned.unknown	not assigned.unknown
MSGI1_109389	NODE_67462_length_123_cov_8.487804	23.6	9.4	3.4	3.8	0	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_90720	NODE_67493_length_145_cov_24.096552	17.8	21.5	0	0	0	0	5.2	5.4	misc.UDP glucosyl and glucoronyl transferases	"GATL2 (Galacturonosyltransferase-like 2); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with  putative galacturonosyltransferase activity. simil"
MSGI1_1475	NODE_6751_length_1722_cov_33.775841	4.4	36.5	4.5	7.8	3.1	0	0	2.2	hormone metabolism.abscisic acid.synthesis-degradation	"CCD8 (CAROTENOID CLEAVAGE DIOXYGENASE 8) Encodes a protein with similarity to carotenoid cleaving deoxygenases, the enzymes that cleave beta-carotene. Involved in the production of a graft transmissable signal to suppress axillary branching. Protein is l"
MSGI1_113669	NODE_6752_length_100_cov_253.619995	129.6	34.3	22.4	82.9	-1.9	1.9	2.5	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_119591	NODE_67539_length_61_cov_11.688524	8.4	12.8	0	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_2810	NODE_6756_length_1369_cov_26.026297	12.7	11.8	30	44.4	0	0	0	-1.9	protein.synthesis.initiation	eukaryotic translation initiation factor 2 family protein / eIF-2 family protein  similar to translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G21160.1); similar to eukaryotic translation initiation factor 2 family protein / eIF-2 family prot
MSGI1_37418	NODE_67576_length_310_cov_8.616129	7.1	28.5	17	31.5	2	0	0	0	hormone metabolism.gibberelin.synthesis-degradation.ent-kaurenoic acid hydroxylase/oxygenase	"CYP88A3 (ENT-KAURENOIC ACID HYDROXYLASE 1); oxygen binding Encodes an ent-kaurenoic acid hydroxylase, a  member of the CYP88A cytochrome p450 family. Identical to Ent-kaurenoic acid oxidase 1 (EC 1.14.13.79) (AtKAO1) (Cytochrome P450 88A3) (KAO1) [Arabid"
MSGI1_81572	NODE_6759_length_159_cov_102.132072	92.9	39.6	11.9	28.7	-1.2	0	3	0	lipid metabolism.FA desaturation.omega 6 desaturase	"FAD2 (FATTY ACID DESATURASE 2); delta12-fatty acid dehydrogenase Major enzyme responsible for the synthesis of 18:2 fatty acids in the endoplasmic reticulum. Contains His-rich motifs, which contribute to the interaction with the electron donor cytochrome"
MSGI1_74547	NODE_67614_length_172_cov_7.209302	7	2.8	19.2	0	0	-5.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_35015	NODE_67638_length_327_cov_14.773701	11.3	26.8	5	4.5	0	0	0	2.6	not assigned.unknown	not assigned.unknown
MSGI1_119581	NODE_67668_length_61_cov_6.278688	14.2	0.5	3.6	1.2	-4.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_66190	NODE_6767_length_191_cov_9.146597	0	0	21.4	0	0	-5.4	-5.4	0	not assigned.unknown	not assigned.unknown
MSGI1_76574	NODE_67698_length_168_cov_8.952381	3.1	11.4	18.7	5.7	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_119575	NODE_67745_length_61_cov_10.131147	7.3	13.5	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_117964	NODE_6776_length_63_cov_152.936508	34.7	59.6	0.4	0.4	0	0	6.4	7.2	not assigned.unknown	not assigned.unknown
MSGI1_99186	NODE_67773_length_134_cov_18.537313	13.9	11	48.6	14.4	0	-1.8	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_114959	NODE_6778_length_88_cov_30.193182	24.6	19.8	3.3	12.8	0	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_111426	NODE_6780_length_118_cov_106.686440	93.2	62.7	0	0	0	0	7.5	7	cell wall.precursor synthesis.UXS	"UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE); catalytic Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be cytosolic by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hem"
MSGI1_90718	NODE_6781_length_145_cov_170.303452	148.7	113.4	52.1	51.6	0	0	1.5	1.1	not assigned.unknown	not assigned.unknown
MSGI1_49892	NODE_6782_length_246_cov_45.902439	35.9	1.6	0.3	0.2	-4.5	0	6.9	0	not assigned.unknown	not assigned.unknown
MSGI1_74546	NODE_6783_length_172_cov_199.970932	86	37.5	25.1	35.3	-1.2	0	1.8	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_74546	NODE_6783_length_172_cov_199.970932	86	37.5	25.1	35.3	-1.2	0	1.8	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_49388	NODE_67830_length_248_cov_31.879032	26	100.5	47.5	6.6	2	-2.8	0	3.9	not assigned.unknown	not assigned.unknown
MSGI1_89321	NODE_6785_length_147_cov_156.551025	149.2	204.6	97.7	85.1	0	0	0	1.3	cell wall.cellulose synthesis.cellulose synthase	"CESA8 (CELLULASE SYNTHASE 8); cellulose synthase/ transferase, transferring glycosyl groups Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content,"
MSGI1_112630	NODE_67870_length_108_cov_18.157408	16.2	6.6	0	0	0	0	5	0	not assigned.unknown	not assigned.unknown
MSGI1_102661	NODE_6789_length_130_cov_5.407692	6.2	9.7	28.7	11.3	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_70919	NODE_6789_length_180_cov_22.250000	13.2	49.9	3.6	4	1.9	0	0	3.6	not assigned.unknown	not assigned.unknown
MSGI1_55205	NODE_67890_length_225_cov_8.537778	13.3	40.9	9.8	16.5	1.6	0	0	0	amino acid metabolism.synthesis.aromatic aa.phenylalanine.arogenate dehydratase / prephenate dehydratase	"prephenate dehydratase family protein  similar to PD1 (PREPHENATE DEHYDRATASE 1), prephenate dehydratase [Arabidopsis thaliana] (TAIR:AT2G27820.1); similar to prephenate dehydratase [Ipomoea trifida] (GB:AAS79603.1); contains InterPro domain Prephenate d"
MSGI1_20667	NODE_6790_length_490_cov_11.720408	2.3	1.8	22.4	10.1	0	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_43226	NODE_67921_length_277_cov_23.444044	27.5	0.9	7	0.6	-4.9	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_75050	NODE_6793_length_171_cov_21.233917	4.7	19.4	5.5	24	0	2.1	0	0	signalling.receptor kinases.leucine rich repeat II	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G10290.1); similar to Protein kinase [Medicago truncatula] (GB:ABE86996.1); contains"
MSGI1_49623	NODE_67933_length_247_cov_4.214575	4.5	3.7	24.2	4.1	0	-2.6	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_77588	NODE_67936_length_166_cov_24.680723	26.2	9.4	28.5	5.8	0	-2.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_105404	NODE_6798_length_127_cov_34.448818	8.8	0	38.2	27.5	0	0	-2.1	-5.8	not assigned.unknown	not assigned.unknown
MSGI1_80415	NODE_67980_length_161_cov_8.024845	10.8	0.5	1.1	0.2	-4.4	0	0	0	misc.cytochrome P450	"CYP82G1 (cytochrome P450, family 82, subfamily G, polypeptide 1); oxygen binding member of CYP82G similar to CYP82C4 (cytochrome P450, family 82, subfamily C, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31940.1); similar to CYP82C1p ["
MSGI1_45064	NODE_68017_length_268_cov_6.869403	4.5	4.6	34.6	4.6	0	-2.9	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_114293	NODE_6803_length_94_cov_97.755318	125.9	50.3	2.2	7.1	-1.3	0	5.8	2.8	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit At1g60390 precursor (Aromatic-rich glycoprotein At1g60390) [Arabidopsis Thaliana] (GB:O80760); similar to JP630, polygalacturonase"
MSGI1_119563	NODE_68055_length_61_cov_9.114754	2.4	4.3	18.7	10.3	0	0	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_57106	NODE_6806_length_218_cov_10.440367	9.5	33.8	11.5	16.7	1.8	0	0	0	protein.targeting.nucleus	AT-IMP (Arabidopsis thaliana importin alpha); protein transporter Encodes importin alpha involved in nuclear import. Identical to Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) (KAP1) [Arabidopsis Thaliana] (GB:Q96321;GB:O49599;GB:O81
MSGI1_111768	NODE_68061_length_115_cov_14.400000	11.8	13.1	0	0	0	0	4.6	4.7	protein.aa activation.glutamate-tRNA ligase	"glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative  similar to OVA9 (OVULE ABORTION 9), glutamine-tRNA ligase [Arabidopsis thaliana] (TAIR:AT1G25350.1); similar to putative tRNA synthetase [Oryza sativa (japonica culti"
MSGI1_111768	NODE_68061_length_115_cov_14.400000	11.8	13.1	0	0	0	0	4.6	4.7	tetrapyrrole synthesis.glu-tRNA synthetase	"glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative  similar to OVA9 (OVULE ABORTION 9), glutamine-tRNA ligase [Arabidopsis thaliana] (TAIR:AT1G25350.1); similar to putative tRNA synthetase [Oryza sativa (japonica culti"
MSGI1_48326	NODE_6808_length_253_cov_15.426877	16.2	8.8	1.1	3.2	0	0	3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_119559	NODE_6809_length_61_cov_26.918034	20.1	32.2	1.6	2.5	0	0	3.7	3.7	not assigned.unknown	not assigned.unknown
MSGI1_49622	NODE_6810_length_247_cov_6.582996	4.8	22.1	3.1	21.3	2.2	2.8	0	0	gluconeogenese/ glyoxylate cycle.PEPCK	"phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putative Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent). Identical to Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP carboxykinase)"
MSGI1_114852	NODE_68104_length_89_cov_29.865168	24.5	3.5	6.8	4.7	-2.8	0	1.8	0	misc.GDSL-motif lipase	GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G26430.1); similar to Os07g0586200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060129.1); similar to hypothetical pro
MSGI1_107360	NODE_68131_length_125_cov_3.144000	0.4	2.8	20.4	1.1	0	-4.2	-5.7	0	not assigned.unknown	not assigned.unknown
MSGI1_119556	NODE_68151_length_61_cov_59.196720	6.9	29.7	0	0	2.1	0	0	5.9	not assigned.unknown	not assigned.unknown
MSGI1_67455	NODE_68164_length_188_cov_15.388298	19.3	3.5	4.5	3.2	-2.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_32847	NODE_6817_length_343_cov_34.376095	25.5	30.4	58.4	49.4	0	0	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_119549	NODE_68219_length_61_cov_5.688525	1.7	3.8	14.8	11.5	0	0	-3.1	0	signalling.G-proteins	RabGAP/TBC domain-containing protein  similar to RAB GTPase activator [Arabidopsis thaliana] (TAIR:AT3G49350.1); similar to RabGAP/TBC [Medicago truncatula] (GB:ABE88406.1); similar to Os10g0518100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065072
MSGI1_101767	NODE_68225_length_131_cov_25.412214	26.7	9.8	5.6	12	0	0	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_27920	NODE_6823_length_391_cov_94.618927	174.6	49.6	60.5	31.3	-1.8	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_17464	NODE_6823_length_548_cov_17.799271	24.6	7	1	1.6	0	0	4.6	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"amidase family protein  similar to amidase family protein [Arabidopsis thaliana] (TAIR:AT5G07360.2); similar to amidase, putative [Brassica oleracea] (GB:ABD65012.1); contains InterPro domain Amidase; (InterPro:IPR000120)"
MSGI1_112752	NODE_6826_length_107_cov_92.775703	78.9	75.2	218.9	134.3	0	0	-1.5	0	amino acid metabolism.synthesis.central amino acid metabolism.alanine.alanine aminotransferase	AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2); alanine transaminase Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1 similar to GGT1 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1) [Arabidopsis thaliana] (TAIR:AT1G23310.1); similar to
MSGI1_112752	NODE_6826_length_107_cov_92.775703	78.9	75.2	218.9	134.3	0	0	-1.5	0	PS.aminotransferases peroxisomal	AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2); alanine transaminase Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1 similar to GGT1 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1) [Arabidopsis thaliana] (TAIR:AT1G23310.1); similar to
MSGI1_36120	NODE_6827_length_319_cov_8.313479	16.6	5.5	26.3	3.3	0	-3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_58315	NODE_68273_length_214_cov_10.247663	7.4	11.6	0.2	0.2	0	0	0	5.9	nucleotide metabolism.salvage.nucleoside kinases.uridine kinase	phosphoribulokinase/uridine kinase family protein  similar to phosphoribulokinase/uridine kinase family protein [Arabidopsis thaliana] (TAIR:AT1G26190.1); similar to uridine kinase [Dictyostelium discoideum AX4] (GB:XP_639121.1); similar to OSJNBa0079F16.
MSGI1_58315	NODE_68273_length_214_cov_10.247663	7.4	11.6	0.2	0.2	0	0	0	5.9	PS.calvin cyle.PRK	phosphoribulokinase/uridine kinase family protein  similar to phosphoribulokinase/uridine kinase family protein [Arabidopsis thaliana] (TAIR:AT1G26190.1); similar to uridine kinase [Dictyostelium discoideum AX4] (GB:XP_639121.1); similar to OSJNBa0079F16.
MSGI1_39566	NODE_68307_length_297_cov_9.747475	4.2	12.6	0.7	0.7	0	0	0	4.2	not assigned.unknown	not assigned.unknown
MSGI1_55203	NODE_68325_length_225_cov_11.831111	6.9	72.8	17.7	62.6	3.4	1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_111767	NODE_68350_length_115_cov_29.321739	25.5	0.6	10.3	4.9	-5.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_119539	NODE_68355_length_61_cov_28.114754	16.2	18.9	3.2	3.7	0	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_113668	NODE_68361_length_100_cov_23.270000	20.5	2.3	5.1	1.9	-3.2	0	0	0	cell wall.degradation.pectate lyases and polygalacturonases	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G41870.1); similar to Os05g0587000 [Oryz
MSGI1_67864	NODE_68371_length_187_cov_9.572192	10.6	14.2	0.2	0	0	0	5.7	4.8	RNA.regulation of transcription.GeBP like	DNA-binding storekeeper protein-related  similar to DNA-binding storekeeper protein-related [Arabidopsis thaliana] (TAIR:AT1G61730.1); similar to storekeeper protein [Solanum tuberosum] (GB:CAC39398.1); contains InterPro domain Protein of unknown function
MSGI1_56309	NODE_68373_length_221_cov_11.095022	7.2	54.3	38.4	4.3	2.9	-3.2	-2.4	3.7	RNA.regulation of transcription.C2H2 zinc finger family	"zinc finger (C2H2 type) family protein (ZAT11)  similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT3G53600.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE93962.1); contains InterPro domain Zinc finger, C2"
MSGI1_84669	NODE_6838_length_154_cov_184.233765	0.1	0	229.7	1.2	0	-7.6	-11.2	0	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase	"NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE3) Encodes  9-<i>cis</i>-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chl"
MSGI1_94449	NODE_68384_length_140_cov_5.721428	7.3	23.4	171.6	6.7	0	-4.7	-4.6	0	protein.postranslational modification	"CIPK16 (CIPK16); kinase Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.18), which has also been reported as a member of the CBL-interacting protein kinases (CIPK16). similar to CIPK5 (CBL-INTERACTING PROTEIN KINASE 5), kinase [Arab"
MSGI1_100922	NODE_68438_length_132_cov_24.272728	21.3	13.4	2	1.3	0	0	3.4	3.4	DNA.repair	DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); protein binding Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. Identical to DNA-damage-repair/toleration protein DRT100 precursor (DRT100) [Arabidopsis Thaliana] (GB:Q00874;G
MSGI1_79848	NODE_6844_length_162_cov_5.654321	0	0	1.7	12.6	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_99180	NODE_68449_length_134_cov_11.679105	22.8	11.9	4.2	4.4	0	0	2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_113667	NODE_6845_length_100_cov_54.189999	71.5	42.5	3	2.2	0	0	4.6	4.3	not assigned.unknown	not assigned.unknown
MSGI1_62915	NODE_6846_length_200_cov_76.065002	82.1	55	14.9	4.8	0	0	2.5	3.5	not assigned.unknown	not assigned.unknown
MSGI1_35558	NODE_6857_length_323_cov_56.241486	71.1	43.5	35.6	60.9	0	0	1	0	RNA.regulation of transcription.General Transcription	"nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative  similar to nascent polypeptide-associated complex (NAC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G73230.1); similar to tr"
MSGI1_33285	NODE_6857_length_340_cov_33.335293	30.1	19.4	3.9	10	0	0	2.9	0	cell wall	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29980.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); similar to Os01g0756600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044289.1); similar to Os01g0531400 [Oryza sativa (japon
MSGI1_44838	NODE_6859_length_269_cov_38.278809	0.1	0.1	106.8	0.5	0	-7.7	-10.1	0	not assigned.unknown	not assigned.unknown
MSGI1_117187	NODE_68599_length_69_cov_96.739128	24.5	29.7	12.4	35.6	0	1.5	0	0	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase	NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) chloroplast-targeted member of a family of  enzymes similar to nine-cis-epoxycarotenoid dioxygenase similar to NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5) [Arabidopsis thaliana] (TAIR:AT1G30100.1); similar
MSGI1_75045	NODE_686_length_171_cov_15.590643	14.7	28.8	47.8	6.5	0	-2.9	-1.7	2.1	not assigned.unknown	not assigned.unknown
MSGI1_9869	NODE_6860_length_767_cov_36.830509	38.6	57	40.9	25.7	0	0	0	1.1	hormone metabolism.auxin.induced-regulated-responsive-activated	ATB2; oxidoreductase Encodes ATB2. similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:AT1G60690.1); similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:AT1G60730.1); similar to aldo/keto reductase AKR [Maniho
MSGI1_39250	NODE_68633_length_299_cov_8.535117	10.8	0.1	0.9	0.1	-6.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_45751	NODE_68645_length_265_cov_9.426415	13.1	0.1	3.3	0.3	-7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_96780	NODE_68661_length_137_cov_8.051095	5.6	11.1	26.5	8.9	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_93685	NODE_68674_length_141_cov_5.617021	2.4	2.9	3.4	34.8	0	3.4	0	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_62539	NODE_6868_length_201_cov_12.228856	12.9	13.4	0.2	0	0	0	6	4.7	not assigned.unknown	not assigned.unknown
MSGI1_77062	NODE_68683_length_167_cov_7.670659	4.6	42	25.2	2.6	3.2	-3.3	-2.5	4	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. simi"
MSGI1_95197	NODE_68685_length_139_cov_46.985611	16	18.8	2.2	3.3	0	0	2.9	2.5	transport.misc	"permease, putative  Identical to Nucleobase-ascorbate transporter 6 (AtNAT6) (NAT6) [Arabidopsis Thaliana] (GB:Q27GI3;GB:Q3E869;GB:Q94CA7;GB:Q9FM07); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:AT5G49990.1); similar to"
MSGI1_119518	NODE_68706_length_61_cov_23.934425	3.9	6.5	55.8	14.8	0	-1.9	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_56587	NODE_6871_length_220_cov_5.854546	0.9	1.5	15.7	0.2	0	-6.3	-4.1	0	RNA.regulation of transcription.C2H2 zinc finger family	DNAJ heat shock N-terminal domain-containing protein  similar to DNAJ heat shock N-terminal domain-containing protein / cell division protein-related [Arabidopsis thaliana] (TAIR:AT3G11450.1); similar to DnaJ domain containing protein [Tetrahymena thermo
MSGI1_56587	NODE_6871_length_220_cov_5.854546	0.9	1.5	15.7	0.2	0	-6.3	-4.1	0	stress.abiotic.heat	"DNAJ heat shock protein, putative  similar to DNAJ heat shock N-terminal domain-containing protein (J11) [Arabidopsis thaliana] (TAIR:AT4G36040.1); similar to DnaJ-like protein [Phaseolus vulgaris] (GB:AAB36543.1); contains InterPro domain Heat shock pro"
MSGI1_117034	NODE_6873_length_70_cov_82.699997	19.3	14.7	64.3	12.7	0	-2.3	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_49621	NODE_68732_length_247_cov_9.765182	13.1	17.6	51.4	14	0	-1.9	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_89979	NODE_68771_length_146_cov_15.965754	16.6	43.6	19	28.8	1.4	0	0	0	RNA.transcription	RNA-dependent RNA polymerase family protein  similar to RNA-dependent RNA polymerase family protein [Arabidopsis thaliana] (TAIR:AT2G19920.1); similar to RNA-dependent RNA polymerase family protein [Arabidopsis thaliana] (TAIR:AT2G19930.1); similar to Os0
MSGI1_17220	NODE_68775_length_553_cov_9.061482	2	13.5	1.7	0.8	0	0	0	4.1	lipid metabolism.FA synthesis and FA elongation.ACP desaturase	"acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative  similar to SSI2 (fatty acid biosynthesis 2), acyl-[acyl-carrier-protein] desaturase [Arabidopsis thaliana] (TAIR:AT2G43710.1); similar to stearoyl acyl carrier protein"
MSGI1_62538	NODE_68813_length_201_cov_15.626865	13.7	17.1	0.2	0	0	0	6.1	5.1	transport.unspecified anions	anion exchange family protein  Identical to Boron transporter-like protein 2 [Arabidopsis Thaliana] (GB:Q9XI23); similar to anion exchanger [Arabidopsis thaliana] (TAIR:AT4G32510.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:A
MSGI1_119508	NODE_6882_length_61_cov_119.081970	12.5	35.1	7.2	1.6	1.5	0	0	4.5	stress.biotic	EDS1 (ENHANCED DISEASE SUSCEPTIBILITY 1); signal transducer/ triacylglycerol lipase Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases. similar to lipase class 3 family protein / disease resistance
MSGI1_3893	NODE_6883_length_1184_cov_27.633446	18.9	18.5	48	69.9	0	0	-1.3	-1.9	protein.synthesis.initiation	eukaryotic translation initiation factor 2 family protein / eIF-2 family protein  similar to translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G21160.1); similar to eukaryotic translation initiation factor 2 family protein / eIF-2 family prot
MSGI1_119504	NODE_68845_length_61_cov_22.622952	15.1	11	0	0	0	0	4.9	4.5	not assigned.unknown	not assigned.unknown
MSGI1_81560	NODE_68847_length_159_cov_4.842767	2.3	5.8	60.3	0.7	0	-6.4	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_107343	NODE_68854_length_125_cov_5.232000	8.4	2.6	12.8	1.1	0	-3.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_17463	NODE_6886_length_548_cov_22.330292	20.4	24.7	6.4	2.2	0	0	0	3.5	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G17680.1); similar to TIR-NBS type disease resistance protein [Populus trichocarpa] (GB:ABF81459"
MSGI1_68253	NODE_68883_length_186_cov_12.682796	14.3	11.4	0	0	0	0	4.8	4.5	not assigned.unknown	not assigned.unknown
MSGI1_119498	NODE_68891_length_61_cov_3.393443	2.2	6.5	19.1	15.2	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_119496	NODE_68896_length_61_cov_40.032787	8.6	20.7	0	0	0	0	0	5.4	not assigned.unknown	not assigned.unknown
MSGI1_50139	NODE_689_length_245_cov_11.567347	2.4	0.7	27.7	2.5	0	-3.5	-3.5	0	cell wall.modification	"XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6); hydrolase, acting on glycosyl bonds xyloglucan endotransglycosylase-related protein (XTR6) Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor (EC 2.4.1.207) (At-XTH23) (XTH-23) ("
MSGI1_50139	NODE_689_length_245_cov_11.567347	2.4	0.7	27.7	2.5	0	-3.5	-3.5	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6); hydrolase, acting on glycosyl bonds xyloglucan endotransglycosylase-related protein (XTR6) Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor (EC 2.4.1.207) (At-XTH23) (XTH-23) ("
MSGI1_6217	NODE_6891_length_958_cov_87.890396	25.3	80.9	41	26.2	1.7	0	0	1.6	RNA.regulation of transcription.GRAS transcription factor family	scarecrow-like transcription factor 11 (SCL11)  similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G46600.1); similar to GRAS4 [Solanum lycopersicum] (GB:ABD72960.1); contains InterPro domain GRAS transcription factor
MSGI1_6217	NODE_6891_length_958_cov_87.890396	25.3	80.9	41	26.2	1.7	0	0	1.6	development.unspecified	scarecrow-like transcription factor 11 (SCL11)  similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G46600.1); similar to GRAS4 [Solanum lycopersicum] (GB:ABD72960.1); contains InterPro domain GRAS transcription factor
MSGI1_88633	NODE_68917_length_148_cov_20.256756	25	7	33.7	5	0	-2.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_55201	NODE_6893_length_225_cov_65.791115	81	113.2	0	0	0	0	7.3	7.8	not assigned.unknown	not assigned.unknown
MSGI1_118118	NODE_6894_length_62_cov_65.209679	24	17.7	42.7	98	0	1.2	0	-2.5	not assigned.unknown	not assigned.unknown
MSGI1_74130	NODE_68946_length_173_cov_14.647399	16.4	39.4	7.7	4.9	0	0	0	3	not assigned.unknown	not assigned.unknown
MSGI1_60474	NODE_68968_length_207_cov_26.057972	26.5	1.1	3.1	0.6	-4.6	0	3.1	0	secondary metabolism.phenylpropanoids	transferase family protein  similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT2G39980.1); similar to AER [Nicotiana tabacum] (GB:AAM73656.1); contains InterPro domain Transferase; (InterPro:IPR003480)
MSGI1_90703	NODE_69003_length_145_cov_3.731035	7.3	27.1	11.6	11.9	1.9	0	0	0	transport.misc	permease  Identical to Nucleobase-ascorbate transporter 11 (AtNAT11) (NAT11) [Arabidopsis Thaliana] (GB:Q6SZ87;GB:Q8GWX5;GB:Q8LC52;GB:Q9SZK5); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:AT2G27810.1); similar to putativ
MSGI1_115362	NODE_69023_length_84_cov_67.666664	28.9	15.3	30.9	6.2	0	-2.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_73654	NODE_69028_length_174_cov_9.057471	9.4	10.6	0.6	0.4	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_29666	NODE_69047_length_372_cov_7.911290	4.9	6.9	25.4	6.7	0	-1.9	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_119480	NODE_69051_length_61_cov_25.229507	11.4	5.8	0	1.2	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_78118	NODE_69056_length_165_cov_9.793940	16.1	23.1	49.5	12	0	-2	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_49889	NODE_69057_length_246_cov_9.349593	11.1	25.5	0.9	3.4	0	0	0	2.9	not assigned.unknown	not assigned.unknown
MSGI1_25517	NODE_6906_length_420_cov_9.802381	19.9	11.7	3.9	3.8	0	0	2.4	0	misc.GDSL-motif lipase	GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G26430.1); similar to Os07g0586200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060129.1); similar to hypothetical pro
MSGI1_25517	NODE_6906_length_420_cov_9.802381	19.9	11.7	3.9	3.8	0	0	2.4	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_25517	NODE_6906_length_420_cov_9.802381	19.9	11.7	3.9	3.8	0	0	2.4	0	cell wall	GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G26430.1); similar to Os07g0586200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060129.1); similar to hypothetical pro
MSGI1_29577	NODE_69068_length_373_cov_11.273458	7	12.1	16.2	76.8	0	2.2	0	-2.7	cell wall	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_29577	NODE_69068_length_373_cov_11.273458	7	12.1	16.2	76.8	0	2.2	0	-2.7	stress.biotic	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_100916	NODE_69087_length_132_cov_25.765152	14.6	8.5	1	2.6	0	0	3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_59885	NODE_69089_length_209_cov_9.459331	11.5	5.8	0.2	0.2	0	0	5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_113029	NODE_6910_length_105_cov_142.009521	126.2	175.2	0.6	0	0	0	7.7	8.5	not assigned.unknown	not assigned.unknown
MSGI1_63275	NODE_69115_length_199_cov_9.572865	2.9	11.2	0.6	0.2	0	0	0	5.8	not assigned.unknown	not assigned.unknown
MSGI1_95191	NODE_69120_length_139_cov_8.071942	3.7	10.3	23.1	7.5	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_71296	NODE_6915_length_179_cov_11.162011	0.5	0.6	25.1	5.4	0	-2.2	-5.6	0	misc.cytochrome P450	"CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3); oxygen binding member of CYP82C similar to CYP82C4 (cytochrome P450, family 82, subfamily C, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31940.1); similar to CYP82C2 (c"
MSGI1_113598	NODE_6921_length_101_cov_27.306931	20.3	53.5	8.4	13.7	1.4	0	0	2	not assigned.unknown	not assigned.unknown
MSGI1_117393	NODE_6924_length_67_cov_84.537315	79.1	29.3	22.4	75.4	-1.4	1.8	1.8	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_104472	NODE_69312_length_128_cov_13.320312	1.1	9.8	24.4	1.1	0	-4.5	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_90699	NODE_69314_length_145_cov_6.641379	15.1	3.6	25	4.4	0	-2.5	0	0	N-metabolism.N-degradation.glutamate dehydrogenase	GDH1 (GLUTAMATE DEHYDROGENASE 1); oxidoreductase encodes the beta-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells. Identical to Glutamate dehydrogenase 1 (EC 1.4.1.3) (GD
MSGI1_117810	NODE_69334_length_64_cov_16.015625	2.7	17.2	3.1	6	2.7	0	0	0	signalling.receptor kinases.leucine rich repeat XI	"CLV1 (CLAVATA 1); ATP binding / kinase/ protein serine/threonine kinase Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negat"
MSGI1_113123	NODE_69359_length_104_cov_15.778846	17.6	19.4	3	0.9	0	0	2.6	4.4	not assigned.unknown	not assigned.unknown
MSGI1_13960	NODE_6938_length_631_cov_16.275753	12.4	14.8	0.2	0.2	0	0	6	6.2	not assigned.unknown	not assigned.unknown
MSGI1_59883	NODE_6939_length_209_cov_130.746414	71.9	50.5	5.4	7.2	0	0	3.7	2.8	stress.abiotic.drought/salt	dehydration-responsive family protein  similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G18030.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G10440.1); similar to dehydration-responsi
MSGI1_72728	NODE_6941_length_176_cov_151.000000	163.5	41.5	0.2	0	-2	0	9.7	6.4	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase, putative  similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to LOX1 (Lipoxygenase 1), lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G55020.1); similar to lipoxygenase, putati"
MSGI1_38678	NODE_69421_length_302_cov_7.205298	3.9	5.2	37.5	4.8	0	-3	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_24594	NODE_6944_length_432_cov_14.342592	7.1	29.2	2.7	18.7	2	2.8	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	auxin-responsive family protein  similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G19840.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE79953.1); contains InterPro domain Auxin responsive SAUR protein;
MSGI1_41543	NODE_69447_length_286_cov_10.737762	2.2	8.3	33.8	1.7	0	-4.3	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_112886	NODE_6949_length_106_cov_14.188680	12.3	9.3	0	0	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_114647	NODE_6949_length_91_cov_140.549454	26.4	11.3	6.7	22.5	0	0	2	0	mitochondrial electron transport / ATP synthesis.F1-ATPase	"ATP synthase beta chain, mitochondrial, putative  Identical to ATP synthase subunit beta-3, mitochondrial precursor (EC 3.6.3.14) [Arabidopsis Thaliana] (GB:Q9C5A9); similar to ATP synthase beta chain 1, mitochondrial [Arabidopsis thaliana] (TAIR:AT5G086"
MSGI1_82764	NODE_69503_length_157_cov_9.751593	9.9	15	0	0	0	0	0	4.9	not assigned.unknown	not assigned.unknown
MSGI1_3630	NODE_6951_length_1224_cov_34.964870	26.6	35.4	61.7	42.8	0	0	-1.2	0	cell wall.precursor synthesis.MUR4	"MUR4 (MURUS 4); catalytic encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-reside"
MSGI1_15313	NODE_6958_length_595_cov_64.050423	51.1	99.2	29.3	47.8	0	0	0	1.1	cell wall	"thaumatin, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G24180.1); similar to Thaumatin, pathogenesis-related [Medicago truncatula] (GB:ABE77922.1); similar to Os03g0243900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049531"
MSGI1_15313	NODE_6958_length_595_cov_64.050423	51.1	99.2	29.3	47.8	0	0	0	1.1	stress.biotic	"thaumatin, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G24180.1); similar to Thaumatin, pathogenesis-related [Medicago truncatula] (GB:ABE77922.1); similar to Os03g0243900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049531"
MSGI1_73651	NODE_69592_length_174_cov_6.522988	2.3	7	24.8	2.1	0	-3.6	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_71765	NODE_6963_length_178_cov_223.662918	122.3	73.9	44.2	82.2	0	0	1.5	0	transport.p- and v-ATPases.H+-transporting two-sector ATPase	"AVA-P1 (vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 1); ATPase/ hydrogen ion transporting ATPase, rotational mechanism vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p1) Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 4 (EC 3."
MSGI1_111055	NODE_6967_length_121_cov_457.281006	133.6	281.5	78.9	183.6	1.1	1.2	0	0	S-assimilation.APS	"APS1 (ATP sulfurylase 3) encodes ATP sulfurylase, the first enzyme in the sulfate assimilation pathway of Arabidopsis. similar to APS3 (ATP sulfurylase 2), sulfate adenylyltransferase (ATP) [Arabidopsis thaliana] (TAIR:AT4G14680.1); similar to APS4 [Arab"
MSGI1_79839	NODE_69672_length_162_cov_6.981482	1.2	6.8	20.7	0.5	0	-5.4	-4.1	0	protein.postranslational modification	"CIPK25 (CBL-INTERACTING PROTEIN KINASE 25); kinase member of AtCIPKs similar to CIPK5 (CBL-INTERACTING PROTEIN KINASE 5), kinase [Arabidopsis thaliana] (TAIR:AT5G10930.1); similar to CBL-interacting protein kinase 6 [Populus trichocarpa] (GB:ABJ91234.1);"
MSGI1_119455	NODE_69707_length_61_cov_18.065575	13.8	10.4	18	32.1	0	0	0	-1.6	protein.folding	"chaperonin, putative  similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT5G16070.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96914.1); similar to Chaperonin complex component, TCP-1 zeta subunit (CCT6) (ISS) [Ostreococcus taur"
MSGI1_26694	NODE_6972_length_405_cov_67.069138	33	36.7	114.7	34.7	0	-1.7	-1.8	0	transport.potassium	AKT2 (Arabidopsis K+ transporter 2); cyclic nucleotide binding / inward rectifier potassium channel Encodes a photosynthate- and light-dependent inward rectifying potassium channel with unique gating properties that are regulated by phosphorylation.  Exp
MSGI1_73649	NODE_69759_length_174_cov_17.143679	37.1	13.9	7.9	9.4	-1.4	0	2.2	0	protein.degradation.subtilases	SLP3 (Subtilisin-like serine protease 3); subtilase Encodes a novel subtilisin-like serine protease. similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G30020.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530
MSGI1_73649	NODE_69759_length_174_cov_17.143679	37.1	13.9	7.9	9.4	-1.4	0	2.2	0	cell wall	SLP3 (Subtilisin-like serine protease 3); subtilase Encodes a novel subtilisin-like serine protease. similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G30020.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530
MSGI1_95990	NODE_69776_length_138_cov_6.869565	1.6	0.9	24.9	2.5	0	-3.3	-4	0	RNA.regulation of transcription.MYB-related transcription factor family	myb family transcription factor  similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G37260.1); similar to putative At5g37260 [Lycopersicon peruvianum] (GB:AAX44338.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012
MSGI1_65444	NODE_6986_length_193_cov_73.031090	60.2	34.7	13.2	19.3	0	0	2.2	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S28 (RPS28B)  Identical to 40S ribosomal protein S28-1 (RPS28B) [Arabidopsis Thaliana] (GB:Q9SR73); similar to 40S ribosomal protein S28 (RPS28A) [Arabidopsis thaliana] (TAIR:AT3G10090.1); similar to ribosomal protein S28 [Prunus per
MSGI1_102641	NODE_69878_length_130_cov_6.700000	0.2	2.6	57.7	2.1	0	-4.8	-8.2	0	amino acid metabolism.degradation.aspartate family.lysine	LKR (SACCHAROPINE DEHYDROGENASE)  Identical to Alpha-aminoadipic semialdehyde synthase (LKR/SDH) (cAt-LKR/SDH) [Includes: Lysine ketoglutarate reductase (EC 1.5.1.8) (LKR); Saccharopine dehydrogenase (EC 1.5.1.9) (SDH) (cAt-SDH)] (LKR/SDH) [Arabidopsis T
MSGI1_119449	NODE_69926_length_61_cov_12.196721	13.8	6.8	0	0	0	0	4.8	0	protein.synthesis.misc ribososomal protein	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome Encodes a cytoplasmic ribosomal protein. Identical to 60S ribosomal protein L3-1 (Protein EMBRYO DEFECTIVE 2207) (ARP1) [Arabidopsis Thaliana] (GB:P17094;GB:O82401;GB:Q42055;GB:Q9
MSGI1_16219	NODE_6993_length_573_cov_17.600349	16.9	2.2	17.1	7.5	-2.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_48322	NODE_6996_length_253_cov_32.691700	35.9	17.5	0.2	0	0	0	7.5	5.1	PS.calvin cyle.rubisco interacting	"CPN60A (chloroplast / 60 kDa chaperonin alpha subunit); ATP binding / protein binding / unfolded protein binding Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding.  Mutants display aberrant chloroplast and embryo development."
MSGI1_70908	NODE_6999_length_180_cov_78.366669	117.5	134	51.5	226.4	0	2.1	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_108300	NODE_69998_length_124_cov_17.056452	27.5	8	0.3	0	-1.8	0	6.5	0	not assigned.unknown	not assigned.unknown
MSGI1_77056	NODE_70004_length_167_cov_4.976048	2.4	3.6	16.9	10.4	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_62908	NODE_70017_length_200_cov_35.764999	30.2	32.2	26.4	8.8	0	0	0	1.9	not assigned.unknown	not assigned.unknown
MSGI1_77055	NODE_7003_length_167_cov_55.538921	28.1	26.2	7.9	14.1	0	0	1.8	0	amino acid metabolism.degradation.glutamate family.glutamine	"GCN5-related N-acetyltransferase, putative  similar to GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] (TAIR:AT1G03150.1); similar to H0410G08.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67655.1); similar to Os04g063580"
MSGI1_28382	NODE_7018_length_386_cov_20.417099	3.6	8.6	25.6	18	0	0	-2.8	0	secondary metabolism.N misc.alkaloid-like	"strictosidine synthase family protein  similar to YLS2 (yellow-leaf-specific gene 2), strictosidine synthase [Arabidopsis thaliana] (TAIR:AT3G51430.1); similar to mucin-like protein [Oryza sativa] (GB:AAG13594.1); contains InterPro domain Strictosidine s"
MSGI1_117547	NODE_7018_length_66_cov_66.984848	44.1	74.1	26.5	22.2	0	0	0	1.7	not assigned.unknown	not assigned.unknown
MSGI1_113799	NODE_7020_length_99_cov_92.444443	79.4	17.7	0.3	0	-2.2	0	8	5.1	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G38180.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE91665.1); contains InterPro domain Lipolytic en"
MSGI1_65443	NODE_7023_length_193_cov_11.994819	13	14.4	0.2	0	0	0	6	4.8	not assigned.unknown	not assigned.unknown
MSGI1_10745	NODE_7024_length_733_cov_18.403820	1.6	11.1	7.2	37.7	0	2.4	0	-1.8	transport.amino acids	"lysine and histidine specific transporter, putative  similar to LHT1 (LYSINE HISTIDINE TRANSPORTER 1), amino acid permease/ amino acid transporter [Arabidopsis thaliana] (TAIR:AT5G40780.1); similar to lysine and histidine specific transporter, putative ["
MSGI1_87270	NODE_70284_length_150_cov_11.206667	1.8	13.5	62	16.4	0	-1.9	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_33148	NODE_7030_length_341_cov_22.354839	31.3	5.5	3.7	3.4	-2.5	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_117288	NODE_7031_length_68_cov_27.338236	17.1	2	1.5	2.3	-3.1	0	3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_82761	NODE_70320_length_157_cov_8.885350	2.8	11.5	0	0	0	0	0	4.5	secondary metabolism.phenylpropanoids	"4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0"
MSGI1_112019	NODE_7038_length_113_cov_177.318588	153.8	76.5	81.9	77.6	-1	0	0	0	secondary metabolism.isoprenoids.non-mevalonate pathway	geranylgeranyl reductase Encodes for a multifunctional protein with geranylgeranyl reductase activity shown to catalyze the reduction of prenylated geranylgeranyl-chlorophyll a to phytyl-chlorophyll a (chlorophyll a) and free geranylgeranyl pyrophosphate
MSGI1_119433	NODE_70387_length_61_cov_11.754098	13.8	12.2	0	0	0	0	4.8	4.6	misc.alcohol dehydrogenases	"allyl alcohol dehydrogenase, putative  similar to AT-AER (ALKENAL REDUCTASE), 2-alkenal reductase [Arabidopsis thaliana] (TAIR:AT5G16970.1); similar to NADP-dependent oxidoreductase, putative [Arabidopsis thaliana] (TAIR:AT3G03080.1); similar to NADP-dep"
MSGI1_65442	NODE_70393_length_193_cov_6.113990	5.3	84.7	13.7	56	4	2	0	0	cell wall	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20160.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_65442	NODE_70393_length_193_cov_6.113990	5.3	84.7	13.7	56	4	2	0	0	protein.degradation.subtilases	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20160.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_43058	NODE_70401_length_278_cov_4.672662	2.1	3.2	18.5	10.8	0	0	-3.1	0	misc.cytochrome P450	"CYP707A4 (cytochrome P450, family 707, subfamily A, polypeptide 4); oxygen binding Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. similar to CYP707A1 (cytochrome P450, family 707, subfam"
MSGI1_95174	NODE_70456_length_139_cov_5.208633	5.8	13.8	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_35844	NODE_7047_length_321_cov_55.825546	114	52.2	75.4	78.1	-1.1	0	0	0	redox.peroxiredoxin	"peroxiredoxin type 2, putative  similar to TPX1 (THIOREDOXIN-DEPENDENT PEROXIDASE 1), antioxidant [Arabidopsis thaliana] (TAIR:AT1G65980.1); similar to Os06g0625500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058113.1); similar to peroxiredoxin [H"
MSGI1_58651	NODE_7059_length_213_cov_55.389671	6	27.1	18.1	36.9	2.2	0	0	0	cell wall	MYB111 (myb domain protein 111); DNA binding / transcription factor Encodes a putative transcription factor (MYB48). Identical to Transcription factor MYB48 (Myb-related protein 48) (AtMYB48) (MYB48) [Arabidopsis Thaliana] (GB:Q9LX82;GB:Q4JL82;GB:Q67YJ3)
MSGI1_58651	NODE_7059_length_213_cov_55.389671	6	27.1	18.1	36.9	2.2	0	0	0	RNA.regulation of transcription.MYB domain transcription factor family	MYB111 (myb domain protein 111); DNA binding / transcription factor Encodes a putative transcription factor (MYB48). Identical to Transcription factor MYB48 (Myb-related protein 48) (AtMYB48) (MYB48) [Arabidopsis Thaliana] (GB:Q9LX82;GB:Q4JL82;GB:Q67YJ3)
MSGI1_22038	NODE_7060_length_469_cov_18.635395	13.2	15.1	51.9	22.2	0	-1.2	-2	0	redox.glutaredoxins	glutaredoxin family protein  similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G10630.1); similar to Os01g0235900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042526.1); similar to hypothetical protein MtrDRAFT_AC139526g15v1 [Me
MSGI1_59538	NODE_70604_length_210_cov_12.604762	6.1	12.3	0.7	0.4	0	0	0	4.9	cell wall	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G30600.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabid"
MSGI1_59538	NODE_70604_length_210_cov_12.604762	6.1	12.3	0.7	0.4	0	0	0	4.9	protein.degradation.subtilases	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G30600.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabid"
MSGI1_69528	NODE_70605_length_183_cov_6.306011	3.9	10	32	9.2	0	-1.8	-3	0	secondary metabolism.flavonoids.flavonols	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to SRG1 (SENESCENCE-RELATED GENE 1), oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom eac"
MSGI1_119417	NODE_70613_length_61_cov_26.032787	15.7	13.7	0	0	0	0	5	4.8	amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine	"ATNIFS1/NIFS1 (ARABIOPSIS THALIANA NITROGEN FIXATION S HOMOLOG 1); cysteine desulfurase/ transaminase cysteine desulfurase whose activity is dependent on AtSufE activation. Identical to Cysteine desulfurase 1, mitochondrial precursor (EC 2.8.1.7) (Protei"
MSGI1_102632	NODE_70619_length_130_cov_8.369231	27.1	8.2	7.1	5.5	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_5249	NODE_7063_length_1035_cov_16.306280	11.5	15.9	0	0	0	0	4.5	5	DNA.synthesis/chromatin structure	"DEAD/DEAH box helicase, putative (RH10)  Identical to DEAD-box ATP-dependent RNA helicase 10 (EC 3.6.1.-) (RH10) [Arabidopsis Thaliana] (GB:Q8GY84;GB:Q8LA24;GB:Q9FME1;GB:Q9ZS10); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT"
MSGI1_119416	NODE_70638_length_61_cov_24.131147	14.2	21.2	0	0	0	0	4.8	5.4	not assigned.unknown	not assigned.unknown
MSGI1_72721	NODE_70639_length_176_cov_11.278409	15.6	2.1	8	2.5	-2.9	0	0	0	secondary metabolism.wax	"very-long-chain fatty acid condensing enzyme, putative  Identical to 3-ketoacyl-CoA synthase 5 (EC 2.3.1.-) (KCS-5) (Very-long-chain fatty acid condensing enzyme 5) (VLCFA condensing enzyme 5) (KCS5) [Arabidopsis Thaliana] (GB:Q9C6L5;GB:Q84W57;GB:Q8L8L0)"
MSGI1_6698	NODE_7065_length_927_cov_65.281555	36	33.5	13.2	32.6	0	0	1.4	0	cell wall.pectin*esterases.PME	pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT4G33220.1); similar to Pectinesterase PPE8B precursor (Pectin methylesterase) (PE) (GB:Q43062); similar to pectin methylesterase PME1 [Vitis vinifera]
MSGI1_36961	NODE_7067_length_313_cov_162.041534	118.7	48	31.5	45.2	-1.3	0	1.9	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L28 (RPL28A)  Identical to 60S ribosomal protein L28-1 (RPL28A) [Arabidopsis Thaliana] (GB:O82204); similar to 60S ribosomal protein L28 (RPL28C) [Arabidopsis thaliana] (TAIR:AT4G29410.2); similar to unknown [Solanum tuberosum] (GB:A
MSGI1_6142	NODE_707_length_963_cov_16.440290	5.2	2.3	44.1	0.1	0	-8.8	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_62173	NODE_70701_length_202_cov_8.445544	16.3	4.7	29.7	6.9	0	-2.1	0	0	signalling.receptor kinases.DUF 26	"protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23150.1); similar to CRK10 (CYSTEINE-RICH RLK10), kinase [Arabidopsis thaliana] (TAIR:AT4G23180.1); similar to CRK6 (CYSTEINE-RICH RLK 6), kinase [Ar"
MSGI1_82758	NODE_70703_length_157_cov_11.121019	5	11	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_20768	NODE_70713_length_488_cov_20.143442	3.2	19	12.9	3.5	2.6	0	0	2.4	RNA.processing.ribonucleases	"CCR4-NOT transcription complex protein, putative  similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT3G44260.1); similar to CCR4 associated factor 1-related protein [Capsicum annuum] (GB:ABG66307.1); contains Inter"
MSGI1_79217	NODE_7072_length_163_cov_41.159508	24.3	16.9	0	0	0	0	5.6	5.1	not assigned.unknown	not assigned.unknown
MSGI1_81551	NODE_70754_length_159_cov_9.358491	5.3	8.9	31.2	17.8	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_33510	NODE_70768_length_338_cov_7.639053	7.5	10.5	0	0.1	0	0	0	6.7	not assigned.unknown	not assigned.unknown
MSGI1_108288	NODE_70770_length_124_cov_6.169355	7.4	5.6	42.2	5.7	0	-2.9	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_39052	NODE_708_length_300_cov_10.723333	5.3	6.4	33.2	2.2	0	-3.9	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_119402	NODE_70859_length_61_cov_97.868851	7.3	29.8	0	0	2	0	0	5.9	not assigned.unknown	not assigned.unknown
MSGI1_35287	NODE_7086_length_325_cov_29.726154	1.1	2.3	72.7	1.3	0	-5.8	-6	0	not assigned.unknown	not assigned.unknown
MSGI1_21692	NODE_7088_length_474_cov_13.331223	20.2	0.7	0.3	0.1	-4.9	0	6.1	0	protein.degradation.ubiquitin.E3.RING	"RHA2A (RING-H2 finger A2A); protein binding / zinc ion binding Encodes a putative RING-H2 finger protein RHA2a. Identical to RING-H2 zinc finger protein RHA2a (RHA2A) [Arabidopsis Thaliana] (GB:Q9ZT50); similar to RHA2B (RING-H2 FINGER PROTEIN 2B), prote"
MSGI1_85292	NODE_70884_length_153_cov_4.732026	6.1	3.3	40.2	14.3	0	-1.5	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_119399	NODE_70885_length_61_cov_17.786884	4.1	4.3	7.2	19.8	0	0	0	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_119398	NODE_70888_length_61_cov_16.639345	10.3	13.7	0.4	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_10008	NODE_7094_length_761_cov_22.270697	17.7	19.9	49.5	24.8	0	0	-1.5	0	"RNA.regulation of transcription.CCAAT box binding factor family, HAP2"	"CCAAT-binding transcription factor (CBF-B/NF-YA) family protein  Identical to Nuclear transcription factor Y subunit A-8 (AtNF-YA-8) (NFYA8) [Arabidopsis Thaliana] (GB:Q9LNP6); similar to HAP2C (Heme activator protein (yeast) homolog 2C), transcription f"
MSGI1_85291	NODE_70956_length_153_cov_10.921569	0	15.5	1.4	20.2	5	3.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_56581	NODE_70956_length_220_cov_11.109091	11.4	8.8	0.3	0.2	0	0	5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_117959	NODE_70958_length_63_cov_21.841270	13	11.3	0	0.4	0	0	4.7	4.8	not assigned.unknown	not assigned.unknown
MSGI1_53361	NODE_70969_length_232_cov_7.094828	10.4	0.1	3	2.1	-6.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_34912	NODE_7098_length_328_cov_58.518291	54.1	29.2	20.5	13.8	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_36787	NODE_7101_length_314_cov_7.707006	0.8	3.9	26.5	9.5	0	0	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_119389	NODE_71020_length_61_cov_21.377048	11.2	37.4	31.1	40.4	1.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_36000	NODE_71029_length_320_cov_8.475000	5.3	4.2	19.3	0.5	0	-5.3	0	0	misc.cytochrome P450	"cytochrome P450, putative  similar to CYP81D2 (cytochrome P450, family 81, subfamily D, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37360.1); similar to CYP81D3 (cytochrome P450, family 81, subfamily D, polypeptide 3), oxygen binding"
MSGI1_96763	NODE_71041_length_137_cov_14.635036	15.4	9.7	0	0	0	0	4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_79831	NODE_71068_length_162_cov_13.851851	37.6	33.1	9.8	8.3	0	0	1.9	2	not assigned.unknown	not assigned.unknown
MSGI1_33147	NODE_71118_length_341_cov_7.806452	4.5	21	8.6	3.7	2.2	0	0	2.5	not assigned.unknown	not assigned.unknown
MSGI1_119385	NODE_7113_length_61_cov_186.852463	130.4	148.7	138	270.2	0	1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_51291	NODE_7115_length_240_cov_133.295837	73.3	46	26.5	36.2	0	0	1.5	0	mitochondrial electron transport / ATP synthesis.F1-ATPase	"ATP synthase gamma chain, mitochondrial (ATPC)  Identical to ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) (ATPC) [Arabidopsis Thaliana] (GB:Q96250); similar to ATPC2 (ATP synthase gamma chain 2) [Arabidopsis thaliana] (TAIR:AT1G15700.1"
MSGI1_12459	NODE_7116_length_675_cov_96.665184	39.6	51.8	19.6	18.6	0	0	0	1.5	not assigned.unknown	not assigned.unknown
MSGI1_95980	NODE_71160_length_138_cov_38.905796	32.3	32.9	64.7	18.4	0	-1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_113122	NODE_71177_length_104_cov_11.269231	8.2	4.8	48.5	2.4	0	-4.3	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_81545	NODE_712_length_159_cov_74.194969	78.5	63.7	0	0	0	0	7.3	7	protein.synthesis.misc ribososomal protein	40S ribosomal protein S7 (RPS7A)  Identical to 40S ribosomal protein S7-1 (RPS7A) [Arabidopsis Thaliana] (GB:Q9C514); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.2); similar to 40S ribosomal protein S7-like protein [
MSGI1_116892	NODE_71202_length_71_cov_17.802816	11.6	7.1	0	0	0	0	4.5	0	secondary metabolism.simple phenols	"LAC12 (laccase 12); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to LAC3 (laccase 3), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G30210.1); simila"
MSGI1_63269	NODE_71220_length_199_cov_5.482412	7.8	96.4	65.3	21.2	3.6	-1.6	-3.1	2.2	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_63269	NODE_71220_length_199_cov_5.482412	7.8	96.4	65.3	21.2	3.6	-1.6	-3.1	2.2	hormone metabolism.ethylene.induced-regulated-responsive-activated	"universal stress protein (USP) family protein  similar to ethylene-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G09740.1); similar to universal stress protein family [Medicago truncatula] (GB:ABE78101.1); contains InterPro domain Universa"
MSGI1_105368	NODE_71239_length_127_cov_9.661417	8.9	13.6	0	0	0	0	0	4.8	protein.degradation.subtilases	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to SLP2 (subtilisin-like serine protease 2), subtilase [Arabidopsis th"
MSGI1_107328	NODE_71247_length_125_cov_6.784000	10.9	59.3	14.6	8.1	2.4	0	0	2.9	not assigned.unknown	not assigned.unknown
MSGI1_82133	NODE_71249_length_158_cov_5.037975	5.3	2.1	24	3.4	0	-2.8	-2.2	0	transporter.sugars	"ATINT2 (INOSITOL TRANSPORTER 2); carbohydrate transporter/ sugar porter  Identical to Probable inositol transporter 2 (INT2) [Arabidopsis Thaliana] (GB:Q9C757); similar to ATINT3 (INOSITOL TRANSPORTER 3), carbohydrate transporter/ sugar porter [Arabidops"
MSGI1_96758	NODE_71323_length_137_cov_5.744525	5.3	3.4	24.3	3.3	0	-2.9	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_89293	NODE_71327_length_147_cov_12.959184	0.4	12.4	0	0	5	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_85915	NODE_7134_length_152_cov_23.835526	14.5	23.8	11.9	4.2	0	0	0	2.5	not assigned.unknown	not assigned.unknown
MSGI1_82754	NODE_7136_length_157_cov_6.312102	7	29.9	2.9	8.7	2.1	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_33284	NODE_7137_length_340_cov_47.035294	27.2	19.7	3	7.2	0	0	3.2	0	cell wall	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29980.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); similar to Os01g0756600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044289.1); similar to Os01g0531400 [Oryza sativa (japon
MSGI1_27064	NODE_7139_length_401_cov_61.940151	48.4	19	7.8	8	-1.3	0	2.6	0	protein.synthesis.misc ribososomal protein	"STV1 (SHORT VALVE1); structural constituent of ribosome RPL24B encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B. Mutants showed defects in"
MSGI1_115737	NODE_7139_length_81_cov_526.864197	113.3	356.3	55.9	211.8	1.7	1.9	1	0	not assigned.unknown	not assigned.unknown
MSGI1_56837	NODE_71437_length_219_cov_8.127854	0.1	10.5	0	0	6.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_37416	NODE_7146_length_310_cov_14.725806	10.7	12.1	0.4	0.1	0	0	4.7	6.9	transport.amino acids	ATPTR2-B (NITRATE TRANSPORTER 1); transporter Encodes a peptide transport gene that mediates the transport of di- and tripeptides. Identical to Peptide transporter PTR2 (Histidine-transporting protein) (PTR2) [Arabidopsis Thaliana] (GB:P46032); similar t
MSGI1_37416	NODE_7146_length_310_cov_14.725806	10.7	12.1	0.4	0.1	0	0	4.7	6.9	transport.peptides and oligopeptides	ATPTR2-B (NITRATE TRANSPORTER 1); transporter Encodes a peptide transport gene that mediates the transport of di- and tripeptides. Identical to Peptide transporter PTR2 (Histidine-transporting protein) (PTR2) [Arabidopsis Thaliana] (GB:P46032); similar t
MSGI1_77568	NODE_71469_length_166_cov_16.265060	19.3	26.7	1.9	1.1	0	0	3.3	4.6	not assigned.unknown	not assigned.unknown
MSGI1_78107	NODE_7154_length_165_cov_228.800003	109.6	24.7	13.8	49.5	-2.1	1.8	3	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_84645	NODE_71587_length_154_cov_3.292208	5.9	5.9	17.4	1.2	0	-3.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_51559	NODE_71611_length_239_cov_9.853557	15.2	2	5.5	3	-2.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_116668	NODE_7163_length_73_cov_45.493149	28.4	12.8	0	0	0	0	5.8	4.7	not assigned.unknown	not assigned.unknown
MSGI1_66172	NODE_7165_length_191_cov_6.727749	1.5	2	17.3	9.5	0	0	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_77566	NODE_7174_length_166_cov_18.909639	19.9	24.4	58.9	50.7	0	0	-1.6	0	transport.metabolite transporters at the envelope membrane	phosphate translocator-related  similar to phosphate translocator-related [Arabidopsis thaliana] (TAIR:AT4G32390.1); similar to Protein of unknown function DUF250 [Medicago truncatula] (GB:ABE88491.1); contains InterPro domain Protein of unknown function
MSGI1_15404	NODE_7177_length_593_cov_58.553120	40.9	46.6	1.5	1.5	0	0	4.8	5	not assigned.unknown	not assigned.unknown
MSGI1_103539	NODE_71781_length_129_cov_10.209302	13.9	1.2	6.6	3.7	-3.5	0	0	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"tropinone reductase, putative / tropine dehydrogenase, putative  similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29290.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japo"
MSGI1_66171	NODE_7183_length_191_cov_23.125654	24.2	2.3	5.8	8.3	-3.4	0	2.1	0	cell wall.degradation.pectate lyases and polygalacturonases	JP630; polygalacturonase Encodes aromatic rich glycoprotein JP630. Identical to Probable polygalacturonase non-catalytic subunit JP630 precursor (Aromatic-rich glycoprotein JP630) (JP630) [Arabidopsis Thaliana] (GB:P92982;GB:Q9S9K5); similar to BURP doma
MSGI1_84644	NODE_7185_length_154_cov_8.370130	1.3	1	17.6	6.3	0	0	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_97500	NODE_71856_length_136_cov_5.823529	2	5.9	13.1	0.5	0	-4.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_40805	NODE_71897_length_290_cov_14.189655	10.1	23.2	0.4	1	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_23248	NODE_7197_length_453_cov_83.077263	44.2	17.3	13.4	16.4	-1.4	0	1.7	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S23 (RPS23B)  Identical to 40S ribosomal protein S23-2 (S12) (RPS23B) [Arabidopsis Thaliana] (GB:P49201;GB:Q9LYY9); similar to 40S ribosomal protein S23 (RPS23A) [Arabidopsis thaliana] (TAIR:AT3G09680.1); similar to Ribosomal protei
MSGI1_62530	NODE_71975_length_201_cov_17.412935	11.5	27	2	3.2	0	0	0	3.1	not assigned.unknown	not assigned.unknown
MSGI1_21691	NODE_7205_length_474_cov_79.297470	97.3	140.8	5.7	6.3	0	0	4.1	4.5	development.unspecified	"senescence-associated protein, putative  similar to germination protein-related [Arabidopsis thaliana] (TAIR:AT3G29970.1); similar to HvB12D [Hordeum vulgare subsp. vulgare] (GB:CAA54065.1); contains InterPro domain B12D; (InterPro:IPR010530)"
MSGI1_103536	NODE_72075_length_129_cov_6.674418	2.6	6.1	22.7	5.5	0	0	-3.1	0	protein.degradation.ubiquitin.E3.RING	RHB1A (RING-H2 finger B1A); protein binding / zinc ion binding  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G41350.1); similar to Os10g0142100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064147.1)
MSGI1_114134	NODE_7218_length_96_cov_33.062500	39.3	11.5	13	10.9	-1.8	0	1.6	0	misc.peroxidases	"peroxidase 50 (PER50) (P50) (PRXR2)  Identical to Peroxidase 50 precursor (EC 1.11.1.7) (Atperox P50) (PRXR2) (ATP9a) (PER50) [Arabidopsis Thaliana] (GB:Q43731;GB:Q96523;GB:Q9SBA1); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G37530.1"
MSGI1_79208	NODE_7220_length_163_cov_42.779140	38.7	24.3	0	0	0	0	6.3	5.6	protein.synthesis.misc ribososomal protein	40S ribosomal protein S17 (RPS17A)  Identical to 40S ribosomal protein S17-1 (RPS17A) [Arabidopsis Thaliana] (GB:P49205;GB:Q9SJD0); similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT5G04800.4); similar to 40S ribosomal protein S
MSGI1_84642	NODE_7223_length_154_cov_40.051949	4.7	3.4	20.1	44.4	0	0	0	-3.7	not assigned.unknown	not assigned.unknown
MSGI1_56295	NODE_7223_length_221_cov_84.963799	51.3	123.5	126.9	168.3	1.3	0	-1.3	0	stress.abiotic.heat	ATJ2 (Arabidopsis thaliana DnaJ homologue 2) Co-chaperonin similar to E. coli DnaJ Identical to Chaperone protein dnaJ 2 (AtDjA2) (ATJ2) [Arabidopsis Thaliana] (GB:P42825;GB:Q43293;GB:Q9C582); similar to ATJ3 (Arabidopsis thaliana DnaJ homologue 3) [Arab
MSGI1_72236	NODE_7229_length_177_cov_44.491524	0.4	0.1	109.2	0.6	0	-7.5	-8.1	0	not assigned.unknown	not assigned.unknown
MSGI1_50134	NODE_723_length_245_cov_6.285714	0	0	10.9	16.5	0	0	0	-5	not assigned.unknown	not assigned.unknown
MSGI1_119357	NODE_7232_length_61_cov_13.557377	7.5	49.1	11.2	30.5	2.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_113909	NODE_7238_length_98_cov_22.908163	26.2	1.2	6.1	0.6	-4.4	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_56836	NODE_7239_length_219_cov_457.260284	488.1	127.1	97.6	242.5	-1.9	1.3	2.3	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_82127	NODE_72413_length_158_cov_6.987342	11.1	8	0	0	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_105358	NODE_72417_length_127_cov_11.062992	8.5	12.2	22	34.9	0	0	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_101738	NODE_72434_length_131_cov_3.129771	3	6.3	24	14.4	0	0	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_119356	NODE_7244_length_61_cov_53.721310	40.5	14	5.6	23.1	-1.5	2	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_105357	NODE_7245_length_127_cov_25.448818	15.2	11.4	28.7	51.7	0	0	0	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_81539	NODE_72485_length_159_cov_19.528301	12.7	9.4	0	0	0	0	4.7	0	signalling.receptor kinases.leucine rich repeat VIII-2	leucine-rich repeat family protein / protein kinase family protein  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G56145.1); similar to leucine-rich repeat family protein / protein kinase fa
MSGI1_2276	NODE_7259_length_1482_cov_82.423752	59.6	27.1	33	23.4	-1.1	0	0	0	cell wall	"glycosyl hydrolase family 9 protein  Identical to Endoglucanase 2 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 2) [Arabidopsis Thaliana] (GB:Q9FXI9;GB:Q9LNS3); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT1G75680.1); s"
MSGI1_2276	NODE_7259_length_1482_cov_82.423752	59.6	27.1	33	23.4	-1.1	0	0	0	"cell wall.degradation.cellulases and beta -1,4-glucanases"	"glycosyl hydrolase family 9 protein  Identical to Endoglucanase 2 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 2) [Arabidopsis Thaliana] (GB:Q9FXI9;GB:Q9LNS3); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT1G75680.1); s"
MSGI1_119355	NODE_7262_length_61_cov_131.147537	79.6	128.2	79.4	42.8	0	0	0	1.6	cell wall.precursor synthesis.GAE	"GAE1 (UDP-D-GLUCURONATE 4-EPIMERASE 1); UDP-glucuronate 4-epimerase/ catalytic UDP-D-glucuronate 4-epimerase similar to GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2), catalytic [Arabidopsis thaliana] (TAIR:AT1G02000.1); similar to UDP-glucuronic acid 4-epimeras"
MSGI1_19522	NODE_7271_length_514_cov_8.953307	0	0.1	19.2	9.8	0	0	-5.3	0	signalling.receptor kinases.leucine rich repeat I	"leucine-rich repeat protein kinase, putative  similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G59650.1); similar to MEE39 (maternal effect embryo arrest 39), kinase [Arabidopsis thaliana] (TAIR:AT3G46330.1); simila"
MSGI1_29576	NODE_7273_length_373_cov_26.892761	15.3	20.3	0	0	0	0	4.9	5.3	not assigned.unknown	not assigned.unknown
MSGI1_119353	NODE_72743_length_61_cov_47.885246	31.7	17.8	0	0	0	0	6	5.2	not assigned.unknown	not assigned.unknown
MSGI1_49612	NODE_72768_length_247_cov_10.425101	1.8	12.5	8.3	0.5	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_37912	NODE_7279_length_307_cov_52.039089	26.6	46.9	23.3	70.2	0	1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_88613	NODE_72823_length_148_cov_5.256757	5.9	10.9	0.2	0	0	0	0	4.4	not assigned.unknown	not assigned.unknown
MSGI1_82125	NODE_72842_length_158_cov_14.841772	8.8	11.4	70.4	15.1	0	-2.2	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_58644	NODE_72847_length_213_cov_7.953052	3.8	4.9	39.7	6.4	0	-2.6	-3.4	0	transport.ABC transporters and multidrug resistance systems	ABC transporter family protein  Identical to White-brown complex homolog protein 23 (WBC23) [Arabidopsis Thaliana] (GB:Q93YS4;GB:Q94EX0;GB:Q9FG17); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G52310.1); similar to Putative AB
MSGI1_98306	NODE_7286_length_135_cov_27.777779	0	0	12.4	56.8	0	2.2	-4.6	-6.8	not assigned.unknown	not assigned.unknown
MSGI1_86570	NODE_72875_length_151_cov_14.867550	13.3	0.3	1.1	0.2	-5.5	0	3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_40457	NODE_7289_length_292_cov_43.092464	50.7	23	2.2	7.4	0	0	4.5	0	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit JP650 precursor (Aromatic-rich glycoprotein JP650) (JP650) [Arabidopsis Thaliana] (GB:P92990;GB:O64599;GB:Q8H7B8;GB:Q93ZQ4); simil"
MSGI1_114642	NODE_72890_length_91_cov_23.637363	6.7	13.3	40.4	36.4	0	0	-2.6	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_68653	NODE_7290_length_185_cov_38.708107	44.5	20	18.7	27.1	0	0	1.3	0	protein.folding	"peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative  similar to peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase [Arabidopsis thaliana] (TAIR:AT3G155"
MSGI1_105349	NODE_72912_length_127_cov_11.992126	5.8	6.2	11.6	0.5	0	-4.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_38822	NODE_7298_length_301_cov_27.833887	18.5	45.2	61.2	43.8	1.3	0	-1.7	0	misc.glutathione S transferases	"similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45020.1); similar to Glutathione S-transferase, C-terminal-like [Medicago truncatula] (GB:ABC75353.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro d"
MSGI1_80384	NODE_73027_length_161_cov_9.888199	9.7	58.5	41.6	21.5	2.6	0	-2.1	1.4	not assigned.unknown	not assigned.unknown
MSGI1_28117	NODE_7306_length_389_cov_42.107967	46.7	34.4	16	16.3	0	0	1.5	0	cell. vesicle transport	"coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative  similar to coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative [Arabidopsis thaliana] (TAIR:AT4G31490.1); similar to Adaptin N terminal re"
MSGI1_119331	NODE_73107_length_61_cov_29.737705	29.5	14.2	33.5	4.5	0	-2.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_92867	NODE_73111_length_142_cov_32.626762	21.5	32	75.6	9.1	0	-3.1	-1.8	1.8	not assigned.unknown	not assigned.unknown
MSGI1_91412	NODE_73136_length_144_cov_4.055555	4.1	9.6	22	4.4	0	-2.3	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_72714	NODE_73209_length_176_cov_4.761364	3.8	4.5	13.1	22.9	0	0	0	-2.3	not assigned.unknown	not assigned.unknown
MSGI1_82121	NODE_73237_length_158_cov_18.949368	7.6	12.1	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_25665	NODE_7324_length_418_cov_95.729668	87.3	49.6	42.5	8.7	0	-2.3	1	2.5	not assigned.unknown	not assigned.unknown
MSGI1_75017	NODE_73284_length_171_cov_9.421053	10.5	5.3	0.4	1.7	0	0	4.7	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"glycosyl hydrolase family 3 protein  similar to BXL1 (BETA-XYLOSIDASE 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G49360.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G10560.1); sim"
MSGI1_50596	NODE_7333_length_243_cov_21.596708	10.9	19.9	5.3	3.3	0	0	0	2.6	not assigned.unknown	not assigned.unknown
MSGI1_55191	NODE_73340_length_225_cov_25.044445	27.8	2.4	4.2	1.8	-3.5	0	2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_109312	NODE_73360_length_123_cov_8.869919	4.3	2.6	62	2.7	0	-4.5	-3.8	0	minor CHO metabolism.raffinose family.raffinose synthases.known	"SIP1 (SEED IMBIBITION 1-LIKE); galactinol-sucrose galactosyltransferase/ hydrolase, hydrolyzing O-glycosyl compounds Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount o"
MSGI1_25835	NODE_73367_length_416_cov_16.016827	12.1	2.9	22.3	3.9	0	-2.5	0	0	secondary metabolism.isoprenoids	"beta-amyrin synthase, putative  similar to LUP1 (LUPEOL SYNTHASE 1), lupeol synthase [Arabidopsis thaliana] (TAIR:AT1G78970.1); similar to beta-amyrin synthase, putative [Arabidopsis thaliana] (TAIR:AT1G78950.1); similar to ATLUP2 (Arabidopsis thaliana l"
MSGI1_119311	NODE_73368_length_61_cov_9.901639	6.2	35.8	0.4	0.4	2.5	0	0	6.5	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN1 (DARK INDUCIBLE 6) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumul"
MSGI1_117804	NODE_7339_length_64_cov_50.906250	19.5	21.4	10.5	31	0	1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_119308	NODE_734_length_61_cov_121.229507	74.6	243.6	77	96.4	1.7	0	0	1.3	not assigned.unknown	not assigned.unknown
MSGI1_71756	NODE_7345_length_178_cov_128.112366	11.2	71.1	21.2	33.8	2.7	0	0	1.1	not assigned.unknown	not assigned.unknown
MSGI1_102607	NODE_73457_length_130_cov_17.846153	17.9	31.1	53.4	31	0	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_69075	NODE_73491_length_184_cov_9.581522	2.4	8.3	21.4	7.8	0	0	-3.2	0	misc.cytochrome P450	"CYP716A2 (cytochrome P450, family 716, subfamily A, polypeptide 2); heme binding / iron ion binding / monooxygenase member of CYP716A similar to CYP716A1 (cytochrome P450, family 716, subfamily A, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TA"
MSGI1_100879	NODE_73498_length_132_cov_9.712121	1.1	9.2	1.8	16.1	0	3.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_119295	NODE_73518_length_61_cov_25.049181	4.5	15.3	0	0	0	0	0	4.9	RNA.regulation of transcription.GRAS transcription factor family	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_119295	NODE_73518_length_61_cov_25.049181	4.5	15.3	0	0	0	0	0	4.9	development.unspecified	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_119291	NODE_73541_length_61_cov_20.491804	2.8	12.2	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_93632	NODE_73555_length_141_cov_11.574468	9.7	10.2	5.5	21.6	0	2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_75014	NODE_73566_length_171_cov_19.403509	89.6	11.1	7.8	5.8	-3	0	3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_97485	NODE_73571_length_136_cov_6.654412	6.7	24.7	0	0	1.9	0	0	5.6	misc.misc2	"formamidase, putative / formamide amidohydrolase, putative  similar to formamidase, putative / formamide amidohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G37560.1); similar to Os01g0764900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044346"
MSGI1_100877	NODE_73595_length_132_cov_4.992424	12.1	25.4	46.3	18.2	0	-1.3	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_85273	NODE_7361_length_153_cov_9.921569	1.1	12.5	6.6	0.5	3.5	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_38036	NODE_73654_length_306_cov_5.068627	2.2	3.6	2.2	23.7	0	3.4	0	-2.7	major CHO metabolism.synthesis.starch.transporter	"GPT2 (glucose-6-phosphate/phosphate translocator 2); antiporter/ glucose-6-phosphate transporter glucose6-Phosphate/phosphate transporter 2 Identical to Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor (GPT2) [Arabidopsis Thaliana] (GB"
MSGI1_38036	NODE_73654_length_306_cov_5.068627	2.2	3.6	2.2	23.7	0	3.4	0	-2.7	transport.metabolite transporters at the envelope membrane	"GPT2 (glucose-6-phosphate/phosphate translocator 2); antiporter/ glucose-6-phosphate transporter glucose6-Phosphate/phosphate transporter 2 Identical to Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor (GPT2) [Arabidopsis Thaliana] (GB"
MSGI1_65057	NODE_73674_length_194_cov_25.216496	25.4	7.9	6.5	11	0	0	2	0	lipid metabolism.FA desaturation.omega 3 desaturase	"FAD7 (FATTY ACID DESATURASE 7); omega-3 fatty acid desaturase Chloroplastic enzyme responsible for the synthesis of 16:3 and 18:3 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene expression is"
MSGI1_105340	NODE_73700_length_127_cov_11.377953	1.3	11.2	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_69518	NODE_73701_length_183_cov_8.153006	5.4	53.3	17.3	62.1	3.3	1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_77556	NODE_73704_length_166_cov_4.951807	2.3	2.8	19.1	2.9	0	-2.7	-3.1	0	stress.abiotic.drought/salt	"HYP1 (HYPOTHETICAL PROTEIN 1) unknown protein, has cDNAs and ESTs associated to it similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69450.1); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os12g"
MSGI1_79819	NODE_73705_length_162_cov_6.358025	0.7	1	12.2	1.4	0	0	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_27227	NODE_7372_length_399_cov_125.278198	0.7	6.1	382.2	3	0	-7	-9.1	0	not assigned.unknown	not assigned.unknown
MSGI1_35285	NODE_73760_length_325_cov_21.209230	14.6	21.7	40.5	18.7	0	0	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_93627	NODE_73762_length_141_cov_21.368793	21.4	37.7	54.8	29.5	0	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_119275	NODE_73764_length_61_cov_20.098360	11.9	31.5	39.1	35.4	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_87901	NODE_73778_length_149_cov_5.033557	0.8	2.3	26.2	1.9	0	-3.8	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_113121	NODE_73779_length_104_cov_26.634615	14.9	20.8	37.2	13.1	0	-1.5	0	0	RNA.regulation of transcription.Psudo ARR transcription factor family	APRR2 (PSEUDO-RESPONSE REGULATOR 2); transcription factor Encodes pseudo-response regulator 2 (APRR2). Identical to Two-component response regulator-like APRR2 (Pseudo-response regulator 2) (TOC2 protein) (APRR2) [Arabidopsis Thaliana] (GB:Q6LA43;GB:O497
MSGI1_79818	NODE_73864_length_162_cov_67.709877	70.3	42.9	118.6	15.8	0	-2.9	0	1.4	not assigned.unknown	not assigned.unknown
MSGI1_119259	NODE_73977_length_61_cov_21.901640	11.6	13.5	0.8	5.8	0	0	3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_74100	NODE_73998_length_173_cov_6.202312	3.7	4.6	26.8	3.4	0	-3	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_20003	NODE_74012_length_504_cov_11.813492	10.8	17.8	41.4	16.8	0	0	-1.9	0	hormone metabolism.ethylene.synthesis-degradation	"2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT2G30830.1); similar to unknown [Pr"
MSGI1_20003	NODE_74012_length_504_cov_11.813492	10.8	17.8	41.4	16.8	0	0	-1.9	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_99130	NODE_74040_length_134_cov_11.888060	3	13.8	0	0.3	0	0	0	5.5	not assigned.unknown	not assigned.unknown
MSGI1_54702	NODE_74043_length_227_cov_8.674008	4.2	16.5	36.3	12	0	-1.6	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_119249	NODE_74055_length_61_cov_11.278688	5.6	5.6	26.3	13.6	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_116070	NODE_74058_length_78_cov_16.961538	10	35.1	17.2	13.4	1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_101726	NODE_74070_length_131_cov_10.030535	9.8	12	0.5	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_119245	NODE_74106_length_61_cov_4.639344	1.3	1.8	10	15.6	0	0	0	-3.1	not assigned.unknown	not assigned.unknown
MSGI1_87236	NODE_74138_length_150_cov_9.740000	9.6	2.2	20.7	1.4	0	-3.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_74513	NODE_7415_length_172_cov_102.127907	65.1	62.9	18.2	29.3	0	0	1.8	1.1	glycolysis.PK	"pyruvate kinase, putative  similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT5G63680.1); similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT4G26390.1); similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:A"
MSGI1_64347	NODE_74195_length_196_cov_9.770409	12	4.1	14.2	0.8	0	-4.1	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_64347	NODE_74195_length_196_cov_9.770409	12	4.1	14.2	0.8	0	-4.1	0	0	transport.Major Intrinsic Proteins.TIP	"GAMMA-TIP (Tonoplast intrinsic protein (TIP) gamma); water channel encodes a tonoplast intrinsic protein, which functions as water channel. highly expressed in root, stem, cauline leaves and flowers. Identical to Aquaporin TIP1.1 (Tonoplast intrinsic pro"
MSGI1_64347	NODE_74195_length_196_cov_9.770409	12	4.1	14.2	0.8	0	-4.1	0	0	cell wall	"GAMMA-TIP (Tonoplast intrinsic protein (TIP) gamma); water channel encodes a tonoplast intrinsic protein, which functions as water channel. highly expressed in root, stem, cauline leaves and flowers. Identical to Aquaporin TIP1.1 (Tonoplast intrinsic pro"
MSGI1_29498	NODE_74200_length_374_cov_9.783422	1.7	14.3	5.3	2.9	3.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_82116	NODE_74306_length_158_cov_3.784810	2.3	3.7	6	18.6	0	0	0	-2.3	fermentation.aldehyde dehydrogenase	ALDH2C4 (REDUCED EPIDERMAL FLUORESCENCE1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) Arabidopsis thaliana aldehyde dehydrogenase AtALDH1a mRNA. a sinapaldehyde dehydrogenase  catalyzes both the oxidation of coniferylaldehyde and
MSGI1_100862	NODE_74349_length_132_cov_11.446970	7.5	11	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_119227	NODE_74384_length_61_cov_9.918033	3.9	24.8	9.6	42	2.7	2.1	0	0	transporter.sugars.sucrose	SUC1 (SUCROSE-PROTON SYMPORTER 1); carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter Sucrose transporter gene induced in response to nematodes; member of Sucrose-proton symporter family. Identical to Sucrose transport protein SUC1 (Sucro
MSGI1_43053	NODE_74397_length_278_cov_15.651079	20.5	3.6	2	0.6	-2.5	0	3.4	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	"protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to ELP (EXTENSIN-LIKE PROTEIN), lipid binding [Arabidopsis thaliana] (TAIR:AT1G12090.1); similar to proline-rich SAC51 [Brassica napus] (GB:AAC60566.1); contains InterPr"
MSGI1_16274	NODE_7442_length_572_cov_7.874126	0	0	22.1	5.7	0	0	-5.5	0	cell wall	disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT2G15080.2); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G11080.1); similar to disease resistance family protei
MSGI1_16274	NODE_7442_length_572_cov_7.874126	0	0	22.1	5.7	0	0	-5.5	0	stress.biotic	disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT2G15080.2); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G11080.1); similar to disease resistance family protei
MSGI1_119221	NODE_74463_length_61_cov_17.852459	11.2	9.2	24.7	56.4	0	1.2	0	-2.6	TCA / org. transformation.other organic acid transformaitons.aconitase	"aconitase family protein / aconitate hydratase family protein  similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT4G26970.1); similar to 3-isopropylmalate dehydratase large subun"
MSGI1_119221	NODE_74463_length_61_cov_17.852459	11.2	9.2	24.7	56.4	0	1.2	0	-2.6	TCA / org. transformation.TCA.aconitase	"aconitase family protein / aconitate hydratase family protein  similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT4G26970.1); similar to 3-isopropylmalate dehydratase large subun"
MSGI1_82739	NODE_74465_length_157_cov_4.159235	1.9	4.2	18.1	3.9	0	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_119219	NODE_74486_length_61_cov_17.032787	10.1	0.2	6	2.9	-5.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_27466	NODE_74529_length_396_cov_9.247475	8.4	16.9	38.2	9.2	0	-2.1	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_99120	NODE_74556_length_134_cov_6.947761	2.4	8.2	15.4	1	0	-3.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_110312	NODE_74585_length_122_cov_22.385246	19	21.4	3.4	1.4	0	0	2.5	3.9	not assigned.unknown	not assigned.unknown
MSGI1_61136	NODE_74589_length_205_cov_4.424390	4.3	3.5	108.2	0.9	0	-6.9	-4.7	0	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase	"NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE3) Encodes  9-<i>cis</i>-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chl"
MSGI1_60465	NODE_74606_length_207_cov_6.275362	3	28.2	22.8	72.5	3.2	1.7	-2.9	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_89271	NODE_74630_length_147_cov_8.823130	5.5	7.8	30.4	9.6	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_117030	NODE_74630_length_70_cov_16.842857	12	10.1	0	0	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_82738	NODE_74637_length_157_cov_4.356688	2.2	2.8	19	2.8	0	-2.8	-3.1	0	transport.amino acids	amino acid transporter family protein  similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT2G39130.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABE77592.1); contains InterPro domain Amino acid/p
MSGI1_11670	NODE_7472_length_701_cov_13.776034	10.7	12.7	0.2	0.1	0	0	5.7	7	RNA.regulation of transcription.putative transcription regulator	transducin family protein / WD-40 repeat family protein  similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G45620.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94369.1); c
MSGI1_119198	NODE_74751_length_61_cov_11.114754	5	9.5	22.7	14.4	0	0	-2.2	0	protein.degradation.AAA type	"AAA-type ATPase family protein / vacuolar sorting protein-related  similar to ERH3 (ECTOPIC ROOT HAIR 3), ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G80350.1); similar to salt-induced AAA-Type ATPase [Mese"
MSGI1_119198	NODE_74751_length_61_cov_11.114754	5	9.5	22.7	14.4	0	0	-2.2	0	protein.targeting.unknown	"AAA-type ATPase family protein / vacuolar sorting protein-related  similar to ERH3 (ECTOPIC ROOT HAIR 3), ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G80350.1); similar to salt-induced AAA-Type ATPase [Mese"
MSGI1_55186	NODE_74763_length_225_cov_6.266667	2	3.5	15.1	1.6	0	-3.2	0	0	transport.misc	xanthine/uracil permease family protein  similar to xanthine/uracil/vitamin C permease family protein [Arabidopsis thaliana] (TAIR:AT5G50300.1); similar to Os05g0332600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055224.1); similar to hypothetical
MSGI1_104398	NODE_74794_length_128_cov_6.281250	3.1	2.8	19.8	4.5	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_82733	NODE_74814_length_157_cov_7.853503	3.5	3.2	28.8	1.4	0	-4.4	-3	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	CBF4/DREB1D (C- REPEAT-BINDING FACTOR 4); DNA binding / transcription factor/ transcriptional activator encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF4). The protein contains one AP2 domain. There are six members i
MSGI1_113908	NODE_74838_length_98_cov_11.418367	8.6	6.8	53.4	8.5	0	-2.7	-2.6	0	signalling.phosphinositides.phosphoinositide phospholipase C	"ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phosp"
MSGI1_113908	NODE_74838_length_98_cov_11.418367	8.6	6.8	53.4	8.5	0	-2.7	-2.6	0	lipid metabolism.lipid degradation.lysophospholipases.phosphoinositide phospholipase C	"ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phosp"
MSGI1_119189	NODE_74842_length_61_cov_22.311476	17.3	12.6	46.3	33.4	0	0	-1.4	0	protein.degradation.ubiquitin.proteasom	PBB2 (20S proteasome beta subunit B 2); peptidase Encodes 20S proteasome beta subunit PBB2 (PBB2). Identical to Proteasome subunit beta type 7-B precursor (EC 3.4.25.1) (Proteasome subunit beta type 2) (20S proteasome beta subunit B-2) (Proteasome compon
MSGI1_105320	NODE_74874_length_127_cov_25.826771	26.2	1.7	72.8	4.8	-3.9	-3.9	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_69066	NODE_74891_length_184_cov_5.842391	3.2	1.9	20.4	1	0	-4.4	-2.7	0	minor CHO metabolism.raffinose family.raffinose synthases.known	"SIP1 (SEED IMBIBITION 1-LIKE); galactinol-sucrose galactosyltransferase/ hydrolase, hydrolyzing O-glycosyl compounds Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount o"
MSGI1_24206	NODE_749_length_437_cov_5.178490	3.3	4.1	41.2	7.8	0	-2.4	-3.6	0	transport.amino acids	"AAP2 (AMINO ACID PERMEASE 2); amino acid permease member of AAAP family similar to AAP4 (amino acid permease 4), amino acid permease [Arabidopsis thaliana] (TAIR:AT5G63850.1); similar to AAP3 (amino acid permease 3), amino acid permease [Arabidopsis thal"
MSGI1_49375	NODE_74915_length_248_cov_6.786290	3	4.3	21.5	2.4	0	-3.2	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_80369	NODE_74916_length_161_cov_5.981367	2.4	2.4	18.4	22.8	0	0	-2.9	-3.2	not assigned.unknown	not assigned.unknown
MSGI1_77026	NODE_74950_length_167_cov_7.023952	13.8	7.3	0	0	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_113796	NODE_7496_length_99_cov_16.919191	3.8	9.2	21.6	1.9	0	-3.5	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_17737	NODE_7497_length_543_cov_14.340700	7.4	13.6	51.1	6.6	0	-3	-2.8	0	misc.acid and other phosphatases	"acid phosphatase class B family protein  Identical to Hypothetical protein At2g39920 [Arabidopsis Thaliana] (GB:O04195); similar to acid phosphatase, putative [Arabidopsis thaliana] (TAIR:AT4G25150.1); similar to HAD superfamily (subfamily IIIB) phosphat"
MSGI1_58635	NODE_74971_length_213_cov_6.380282	8.2	11.1	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_107281	NODE_74984_length_125_cov_14.208000	2.3	10.4	3.4	31.3	0	3.2	0	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_43427	NODE_74992_length_276_cov_16.942028	0.9	21.2	0.6	9.5	4.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_106315	NODE_7500_length_126_cov_233.000000	74	47.3	21	48.8	0	1.2	1.8	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S29 (RPS29C)  Identical to 40S ribosomal protein S29 (RPS29C) [Arabidopsis Thaliana] (GB:Q680P8;GB:Q9LDT9); similar to 40S ribosomal protein S29 (RPS29B) [Arabidopsis thaliana] (TAIR:AT3G44010.1); similar to 40S ribosomal protein S29
MSGI1_36958	NODE_7500_length_313_cov_20.105431	28	0.1	4	0.1	-8.1	0	2.8	0	hormone metabolism.gibberelin.induced-regulated-responsive-activated	GASA1 (GAST1 PROTEIN HOMOLOG 1) GA-responsive GAST1 protein homolog regulated by BR and GA antagonistically.  Possibly involved in cell elongation based on expression data Identical to Gibberellin-regulated protein 1 precursor (GASA1) [Arabidopsis Thalian
MSGI1_36958	NODE_7500_length_313_cov_20.105431	28	0.1	4	0.1	-8.1	0	2.8	0	cell wall	GASA1 (GAST1 PROTEIN HOMOLOG 1) GA-responsive GAST1 protein homolog regulated by BR and GA antagonistically.  Possibly involved in cell elongation based on expression data Identical to Gibberellin-regulated protein 1 precursor (GASA1) [Arabidopsis Thalian
MSGI1_13912	NODE_7503_length_632_cov_36.031647	16.9	39.6	0.8	0.6	0	0	4.4	6	not assigned.unknown	not assigned.unknown
MSGI1_106314	NODE_75045_length_126_cov_4.603175	22.2	5.9	49.3	8.3	0	-2.6	0	0	transport.cyclic nucleotide or calcium regulated channels	"DND1 (DEFENSE NO DEATH 1); calmodulin binding / cation channel/ cyclic nucleotide binding / inward rectifier potassium channel 'defense, no death' gene (DND1) encodes a mutated cyclic nucleotide-gated cation channel; Same as CNGC2 (article ID 229): Cycli"
MSGI1_105318	NODE_75060_length_127_cov_17.598425	4.5	9.9	25.3	1.9	0	-3.7	-2.5	0	stress.biotic	glycosyl hydrolase family 81 protein  similar to glycosyl hydrolase family 81 protein [Arabidopsis thaliana] (TAIR:AT1G18310.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96863.1); similar to beta-glucan-binding protein 4 [Medicago truncatu
MSGI1_85253	NODE_75072_length_153_cov_12.013072	6.8	11.4	0	0	0	0	0	4.5	lipid metabolism.lipid degradation.beta-oxidation.acyl CoA DH	"acyl-CoA dehydrogenase-related  similar to IVD (ISOVALERYL-COA-DEHYDROGENASE) [Arabidopsis thaliana] (TAIR:AT3G45300.1); similar to Acad10 protein [Mus musculus] (GB:AAH27825.1); similar to PREDICTED: similar to acyl-Coenzyme A dehydrogenase family, memb"
MSGI1_65053	NODE_75075_length_194_cov_7.572165	26.3	5.4	4.8	2.4	-2.3	0	2.5	0	cell wall.modification	"ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1) member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-B1 precursor (AtEXPB1) (At-EXPB1) (Beta-expansin-1) (Ath- ExpBeta-1.5) (EXPB1)"
MSGI1_114541	NODE_75089_length_92_cov_22.260870	7.2	38.2	2.2	0.7	2.4	0	0	5.8	not assigned.unknown	not assigned.unknown
MSGI1_70886	NODE_7509_length_180_cov_48.044445	10.3	18.8	91.9	10.2	0	-3.2	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_8897	NODE_7509_length_811_cov_77.874229	33.1	30.4	108.8	41.2	0	-1.4	-1.7	0	stress.abiotic.unspecified	GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP5) Identical to Germin-like protein subfamily 2 member 1 precursor (GLP4) [Arabidopsis Thaliana] (GB:P94014;GB:O80538;GB:P94097); similar
MSGI1_8897	NODE_7509_length_811_cov_77.874229	33.1	30.4	108.8	41.2	0	-1.4	-1.7	0	cell wall	GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP5) Identical to Germin-like protein subfamily 2 member 1 precursor (GLP4) [Arabidopsis Thaliana] (GB:P94014;GB:O80538;GB:P94097); similar
MSGI1_21756	NODE_7511_length_473_cov_60.266384	12.9	36.2	16.2	14.9	1.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_44616	NODE_75118_length_270_cov_10.037037	11.2	0.1	1.9	0.5	-6.8	0	0	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	"pEARLI 1; lipid binding a putative lipid transfer protein, vernalization-responsive and cold-induced similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT4G12500.1); similar to arachidonic"
MSGI1_36381	NODE_7514_length_317_cov_10.419559	1.3	2.1	16.3	28.8	0	0	-3.6	-3.8	not assigned.unknown	not assigned.unknown
MSGI1_72225	NODE_75146_length_177_cov_19.723164	11.9	8.1	37.4	9.5	0	-2	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_31138	NODE_7519_length_358_cov_75.349159	3.4	30.4	16.7	32.5	3.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_119173	NODE_7520_length_61_cov_113.573769	2.6	21.6	14	17.3	3.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_63967	NODE_753_length_197_cov_37.243656	18.6	12.4	25.8	3.7	0	-2.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_118112	NODE_75313_length_62_cov_13.016129	1.7	21.4	79.1	2.5	3.7	-5	-5.5	3.1	not assigned.unknown	not assigned.unknown
MSGI1_30789	NODE_754_length_361_cov_17.279778	22.5	16.2	35.3	49.6	0	0	0	-1.6	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	"NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial, putative  similar to NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit (ISS) [Ostreococcus tauri] (GB:CAL57468.1); similar to NADH:ubiquinone oxidoreductase 51 kD subunit [Chlamydomonas rei"
MSGI1_104392	NODE_7542_length_128_cov_17.593750	8.9	13.8	33.9	14.3	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_77542	NODE_75425_length_166_cov_4.825301	28.7	4.4	47.1	10.8	-2.7	-2.1	0	0	stress.biotic	glycosyl hydrolase family 18 protein  similar to glycosyl hydrolase family 18 protein [Arabidopsis thaliana] (TAIR:AT4G19820.1); similar to chitinase/lysozyme [Nicotiana tabacum] (GB:CAA55128.1); contains InterPro domain Chitinase II; (InterPro:IPR011583
MSGI1_119165	NODE_75491_length_61_cov_2.901639	0.2	0.5	49.5	2.9	0	-4.1	-8	0	not assigned.unknown	not assigned.unknown
MSGI1_36957	NODE_75605_length_313_cov_7.651757	1.1	14.1	2.2	10	3.7	0	0	0	cell wall	"protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23160.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23150.1); similar to CRK10 (CYSTEINE-RICH RLK10), kinase [Arabido"
MSGI1_36957	NODE_75605_length_313_cov_7.651757	1.1	14.1	2.2	10	3.7	0	0	0	signalling.receptor kinases.DUF 26	"protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23160.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23150.1); similar to CRK10 (CYSTEINE-RICH RLK10), kinase [Arabido"
MSGI1_63966	NODE_75681_length_197_cov_11.482233	34.1	13.9	24.3	5.4	0	-2.2	0	0	metal handling.acquisition	"FRD3 (FERRIC REDUCTASE DEFECTIVE 3); antiporter Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even unde"
MSGI1_55182	NODE_75686_length_225_cov_5.275556	6.4	12	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_109277	NODE_75713_length_123_cov_2.861789	1.4	2.9	1617.1	1.4	0	-10.2	-10.2	0	not assigned.unknown	not assigned.unknown
MSGI1_80935	NODE_7580_length_160_cov_14.687500	4	6.3	28.4	6.4	0	-2.1	-2.8	0	lipid metabolism.lipid degradation.lysophospholipases	1-phosphatidylinositol phosphodiesterase-related  similar to 1-phosphatidylinositol phosphodiesterase-related [Arabidopsis thaliana] (TAIR:AT4G34920.1); similar to Ki1 protein [Beta vulgaris] (GB:AAO92349.1); contains InterPro domain Phosphatidylinositol
MSGI1_119161	NODE_75833_length_61_cov_17.344263	11	0	1.6	0	-4.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_86557	NODE_7588_length_151_cov_119.874168	158.4	60.1	142.2	85.9	-1.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_76015	NODE_75896_length_169_cov_7.224852	1.2	7.4	10.4	0.2	0	-5.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_71266	NODE_75899_length_179_cov_13.597765	2.8	14.4	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_66570	NODE_7592_length_190_cov_6.915790	4.8	3.9	16.2	20.7	0	0	0	-2.4	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_66570	NODE_7592_length_190_cov_6.915790	4.8	3.9	16.2	20.7	0	0	0	-2.4	transport.Major Intrinsic Proteins.SIP	SIP1;1 (SMALL AND BASIC INTRINSIC PROTEIN 1A) Belongs to a family of plant aquaporins. Similar to yeast and radish aquaporins. Located on ER. Identical to Probable aquaporin SIP1.1 (Small basic intrinsic protein 1.1) (SIP1.1) [Arabidopsis Thaliana] (GB:Q
MSGI1_52566	NODE_760_length_235_cov_20.578724	21.3	9.9	1.1	3.2	0	0	4.3	0	lipid metabolism.FA synthesis and FA elongation.pyruvate DH	LTA2 (PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE); dihydrolipoyllysine-residue acetyltransferase Nuclear encoded dihydrolipoamide S-acetyltransferase (LTA2) that encodes teh  Pyruvate Decarboxylase E2 subunit. Mutant has embryo defect. similar to EMB30
MSGI1_7649	NODE_7609_length_875_cov_43.672001	2.5	30.2	163.7	19.5	3.6	-3.1	-6	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP2 (ARABIDOPSIS THALIANA SEED IMBIBITION 2); hydrolase, hydrolyzing O-glycosyl compounds  similar to ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G55740.1); similar to DI"
MSGI1_74998	NODE_76112_length_171_cov_11.883041	11.5	4.7	0	0	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_85880	NODE_76145_length_152_cov_10.092105	0.7	11.3	2.1	4.7	4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_43632	NODE_762_length_275_cov_155.240005	91.8	46	31.7	58	0	0	1.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L7A (RPL7aB)  Identical to 60S ribosomal protein L7a-2 (RPL7AB) [Arabidopsis Thaliana] (GB:Q9LZH9); similar to 60S ribosomal protein L7A (RPL7aA) [Arabidopsis thaliana] (TAIR:AT2G47610.1); similar to 60S ribosomal protein L7A-like pr
MSGI1_45058	NODE_7633_length_268_cov_11.059702	0.4	0.1	26.2	1.2	0	-4.4	-6	0	not assigned.unknown	not assigned.unknown
MSGI1_91381	NODE_76342_length_144_cov_4.743055	5.8	6.2	25.6	4.4	0	-2.5	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_93610	NODE_76360_length_141_cov_6.659575	6.5	13.3	1.7	1	0	0	0	3.7	not assigned.unknown	not assigned.unknown
MSGI1_100832	NODE_76408_length_132_cov_4.113636	2.4	16.9	44.5	7.8	2.8	-2.5	-4.2	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP2 (ARABIDOPSIS THALIANA SEED IMBIBITION 2); hydrolase, hydrolyzing O-glycosyl compounds  similar to ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G55740.1); similar to DI"
MSGI1_56280	NODE_76418_length_221_cov_8.728507	4.3	9.7	28.9	0.7	0	-5.4	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_62159	NODE_7642_length_202_cov_118.594063	56.6	73.3	16.2	38.1	0	0	1.8	0	development.unspecified	"senescence-associated protein, putative  similar to germination protein-related [Arabidopsis thaliana] (TAIR:AT3G29970.1); similar to HvB12D [Hordeum vulgare subsp. vulgare] (GB:CAA54065.1); contains InterPro domain B12D; (InterPro:IPR010530)"
MSGI1_119154	NODE_76476_length_61_cov_26.934425	11.9	6.1	0.4	0.4	0	0	4.9	0	redox.ascorbate and glutathione.ascorbate	"DHAR3 (DEHYDROASCORBATE REDUCTASE 1); glutathione dehydrogenase (ascorbate) The protein undergoes thiolation following treatment with the  oxidant tert-butylhydroperoxide. similar to DHAR2, glutathione dehydrogenase (ascorbate) [Arabidopsis thaliana] (TA"
MSGI1_111423	NODE_76477_length_118_cov_6.669491	6	10.8	0	0	0	0	0	4.4	not assigned.unknown	not assigned.unknown
MSGI1_53885	NODE_76498_length_230_cov_14.100000	16.6	1.8	9.2	2.6	-3.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_117542	NODE_76532_length_66_cov_6.212121	8.2	14.2	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_119153	NODE_76566_length_61_cov_10.262295	6.7	16.4	0	0.8	0	0	0	4.4	protein.postranslational modification	"calcium-dependent protein kinase, putative / CDPK, putative  similar to CRK (CDPK-related kinase), calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase [Arabidopsis thaliana] (TAIR:AT3G50530.1); similar to calcium-dependen"
MSGI1_119153	NODE_76566_length_61_cov_10.262295	6.7	16.4	0	0.8	0	0	0	4.4	signalling.calcium	"calcium-dependent protein kinase, putative / CDPK, putative  similar to CRK (CDPK-related kinase), calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase [Arabidopsis thaliana] (TAIR:AT3G50530.1); similar to calcium-dependen"
MSGI1_46191	NODE_7662_length_263_cov_37.676807	23	23.3	67.6	49.7	0	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_83963	NODE_7673_length_155_cov_20.787096	0	0	45.2	31.8	0	0	-6.5	-6	not assigned.unknown	not assigned.unknown
MSGI1_105302	NODE_76741_length_127_cov_12.338583	5.7	16.5	25.1	10.9	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_70415	NODE_76772_length_181_cov_10.872929	6.8	12.7	0	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_88576	NODE_76807_length_148_cov_6.452703	8.2	9.2	25.3	5.5	0	-2.2	0	0	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	lipase class 3 family protein  similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT1G06250.1); similar to Ipomoea nil Pn47p (GB:AAB07724.1); similar to Os05g0574000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056386.1); similar
MSGI1_87881	NODE_76829_length_149_cov_6.348993	7.4	26.5	25.9	21	1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_79799	NODE_76849_length_162_cov_11.925926	12	37.5	27.3	30.2	1.6	0	0	0	signalling.receptor kinases.S-locus glycoprotein like	"S-locus protein kinase, putative  similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G11340.1); similar to ARK3 (Arabidopsis Receptor Kinase 3), kinase [Arabidopsis thaliana] (TAIR:AT4G21380.1); similar to ARK2 (Arabi"
MSGI1_75529	NODE_7685_length_170_cov_10.935294	0.3	0	11	21.7	0	0	-5.2	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_97450	NODE_76930_length_136_cov_9.500000	3.2	14.8	16	0.8	0	-4.3	0	4.2	RNA.regulation of transcription.PHOR1	U-box domain-containing protein  similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G66160.1); similar to syringolide-induced protein 13-1-1 [Glycine max] (GB:BAB86896.1); contains InterPro domain Armadillo-like helical; (InterPro:
MSGI1_98264	NODE_76941_length_135_cov_5.014815	4.2	3.4	22.3	0.5	0	-5.5	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_116890	NODE_76976_length_71_cov_26.380281	13.6	19.8	0	0	0	0	4.8	5.3	not assigned.unknown	not assigned.unknown
MSGI1_99092	NODE_76977_length_134_cov_5.067164	10.5	0.2	0.5	0	-5.7	0	0	0	stress.abiotic.unspecified	allergen V5/Tpx-1-related family protein  similar to allergen V5/Tpx-1-related family protein [Arabidopsis thaliana] (TAIR:AT4G25790.1); similar to STS14 protein precursor (GB:Q41495); contains InterPro domain Allergen V5/Tpx-1 related; (InterPro:IPR00128
MSGI1_49203	NODE_76985_length_249_cov_4.835341	5.4	3.9	15.8	1.3	0	-3.6	0	0	misc.cytochrome P450	"CYP81D5 (cytochrome P450, family 81, subfamily D, polypeptide 5); oxygen binding member of CYP81D similar to CYP81D8 (cytochrome P450, family 81, subfamily D, polypeptide 8), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37370.1); similar to cytochrome"
MSGI1_113659	NODE_77001_length_100_cov_22.020000	16.9	14.2	0	0	0	0	5.1	4.8	protein.synthesis.initiation	"EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E); RNA binding / translation initiation factor eIF4E protein.  The cum1 mutation affects the local spreading of CMV within the inoculated leaf, delaying accumulation of cucumber mosaic virus coat protein."
MSGI1_113794	NODE_77017_length_99_cov_6.646465	2	6.3	17.1	3.5	0	0	-3.1	0	stress.biotic	glycosyl hydrolase family 81 protein  similar to glycosyl hydrolase family 81 protein [Arabidopsis thaliana] (TAIR:AT1G18310.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96863.1); similar to beta-glucan-binding protein 4 [Medicago truncatu
MSGI1_119123	NODE_77043_length_61_cov_20.688524	8.8	15.1	5.6	23.9	0	2.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_80360	NODE_7705_length_161_cov_44.354038	40.5	23.8	88.5	17.4	0	-2.3	-1.1	0	protein.postranslational modification	"CIPK3 (CBL-INTERACTING PROTEIN KINASE 3); kinase/ protein kinase encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing see"
MSGI1_119118	NODE_77125_length_61_cov_20.704918	11	1.8	0	0	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_84609	NODE_77160_length_154_cov_5.155844	7.9	5.5	29.4	6.3	0	-2.2	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_112479	NODE_77171_length_109_cov_13.871560	13.4	9.3	0	0.6	0	0	4.7	0	cell wall.pectin synthesis	"QUA1 (QUASIMODO1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Quasimodo1, encodes a glycosyltransferase, involved in homogalacturonan biosynthesis; mutant show"
MSGI1_63576	NODE_77196_length_198_cov_6.560606	8.4	20.1	2.1	1.2	0	0	0	4.1	not assigned.unknown	not assigned.unknown
MSGI1_57404	NODE_77221_length_217_cov_20.483871	2	20.5	7.5	2.2	3.4	0	0	3.2	not assigned.unknown	not assigned.unknown
MSGI1_99089	NODE_77234_length_134_cov_6.104477	2.9	4.4	38.6	2.8	0	-3.8	-3.7	0	RNA.regulation of transcription.MYB-related transcription factor family	myb family transcription factor  similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G37260.1); similar to putative At5g37260 [Lycopersicon peruvianum] (GB:AAX44338.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012
MSGI1_40621	NODE_77238_length_291_cov_9.151203	11.6	5.7	0.1	0.4	0	0	6.9	0	not assigned.unknown	not assigned.unknown
MSGI1_65049	NODE_7725_length_194_cov_12.407216	0.9	0.7	6.8	15.9	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_95113	NODE_77265_length_139_cov_4.697842	5.5	5.3	25.5	3.8	0	-2.7	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_99923	NODE_77275_length_133_cov_11.849624	9.7	12.5	0.8	0	0	0	0	4.6	fermentation.aldehyde dehydrogenase	ALDH7B4 (ALDEHYDE DEHYDROGENASE 7B4); 3-chloroallyl aldehyde dehydrogenase Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 7B4 (EC 1.2.1.3) (Antiquitin-1) (Turgor- responsive ALDH) (ALDH7B4) [Arabidopsis Thaliana] (GB:Q9SYG7;GB:Q546B7); simila
MSGI1_87221	NODE_77289_length_150_cov_9.220000	12.6	14.5	84.1	35	0	-1.3	-2.7	0	amino acid metabolism.synthesis.central amino acid metabolism.alanine.alanine-glyoxylate aminotransferase	"AGT3 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 3); alanine-glyoxylate transaminase alanine:glyoxylate aminotransferase 2 homolog (AGT3) mRNA, Identical to Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial precursor (EC 2.6.1.44) (Beta-alanine-py"
MSGI1_63575	NODE_77289_length_198_cov_6.909091	6.1	7.4	53.9	3.5	0	-3.9	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_99921	NODE_77305_length_133_cov_3.766917	0.9	2.1	13	9.6	0	0	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_89246	NODE_77379_length_147_cov_5.068027	2.4	3.8	32.7	4.6	0	-2.8	-3.8	0	transport.ABC transporters and multidrug resistance systems	ABC transporter family protein  Identical to White-brown complex homolog protein 23 (WBC23) [Arabidopsis Thaliana] (GB:Q93YS4;GB:Q94EX0;GB:Q9FG17); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G52310.1); similar to Putative AB
MSGI1_119102	NODE_77381_length_61_cov_3.590164	16	0.4	4	2.5	-5.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_84605	NODE_77394_length_154_cov_5.980519	6.1	15.1	3.8	26.6	0	2.8	0	0	hormone metabolism.cytokinin.signal transduction	ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10); transcription factor/ two-component response regulator Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. Identical to Two-com
MSGI1_84605	NODE_77394_length_154_cov_5.980519	6.1	15.1	3.8	26.6	0	2.8	0	0	RNA.regulation of transcription.ARR	ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10); transcription factor/ two-component response regulator Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. Identical to Two-com
MSGI1_113120	NODE_77412_length_104_cov_12.182693	4.7	9.2	24.2	11.3	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_117540	NODE_7745_length_66_cov_561.954529	745.9	254.1	432.8	369.6	-1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_118110	NODE_7746_length_62_cov_507.338715	247.7	91.8	142.5	125.8	-1.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_38034	NODE_77482_length_306_cov_21.617647	43.5	24.1	13.7	18.1	0	0	1.7	0	RNA.regulation of transcription.unclassified	"zinc finger (C2H2 type) family protein  similar to Os08g0564500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062531.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD12942.1); contains InterPro domain Zinc finger, U1-ty"
MSGI1_119092	NODE_77493_length_61_cov_49.065575	10.1	20.3	16.4	54.4	0	1.7	0	-1.4	cell wall	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_119092	NODE_77493_length_61_cov_49.065575	10.1	20.3	16.4	54.4	0	1.7	0	-1.4	protein.degradation.subtilases	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_42877	NODE_7752_length_279_cov_9.010753	6.1	5.6	31.1	6.2	0	-2.3	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_17173	NODE_7756_length_554_cov_29.539711	10.4	16.3	55.4	10.4	0	-2.4	-2.4	0	RNA.regulation of transcription.unclassified	SEN1 (DARK INDUCIBLE 1) Senescence-associated gene that is strongly induced by phosphate starvation.  Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway medi
MSGI1_17173	NODE_7756_length_554_cov_29.539711	10.4	16.3	55.4	10.4	0	-2.4	-2.4	0	development.unspecified	SEN1 (DARK INDUCIBLE 1) Senescence-associated gene that is strongly induced by phosphate starvation.  Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway medi
MSGI1_26520	NODE_77575_length_407_cov_6.429976	7.5	4	55.3	4.1	0	-3.8	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_88568	NODE_77576_length_148_cov_31.817568	33.6	17.6	35.1	48.7	0	0	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_58296	NODE_77589_length_214_cov_20.303738	9.3	25.1	45.9	14.6	0	-1.7	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_117538	NODE_7763_length_66_cov_23.378788	0	12.4	2.7	26.9	4.6	3.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_71263	NODE_77642_length_179_cov_16.396648	15.5	56.7	90	26.4	1.9	-1.8	-2.5	1.1	not assigned.unknown	not assigned.unknown
MSGI1_115614	NODE_7766_length_82_cov_104.268295	0	0	96.4	82.7	0	0	-7.6	-7.4	not assigned.unknown	not assigned.unknown
MSGI1_72693	NODE_7767_length_176_cov_7.221591	1.2	2	16.8	4.9	0	0	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_40620	NODE_7768_length_291_cov_41.144329	95.8	42.4	167.5	177.7	-1.2	0	0	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_110261	NODE_77697_length_122_cov_9.803279	12	0.1	0	0	-6.9	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_60783	NODE_77703_length_206_cov_7.218447	1.8	9.3	59.1	10.1	0	-2.5	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_20374	NODE_7771_length_496_cov_33.729839	90.3	41.6	73.8	36	-1.1	0	0	0	amino acid metabolism.degradation.aspartate family.asparagine.L-asparaginase	"L-asparaginase, putative / L-asparagine amidohydrolase, putative  Identical to Probable L-asparaginase 2 precursor (EC 3.5.1.1) (L-asparagine amidohydrolase 2) [Contains: L-asparaginase 2 subunit alpha; L- asparaginase 2 subunit beta] [Arabidopsis Thalia"
MSGI1_113257	NODE_77741_length_103_cov_7.912621	3.3	3.9	37.8	17.2	0	0	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_92065	NODE_77823_length_143_cov_9.461538	5.3	4.3	33.3	1.7	0	-4.3	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_66553	NODE_7786_length_190_cov_83.926315	69.2	55.7	1.4	0.8	0	0	5.6	6.1	not assigned.unknown	not assigned.unknown
MSGI1_119067	NODE_77866_length_61_cov_28.311476	38	1.4	13.6	1.2	-4.8	-3.5	1.5	0	cell wall.pectin*esterases.misc	pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT2G45220.1); similar to putative pectin methylesterase [Populus tremula x Populus tremuloides] (GB:CAC01624.1); similar to Os01g0312500 [Oryza sativa (j
MSGI1_92819	NODE_77943_length_142_cov_6.415493	13.3	7.2	1.4	4.4	0	0	3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_92061	NODE_77956_length_143_cov_3.608392	4.2	23.1	0	0	2.5	0	0	5.5	not assigned.unknown	not assigned.unknown
MSGI1_53641	NODE_77962_length_231_cov_9.913420	5.3	0	75	0	0	-7.2	-3.8	0	cell wall.modification	"ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1) EXPANSIN-RELATED. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-like B1 precursor (AtEXLB1) (AtEXPR1) (At-EXPR1) (Ath- ExpBeta-3.1) (EXLB1) [Arab"
MSGI1_59863	NODE_77965_length_209_cov_8.593302	12.3	0.1	2.3	0	-6.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_95103	NODE_77989_length_139_cov_20.913670	1.4	16.5	1	11.5	3.6	0	0	0	transport.phosphate	PHO1 (PHOSPHATE 1) mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains. Identical
MSGI1_41917	NODE_7801_length_284_cov_71.401405	5.8	37.4	4.1	8.4	2.7	0	0	2.2	not assigned.unknown	not assigned.unknown
MSGI1_119055	NODE_78022_length_61_cov_8.754098	1.9	5	16.8	4.1	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_67821	NODE_78054_length_187_cov_6.941176	4.8	36	33.6	29.7	2.9	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_95102	NODE_78089_length_139_cov_9.352518	6.2	11.7	0.2	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_96690	NODE_7810_length_137_cov_20.321167	4.7	17.6	24	20	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_99079	NODE_78102_length_134_cov_27.253731	19.7	25.9	0.2	0	0	0	6.6	5.7	not assigned.unknown	not assigned.unknown
MSGI1_112262	NODE_7818_length_111_cov_197.225220	11.5	71.7	44.5	5.6	2.6	-3	-2	3.7	RNA.regulation of transcription.C3H zinc finger family	CZF1/ZFAR1; transcription factor  similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G55980.1); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR0021
MSGI1_34362	NODE_7819_length_332_cov_151.222885	10	69.4	41.7	6	2.8	-2.8	-2.1	3.5	RNA.regulation of transcription.C3H zinc finger family	zinc finger (CCCH-type) family protein  similar to CZF1/ZFAR1 [Arabidopsis thaliana] (TAIR:AT2G40140.2); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro
MSGI1_99903	NODE_78245_length_133_cov_5.172932	3.5	5.9	30.5	25.6	0	0	-3.1	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_14131	NODE_78245_length_626_cov_22.292332	2.3	25.4	11.3	8.6	3.5	0	0	0	cell wall	ATNAC2 (Arabidopsis thaliana NAC domain containing protein 2); transcription factor Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2. similar to NAM (Arabidopsis NAC d
MSGI1_14131	NODE_78245_length_626_cov_22.292332	2.3	25.4	11.3	8.6	3.5	0	0	0	RNA.regulation of transcription.NAC domain transcription factor family	ATNAC2 (Arabidopsis thaliana NAC domain containing protein 2); transcription factor Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2. similar to NAM (Arabidopsis NAC d
MSGI1_78074	NODE_78289_length_165_cov_7.806061	69.4	4.4	9.7	6	-4	0	2.8	0	cell wall	gibberellin-regulated family protein  similar to ATEPR1 (Arabidopsis thaliana extensin proline-rich 1) [Arabidopsis thaliana] (TAIR:AT2G27380.1); similar to hypothetical protein [Brassica napus var. napus] (GB:AAS68179.1); contains InterPro domain Pistil-
MSGI1_78074	NODE_78289_length_165_cov_7.806061	69.4	4.4	9.7	6	-4	0	2.8	0	hormone metabolism.gibberelin.induced-regulated-responsive-activated	gibberellin-regulated family protein  similar to ATEPR1 (Arabidopsis thaliana extensin proline-rich 1) [Arabidopsis thaliana] (TAIR:AT2G27380.1); similar to hypothetical protein [Brassica napus var. napus] (GB:AAS68179.1); contains InterPro domain Pistil-
MSGI1_70401	NODE_78314_length_181_cov_7.535912	8.1	11.1	0	0	0	0	0	4.5	RNA.transcription	SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor Encodes a specialized sigma factor in chloroplasts and is responsible for the light-dependent transcription at the psbD LRP. similar to S
MSGI1_67818	NODE_78375_length_187_cov_67.433159	52.6	35	10.2	24.6	0	0	2.4	0	stress.biotic	"transferase family protein  similar to CHAT (ACETYL COA:(Z)-3-HEXEN-1-OL ACETYLTRANSFERASE), acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase [Arabidopsis thaliana] (TAIR:AT3G03480.1); similar to benzoyl coenzyme A: benzyl alcohol benzoyl transferase [Petun"
MSGI1_100803	NODE_7838_length_132_cov_213.924240	271.7	201.6	133.6	32	0	-2.1	1	2.7	not assigned.unknown	not assigned.unknown
MSGI1_119028	NODE_78396_length_61_cov_24.836065	11.4	10.4	0.4	0	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_86536	NODE_78419_length_151_cov_11.185431	10.8	0.2	3.4	0.5	-5.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_50127	NODE_78437_length_245_cov_9.983673	7.3	11.4	0.3	0.3	0	0	0	5.2	not assigned.unknown	not assigned.unknown
MSGI1_79173	NODE_78458_length_163_cov_3.607362	4.1	25.5	33	6.3	2.6	-2.4	-3	2	not assigned.unknown	not assigned.unknown
MSGI1_105267	NODE_78501_length_127_cov_8.456693	8.5	24.4	8.3	5.9	0	0	0	2	not assigned.unknown	not assigned.unknown
MSGI1_119016	NODE_78526_length_61_cov_7.836066	5	21	10.8	3.7	0	0	0	2.5	not assigned.unknown	not assigned.unknown
MSGI1_119014	NODE_7855_length_61_cov_171.770493	8.2	32	19.5	42.4	2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_25174	NODE_78566_length_425_cov_14.160000	2	17.8	3.6	9.2	3.2	0	0	0	protein.degradation.ubiquitin.E3.RING	armadillo/beta-catenin repeat family protein / U-box domain-containing family protein  similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT1G67530.1); similar to U-box domain-cont
MSGI1_66550	NODE_78588_length_190_cov_5.352632	1.4	2.9	25.7	3.8	0	-2.8	-4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_74484	NODE_78711_length_172_cov_8.174418	5.8	8.8	38.4	29.5	0	0	-2.7	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_43628	NODE_78744_length_275_cov_13.072727	18.2	20.6	0	0	0	0	5.2	5.4	not assigned.unknown	not assigned.unknown
MSGI1_66548	NODE_788_length_190_cov_156.578949	95.4	75.8	282.4	405.8	0	0	-1.6	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_12367	NODE_7888_length_678_cov_11.693215	4	14.4	6.3	32.8	0	2.4	0	0	protein.postranslational modification	"CIPK4 (CBL-INTERACTING PROTEIN KINASE 4); kinase CBL-interacting protein kinase similar to CIPK7 (CBL-INTERACTING PROTEIN KINASE 7), kinase [Arabidopsis thaliana] (TAIR:AT3G23000.1); similar to CBL-interacting protein kinase 5 [Populus trichocarpa] (GB:A"
MSGI1_49873	NODE_7892_length_246_cov_12.325203	0.1	0.5	19.2	13.8	0	0	-7.6	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_107231	NODE_78948_length_125_cov_14.840000	7.1	14.4	30	15.9	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_66148	NODE_78958_length_191_cov_16.785341	35	8.4	2.9	3.6	-2.1	0	3.6	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_118984	NODE_78967_length_61_cov_3.688524	0	12.2	0	0.8	4.6	0	0	3.9	not assigned.unknown	not assigned.unknown
MSGI1_61122	NODE_78973_length_205_cov_6.209756	2.3	3.2	154.5	4.3	0	-5.2	-6.1	0	amino acid metabolism.degradation.aspartate family.methionine.methionine gamma-lyase	"ATMGL; catalytic/ methionine gamma-lyase Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methio"
MSGI1_57723	NODE_7915_length_216_cov_14.379630	4.6	7.7	21.7	9.2	0	0	-2.2	0	stress.biotic	avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24390.1); similar to Os06g0702700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058493.1); similar to h
MSGI1_78614	NODE_79159_length_164_cov_7.878049	14	0.1	9.3	3.6	-7.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_115359	NODE_7922_length_84_cov_169.797623	35.8	35	35	9.7	0	-1.9	0	1.9	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	"phenylalanine ammonia-lyase, putative  Identical to Phenylalanine ammonia-lyase 4 (EC 4.3.1.5) (PAL4) [Arabidopsis Thaliana] (GB:Q9SS45;GB:Q53ZM8); similar to PAL2 (phenylalanine ammonia-lyase 2), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:"
MSGI1_101659	NODE_79248_length_131_cov_14.824428	15.5	2.5	0	0	0	0	5	0	not assigned.unknown	not assigned.unknown
MSGI1_27225	NODE_7939_length_399_cov_33.791981	8.4	27.3	7.1	7	0	0	0	2	not assigned.unknown	not assigned.unknown
MSGI1_110233	NODE_79515_length_122_cov_8.139344	8.6	11.1	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_21965	NODE_7954_length_470_cov_16.746809	7	9.2	22.7	34.6	0	0	0	-1.9	cell wall	"SCPL31 (serine carboxypeptidase-like 31); serine carboxypeptidase  similar to SCPL30 (serine carboxypeptidase-like 30), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT4G15100.1); similar to serine carboxypeptidase S10 family protein [Arabidopsis"
MSGI1_21965	NODE_7954_length_470_cov_16.746809	7	9.2	22.7	34.6	0	0	0	-1.9	protein.degradation.serine protease	"SCPL31 (serine carboxypeptidase-like 31); serine carboxypeptidase  similar to SCPL30 (serine carboxypeptidase-like 30), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT4G15100.1); similar to serine carboxypeptidase S10 family protein [Arabidopsis"
MSGI1_109237	NODE_79543_length_123_cov_7.130081	10.9	15.9	0	0	0	0	4.4	5	not assigned.unknown	not assigned.unknown
MSGI1_6498	NODE_7969_length_940_cov_17.094681	0.9	19.6	1.8	10.7	4.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_118971	NODE_7970_length_61_cov_17.229507	4.7	5.9	12.8	24.7	0	0	0	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_97425	NODE_79709_length_136_cov_4.161765	4.4	10.4	21.9	6.6	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_12458	NODE_7973_length_675_cov_19.020741	2.6	2.2	38.4	33.7	0	0	-3.9	-3.9	cell wall	"peroxidase, putative  Identical to Peroxidase 53 precursor (EC 1.11.1.7) (Atperox P53) (ATPA2) (PER53) [Arabidopsis Thaliana] (GB:Q42578); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G06730.1); similar to Peroxidase A2 (GB:P80679); co"
MSGI1_12458	NODE_7973_length_675_cov_19.020741	2.6	2.2	38.4	33.7	0	0	-3.9	-3.9	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 53 precursor (EC 1.11.1.7) (Atperox P53) (ATPA2) (PER53) [Arabidopsis Thaliana] (GB:Q42578); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G06730.1); similar to Peroxidase A2 (GB:P80679); co"
MSGI1_34180	NODE_7980_length_333_cov_11.267267	3.3	16.7	10.6	1.4	0	0	0	3.6	RNA.regulation of transcription.PHOR1	U-box domain-containing protein  similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G37490.1); similar to syringolide-induced protein 13-1-1 [Glycine max] (GB:BAB86896.1); contains InterPro domain Armadillo-like helical; (InterPro:
MSGI1_111543	NODE_79846_length_117_cov_11.820513	0.1	9.8	3.8	51.2	0	3.8	0	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_33507	NODE_7990_length_338_cov_11.674556	0	0.4	20.8	12.7	0	0	-5.4	-5	not assigned.unknown	not assigned.unknown
MSGI1_111419	NODE_7994_length_118_cov_29.101694	12	12.4	0	0.3	0	0	4.6	5.4	transport.unspecified anions	BOR1 (REQUIRES HIGH BORON 1); anion exchanger Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitat
MSGI1_34755	NODE_7997_length_329_cov_30.607903	13.8	10.9	37	11.2	0	-1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_61121	NODE_79982_length_205_cov_8.829268	10.7	4.3	0.2	0	0	0	5.7	0	not assigned.unknown	not assigned.unknown
MSGI1_105251	NODE_79988_length_127_cov_9.771653	5.4	8.8	13.7	0.8	0	-4.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_106252	NODE_79997_length_126_cov_9.206349	9.6	12.8	0	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_61853	NODE_80_length_203_cov_38.802956	0.1	0.2	9.2	42.5	0	2.2	0	-7.7	Co-factor and vitamine metabolism.thiamine	Encodes ThiC involved in thiamine biosynthesis.    Translation of ThiC is regulated by a riboswitch in the 3' of untranslated region of the messenger RNA.  similar to putative thiamin biosynthesis protein [Oryza sativa] (GB:AAK26130.1); similar to thiamin
MSGI1_70875	NODE_80007_length_180_cov_4.322222	8	0.7	12.5	0.4	0	-5	0	0	lipid metabolism.lipid degradation.beta-oxidation.acyl CoA reductase	"acyl CoA reductase, putative  similar to acyl CoA reductase, putative / male-sterility protein, putative [Arabidopsis thaliana] (TAIR:AT5G22500.1); similar to acyl CoA reductase [Hevea brasiliensis] (GB:AAR88762.1); contains InterPro domain Male sterilit"
MSGI1_45537	NODE_80100_length_266_cov_12.631579	32.8	16.2	8.7	15.3	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_66977	NODE_80123_length_189_cov_7.566138	14.2	8	1.7	5.4	0	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_91354	NODE_80141_length_144_cov_32.729168	23.3	13.5	0.7	0.2	0	0	5.1	6.1	RNA.regulation of transcription.unclassified	RPT2 (ROOT PHOTOTROPISM 2); protein binding light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis Identical to Root phototropism protein 2 (RPT2) [Arabidopsis Thaliana] (GB:Q682S0;GB:O04343;GB:O04344;G
MSGI1_91354	NODE_80141_length_144_cov_32.729168	23.3	13.5	0.7	0.2	0	0	5.1	6.1	signalling.light	RPT2 (ROOT PHOTOTROPISM 2); protein binding light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis Identical to Root phototropism protein 2 (RPT2) [Arabidopsis Thaliana] (GB:Q682S0;GB:O04343;GB:O04344;G
MSGI1_16371	NODE_8015_length_570_cov_166.019302	165.2	214.5	0.3	0.1	0	0	9.1	11.1	not assigned.unknown	not assigned.unknown
MSGI1_99062	NODE_80162_length_134_cov_5.582089	5.9	11.6	0.2	0.3	0	0	0	5.3	not assigned.unknown	not assigned.unknown
MSGI1_102542	NODE_80198_length_130_cov_12.500000	24.6	13.2	3.3	3.9	0	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_92798	NODE_80199_length_142_cov_2.936620	1	13.6	1.7	7.7	3.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_89864	NODE_80239_length_146_cov_3.938356	0.7	3.4	12	1.9	0	0	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_22312	NODE_8035_length_465_cov_70.995697	1	1.5	187	10.2	0	-4.2	-7.5	0	not assigned.unknown	not assigned.unknown
MSGI1_103443	NODE_80365_length_129_cov_10.519380	9.9	17.2	5.6	0.5	0	0	0	5.1	not assigned.unknown	not assigned.unknown
MSGI1_85214	NODE_80408_length_153_cov_4.470588	2.8	11.9	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_83312	NODE_8043_length_156_cov_24.788462	3.7	26.2	2	2.8	2.8	0	0	3.2	not assigned.unknown	not assigned.unknown
MSGI1_60456	NODE_80430_length_207_cov_8.541062	18.9	2.4	4	2.6	-3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_118942	NODE_8050_length_61_cov_26.606558	0	0	31.9	10.7	0	0	-6	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_103440	NODE_80505_length_129_cov_4.193799	2.4	2.2	20.7	17.1	0	0	-3.1	-3	not assigned.unknown	not assigned.unknown
MSGI1_99055	NODE_8053_length_134_cov_9.261194	5.5	7.2	24.9	16.5	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_106242	NODE_80568_length_126_cov_8.507936	8.6	15.2	5.2	1.3	0	0	0	3.5	not assigned.unknown	not assigned.unknown
MSGI1_79767	NODE_80589_length_162_cov_17.586420	22	7.2	3.5	1.8	0	0	2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_43860	NODE_8061_length_274_cov_17.908760	0	0	33.1	44.8	0	0	-6	-6.5	stress.abiotic.heat	"heat shock protein 70, putative / HSP70, putative  similar to HSP91 (Heat shock protein 91) [Arabidopsis thaliana] (TAIR:AT1G79930.2); similar to ATP binding [Arabidopsis thaliana] (TAIR:AT1G11660.2); similar to 97 kDa heat shock protein (Heat shock prot"
MSGI1_30729	NODE_8063_length_362_cov_53.674034	27.1	31.8	0	0	0	0	5.8	6	not assigned.unknown	not assigned.unknown
MSGI1_113254	NODE_80636_length_103_cov_42.106796	6	32.3	8.3	4.9	2.4	0	0	2.7	not assigned.unknown	not assigned.unknown
MSGI1_118933	NODE_8064_length_61_cov_17.098360	16.8	23.4	47.1	25.9	0	0	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_78607	NODE_80660_length_164_cov_3.725610	5.4	3.5	419.8	4.9	0	-6.4	-6.3	0	not assigned.unknown	not assigned.unknown
MSGI1_92795	NODE_80713_length_142_cov_8.450705	7.9	8.4	29.9	22.7	0	0	-1.9	0	protein.degradation.subtilases	XSP1 (XYLEM SERINE PEPTIDASE 1); subtilase  Identical to Xylem serine proteinase 1 precursor (EC 3.4.21.-) (AtXSP1) (Cucumisin- like protein) (XSP1) [Arabidopsis Thaliana] (GB:Q9LLL8;GB:O81324); similar to subtilase family protein [Arabidopsis thaliana]
MSGI1_82691	NODE_80748_length_157_cov_5.146497	3.9	6.2	35.7	3.2	0	-3.5	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_68617	NODE_80751_length_185_cov_7.745946	9.7	16.3	0.6	0.4	0	0	0	5.3	not assigned.unknown	not assigned.unknown
MSGI1_11125	NODE_808_length_719_cov_136.364395	31.6	41.1	117.7	40.4	0	-1.5	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_63245	NODE_80824_length_199_cov_7.613065	7.2	3.9	23.5	2.5	0	-3.2	0	0	signalling.calcium	"calmodulin-related protein, putative  similar to TCH2 (TOUCH 2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G37770.1); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE81417.1); similar to calcium binding protein [Sesbania rostrat"
MSGI1_88534	NODE_80835_length_148_cov_6.135135	7.8	37.9	57.2	15.4	2.3	-1.9	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_100771	NODE_80895_length_132_cov_5.659091	5.5	10.8	0	0	0	0	0	4.4	not assigned.unknown	not assigned.unknown
MSGI1_73599	NODE_80900_length_174_cov_3.678161	3	2.3	24.6	1.7	0	-3.9	-3	0	transport.nitrate	"ATNRT1:2 (NITRATE TRANSPORTER 1:2); calcium ion binding / transporter Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots. similar to nitrate transporter, putative [Arabidopsis thal"
MSGI1_82689	NODE_8091_length_157_cov_13.929936	2.1	6	16.3	10.8	0	0	-3	0	transport.potassium	"potassium transporter, putative  Identical to Potassium transporter 8 (AtPOT8) (AtHAK8) (POT8) [Arabidopsis Thaliana] (GB:Q9M7J9;GB:Q9LEQ2); similar to KT2 (POTASSIUM TRANSPORTER 2) [Arabidopsis thaliana] (TAIR:AT2G40540.2); similar to KUP3 (K+ uptake pe"
MSGI1_118912	NODE_80913_length_61_cov_7.360656	4.7	7.9	28.7	18.1	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_85205	NODE_80926_length_153_cov_8.222222	7.1	30	0.2	0.7	2.1	0	0	5.4	not assigned.unknown	not assigned.unknown
MSGI1_52560	NODE_80927_length_235_cov_8.251064	5.6	15.8	4.3	0.7	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_99052	NODE_80940_length_134_cov_4.074627	11.3	0.3	19.4	1	-5.2	-4.3	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	"auxin-responsive protein, putative  similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G21210.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12778.1); contains InterPro domain Auxin responsive SAUR prot"
MSGI1_118908	NODE_80955_length_61_cov_25.393442	23.7	0	4	1.6	-5.6	0	2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_32734	NODE_81016_length_344_cov_11.322675	8.7	47.7	6.1	18	2.5	0	0	1.4	not assigned.unknown	not assigned.unknown
MSGI1_23925	NODE_8104_length_441_cov_21.832199	0	0	37.4	38.1	0	0	-6.2	-6.3	not assigned.unknown	not assigned.unknown
MSGI1_91344	NODE_81041_length_144_cov_8.111111	7.6	78.8	0	0.5	3.4	0	0	7.3	not assigned.unknown	not assigned.unknown
MSGI1_98221	NODE_81052_length_135_cov_4.266667	10	4.9	17.6	2.6	0	-2.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_118899	NODE_81061_length_61_cov_5.196721	2.1	3.1	23.1	2.5	0	-3.2	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_101638	NODE_8108_length_131_cov_4.603054	0	0	12.9	9.7	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_57984	NODE_81089_length_215_cov_3.241860	2	3.6	17.9	4.7	0	0	-3.2	0	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS8 (Arabidopsis thaliana trehalose phosphatase/synthase 8); transferase, transferring glycosyl groups Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose"
MSGI1_25663	NODE_8109_length_418_cov_190.724884	216.7	134.4	34.6	45.4	0	0	2.6	1.6	cell wall	TUA5 (tubulin alpha-5) Encodes an isoform of alpha tubulin. Closely related to adjacent gene TUA3 suggesting recent duplication. Identical to Tubulin alpha-3/alpha-5 chain (TUBA5) [Arabidopsis Thaliana] (GB:P20363); similar to TUA3 (tubulin alpha-3) [Ara
MSGI1_25663	NODE_8109_length_418_cov_190.724884	216.7	134.4	34.6	45.4	0	0	2.6	1.6	cell.organisation	TUA5 (tubulin alpha-5) Encodes an isoform of alpha tubulin. Closely related to adjacent gene TUA3 suggesting recent duplication. Identical to Tubulin alpha-3/alpha-5 chain (TUBA5) [Arabidopsis Thaliana] (GB:P20363); similar to TUA3 (tubulin alpha-3) [Ara
MSGI1_96663	NODE_81105_length_137_cov_5.868613	5.7	33.7	0	0	2.6	0	0	6.1	not assigned.unknown	not assigned.unknown
MSGI1_58288	NODE_81132_length_214_cov_4.757010	5.9	1.1	1.8	25	0	3.8	0	-4.5	stress.biotic	"ATPRB1 (Arabidopsis thaliana basic pathogenesis-related protein 1) pathogenesis related protein, encodes a basic PR1-like protein. Expresses in flowers, roots, and not in leaves and responses to ethylene and methyl jasmonate. Salicylic acid represses gen"
MSGI1_41539	NODE_8114_length_286_cov_15.367133	5.2	8.3	24.5	21.1	0	0	-2.2	0	protein.synthesis.elongation	"mitochondrial elongation factor, putative  Identical to Probable elongation factor G, mitochondrial precursor (mEF-G) [Arabidopsis Thaliana] (GB:Q9C641); similar to mitochondrial elongation factor, putative [Arabidopsis thaliana] (TAIR:AT1G45332.1); simi"
MSGI1_95878	NODE_81199_length_138_cov_5.173913	6.6	61.8	64	23.7	3.2	-1.4	-3.3	1.4	not assigned.unknown	not assigned.unknown
MSGI1_74470	NODE_8120_length_172_cov_180.703491	82.9	35.9	45.7	45	-1.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_81490	NODE_81226_length_159_cov_40.446541	12.2	0.1	5.3	0.9	-6.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_52013	NODE_81266_length_237_cov_3.607595	2.2	3.4	23.8	1.3	0	-4.2	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_57722	NODE_81287_length_216_cov_4.416667	3.8	22.9	1.9	12.1	2.6	0	0	0	lipid metabolism.FA synthesis and FA elongation.beta ketoacyl CoA synthase	beta-ketoacyl-CoA synthase family protein  Identical to 3-ketoacyl-CoA synthase 12 precursor (EC 2.3.1.-) (KCS-12) (Very-long- chain fatty acid condensing enzyme 12) (VLCFA condensing enzyme 12) (KCS12) [Arabidopsis Thaliana] (GB:Q9SIB2;GB:Q8LFQ0); simil
MSGI1_79155	NODE_81308_length_163_cov_33.165646	15.2	22.3	12.2	37	0	1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_76998	NODE_81361_length_167_cov_6.730539	2.8	4.1	40.3	6.4	0	-2.7	-3.8	0	transport.amino acids	amino acid transporter family protein  similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT2G39130.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABE77592.1); contains InterPro domain Amino acid/p
MSGI1_78598	NODE_81377_length_164_cov_8.390244	6.4	0.6	45.4	0.4	0	-6.8	-2.8	0	transporter.sugars	"ATINT2 (INOSITOL TRANSPORTER 2); carbohydrate transporter/ sugar porter  Identical to Probable inositol transporter 2 (INT2) [Arabidopsis Thaliana] (GB:Q9C757); similar to ATINT3 (INOSITOL TRANSPORTER 3), carbohydrate transporter/ sugar porter [Arabidops"
MSGI1_71719	NODE_81392_length_178_cov_40.898876	52	42.3	4.9	26.7	0	2.4	3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_98216	NODE_81410_length_135_cov_3.222222	1.9	2.7	24.3	3.6	0	-2.8	-3.7	0	development.unspecified	seven in absentia (SINA) family protein  Identical to E3 ubiquitin-protein ligase SINAT3 (EC 6.3.2.-) (Seven in absentia homolog 3) (SINAT3) [Arabidopsis Thaliana] (GB:Q84JL3;GB:Q8LFQ3;GB:Q9M359); similar to seven in absentia (SINA) family protein [Arabi
MSGI1_117954	NODE_81420_length_63_cov_35.730160	3.9	21.1	2.7	18.6	2.4	2.8	0	0	RNA.regulation of transcription.GRAS transcription factor family	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_69965	NODE_81433_length_182_cov_4.906593	2.6	5.9	67.8	1.9	0	-5.2	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_92791	NODE_81437_length_142_cov_25.302816	35.2	9.3	12	10.1	-1.9	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_99866	NODE_81449_length_133_cov_4.939850	4.7	5	19.3	3.6	0	-2.4	0	0	mitochondrial electron transport / ATP synthesis.electron transfer flavoprotein	"ETFALPHA (ELECTRON TRANSFER FLAVOPROTEIN ALPHA); FAD binding / electron carrier Encodes the electron transfer flavoprotein ETF alpha, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF beta is At5g43430.1) in Arabidopsis."
MSGI1_75982	NODE_8146_length_169_cov_75.041420	28.7	52.3	71.5	57	0	0	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_118857	NODE_81521_length_61_cov_4.540984	19.4	0.5	10	1.6	-5.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_17938	NODE_8159_length_539_cov_15.593692	1.5	2.4	19.5	1	0	-4.3	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_111413	NODE_816_length_118_cov_74.779663	26.1	33.9	0	0	0	0	5.7	6.1	not assigned.unknown	not assigned.unknown
MSGI1_117953	NODE_816_length_63_cov_34.412697	15.6	19.5	0.4	0.4	0	0	5.3	5.6	polyamine metabolism.synthesis.SAM decarboxylase	adenosylmethionine decarboxylase family protein  Identical to S-adenosylmethionine decarboxylase proenzyme 2 (EC 4.1.1.50) (AdoMetDC 2) (SamDC 2) [Contains: S-adenosylmethionine decarboxylase 2 alpha chain; S-adenosylmethionine decarboxylase 2 beta chain]
MSGI1_90607	NODE_8161_length_145_cov_5.200000	1.1	0.3	11.1	0.2	0	-5.8	0	0	hormone metabolism.cytokinin.synthesis-degradation	"DOGT1 (DON-GLUCOSYLTRANSFERASE); UDP-glycosyltransferase/ transferase, transferring glycosyl groups Encodes a DON-Glucosyltransferase.  The UGT73C5 glucosylates both brassinolide and castasterone in the 23-O position. The enzyme is presumably involved in"
MSGI1_90607	NODE_8161_length_145_cov_5.200000	1.1	0.3	11.1	0.2	0	-5.8	0	0	stress.biotic	"DOGT1 (DON-GLUCOSYLTRANSFERASE); UDP-glycosyltransferase/ transferase, transferring glycosyl groups Encodes a DON-Glucosyltransferase.  The UGT73C5 glucosylates both brassinolide and castasterone in the 23-O position. The enzyme is presumably involved in"
MSGI1_90607	NODE_8161_length_145_cov_5.200000	1.1	0.3	11.1	0.2	0	-5.8	0	0	hormone metabolism.brassinosteroid.synthesis-degradation.sterols.other	"DOGT1 (DON-GLUCOSYLTRANSFERASE); UDP-glycosyltransferase/ transferase, transferring glycosyl groups Encodes a DON-Glucosyltransferase.  The UGT73C5 glucosylates both brassinolide and castasterone in the 23-O position. The enzyme is presumably involved in"
MSGI1_79757	NODE_81639_length_162_cov_9.716049	10.4	14.4	47.1	24.5	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_78052	NODE_81651_length_165_cov_5.860606	6.1	11.3	0	0.2	0	0	0	5.8	transport.misc	transporter-related  similar to organic cation transporter-related [Arabidopsis thaliana] (TAIR:AT1G16390.1); similar to putative organic cation transporter [Oryza sativa (japonica cultivar-group)] (GB:BAC83382.1); contains InterPro domain Organic cation
MSGI1_118846	NODE_81666_length_61_cov_24.459017	16	21.8	4.4	0.8	0	0	0	4.8	misc.UDP glucosyl and glucoronyl transferases	"GAUT12/IRX8/LGT6 (GALACTURONOSYLTRANSFERASE 12); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with  putative galacturonosyltransferase activity"
MSGI1_111759	NODE_81691_length_115_cov_11.486957	12.1	8.9	0	0	0	0	4.6	0	RNA.transcription	ATRLI2 (Arabidopsis thaliana RNase L inhibitor protein 2) member of RLI subfamily similar to ATRLI1 (Arabidopsis thaliana RNase L inhibitor protein 1) [Arabidopsis thaliana] (TAIR:AT3G13640.1); similar to RNase L inhibitor-like protein [Oryza sativa (jap
MSGI1_43858	NODE_81701_length_274_cov_4.098540	3.2	4.4	22.9	6.7	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_48310	NODE_8172_length_253_cov_7.221344	0.4	1.7	9.9	14.3	0	0	0	-3.1	not assigned.unknown	not assigned.unknown
MSGI1_26309	NODE_8176_length_410_cov_27.168293	35.2	16.8	10.9	24.6	0	0	1.7	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S14 (RPS14B)  Identical to 40S ribosomal protein S14-2 (RPS14B) [Arabidopsis Thaliana] (GB:Q9CAX6); Identical to 40S ribosomal protein S14-1 (RPS14A) [Arabidopsis Thaliana] (GB:Q9SIH0); similar to 40S ribosomal protein S14 (RPS14A) [
MSGI1_15023	NODE_8179_length_603_cov_9.756219	26.1	1	16.3	0.5	-4.7	-5	0	0	cell wall.pectin*esterases.misc	pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT2G45220.1); similar to putative pectin methylesterase [Populus tremula x Populus tremuloides] (GB:CAC01624.1); similar to Os01g0312500 [Oryza sativa (j
MSGI1_104315	NODE_81809_length_128_cov_4.726562	6.2	4.1	19	2.4	0	-3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_72669	NODE_81865_length_176_cov_6.789773	1.2	6.8	15	3.8	0	0	-3.6	0	misc.cytochrome P450	"CYP71B26 (cytochrome P450, family 71, subfamily B, polypeptide 26); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B26 (EC 1.14.-.-) (CYP71B26) [Arabidopsis Thaliana] (GB:Q9LTL0); similar to CYP71B35 (cytochrome P450, family 71, s"
MSGI1_85192	NODE_81921_length_153_cov_4.104575	1.7	16	0.9	9.8	3.2	0	0	0	cell.organisation	"microtubule motor  similar to ATK4 (ARABIDOPSIS THALIANA KINESIN 4), microtubule motor [Arabidopsis thaliana] (TAIR:AT5G27000.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT3G44730.1); similar to kinesin motor protein-related"
MSGI1_82674	NODE_81934_length_157_cov_5.312102	0.1	2.6	12	1.6	0	0	-6.9	0	RNA.regulation of transcription.NAC domain transcription factor family	"NAP (NAC-LIKE, ACTIVATED BY AP3/PI); transcription factor Encodes a member of the NAC transcription factor gene family.  It is expressed in floral primordia and upregulated by AP3 and PI.  Its expression is associated with leaf senescence. Identical to N"
MSGI1_55742	NODE_8197_length_223_cov_145.430496	29.2	76.3	28.4	17.3	1.4	0	0	2.1	stress.biotic	EDS1 (ENHANCED DISEASE SUSCEPTIBILITY 1); signal transducer/ triacylglycerol lipase Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases. similar to lipase class 3 family protein / disease resistance
MSGI1_71246	NODE_8200_length_179_cov_15.162011	0	0	12.2	21.3	0	0	-4.6	-5.4	not assigned.unknown	not assigned.unknown
MSGI1_23825	NODE_82004_length_443_cov_13.855531	1.4	15.5	5.9	17.5	3.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_35282	NODE_82051_length_325_cov_5.541538	10	12.6	20.1	38.3	0	0	0	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_108134	NODE_82092_length_124_cov_28.935484	5.4	11	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_94324	NODE_82108_length_140_cov_2.007143	1.9	1.7	17.2	2	0	-3.1	-3.2	0	stress.biotic	"disease resistance protein (CC-NBS-LRR class), putative  Identical to Probable disease resistance protein At5g66910 [Arabidopsis Thaliana] (GB:Q9FKZ0); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G66"
MSGI1_118801	NODE_82197_length_61_cov_13.360656	14.7	9.3	0.4	0	0	0	5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_19432	NODE_8221_length_516_cov_9.306202	2.2	4.5	77.1	7.5	0	-3.4	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_93530	NODE_82308_length_141_cov_24.418440	11	12.9	0	0.2	0	0	4.5	6	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_93530	NODE_82308_length_141_cov_24.418440	11	12.9	0	0.2	0	0	4.5	6	development.unspecified	nodulin family protein  similar to nodulin family protein [Arabidopsis thaliana] (TAIR:AT2G16660.1); similar to Nodulin-like; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE77921.1); similar to Os09g0536700 [Oryza sativa (japonica cultiv
MSGI1_60777	NODE_82359_length_206_cov_3.757282	2.4	2	44.5	0.9	0	-5.6	-4.2	0	protein.postranslational modification	"HAB1 (HOMOLOGY TO ABI1); protein phosphatase type 2C mutant has ABA hypersensitive inhibition of seed germination; Protein Phosphatase 2C similar to HAB2 (Homology to ABI2), protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT1G17550.1); similar t"
MSGI1_11124	NODE_8237_length_719_cov_30.699583	1	0.8	83.6	1.2	0	-6.1	-6.4	0	not assigned.unknown	not assigned.unknown
MSGI1_54399	NODE_82463_length_228_cov_8.114035	4.4	5.1	22.3	4.5	0	-2.3	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_105218	NODE_82482_length_127_cov_34.661419	22.8	11.8	3.1	1.6	0	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_43420	NODE_825_length_276_cov_122.286232	99.2	38.3	12.8	32.5	-1.4	0	3	0	protein.degradation.aspartate protease	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G61820.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japoni
MSGI1_87171	NODE_82519_length_150_cov_19.326666	3.2	18	0	0	2.5	0	0	5.2	not assigned.unknown	not assigned.unknown
MSGI1_74463	NODE_82520_length_172_cov_45.639534	49.1	33.5	0	0	0	0	6.6	6.1	not assigned.unknown	not assigned.unknown
MSGI1_107175	NODE_82521_length_125_cov_5.128000	2.6	4.4	5	29.6	0	2.6	0	-2.8	major CHO metabolism.synthesis.starch.AGPase	"APL2 (large subunit of AGP 2) ADP-glucose pyrophosphorylase catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large sub"
MSGI1_72663	NODE_82537_length_176_cov_4.653409	5	5	25.3	2.1	0	-3.6	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_50347	NODE_8256_length_244_cov_9.938524	6.4	4.7	12.9	25.1	0	0	0	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_48946	NODE_8262_length_250_cov_70.491997	104.7	46.5	11.8	26.7	-1.2	0	3.1	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S19 (RPS19A)  Identical to 40S ribosomal protein S19-1 (RPS19A) [Arabidopsis Thaliana] (GB:Q9SGA6); similar to 40S ribosomal protein S19 (RPS19B) [Arabidopsis thaliana] (TAIR:AT5G15520.1); similar to Ribosomal protein S19e [Medicago
MSGI1_98201	NODE_82642_length_135_cov_20.074074	12.4	9.6	0.5	0	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_105215	NODE_82645_length_127_cov_6.086614	5.7	34.9	12.9	18.9	2.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_115731	NODE_8266_length_81_cov_43.209877	0	0	52.8	80.8	0	0	-6.7	-7.3	not assigned.unknown	not assigned.unknown
MSGI1_28840	NODE_8270_length_381_cov_17.362206	0.3	0.5	26.7	8.7	0	0	-6.5	0	not assigned.unknown	not assigned.unknown
MSGI1_56270	NODE_8271_length_221_cov_129.968323	12	60.2	19.1	6.4	2.3	0	0	3.2	not assigned.unknown	not assigned.unknown
MSGI1_82057	NODE_82714_length_158_cov_12.329114	1	12.3	1.6	6.6	3.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_43626	NODE_8276_length_275_cov_9.283636	0	0	9.8	24.7	0	0	0	-5.6	cell wall	ATPHB3 (PROHIBITIN 3) prohibitin 3 similar to ATPHB4 (PROHIBITIN 4) [Arabidopsis thaliana] (TAIR:AT3G27280.1); similar to mitochondrial prohibitin 1 [Petunia x hybrida] (GB:AAW83328.1); similar to PHB1 [Nicotiana benthamiana] (GB:AAZ30376.1); contains Int
MSGI1_115929	NODE_82811_length_79_cov_18.835443	12.5	18.7	2.8	2.9	0	0	0	2.7	not assigned.unknown	not assigned.unknown
MSGI1_118749	NODE_82820_length_61_cov_6.508197	4.1	11.1	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_85182	NODE_82861_length_153_cov_7.019608	7.2	111.8	0	0	4	0	0	7.8	cell wall	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_85182	NODE_82861_length_153_cov_7.019608	7.2	111.8	0	0	4	0	0	7.8	protein.degradation.subtilases	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_89832	NODE_82985_length_146_cov_19.513699	6.5	10.7	27.2	16.5	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_109175	NODE_8300_length_123_cov_21.504065	0.1	0.4	40.6	0.3	0	-7.1	-8.7	0	not assigned.unknown	not assigned.unknown
MSGI1_10658	NODE_8301_length_736_cov_93.199730	30.2	56.9	24.3	23.9	0	0	0	1.3	not assigned.unknown	not assigned.unknown
MSGI1_108114	NODE_83043_length_124_cov_1.774194	0.7	1.4	15	4.6	0	0	-4.4	0	cell.organisation	"kinesin motor protein-related  similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT2G22610.1); similar to kinesin motor protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99856.1); contains InterPro domain Ki"
MSGI1_38358	NODE_83075_length_304_cov_18.023026	7.1	12.2	32	8.2	0	-2	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_59516	NODE_83084_length_210_cov_5.057143	5.7	11.1	1.3	0.2	0	0	0	5.8	not assigned.unknown	not assigned.unknown
MSGI1_109171	NODE_83099_length_123_cov_9.016260	9.4	13.1	36.4	9.5	0	-1.9	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_83918	NODE_83116_length_155_cov_2.935484	4.6	10.7	0.2	0.2	0	0	0	5.7	not assigned.unknown	not assigned.unknown
MSGI1_99836	NODE_83167_length_133_cov_4.827068	3.5	7.8	16	0.8	0	-4.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_56268	NODE_83179_length_221_cov_8.968326	5.6	6.2	20.1	3	0	-2.7	0	0	cell.organisation	ankyrin repeat family protein  similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G07710.1); similar to Ankyrin [Medicago truncatula] (GB:ABE80012.1); contains InterPro domain Ankyrin; (InterPro:IPR002110)
MSGI1_116169	NODE_83206_length_77_cov_12.662337	8.7	6.7	40.2	1.8	0	-4.5	-2.2	0	protein.degradation.cysteine protease	"cysteine-type peptidase  similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G48350.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:"
MSGI1_21964	NODE_8322_length_470_cov_76.446808	13.6	51.9	18.9	6.1	1.9	0	0	3.1	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT5G05960.1); similar to hypothetical protein [Plantago major]
MSGI1_24433	NODE_8324_length_434_cov_9.960830	8.6	5.8	31	3.8	0	-3	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_111928	NODE_83243_length_114_cov_12.535088	7.2	14.1	1.7	1.7	0	0	0	3.1	not assigned.unknown	not assigned.unknown
MSGI1_95855	NODE_83255_length_138_cov_7.797101	0.5	11.4	5.9	11.3	4.5	0	0	0	RNA.regulation of transcription.C2H2 zinc finger family	"zinc finger (C2H2 type) protein (WIP3)  similar to TT1 (TRANSPARENT TESTA 1), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34790.1); similar to Os05g0444200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055679.1); similar to Zinc finger, C2"
MSGI1_115729	NODE_83308_length_81_cov_21.530865	7.1	45.5	16.8	8.5	2.7	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_101601	NODE_83322_length_131_cov_5.549618	5	7	19	2.9	0	-2.7	0	0	misc.cytochrome P450	"CYP707A3 (cytochrome P450, family 707, subfamily A, polypeptide 3); oxygen binding Encodes a protein with ABA 8'-hydroxylase activity; involved in ABA catabolism. Mutant analyses show that disruption in the gene results in more drought tolerance whereas"
MSGI1_99018	NODE_83323_length_134_cov_7.470149	7.7	25	3.7	4.1	0	0	0	2.6	amino acid metabolism.synthesis.aromatic aa.phenylalanine.arogenate dehydratase / prephenate dehydratase	PD1 (PREPHENATE DEHYDRATASE 1); prephenate dehydratase  similar to prephenate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT1G08250.1); similar to prephenate dehydratase [Ipomoea trifida] (GB:AAS79603.1); contains InterPro domain Prephenate de
MSGI1_86490	NODE_83339_length_151_cov_4.980133	5.3	1	37.4	4.3	0	-3.1	-2.8	0	misc.peroxidases	"peroxidase 72 (PER72) (P72) (PRXR8)  Identical to Peroxidase 72 precursor (EC 1.11.1.7) (Atperox P72) (PRXR8) (ATP6a) (PER72) [Arabidopsis Thaliana] (GB:Q9FJZ9;GB:Q43736); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G36430.1); similar"
MSGI1_84547	NODE_83350_length_154_cov_7.662338	7.1	15.4	0.7	0.2	0	0	0	6.3	not assigned.unknown	not assigned.unknown
MSGI1_69959	NODE_83369_length_182_cov_4.362638	16.9	2.2	4.8	0.8	-2.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_88501	NODE_83410_length_148_cov_4.310811	2.6	4.2	18.4	3.1	0	-2.6	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_97371	NODE_83416_length_136_cov_11.102942	4.1	5.3	23.9	7.4	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_48094	NODE_83428_length_254_cov_54.610237	28.3	62	108.4	68.1	1.1	0	-1.9	0	stress.abiotic.heat	HSP70 (heat shock protein 70); ATP binding  similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G
MSGI1_92767	NODE_83528_length_142_cov_11.119719	40.8	16	29.7	36.1	-1.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_81469	NODE_83565_length_159_cov_6.327044	5.6	19	27.6	5.5	0	-2.3	-2.3	0	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS6 (Arabidopsis thaliana trehalose phosphatase/synthase 6); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that"
MSGI1_116261	NODE_8358_length_76_cov_36.513157	0	0	50.5	94.7	0	0	-6.7	-7.6	not assigned.unknown	not assigned.unknown
MSGI1_87806	NODE_83585_length_149_cov_5.315436	3.8	2.9	65.3	0.5	0	-7	-4.1	0	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase	"NCED2 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2) Encodes 9-<i>cis</i>-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition. similar to NCED5 (NINE-CIS-EPOXYC"
MSGI1_89174	NODE_8359_length_147_cov_6.040816	0.1	0	9.3	12.1	0	0	0	-4.6	fermentation.PDC	pyruvate decarboxylase family protein  similar to CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) [Arabidopsis thaliana] (TAIR:AT3G48560.1); similar to Os01g0505400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043144.1); similar to COG0028: Thiamine
MSGI1_18823	NODE_8359_length_525_cov_63.224762	38	39.6	0	0.1	0	0	6.2	8.6	not assigned.unknown	not assigned.unknown
MSGI1_34906	NODE_8364_length_328_cov_75.140244	43.5	52.8	87.5	32.4	0	-1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_118675	NODE_83674_length_61_cov_6.180328	1.1	1.6	149.2	3.3	0	-5.5	-7.1	0	not assigned.unknown	not assigned.unknown
MSGI1_59851	NODE_8369_length_209_cov_12.822967	110.7	13.4	9	14.5	-3	0	3.6	0	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit At1g60390 precursor (Aromatic-rich glycoprotein At1g60390) [Arabidopsis Thaliana] (GB:O80760); similar to JP630, polygalacturonase"
MSGI1_72659	NODE_83690_length_176_cov_20.147728	26.4	15.9	43.1	4.9	0	-3.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_118671	NODE_837_length_61_cov_73.344261	55	33.8	52.3	20.6	0	-1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_45296	NODE_8370_length_267_cov_13.191011	1.2	1.3	22.5	3.4	0	-2.7	-4.2	0	secondary metabolism.isoprenoids.non-mevalonate pathway	MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2)  Identical to Membrane-anchored ubiquitin-fold protein 2 (Membrane-anchored ub-fold protein 2) (AtMUB2) (NTGP5) (MUB2) [Arabidopsis Thaliana] (GB:Q8LCS8;GB:Q9LF36); similar to MUB1 (MEMBRANE-ANCHORED UBIQ
MSGI1_98187	NODE_83730_length_135_cov_7.911111	3.9	37	32.7	39.4	3.2	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_117017	NODE_8375_length_70_cov_58.757141	12.3	38.2	22.3	8.4	1.6	0	0	2.2	not assigned.unknown	not assigned.unknown
MSGI1_118668	NODE_83767_length_61_cov_2.901639	7.8	5	23.9	0.8	0	-4.9	0	0	protein.degradation.cysteine protease	"cysteine proteinase, putative  similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G48350.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (Int"
MSGI1_62491	NODE_83769_length_201_cov_5.970149	19.4	3.8	4.1	3.6	-2.4	0	2.2	0	cell wall.pectin*esterases.acetyl esterase	"pectinacetylesterase, putative  similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT3G05910.1); similar to Pectinacetylesterase [Medicago truncatula] (GB:ABD33181.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963"
MSGI1_118664	NODE_83785_length_61_cov_15.163935	9.3	16.4	0	0	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_100732	NODE_83799_length_132_cov_6.045455	3.2	0.1	307.7	1	0	-8.3	-6.6	0	cell wall.modification	"ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1) EXPANSIN-RELATED. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-like B1 precursor (AtEXLB1) (AtEXPR1) (At-EXPR1) (Ath- ExpBeta-3.1) (EXLB1) [Arab"
MSGI1_10176	NODE_838_length_755_cov_127.888741	94.2	41.9	74.7	35.5	-1.2	-1.1	0	0	amino acid metabolism.degradation.aspartate family.asparagine.L-asparaginase	"L-asparaginase, putative / L-asparagine amidohydrolase, putative  Identical to Probable L-asparaginase 2 precursor (EC 3.5.1.1) (L-asparagine amidohydrolase 2) [Contains: L-asparaginase 2 subunit alpha; L- asparaginase 2 subunit beta] [Arabidopsis Thalia"
MSGI1_35436	NODE_83820_length_324_cov_8.743827	2.8	10.3	74.9	11.3	0	-2.7	-4.7	0	stress.abiotic.heat	"heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)  Identical to Heat shock cognate 70 kDa protein 3 (Hsc70.3) (HSC70-3) [Arabidopsis Thaliana] (GB:O65719;GB:Q42345); similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR"
MSGI1_100730	NODE_8387_length_132_cov_4.666667	3.6	1.2	42.5	10.1	0	-2.1	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_109149	NODE_83924_length_123_cov_10.560976	24	7.4	1.6	0.8	0	0	3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_118660	NODE_83934_length_61_cov_19.754099	2.4	4.1	71	0.8	0	-6.5	-4.9	0	transport.misc	"metal ion binding  similar to ATFP6 (FARNESYLATED PROTEIN 6), metal ion binding [Arabidopsis thaliana] (TAIR:AT4G38580.1); similar to GMFP7 [Glycine max] (GB:AAD09515.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IP"
MSGI1_118658	NODE_83967_length_61_cov_13.524590	15.1	0.2	2	0	-6.2	0	2.9	0	cell wall.cell wall proteins.AGPs	FLA6 (FLA6) fasciclin-like arabinogalactan-protein 6 (Fla6) Identical to Fasciclin-like arabinogalactan protein 6 precursor (FLA6) [Arabidopsis Thaliana] (GB:Q9SIL7;GB:Q9C5Q5); similar to FLA9 (FLA9) [Arabidopsis thaliana] (TAIR:AT1G03870.1); similar to u
MSGI1_38818	NODE_8398_length_301_cov_18.963455	2.9	22.2	33.2	9.4	2.9	-1.8	-3.5	0	RNA.regulation of transcription.C3H zinc finger family	"zinc finger (CCCH-type) family protein  similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT4G29190.1); similar to Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE91976.1); contains InterPro domain Zinc finger, CCCH-type;"
MSGI1_117383	NODE_8404_length_67_cov_29.014925	4.8	18.2	0	0	0	0	0	5.2	not assigned.unknown	not assigned.unknown
MSGI1_50344	NODE_841_length_244_cov_75.995903	86.5	79.9	26.4	24.4	0	0	1.7	1.7	protein.degradation.ubiquitin.proteasom	"RPT2A (regulatory particle triple-A 2A); ATPase 26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA, similar to 26S protease regulatory complex subunit 4, putative [Arabidopsis thaliana] (TAIR:AT2G20140.1); similar to AAA ATPase; 26S proteasome subunit"
MSGI1_79127	NODE_84136_length_163_cov_7.000000	9.1	9.3	40.2	2.7	0	-3.9	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_112880	NODE_8418_length_106_cov_6.047170	12.3	4.9	0	0	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_54939	NODE_8428_length_226_cov_51.039822	9.3	19.2	45.7	16.4	0	-1.5	-2.3	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT3G53980.2); similar to hypothetical protein [Plantago major]
MSGI1_93506	NODE_84280_length_141_cov_6.843972	5.3	6.4	50.3	8.7	0	-2.5	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_31827	NODE_843_length_352_cov_92.647728	59.2	248.6	78.8	49.9	2.1	0	0	2.3	RNA.regulation of transcription.C3H zinc finger family	CZF1/ZFAR1; transcription factor  similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G55980.1); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR0021
MSGI1_30500	NODE_8435_length_364_cov_31.983517	21.8	0.6	51.6	3.5	-5.2	-3.9	-1.2	0	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.short chain alcohol dehydrogenmase (ABA2)	ABA2 (ABA DEFICIENT 2); oxidoreductase Encodes a cytosolic short-chain dehydrogenase/reductase involved in the conversion of xanthoxin to ABA-aldehyde during ABA biosynthesis.  Mutants are insensitive to sucrose and glucose. similar to short-chain dehydro
MSGI1_51549	NODE_8439_length_239_cov_11.748954	2.4	3.6	16.7	10.7	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_102465	NODE_84395_length_130_cov_5.076923	2.4	8.5	32.5	2.9	0	-3.5	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_21829	NODE_8441_length_472_cov_26.944916	5.5	6.5	44.9	13.2	0	-1.8	-3	0	lipid metabolism.lipid degradation.beta-oxidation.acyl CoA DH	"ACX4 (ACYL-COA OXIDASE 4); oxidoreductase Encodes a short-chain acyl-CoA oxidase, which catalyzes the first step of peroxisomal fatty acid beta-oxidation during early, post-germinative growth in oilseed species. Null mutants virtually lack short-chain ac"
MSGI1_48520	NODE_8448_length_252_cov_41.789684	0	0	50.2	39.8	0	0	-6.6	-6.3	not assigned.unknown	not assigned.unknown
MSGI1_34603	NODE_8448_length_330_cov_41.106060	42.6	31.7	15.6	39.7	0	1.3	1.4	0	stress.abiotic.heat	BIP (LUMINAL BINDING PROTEIN); ATP binding luminal binding protein (BiP) Identical to Luminal-binding protein 2 precursor (BiP2) (AtBP2) [Arabidopsis Thaliana] (GB:Q39043;GB:Q39042); Identical to Luminal-binding protein 1 precursor (BiP1) (AtBP1) [Arabido
MSGI1_15940	NODE_8451_length_579_cov_40.291882	82.7	11.9	49.3	28.6	-2.8	0	0	0	nucleotide metabolism.degradation	"ATAPY2 (APYRASE 2) Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY1 causes a complete inhibition of pollen germination. similar to ATAPY1 (APYRASE 1), calmodulin binding [Arabidopsis thaliana] (T"
MSGI1_106172	NODE_8466_length_126_cov_36.230160	3.3	18.5	17.7	8.3	2.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_89166	NODE_84701_length_147_cov_12.761905	5.6	11.9	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_104266	NODE_84779_length_128_cov_11.289062	28.9	15.2	5.7	11.9	0	0	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_60144	NODE_8484_length_208_cov_74.759613	69.8	34.4	65.5	73.2	-1	0	0	-1.1	PS.calvin cyle.seduheptulose bisphosphatase	"SBPASE (sedoheptulose-bisphosphatase); phosphoric ester hydrolase Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate u"
MSGI1_38032	NODE_8491_length_306_cov_12.356209	0.4	4.3	23.5	11.3	0	0	-5.9	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_38032	NODE_8491_length_306_cov_12.356209	0.4	4.3	23.5	11.3	0	0	-5.9	0	development.unspecified	nodulin MtN3 family protein  similar to nodulin MtN3 family protein [Arabidopsis thaliana] (TAIR:AT4G10850.1); similar to Os05g0426000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055599.1); similar to senescence-associated protein-like [Oryza sativ
MSGI1_40616	NODE_8492_length_291_cov_8.707904	12.2	0.4	7.9	2.4	-4.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_73098	NODE_85022_length_175_cov_35.908573	108.9	25.2	30.1	76.2	-2.1	1.3	1.9	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_101587	NODE_8507_length_131_cov_34.977100	57.5	14.4	21.5	71	-2	1.7	1.4	-2.3	not assigned.unknown	not assigned.unknown
MSGI1_59205	NODE_851_length_211_cov_37.364929	0.8	23.2	5.4	25.4	4.9	2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_45944	NODE_8511_length_264_cov_16.378788	28.4	32.7	6.4	17.2	0	0	2.1	0	misc.cytochrome P450	"CYP71B19 (cytochrome P450, family 71, subfamily B, polypeptide 19); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B19 (EC 1.14.-.-) (CYP71B19) [Arabidopsis Thaliana] (GB:Q9LTM4); similar to CYP71B16 (cytochrome P450, family 71, s"
MSGI1_118645	NODE_85183_length_61_cov_19.393442	14.4	21.4	0	0	0	0	4.8	5.4	not assigned.unknown	not assigned.unknown
MSGI1_11297	NODE_852_length_713_cov_28.223001	22.9	37.5	0.8	0.6	0	0	4.8	6	transport.nucleotides	permease-related  similar to permease-related [Arabidopsis thaliana] (TAIR:AT4G13800.1); similar to OSJNBa0069D17.4 [Oryza sativa (japonica cultivar-group)] (GB:CAD40575.1); similar to Os05g0424800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055595
MSGI1_95835	NODE_8526_length_138_cov_9.644928	0	0	17.1	5.8	0	0	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_93500	NODE_85260_length_141_cov_6.163121	7.4	17.8	0.7	0	0	0	0	5.2	not assigned.unknown	not assigned.unknown
MSGI1_49867	NODE_85265_length_246_cov_6.910569	8.6	13.6	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_74452	NODE_8527_length_172_cov_13.197675	5.2	6.3	34.9	4.3	0	-3	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_3839	NODE_8529_length_1194_cov_15.507538	2.8	4.9	22.1	20.9	0	0	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_106164	NODE_8529_length_126_cov_6.253968	6.8	6.6	86.5	17.7	0	-2.3	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_79733	NODE_8532_length_162_cov_12.314815	0.4	1.3	14.4	30.2	0	0	-5.2	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_37119	NODE_8534_length_312_cov_21.689102	3.7	8.9	25.4	16.6	0	0	-2.8	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_37119	NODE_8534_length_312_cov_21.689102	3.7	8.9	25.4	16.6	0	0	-2.8	0	hormone metabolism.ethylene.induced-regulated-responsive-activated	"universal stress protein (USP) family protein  similar to ethylene-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G09740.1); similar to universal stress protein family [Medicago truncatula] (GB:ABE78101.1); contains InterPro domain Universa"
MSGI1_93498	NODE_85341_length_141_cov_4.680851	4.7	11.3	27.4	11.9	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_77482	NODE_8535_length_166_cov_95.072289	15.4	65.2	30	36.9	2.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_118636	NODE_85400_length_61_cov_21.245901	12.3	0.7	0.8	0.4	-4.1	0	3.9	0	RNA.RNA binding	"RNA recognition motif (RRM)-containing protein  similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G20880.1); similar to RNA-binding re (GB:ABE82599.1); contains InterPro domain Nucleotide-binding, alpha-beta plait;"
MSGI1_91992	NODE_85422_length_143_cov_5.958042	0.4	6	11.2	11.6	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_83903	NODE_8545_length_155_cov_163.251617	71	71.3	31.3	31.1	0	0	1.2	1.2	not assigned.unknown	not assigned.unknown
MSGI1_62488	NODE_85470_length_201_cov_17.233831	11.9	3.8	24.4	4.4	0	-2.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_44220	NODE_856_length_272_cov_100.025734	17.1	37.7	0.4	0.6	0	0	5.4	6	not assigned.unknown	not assigned.unknown
MSGI1_65019	NODE_8564_length_194_cov_105.000000	145.2	68.1	25.3	28.3	-1.1	0	2.5	1.3	not assigned.unknown	not assigned.unknown
MSGI1_118615	NODE_8565_length_61_cov_28.770493	44.4	14.7	0	0	-1.6	0	6.5	4.9	not assigned.unknown	not assigned.unknown
MSGI1_94288	NODE_8566_length_140_cov_8.964286	8	3.3	18.6	1.7	0	-3.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_23095	NODE_8573_length_455_cov_13.435164	5	4.7	15	23.6	0	0	0	-2.3	redox.thioredoxin	"ATAPRL5 (APR-LIKE 5); electron carrier/ protein disulfide oxidoreductase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  This protein also belongs to the adenosine 5'-ph"
MSGI1_118602	NODE_8574_length_61_cov_55.032787	34.1	96.5	0	0	1.5	0	6.1	7.6	TCA / org. transformation.other organic acid transformaitons.malic	"ATNADP-ME1 (NADP-MALIC ENZYME 1); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to"
MSGI1_111045	NODE_8577_length_121_cov_483.396698	62.1	223.1	104	74.1	1.8	0	0	1.6	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5); DNA binding / transcription factor/ transcriptional activator encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-5). The protein contains
MSGI1_89161	NODE_85784_length_147_cov_6.571429	5.6	13.3	23.8	6	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_71235	NODE_85788_length_179_cov_7.441341	1.5	6.2	85	0.2	0	-8.7	-5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_118597	NODE_85792_length_61_cov_10.295082	6.7	10.8	0	0.4	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_68198	NODE_85793_length_186_cov_29.731182	14.7	23.8	6.3	5.9	0	0	0	2	not assigned.unknown	not assigned.unknown
MSGI1_44442	NODE_8588_length_271_cov_18.081181	2.5	2.5	21.9	5	0	0	-3.1	0	lipid metabolism.lipid degradation.beta-oxidation.acyl CoA DH	"ACX4 (ACYL-COA OXIDASE 4); oxidoreductase Encodes a short-chain acyl-CoA oxidase, which catalyzes the first step of peroxisomal fatty acid beta-oxidation during early, post-germinative growth in oilseed species. Null mutants virtually lack short-chain ac"
MSGI1_24432	NODE_8589_length_434_cov_17.447004	15.8	3.3	22.5	3.2	0	-2.8	0	0	N-metabolism.N-degradation.glutamate dehydrogenase	GDH1 (GLUTAMATE DEHYDROGENASE 1); oxidoreductase encodes the beta-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells. Identical to Glutamate dehydrogenase 1 (EC 1.4.1.3) (GD
MSGI1_114946	NODE_8589_length_88_cov_61.295456	79.8	49.8	24.2	52.3	0	1.1	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_58283	NODE_85930_length_214_cov_7.331776	3.2	9	28.8	6.7	0	-2.1	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_118583	NODE_85937_length_61_cov_14.950820	30.4	8.3	35.5	16.1	-1.9	0	0	0	protein.targeting	PSB29 (THYLAKOID FORMATION1) Chloroplast-localized Thylakoid formation1 gene product involved in vesicle-mediated formation of thylakoid membranes.  Thf1 antisense lines contain abnormal chloroplasts early in leaf development (chloroplasts have loosely s
MSGI1_60446	NODE_8599_length_207_cov_24.758453	28.6	17.4	169.1	15	0	-3.5	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_34905	NODE_86007_length_328_cov_20.103659	28.6	2	4	0.5	-3.8	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_80307	NODE_86049_length_161_cov_5.608696	6.1	0.5	6.4	11.1	0	0	0	-4.5	cell wall	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_80307	NODE_86049_length_161_cov_5.608696	6.1	0.5	6.4	11.1	0	0	0	-4.5	protein.degradation.subtilases	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_39755	NODE_8605_length_296_cov_9.239865	2	0.3	4.5	14.5	0	0	0	-5.6	nucleotide metabolism.degradation	inosine-uridine preferring nucleoside hydrolase family protein  similar to inosine-uridine preferring nucleoside hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G18890.1); similar to putative inosine-uridine preferring nucleoside hydrolase [Oryza
MSGI1_26979	NODE_8606_length_402_cov_32.146767	2	2.7	31.4	36	0	0	-4	-3.7	not assigned.unknown	not assigned.unknown
MSGI1_63941	NODE_8608_length_197_cov_11.116752	3.3	1	22	0.2	0	-6.8	-2.7	0	nucleotide metabolism.degradation	cytidine/deoxycytidylate deaminase family protein  similar to cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana] (TAIR:AT3G05300.1); similar to deoxycytidine deaminase [Brassica oleracea] (GB:AAL67435.1); contains InterPro domain CM
MSGI1_50820	NODE_8615_length_242_cov_16.020660	1.2	0.4	18.4	19	0	0	-3.9	-5.6	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2A.4 (HTA12) [Arabidopsis Thaliana] (GB:Q9LZ46); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT5G59870.1); similar to Histone H2A (GB:Q9M531); contains InterPro domain Histone-fold;"
MSGI1_118551	NODE_8622_length_61_cov_61.049179	142.9	161.6	42.7	75	0	0	1.7	1.1	not assigned.unknown	not assigned.unknown
MSGI1_116390	NODE_86232_length_75_cov_19.706667	18.1	37.6	17.9	14	0	0	0	1.4	secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL	"4CL1 (4-COUMARATE:COA LIGASE 1); 4-coumarate-CoA ligase encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate.  The catalytic e"
MSGI1_76974	NODE_86234_length_167_cov_5.017964	2.1	4	22.2	2.9	0	-2.9	-3.4	0	secondary metabolism.phenylpropanoids	transferase family protein  similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT2G39980.1); similar to AER [Nicotiana tabacum] (GB:AAM73656.1); contains InterPro domain Transferase; (InterPro:IPR003480)
MSGI1_104238	NODE_86254_length_128_cov_13.171875	2.3	13.3	0	0.8	0	0	0	4.1	not assigned.unknown	not assigned.unknown
MSGI1_96607	NODE_86271_length_137_cov_4.722628	4.8	16.9	1.7	0.3	0	0	0	5.8	not assigned.unknown	not assigned.unknown
MSGI1_67385	NODE_86275_length_188_cov_26.207447	12.5	24.4	37.2	41.4	0	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_88484	NODE_86300_length_148_cov_2.810811	0.3	3	15.8	3.8	0	0	-5.7	0	not assigned.unknown	not assigned.unknown
MSGI1_104234	NODE_86368_length_128_cov_4.335938	4.1	4.4	31.6	13.8	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_112385	NODE_86389_length_110_cov_11.763637	1.9	17.1	7.7	11.5	3.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_79112	NODE_86429_length_163_cov_6.220859	10.5	8.2	34.7	22.2	0	0	-1.7	0	transport.ABC transporters and multidrug resistance systems	"CER5 (ECERIFERUM 5); ATPase, coupled to transmembrane movement of substances Encodes an ABC transporter involved in cuticular wax biosynthesis. Lines carrying recessive mutations in this locus have weakly glaucous stem surface, and relative elevated seco"
MSGI1_85776	NODE_86549_length_152_cov_4.013158	2.2	3.3	22.1	1.4	0	-4	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_110115	NODE_86588_length_122_cov_2.622951	6.6	6.2	31.3	6.3	0	-2.3	-2.2	0	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.zeaxanthin epoxidase	ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase Encodes a single copy zeaxanthin epoxidase gene that functions in first step of the biosynthesis of the abiotic stress hormone abscisic acid (ABA). Mutants in this gene are unable to express female sterility i
MSGI1_102430	NODE_86627_length_130_cov_4.284616	0.5	5	20.1	6.8	0	0	-5.3	0	transport.misc	"ALF5 (ABERRANT LATERAL ROOT FORMATION 5); antiporter/ transporter Member of the multidrug and toxic compound extrusion (MATE) family, protects roots from inhibitory compounds. similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT3G23550.1"
MSGI1_76973	NODE_86627_length_167_cov_8.904192	10.1	12	0.4	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_62485	NODE_8669_length_201_cov_16.940298	8.8	42.6	21.1	39.6	2.3	0	0	0	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G09970.1); similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine ki"
MSGI1_62139	NODE_8673_length_202_cov_107.519798	72.4	51.5	22.7	62.5	0	1.5	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_82646	NODE_86743_length_157_cov_3.178344	0.7	4	20.1	1.4	0	-3.8	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_20935	NODE_8680_length_485_cov_59.406185	44	62.4	56.1	22.8	0	-1.3	0	1.5	not assigned.unknown	not assigned.unknown
MSGI1_61113	NODE_86803_length_205_cov_3.668293	4.5	2.3	1.8	14.1	0	3	0	0	misc.UDP glucosyl and glucoronyl transferases	"UGT73B1 (UDP-glucosyl transferase 73B1); UDP-glycosyltransferase/ abscisic acid glucosyltransferase  similar to UGT73B2, UDP-glucosyltransferase/ UDP-glycosyltransferase/ flavonol 3-O-glucosyltransferase [Arabidopsis thaliana] (TAIR:AT4G34135.1); similar"
MSGI1_118516	NODE_86804_length_61_cov_11.524590	20.7	5.2	0	0	0	0	5.4	0	not assigned.unknown	not assigned.unknown
MSGI1_118102	NODE_8681_length_62_cov_61.516129	34	51.5	16.6	7.8	0	0	0	2.7	not assigned.unknown	not assigned.unknown
MSGI1_56804	NODE_86811_length_219_cov_51.196346	17.3	26.7	45.4	24.3	0	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_118513	NODE_86822_length_61_cov_2.983607	1.3	2.9	16.4	4.9	0	0	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_118512	NODE_8684_length_61_cov_98.377052	37.5	13.1	19.1	23.5	-1.5	0	0	0	"RNA.regulation of transcription.HSF,Heat-shock transcription factor family"	LIL3:1; transcription factor Encodes Lil3:1 (light-harvesting-like) protein.  Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.  A
MSGI1_69026	NODE_86864_length_184_cov_2.543478	1.3	1.5	37.8	1	0	-5.2	-4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_97325	NODE_86881_length_136_cov_4.147059	4.3	10.8	0.5	0.3	0	0	0	5.2	transport.ABC transporters and multidrug resistance systems	"ABC transporter family protein  Identical to Multidrug resistance protein 13 (P-glycoprotein 15) (MDR13) [Arabidopsis Thaliana] (GB:Q9LHD1); similar to PGP18 (P-GLYCOPROTEIN 18), ATPase, coupled to transmembrane movement of substances [Arabidopsis thalia"
MSGI1_98156	NODE_8692_length_135_cov_11.777778	0	0	11.6	9.7	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_38814	NODE_8697_length_301_cov_117.136215	44.1	53.2	10.6	16.3	0	0	2.1	1.7	not assigned.unknown	not assigned.unknown
MSGI1_73091	NODE_8698_length_175_cov_85.337143	3.2	8.1	98.5	2.8	0	-5.1	-4.9	0	"metal handling.binding, chelation and storage"	"ATFER1 (ferretin 1); ferric iron binding Encodes  a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Identical to Ferritin-1, chloroplast"
MSGI1_39380	NODE_8698_length_298_cov_9.892617	2.4	0.1	8	26	0	0	0	-8	secondary metabolism.flavonoids.flavonols	"UGT73C6 (UDP-glucosyl transferase 73C6); UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups The At2g36790 gene encodes a UDP-glucose:flavonol-3-O-glycoside-7-O-glucosyltransferase (UGT73C6)attaching a glucosyl res"
MSGI1_45295	NODE_8702_length_267_cov_8.041199	2.4	4.1	20	15.7	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_98155	NODE_8705_length_135_cov_83.133331	34.1	84.4	22.8	97.2	1.3	2.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_109102	NODE_87057_length_123_cov_4.333333	3.2	3.9	11.6	0.5	0	-4.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_4140	NODE_8711_length_1154_cov_42.679375	22	20.7	65.6	24.1	0	-1.4	-1.6	0	protein.degradation.aspartate protease	aspartyl protease family protein  similar to pepsin A [Arabidopsis thaliana] (TAIR:AT1G62290.2); similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT4G04460.1); similar to aspartic protease (GB:AAB03108.1); similar to Aspartic prot
MSGI1_27820	NODE_8713_length_392_cov_49.321430	44.1	1.9	13.5	0.6	-4.5	-4.5	1.7	0	cell wall.pectin*esterases.misc	pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT5G51490.1); similar to pectinesterase (EC 3.1.1.11) PECS-c2 - sweet orange (GB:T10494); similar to Pectinesterase-2 precursor (Pectin methylesterase) (
MSGI1_118481	NODE_8714_length_61_cov_47.098362	21.3	1.3	11.6	0.4	-4	-4.9	0	0	cell wall.pectin*esterases.misc	"pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT1G23200.1); similar to pectinesterase (EC 3.1.1.11) PECS-c2 - sweet orange (GB:T10494); contains InterPro domain Virulence factor, pectin lyase fold; ("
MSGI1_107088	NODE_87140_length_125_cov_7.272000	9.2	11.4	2.6	0.5	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_60136	NODE_87172_length_208_cov_5.399038	4.3	6	24.5	8.2	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_118477	NODE_8718_length_61_cov_70.688522	44.9	47.5	0.4	0.4	0	0	6.8	6.9	not assigned.unknown	not assigned.unknown
MSGI1_100676	NODE_87194_length_132_cov_3.340909	3.6	15.5	0	0	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_8013	NODE_8721_length_856_cov_11.001168	15.8	1.4	6.4	4.8	-3.5	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_8013	NODE_8721_length_856_cov_11.001168	15.8	1.4	6.4	4.8	-3.5	0	0	0	secondary metabolism.flavonoids.anthocyanins	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G11180.1); similar to 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABE94015.1); contains InterPro domain"
MSGI1_69461	NODE_87287_length_183_cov_3.945355	2.2	1.9	26.4	2.7	0	-3.3	-3.6	0	cell.organisation	"dynein light chain, putative  similar to dynein light chain, putative [Arabidopsis thaliana] (TAIR:AT3G16120.1); similar to Os02g0269200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046516.1); similar to Dynein light chain, type 1 [Medicago truncat"
MSGI1_25989	NODE_8732_length_414_cov_30.637682	19.5	51.7	37.6	23.4	1.4	0	0	0	secondary metabolism.phenylpropanoids	"O-diphenol-O-methyl transferase, putative  similar to ATOMT1 (O-METHYLTRANSFERASE 1) [Arabidopsis thaliana] (TAIR:AT5G54160.1); similar to S-adenosyl-L-methionine: beta-alanine N-methyltransferase [Limonium latifolium] (GB:AAP03058.1); contains InterPro"
MSGI1_25989	NODE_8732_length_414_cov_30.637682	19.5	51.7	37.6	23.4	1.4	0	0	0	misc.O- methyl transferases	"O-diphenol-O-methyl transferase, putative  similar to ATOMT1 (O-METHYLTRANSFERASE 1) [Arabidopsis thaliana] (TAIR:AT5G54160.1); similar to S-adenosyl-L-methionine: beta-alanine N-methyltransferase [Limonium latifolium] (GB:AAP03058.1); contains InterPro"
MSGI1_5595	NODE_8735_length_1003_cov_49.921238	36.9	14.9	67.6	11.4	0	-2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_98148	NODE_87454_length_135_cov_3.555556	2.2	5.6	17.8	6.9	0	0	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_50120	NODE_8746_length_245_cov_15.575510	0	0	27.1	40.4	0	0	-5.8	-6.3	signalling.G-proteins	"ARAC11/AtROP1/ROP1/ROP1AT (rho-related protein from plants 1); GTP binding / GTPase/ protein binding Pollen-specific Rop GTPase, member of the Rho family of small GTP binding proteins, interacts with RIC3 and RIC4 to control tip growth in pollen tubes. I"
MSGI1_118458	NODE_87482_length_61_cov_4.606557	4.8	20.5	0	0	0	0	0	5.4	protein.degradation	DELTA-VPE (delta vacuolar processing enzyme); cysteine-type endopeptidase Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds.  Mutants display abnormal seed coat develo
MSGI1_57385	NODE_875_length_217_cov_73.783409	82.9	110.5	0.2	0	0	0	8.7	7.8	not assigned.unknown	not assigned.unknown
MSGI1_33141	NODE_8750_length_341_cov_75.076248	40.8	39.9	8.1	15.4	0	0	2.3	1.4	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G68400.1); similar to putative receptor kinase [Malus x domestica] (GB:ABA82081.1); similar"
MSGI1_33141	NODE_8750_length_341_cov_75.076248	40.8	39.9	8.1	15.4	0	0	2.3	1.4	signalling.receptor kinases.leucine rich repeat III	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G68400.1); similar to putative receptor kinase [Malus x domestica] (GB:ABA82081.1); similar"
MSGI1_79102	NODE_8753_length_163_cov_52.190186	40.5	23.2	0	0	0	0	6.3	5.5	protein.synthesis.misc ribososomal protein	60S ribosomal protein L10A (RPL10aA)  Identical to 60S ribosomal protein L10a-1 (RPL10AA) [Arabidopsis Thaliana] (GB:Q8VZB9;GB:Q9SJF4); similar to 60S ribosomal protein L10A (RPL10aB) [Arabidopsis thaliana] (TAIR:AT2G27530.2); similar to Os02g0321900 [Ory
MSGI1_76964	NODE_87558_length_167_cov_4.071856	4.8	4.5	21.8	3.5	0	-2.6	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_83893	NODE_87568_length_155_cov_4.741935	22.3	4.1	8.1	5.3	-2.4	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_83893	NODE_87568_length_155_cov_4.741935	22.3	4.1	8.1	5.3	-2.4	0	0	0	transport.Major Intrinsic Proteins.unspecified	NIP4;2/NLM5 (NOD26-LIKE INTRINSIC PROTEIN 4;2); water channel  Identical to Probable aquaporin NIP4.2 (NOD26-like intrinsic protein 4.2) (Nodulin- 26-like major intrinsic protein 5) (AtNLM5) (Protein NLM5) (NodLikeMip5) (NIP4.2) [Arabidopsis Thaliana] (G
MSGI1_118451	NODE_8758_length_61_cov_36.278690	25.2	38.3	81.4	29.2	0	-1.5	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_118449	NODE_87619_length_61_cov_9.409836	5.6	5	24.7	12.4	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_93470	NODE_8762_length_141_cov_5.560284	30.9	5.9	15.9	8.2	-2.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_102412	NODE_87649_length_130_cov_3.846154	4.3	2.4	34.8	4.5	0	-3	-3	0	nucleotide metabolism.synthesis.pyrimidine.CTP synthetase	"CTP synthase, putative / UTP--ammonia ligase, putative  similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT2G34890.1); similar to EMB2742 (EMBRYO DEFECTIVE 2742), CTP synthase [Arabidopsis thaliana] (TAIR:AT3"
MSGI1_118445	NODE_87670_length_61_cov_13.655738	31.5	1.8	14	1.6	-4.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_14055	NODE_8769_length_628_cov_13.842357	15.4	1.9	6.5	6.7	-3	0	0	0	secondary metabolism.flavonoids.dihydroflavonols.flavonoid 3'-monooxygenase	TT7 (TRANSPARENT TESTA 7); flavonoid 3'-monooxygenase/ oxygen binding Required for flavonoid 3' hydroxylase activity. Identical to Flavonoid 3'-monooxygenase (EC 1.14.13.21) (Flavonoid 3'-hydroxylase) (AtF3'H) (Cytochrome P450 75B1) (TRANSPARENT TESTA 7
MSGI1_7355	NODE_8770_length_891_cov_11.634119	17.8	0.5	2.6	0.2	-5.2	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_20147	NODE_8774_length_501_cov_67.319359	82	176.8	124.6	150.5	1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_92731	NODE_8777_length_142_cov_22.316902	0	0	43.1	46	0	0	-6.4	-6.5	stress.abiotic.heat	"heat shock protein 70, putative / HSP70, putative  similar to HSP91 (Heat shock protein 91) [Arabidopsis thaliana] (TAIR:AT1G79930.2); similar to ATP binding [Arabidopsis thaliana] (TAIR:AT1G11660.2); similar to 97 kDa heat shock protein (Heat shock prot"
MSGI1_115259	NODE_8777_length_85_cov_9.070588	0	0	3.7	13.8	0	0	0	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_98949	NODE_87772_length_134_cov_27.440298	11.2	7.9	0.2	0	0	0	5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_2499	NODE_8778_length_1433_cov_25.710398	18.2	45.9	30.8	29.8	1.3	0	0	0	protein.degradation.ubiquitin.E2	"PHO2/UBC24 (PHOSPHATE 2); ubiquitin-protein ligase Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. similar to UBC23 (ubiquitin-conjugating enzyme"
MSGI1_28377	NODE_8781_length_386_cov_10.196891	6.1	8.8	30.7	4.5	0	-2.8	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_52556	NODE_8783_length_235_cov_45.961700	33.1	33.7	9.5	12.7	0	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_118420	NODE_87916_length_61_cov_10.590164	1.5	6.7	20.3	20.6	0	0	-3.8	0	"misc.oxidases - copper, flavone etc."	"copper amine oxidase, putative  similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G43670.1); similar to peroxisomal copper-containing amine oxidase [Glycine max] (GB:AAD40979.1); similar to Copper amine oxidase [Medicago truncatul"
MSGI1_118417	NODE_87972_length_61_cov_3.000000	0.6	5.9	21.9	7.8	0	0	-5.2	0	RNA.regulation of transcription.GRAS transcription factor family	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_118417	NODE_87972_length_61_cov_3.000000	0.6	5.9	21.9	7.8	0	0	-5.2	0	development.unspecified	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_73088	NODE_8801_length_175_cov_9.702857	3.3	7.4	51.3	20.9	0	-1.3	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_118412	NODE_8803_length_61_cov_38.262295	23.3	5.4	18.4	25.5	-2.1	0	0	-2.2	redox.peroxiredoxin	"2-cys peroxiredoxin, chloroplast, putative  similar to 2-cys peroxiredoxin, chloroplast (BAS1) [Arabidopsis thaliana] (TAIR:AT3G11630.1); similar to 2-Cys peroxiredoxin [Brassica napus] (GB:AAG30570.1); contains InterPro domain Thioredoxin-like fold; (In"
MSGI1_79725	NODE_8807_length_162_cov_16.950617	7.2	19.4	27.9	11	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_41535	NODE_8807_length_286_cov_18.048950	20	9.3	32.6	6.2	0	-2.4	0	0	signalling.in sugar and nutrient physiology	"photoassimilate-responsive protein-related  similar to photoassimilate-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT5G52390.1); similar to NtEIG-E80 [Nicotiana tabacum] (GB:BAB16427.1); contains InterPro domain PAR1; (InterPro:IPR009489)"
MSGI1_75476	NODE_88129_length_170_cov_5.423530	6.1	2.8	25.7	0.9	0	-4.8	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_72183	NODE_8813_length_177_cov_72.084747	2.5	3.3	143.7	1.7	0	-6.4	-5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_54688	NODE_8813_length_227_cov_17.929516	3.9	20.7	34.9	26.3	2.4	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_113469	NODE_88166_length_102_cov_6.411765	4.9	21	0	0	0	0	0	5.4	not assigned.unknown	not assigned.unknown
MSGI1_88467	NODE_88176_length_148_cov_15.364865	15	17.9	58.8	22.8	0	-1.4	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_60768	NODE_88177_length_206_cov_27.995146	31.5	27.1	8.5	10.1	0	0	1.9	0	protein.synthesis.initiation	"EIF4B1 (eukaryotic translation initiation factor 4B1) member of eIF4B - eukaryotic initiation factor 4B similar to eukaryotic translation initiation factor, putative (EIF4B5) [Arabidopsis thaliana] (TAIR:AT1G13020.1); similar to Os02g0595800 [Oryza sativ"
MSGI1_56559	NODE_8820_length_220_cov_8.763637	5.7	6.7	29.4	0.9	0	-5	-2.4	0	"RNA.regulation of transcription.HSF,Heat-shock transcription factor family"	AT-HSFC1 (Arabidopsis thaliana heat shock transcription factor C1); DNA binding / transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor C-1 (AtHsfC1) (HSFC1) [Arabidopsis Thaliana] (GB:
MSGI1_56559	NODE_8820_length_220_cov_8.763637	5.7	6.7	29.4	0.9	0	-5	-2.4	0	stress.abiotic.heat	AT-HSFC1 (Arabidopsis thaliana heat shock transcription factor C1); DNA binding / transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor C-1 (AtHsfC1) (HSFC1) [Arabidopsis Thaliana] (GB:
MSGI1_113248	NODE_8822_length_103_cov_43.009708	38.4	61.2	4.2	8.9	0	0	3.2	2.8	not assigned.unknown	not assigned.unknown
MSGI1_111042	NODE_88243_length_121_cov_12.173553	11.2	10.5	0.3	0	0	0	5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_89140	NODE_8825_length_147_cov_6.993197	1.7	2.3	17.3	11.6	0	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_111407	NODE_8827_length_118_cov_132.474579	117.4	100.7	37.9	110	0	1.5	1.6	0	RNA.regulation of transcription.unclassified	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT1G25510.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japoni
MSGI1_111407	NODE_8827_length_118_cov_132.474579	117.4	100.7	37.9	110	0	1.5	1.6	0	cell wall	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT1G25510.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japoni
MSGI1_72640	NODE_8827_length_176_cov_126.477272	227.2	98.4	80.7	55.7	-1.2	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_110069	NODE_8829_length_122_cov_152.991806	58.7	35.3	20.4	50.9	0	1.3	1.5	0	cell.organisation	"TUB7 (tubulin beta-7 chain) Encodes a beta-tubulin that is expressed in leaves, roots and flowers. Identical to Tubulin beta-7 chain (Beta-7 tubulin) (TUBB7) [Arabidopsis Thaliana] (GB:P29515); similar to TUB3 (Tubulin beta-3), structural molecule [Arabi"
MSGI1_36375	NODE_8830_length_317_cov_34.725552	134.2	72.7	59.4	67.2	0	0	1.2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L13A (RPL13aD)  Identical to 60S ribosomal protein L13a-4 (RPL13AD) [Arabidopsis Thaliana] (GB:Q9FKC0;GB:Q42084); similar to 60S ribosomal protein L13A (RPL13aA) [Arabidopsis thaliana] (TAIR:AT3G07110.1); similar to 60S ribosomal pr
MSGI1_12766	NODE_8831_length_665_cov_10.712782	8.5	23.3	35	21.7	0	0	-2	0	"misc.oxidases - copper, flavone etc."	"copper amine oxidase, putative  similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G43670.1); similar to peroxisomal copper-containing amine oxidase [Glycine max] (GB:AAD40979.1); similar to Copper amine oxidase [Medicago truncatul"
MSGI1_39042	NODE_8832_length_300_cov_11.086667	13.7	28.4	9.3	6.4	0	0	0	2.1	metal handling	"selenium-binding protein, putative  Identical to Putative selenium-binding protein [Arabidopsis Thaliana] (GB:O23264); similar to EDA38 (embryo sac development arrest 38), selenium binding [Arabidopsis thaliana] (TAIR:AT4G14040.1); similar to selenium-bi"
MSGI1_10543	NODE_884_length_740_cov_16.935135	14.1	39.2	9.2	32.1	1.5	1.8	0	0	cell wall.cellulose synthesis.COBRA	"COBL4/IRX6 (COBRA-LIKE4); hydrolase, hydrolyzing O-glycosyl compounds / polysaccharide binding Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduc"
MSGI1_65384	NODE_8841_length_193_cov_18.336788	2.5	7.7	32.8	17.1	0	0	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_72181	NODE_8846_length_177_cov_10.112994	0	0	12.3	18.2	0	0	-4.6	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_24834	NODE_8849_length_429_cov_154.426575	154.1	103.1	51.4	105.9	0	1	1.6	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S29 (RPS29C)  Identical to 40S ribosomal protein S29 (RPS29C) [Arabidopsis Thaliana] (GB:Q680P8;GB:Q9LDT9); similar to 40S ribosomal protein S29 (RPS29B) [Arabidopsis thaliana] (TAIR:AT3G44010.1); similar to 40S ribosomal protein S29
MSGI1_88462	NODE_88518_length_148_cov_3.648649	5.4	0.1	25.3	1	0	-4.7	-2.2	0	N-metabolism.N-degradation.glutamate dehydrogenase	"glutamate dehydrogenase, putative  Identical to Probable glutamate dehydrogenase 3 (EC 1.4.1.3) (GDH 3) (GSH3) [Arabidopsis Thaliana] (GB:Q9S7A0); similar to GDH2 (GLUTAMATE DEHYDROGENASE 2), oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G07440.1); simi"
MSGI1_115469	NODE_8852_length_83_cov_33.180721	0	0	49.4	15.7	0	-1.7	-6.6	-5	not assigned.unknown	not assigned.unknown
MSGI1_46807	NODE_8854_length_260_cov_18.565384	0	0	19.6	23.1	0	0	-5.3	-5.5	protein.degradation.ubiquitin.E3.SCF.SKP	ASK2 (ARABIDOPSIS SKP1-LIKE 2); ubiquitin-protein ligase Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis. Identical to SKP1-like protein 1B (SKP1-like 2) (UFO-binding protein 2) (SKP
MSGI1_110062	NODE_88611_length_122_cov_13.147541	13.8	36.9	15.1	22.5	1.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_118366	NODE_88616_length_61_cov_9.639344	4.3	11.1	0.4	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_112471	NODE_8870_length_109_cov_10.458715	10.1	19.8	0	0.9	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_71226	NODE_8871_length_179_cov_40.346367	21.6	35.3	0.2	0.4	0	0	6.8	6.5	not assigned.unknown	not assigned.unknown
MSGI1_64666	NODE_88716_length_195_cov_12.589744	10.4	16.2	3.8	2	0	0	0	3	signalling.in sugar and nutrient physiology	"photoassimilate-responsive protein-related  similar to photoassimilate-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT5G52390.1); similar to NtEIG-E80 [Nicotiana tabacum] (GB:BAB16427.1); contains InterPro domain PAR1; (InterPro:IPR009489)"
MSGI1_63931	NODE_8872_length_197_cov_19.873096	24.3	9.7	1.3	3.1	0	0	4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_77468	NODE_8876_length_166_cov_52.740963	27.1	40.7	97.7	87.6	0	0	-1.9	-1.1	protein.degradation.aspartate protease	aspartyl protease family protein  similar to pepsin A [Arabidopsis thaliana] (TAIR:AT1G62290.2); similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT4G04460.1); similar to aspartic protease (GB:AAB03108.1); similar to Aspartic prot
MSGI1_43048	NODE_8878_length_278_cov_9.794964	2.3	2.8	5.9	23.5	0	2	0	-3.1	misc.UDP glucosyl and glucoronyl transferases	UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G51210.1); similar to putative glycosyltransferase [Solanum aculeatissimum] (GB:BAD89044.1); cont
MSGI1_115924	NODE_8878_length_79_cov_24.215189	17.7	8.5	0.3	4.3	0	0	5.9	0	protein.folding	"chaperonin, putative  Identical to Chaperonin CPN60-like 1, mitochondrial precursor (HSP60-like 1) [Arabidopsis Thaliana] (GB:Q8L7B5;GB:O49314); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G13860.1); similar to HSP60 (Heat shock prote"
MSGI1_115924	NODE_8878_length_79_cov_24.215189	17.7	8.5	0.3	4.3	0	0	5.9	0	stress.abiotic.heat	"chaperonin, putative  Identical to Chaperonin CPN60-like 1, mitochondrial precursor (HSP60-like 1) [Arabidopsis Thaliana] (GB:Q8L7B5;GB:O49314); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G13860.1); similar to HSP60 (Heat shock prote"
MSGI1_22556	NODE_888_length_462_cov_40.549782	30.5	9	39.6	21.7	-1.8	0	0	0	misc.plastocyanin-like	plastocyanin-like domain-containing protein  similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G07475.1); similar to blue copper-binding protein homolog [Triticum aestivum] (GB:AAD10251.1); contains InterPro domain Cup
MSGI1_22556	NODE_888_length_462_cov_40.549782	30.5	9	39.6	21.7	-1.8	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_84511	NODE_88805_length_154_cov_4.487013	3.6	5.3	27.4	4.7	0	-2.5	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_27224	NODE_8882_length_399_cov_11.208020	6.8	0.1	27.6	0.1	0	-8.1	-2	0	secondary metabolism.wax	"CER1 (ECERIFERUM 1) Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also l"
MSGI1_59503	NODE_8885_length_210_cov_5.490476	6.7	1.4	5.7	14	0	0	0	-3.3	not assigned.unknown	not assigned.unknown
MSGI1_100648	NODE_88855_length_132_cov_21.439394	12.1	11.8	60.4	14.3	0	-2.1	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_118349	NODE_88855_length_61_cov_7.557377	12.3	4.1	0	0	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_58929	NODE_8888_length_212_cov_21.867924	12.1	9.6	0	0	0	0	4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_59502	NODE_889_length_210_cov_64.814285	22.8	44.9	0.9	2.6	0	0	4.7	4.1	not assigned.unknown	not assigned.unknown
MSGI1_50580	NODE_88964_length_243_cov_4.534979	1.4	5	15.6	1.2	0	-3.7	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_92720	NODE_88977_length_142_cov_17.880281	25.8	19.6	134.8	4.4	0	-4.9	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_13613	NODE_8899_length_641_cov_25.260530	15.6	12.5	0.2	0.4	0	0	6.3	5	not assigned.unknown	not assigned.unknown
MSGI1_102390	NODE_89017_length_130_cov_7.723077	8.9	2.9	29.5	3.4	0	-3.1	0	0	cell wall	"peroxidase, putative  Identical to Peroxidase 47 precursor (EC 1.11.1.7) (Atperox P47) (ATP32) (PER47) [Arabidopsis Thaliana] (GB:Q9SZB9); similar to peroxidase [Arabidopsis thaliana] (TAIR:AT5G51890.1); similar to TPA: class III peroxidase 117 precursor"
MSGI1_102390	NODE_89017_length_130_cov_7.723077	8.9	2.9	29.5	3.4	0	-3.1	0	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 47 precursor (EC 1.11.1.7) (Atperox P47) (ATP32) (PER47) [Arabidopsis Thaliana] (GB:Q9SZB9); similar to peroxidase [Arabidopsis thaliana] (TAIR:AT5G51890.1); similar to TPA: class III peroxidase 117 precursor"
MSGI1_33664	NODE_8904_length_337_cov_167.795258	108.1	111.6	0.4	0	0	0	8.1	7.8	cell wall	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_33664	NODE_8904_length_337_cov_167.795258	108.1	111.6	0.4	0	0	0	8.1	7.8	protein.degradation.subtilases	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_118337	NODE_8905_length_61_cov_35.918034	0	0	39.9	31.3	0	0	-6.3	-6	not assigned.unknown	not assigned.unknown
MSGI1_63550	NODE_89145_length_198_cov_4.797980	6.6	6	24.5	2.9	0	-3.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_53342	NODE_8919_length_232_cov_7.366379	4.3	2.6	9.1	18.5	0	0	0	-2.8	cell wall.modification	"ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Ide"
MSGI1_38196	NODE_8921_length_305_cov_30.390163	17.5	29.3	73.1	34.8	0	-1.1	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_62859	NODE_8928_length_200_cov_41.485001	79.9	92.1	42.4	82.3	0	1	0	0	protein.degradation	cytosol aminopeptidase  Identical to Leucine aminopeptidase 1 (EC 3.4.11.1) (LAP 1) (Leucyl aminopeptidase 1) (Proline aminopeptidase 1) (EC 3.4.11.5) (Prolyl aminopeptidase 1) (PM25) [Arabidopsis Thaliana] (GB:P30184); similar to cytosol aminopeptidase
MSGI1_98934	NODE_8933_length_134_cov_139.888062	30.6	11.8	6	5.1	0	0	2.4	0	DNA.repair	DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); protein binding Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. Identical to DNA-damage-repair/toleration protein DRT100 precursor (DRT100) [Arabidopsis Thaliana] (GB:Q00874;G
MSGI1_82633	NODE_8934_length_157_cov_152.643311	88.7	102.9	38.1	43.1	0	0	1.2	1.3	secondary metabolism.phenylpropanoids.lignin biosynthesis.C3H	"CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3); p-coumarate 3-hydroxylase encodes coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase. Involved in lignin biosynthesis and flavonoid biosynthesis.  Also affects the biosynthesis"
MSGI1_82633	NODE_8934_length_157_cov_152.643311	88.7	102.9	38.1	43.1	0	0	1.2	1.3	misc.cytochrome P450	"CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3); p-coumarate 3-hydroxylase encodes coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase. Involved in lignin biosynthesis and flavonoid biosynthesis.  Also affects the biosynthesis"
MSGI1_118327	NODE_8937_length_61_cov_197.819672	53.2	34.3	20.7	47.8	0	1.2	1.4	0	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L21  Identical to 60S ribosomal protein L21-2 (RPL21F) [Arabidopsis Thaliana] (GB:Q9FDZ9); similar to 60S ribosomal protein L21 (RPL21E) [Arabidopsis thaliana] (TAIR:AT1G57660.1); similar to 60S ribosomal protein L21, putative, expr"
MSGI1_29011	NODE_8950_length_379_cov_10.910290	5	9.9	27.4	0.8	0	-5.1	-2.5	0	DNA.repair	heavy-metal-associated domain-containing protein  similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G23760.1); similar to Unknown (protein for MGC:78286) [Mus musculus] (GB:AAH71252.1); contains InterPro domain He
MSGI1_108004	NODE_8952_length_124_cov_8.088710	10.7	2	0.3	0	0	0	5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_47856	NODE_8953_length_255_cov_34.447060	13.2	1.3	1.5	0.5	-3.3	0	0	0	secondary metabolism.flavonoids.dihydroflavonols	UDP-glucoronosyl/UDP-glucosyl transferase family protein the glycosyltransferase (UGT72B1) is involved in metabolizing xenobiotica (chloroaniline and chlorophenole). Comparison between wild type and knock-out mutant demonstrates the central role of this g
MSGI1_92713	NODE_8961_length_142_cov_10.978873	3.5	7	22.5	4.2	0	-2.4	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_112469	NODE_8965_length_109_cov_71.733948	23.6	27.9	19.2	50.7	0	1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_50975	NODE_8967_length_241_cov_84.029045	52.8	36.2	23.4	38.7	0	0	1.2	0	protein.postranslational modification	"T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative  Identical to T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) [Arabidopsis Thaliana] (GB:O04450); similar to chaperonin, putative [Arabidopsi"
MSGI1_101522	NODE_8969_length_131_cov_12.175572	7.8	32	20.7	3.1	2	-2.7	0	3.4	not assigned.unknown	not assigned.unknown
MSGI1_25832	NODE_8970_length_416_cov_54.576923	79.2	0.9	7.1	1.9	-6.5	0	3.5	0	misc.glutathione S transferases	ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11); glutathione transferase Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Identical to Glutathione S-transferase (EC 2.5.1.18) (GST class-phi
MSGI1_24358	NODE_8974_length_435_cov_28.666666	11.6	3.9	51.5	7.8	0	-2.7	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_45942	NODE_8982_length_264_cov_18.575758	22.2	18.7	0.6	0.2	0	0	5.2	6.5	not assigned.unknown	not assigned.unknown
MSGI1_62479	NODE_89838_length_201_cov_16.746269	37.1	11.2	8.7	6.9	-1.7	0	2.1	0	DNA.synthesis/chromatin structure.histone	"histone H2B, putative  Identical to Putative histone H2B.9 (HTB10) [Arabidopsis Thaliana] (GB:Q9LZ45); similar to histone H2B, putative [Arabidopsis thaliana] (TAIR:AT3G53650.1); similar to Probable histone H2B.3 (GB:Q1SU99); similar to Probable histone"
MSGI1_73085	NODE_8984_length_175_cov_139.794281	86.8	6.5	23.5	1.7	-3.7	-3.8	1.9	0	stress.biotic	disease resistance-responsive family protein  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22900.1); similar to dirigent-like protein pDIR9 [Picea engelmannii x Picea glauca] (GB:ABD52120.1); contains InterPro domain Plant disease resistanc
MSGI1_29573	NODE_8987_length_373_cov_19.479893	19	22.3	42.4	6	0	-2.8	0	0	stress.biotic	glycosyl hydrolase family 81 protein  similar to glycosyl hydrolase family 81 protein [Arabidopsis thaliana] (TAIR:AT1G18310.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96863.1); similar to beta-glucan-binding protein 4 [Medicago truncatu
MSGI1_118319	NODE_899_length_61_cov_33.606556	19	10.4	0.4	0	0	0	5.6	0	amino acid metabolism.degradation.aspartate family.asparagine.L-asparaginase	"L-asparaginase, putative / L-asparagine amidohydrolase, putative  Identical to Probable L-asparaginase 2 precursor (EC 3.5.1.1) (L-asparagine amidohydrolase 2) [Contains: L-asparaginase 2 subunit alpha; L- asparaginase 2 subunit beta] [Arabidopsis Thalia"
MSGI1_107045	NODE_8995_length_125_cov_200.240005	162.3	58.6	116.1	51.5	-1.5	-1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_16156	NODE_8999_length_574_cov_26.918118	2.2	35.1	0.4	1.7	4	0	0	4.4	not assigned.unknown	not assigned.unknown
MSGI1_38813	NODE_9005_length_301_cov_18.109634	0	0	50.9	63.4	0	0	-6.7	-7	not assigned.unknown	not assigned.unknown
MSGI1_5495	NODE_9008_length_1011_cov_27.046488	33.3	26.9	22.2	71.4	0	1.7	0	-1.4	secondary metabolism.isoprenoids	"beta-amyrin synthase, putative  similar to LUP1 (LUPEOL SYNTHASE 1), lupeol synthase [Arabidopsis thaliana] (TAIR:AT1G78970.1); similar to beta-amyrin synthase, putative [Arabidopsis thaliana] (TAIR:AT1G78950.1); similar to ATLUP2 (Arabidopsis thaliana l"
MSGI1_58609	NODE_9008_length_213_cov_19.488262	0.3	1	23.7	15.5	0	0	-6.3	-4	secondary metabolism.flavonoids.flavonols	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G25310.1); similar to putative ethylene-forming enzyme [Oryza sativa] (GB:AAL79802.1); contains InterPro d"
MSGI1_89132	NODE_9009_length_147_cov_17.802721	5.2	22.3	0.7	8.4	2.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_81427	NODE_9009_length_159_cov_86.490562	84.3	157	123.6	35.8	0	-1.8	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_96571	NODE_90166_length_137_cov_2.905109	28	1.7	2.9	0.3	-4	0	3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_116884	NODE_90214_length_71_cov_9.140845	4.7	6	40.6	39.2	0	0	-3.1	-2.7	not assigned.unknown	not assigned.unknown
MSGI1_111041	NODE_9022_length_121_cov_36.570248	20.6	6	50.7	15.7	0	-1.7	-1.3	0	transport.peptides and oligopeptides	"proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G16180.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32296.1); sim"
MSGI1_118316	NODE_9024_length_61_cov_606.819702	163.9	51.1	245.3	338.9	-1.7	0	0	-2.7	TCA / org. transformation.carbonic anhydrases	"CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding  Identical to Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase) (CA1) [Arabidopsis Thaliana] (GB:P27140;GB:Q8RWW2;GB:Q93VR8); similar to CA2 (BETA CARBONIC A"
MSGI1_53626	NODE_90259_length_231_cov_7.246753	5.8	9.7	25.1	8.1	0	0	-2.1	0	"RNA.regulation of transcription.HSF,Heat-shock transcription factor family"	ATHSFA2 (Arabidopsis thaliana heat shock transcription factor A2); DNA binding / transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor A-2 (AtHsfA2) (HSFA2) [Arabidopsis Thaliana] (GB:O
MSGI1_53626	NODE_90259_length_231_cov_7.246753	5.8	9.7	25.1	8.1	0	0	-2.1	0	stress.abiotic.heat	ATHSFA2 (Arabidopsis thaliana heat shock transcription factor A2); DNA binding / transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor A-2 (AtHsfA2) (HSFA2) [Arabidopsis Thaliana] (GB:O
MSGI1_79713	NODE_9027_length_162_cov_8.049383	6	14.7	29.2	18.2	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_40613	NODE_9028_length_291_cov_40.814434	25.5	9.9	4.5	12	0	0	2.5	0	lipid metabolism.FA synthesis and FA elongation.enoyl ACP reductase	"MOD1 (MOSAIC DEATH 1); enoyl-[acyl-carrier-protein] reductase (NADH)/ oxidoreductase Encodes enoyl-ACP reductase a component of the fatty acid synthase complex.  A reduced function mutation in this gene, mod1, was found in a screen for premature cell dea"
MSGI1_33797	NODE_9036_length_336_cov_15.875000	18.7	33.8	46.4	37.8	0	0	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_13400	NODE_9042_length_647_cov_70.834618	51.2	12	9.6	5.9	-2.1	0	2.4	0	amino acid metabolism.synthesis.aspartate family.methionine.S-adenosylmethionine synthetase	"MAT3 (METHIONINE ADENOSYLTRANSFERASE 3); methionine adenosyltransferase  similar to SAM1 (S-adenosylmethionine synthetase 1), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT1G02500.2); similar to MTO3 (S-adenosylmethionine synthase 3), met"
MSGI1_13400	NODE_9042_length_647_cov_70.834618	51.2	12	9.6	5.9	-2.1	0	2.4	0	"metal handling.binding, chelation and storage"	"MAT3 (METHIONINE ADENOSYLTRANSFERASE 3); methionine adenosyltransferase  similar to SAM1 (S-adenosylmethionine synthetase 1), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT1G02500.2); similar to MTO3 (S-adenosylmethionine synthase 3), met"
MSGI1_80854	NODE_9046_length_160_cov_15.606250	15.9	13.5	2.2	2.7	0	0	2.9	0	cell wall.pectin synthesis	"QUA1 (QUASIMODO1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Quasimodo1, encodes a glycosyltransferase, involved in homogalacturonan biosynthesis; mutant show"
MSGI1_115161	NODE_907_length_86_cov_92.406975	64.8	25.7	6.6	10.3	-1.3	0	3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_83885	NODE_9070_length_155_cov_13.264516	0	0	15.1	15.3	0	0	-4.9	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_20617	NODE_9070_length_491_cov_28.389002	94.6	57.1	35.9	66.4	0	0	1.4	0	cell. vesicle transport	"coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16200.1); similar to Adaptin N terminal re (GB:ABE87941.1); similar to PREDICTED: similar to coatomer"
MSGI1_40792	NODE_9082_length_290_cov_24.062069	109.1	50.1	49.1	75.3	-1.1	0	1.2	0	protein.synthesis.misc ribososomal protein	"EMB1080 (EMBRYO DEFECTIVE 1080); structural constituent of ribosome  Identical to 40S ribosomal protein S11-1 (RPS11A) [Arabidopsis Thaliana] (GB:P16181); similar to RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA), structural constituent of ribosome [Arabidopsis"
MSGI1_87110	NODE_90847_length_150_cov_3.746667	3	3.5	18	7.1	0	0	-2.6	0	protein.degradation.ubiquitin.E3.SCF.FBOX	"FKF1 (FLAVIN-BINDING KELCH DOMAIN F BOX PROTEIN); ubiquitin-protein ligase flavin-binding kelch domain F box protein, is clock-controlled, regulates transition to flowering Identical to Adagio protein 3 (Flavin-binding kelch repeat F-box protein 1) (F-bo"
MSGI1_27312	NODE_9086_length_398_cov_11.854271	0	0	6.2	16.2	0	0	0	-5	not assigned.unknown	not assigned.unknown
MSGI1_113114	NODE_9088_length_104_cov_334.192322	269.2	229	0	0.3	0	0	9.1	9.6	not assigned.unknown	not assigned.unknown
MSGI1_79093	NODE_9089_length_163_cov_17.993866	1.1	1	25.2	1.8	0	-3.8	-4.5	0	minor CHO metabolism.raffinose family.raffinose synthases.known	"SIP1 (SEED IMBIBITION 1-LIKE); galactinol-sucrose galactosyltransferase/ hydrolase, hydrolyzing O-glycosyl compounds Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount o"
MSGI1_44823	NODE_9091_length_269_cov_16.197025	17.6	11.1	2.5	2.6	0	0	2.8	0	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase V	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G01330.1); similar to Protein kinase [Medicago truncatula] (GB:ABE93550.1); similar to Os03g0125600 [Oryza sativa (japonica cultivar-group)] (GB:NP_00
MSGI1_44823	NODE_9091_length_269_cov_16.197025	17.6	11.1	2.5	2.6	0	0	2.8	0	cell wall	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G01330.1); similar to Protein kinase [Medicago truncatula] (GB:ABE93550.1); similar to Os03g0125600 [Oryza sativa (japonica cultivar-group)] (GB:NP_00
MSGI1_113906	NODE_9096_length_98_cov_55.744900	55.2	68.6	8.9	7.9	0	0	2.6	3.1	not assigned.unknown	not assigned.unknown
MSGI1_61109	NODE_9100_length_205_cov_8.687805	0.1	0.2	18.2	0.2	0	-6.5	-7.5	0	not assigned.unknown	not assigned.unknown
MSGI1_74024	NODE_91003_length_173_cov_3.942197	0.2	4.3	1.9	798	0	8.7	0	-7.5	not assigned.unknown	not assigned.unknown
MSGI1_109044	NODE_9105_length_123_cov_11.243902	0.6	0.4	11.6	24.2	0	0	-4.3	-5.9	protein.degradation	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G70550.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23340.2); similar to putative carboxyl-terminal proteinase [Gossypium hirsutum] (GB:AAK84952.2); contains InterPro domain
MSGI1_118298	NODE_9105_length_61_cov_7.426229	11.9	19.1	81	28.4	0	-1.5	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_78017	NODE_91067_length_165_cov_4.945455	42	2.5	17.2	0.2	-4.1	-6.4	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_47855	NODE_9113_length_255_cov_11.533334	3.9	2.3	21.6	4.4	0	-2.3	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_14836	NODE_9118_length_608_cov_14.172697	4.3	2.9	14.5	17.5	0	0	0	-2.6	cell wall.modification	"xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 32 precursor (EC 2.4.1.207) (At-XTH32) (XTH-32) (XT"
MSGI1_118293	NODE_91182_length_61_cov_4.803279	2.8	2.7	21.5	9.5	0	0	-2.9	0	lipid metabolism.lipid degradation.beta-oxidation.acyl CoA DH	"ACX4 (ACYL-COA OXIDASE 4); oxidoreductase Encodes a short-chain acyl-CoA oxidase, which catalyzes the first step of peroxisomal fatty acid beta-oxidation during early, post-germinative growth in oilseed species. Null mutants virtually lack short-chain ac"
MSGI1_118292	NODE_9121_length_61_cov_10.540983	8.4	22.1	28.7	30.5	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_44441	NODE_9122_length_271_cov_22.494465	13.2	42.8	65.9	16.7	1.7	-2	-2.3	1.4	not assigned.unknown	not assigned.unknown
MSGI1_65005	NODE_9129_length_194_cov_6.417526	1.6	2.8	20.3	6.7	0	0	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_79707	NODE_9130_length_162_cov_6.475308	0	0	7.9	14	0	0	0	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_10347	NODE_9132_length_748_cov_18.938503	50.2	18.5	31.7	25.7	-1.4	0	0	0	minor CHO metabolism.myo-inositol.inositol phosphatase	"VTC4; 3'(2'),5'-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis similar to inositol monophosphatase family protein [Arabidopsis thaliana] (TAIR:AT1G"
MSGI1_43213	NODE_9134_length_277_cov_8.075812	12.8	20.1	41.2	5.6	0	-2.9	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_107983	NODE_91346_length_124_cov_4.661290	6	5.7	33.3	5.7	0	-2.5	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_36670	NODE_9137_length_315_cov_10.939683	13.8	5.3	0	0	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_79088	NODE_9141_length_163_cov_175.012268	184.6	28.3	10.4	31.8	-2.7	1.6	4.1	0	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit JP650 precursor (Aromatic-rich glycoprotein JP650) (JP650) [Arabidopsis Thaliana] (GB:P92990;GB:O64599;GB:Q8H7B8;GB:Q93ZQ4); simil"
MSGI1_106083	NODE_91448_length_126_cov_3.071429	4.9	3	16.1	0.8	0	-4.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_62477	NODE_9145_length_201_cov_7.333333	0	0	18.7	17.6	0	0	-5.2	-5.1	protein.degradation.ubiquitin	ubiquitin fusion degradation UFD1 family protein  similar to ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana] (TAIR:AT4G38930.2); similar to ubiquitin fusion-degradation protein-like [Solanum tuberosum] (GB:ABB29959.1); contains Int
MSGI1_39753	NODE_9155_length_296_cov_28.976351	15.6	29.8	50.8	32.7	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_79087	NODE_91558_length_163_cov_3.607362	3.5	2.8	31.3	9	0	-1.8	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_49601	NODE_9156_length_247_cov_30.866396	32.9	157	39.9	98.2	2.3	1.3	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_118285	NODE_9157_length_61_cov_31.803278	18.5	71.2	12	37.9	1.9	1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_116782	NODE_9161_length_72_cov_32.472221	25	57.1	0	0	1.2	0	5.6	6.8	not assigned.unknown	not assigned.unknown
MSGI1_27915	NODE_9168_length_391_cov_81.769821	108.2	51.4	1.7	1.8	-1.1	0	6	4.8	protein.synthesis.misc ribososomal protein	60S ribosomal protein L30 (RPL30B)  Identical to 60S ribosomal protein L30-2 (RPL30B) [Arabidopsis Thaliana] (GB:Q8VZ19;GB:Q9SH07); similar to 60S ribosomal protein L30 (RPL30A) [Arabidopsis thaliana] (TAIR:AT1G36240.1); similar to 60S ribosomal protein L
MSGI1_57710	NODE_9203_length_216_cov_11.032408	4.4	12.6	24	15	0	0	-2.4	0	protein.degradation.ubiquitin.E3.RING	zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G09760.1); similar to Os06g0677300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058355.1); similar t
MSGI1_17522	NODE_9211_length_547_cov_49.389397	109.8	64.4	36.3	77.8	0	1.1	1.6	0	protein.synthesis.misc ribososomal protein	"EMB3010 (EMBRYO DEFECTIVE 3010); structural constituent of ribosome  Identical to 40S ribosomal protein S6-2 (RPS6B) [Arabidopsis Thaliana] (GB:P51430;GB:O04670;GB:Q9LX91); similar to RPS6 (RIBOSOMAL PROTEIN S6), structural constituent of ribosome [Arabi"
MSGI1_81425	NODE_9213_length_159_cov_9.666667	0	0	9.5	13.7	0	0	0	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_51781	NODE_9214_length_238_cov_8.016807	10	11.9	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_85742	NODE_92163_length_152_cov_2.690789	49.9	1.5	75.3	0.9	-5.1	-6.4	0	0	major CHO metabolism.degradation.sucrose.invertases.vacuolar	"ATBETAFRUCT4/VAC-INV (VACUOLAR INVERTASE); beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds  similar to beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar [Arabidopsis thaliana] (TAIR:AT1G62660.1); similar to"
MSGI1_83227	NODE_922_length_156_cov_35.448719	0	0.1	296	81.6	0	-1.9	-9.2	-9.7	not assigned.unknown	not assigned.unknown
MSGI1_104167	NODE_9232_length_128_cov_21.882812	5.8	26.2	44.4	11.9	2.2	-1.9	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_58924	NODE_9239_length_212_cov_10.141509	0	0.1	13.2	7.2	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_75952	NODE_9245_length_169_cov_14.017752	3.6	2.9	46.5	3.1	0	-3.9	-3.7	0	fermentation.aldehyde dehydrogenase	ALDH3H1 (ALDEHYDE DEHYDROGENASE 4); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) Encodes a protein similar to the aldehyde dehydrogenase cp-ADH from C.plantagineum. Constitutively expressed at low levels. Identical to Aldehyde dehyd
MSGI1_96555	NODE_9248_length_137_cov_2.474452	2.6	4.2	16.7	2	0	-3.1	0	0	protein.postranslational modification	"protein phosphatase 2C, putative / PP2C, putative  similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT5G27930.2); similar to Protein phosphatase 2C-like [Medicago truncatula] (GB:ABE85677.1); contains InterPro dom"
MSGI1_98114	NODE_9249_length_135_cov_9.014814	0	0	16.6	15.3	0	0	-5.1	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_97280	NODE_9250_length_136_cov_603.426453	474.4	482.5	28.6	24.7	0	0	4.1	4.3	not assigned.unknown	not assigned.unknown
MSGI1_118100	NODE_9250_length_62_cov_14.661290	0	0	20.6	32.3	0	0	-5.4	-6	not assigned.unknown	not assigned.unknown
MSGI1_111040	NODE_9252_length_121_cov_184.429749	132.9	68	36.8	41.3	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_65003	NODE_9253_length_194_cov_10.603093	0.2	0.4	19.8	18.3	0	0	-6.6	-5.5	protein.degradation.ubiquitin.E3.SCF.FBOX	"F-box family protein  similar to F-box family protein-related [Arabidopsis thaliana] (TAIR:AT4G22390.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABD28492.1); contains InterPro d"
MSGI1_38666	NODE_9256_length_302_cov_198.251663	77.9	56	39.3	35.9	0	0	1	0	cell wall.precursor synthesis.GAE	"GAE6 (UDP-D-GLUCURONATE 4-EPIMERASE 6); catalytic UDP-D-glucuronate 4-epimerase similar to GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3), catalytic [Arabidopsis thaliana] (TAIR:AT4G00110.1); similar to GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2), catalytic [Arabidop"
MSGI1_94965	NODE_9260_length_139_cov_59.992805	17.7	22	103	19.1	0	-2.4	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_68186	NODE_9261_length_186_cov_13.252688	14.5	8.4	0	0	0	0	4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_39752	NODE_9264_length_296_cov_18.412163	22.4	12.8	0	0.1	0	0	5.5	7	not assigned.unknown	not assigned.unknown
MSGI1_96553	NODE_9268_length_137_cov_9.087591	0.1	0	61.3	22.3	0	-1.5	-9.3	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_6399	NODE_927_length_946_cov_11.734673	17	0.7	1.2	1	-4.6	0	3.8	0	secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase	"CHS (CHALCONE SYNTHASE); naringenin-chalcone synthase Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids.  Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of"
MSGI1_12011	NODE_9270_length_689_cov_18.313498	25.6	45.2	15.7	13	0	0	0	1.8	stress.biotic	"disease resistance protein (CC-NBS-LRR class), putative  Identical to Probable disease resistance protein At5g66910 [Arabidopsis Thaliana] (GB:Q9FKZ0); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G66"
MSGI1_80849	NODE_9278_length_160_cov_17.674999	15.4	14.8	2	4.3	0	0	2.9	0	glycolysis.glyceraldehyde 3-phosphate dehydrogenase	"GAPCP-1; glyceraldehyde-3-phosphate dehydrogenase  similar to GAPCP-2, glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G16300.1); similar to glyceraldehyde-3-phosphate dehydrogenase [Capsicum annuum] (GB:CAC80377.1); contains Int"
MSGI1_7739	NODE_9279_length_869_cov_121.899887	110.3	27.1	19.5	18.6	-2	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_118247	NODE_9281_length_61_cov_33.344261	5.6	33.1	16.4	2.1	2.6	-3	0	4	not assigned.unknown	not assigned.unknown
MSGI1_74434	NODE_9286_length_172_cov_24.348837	28.1	62.6	13.2	11	1.2	0	0	2.5	not assigned.unknown	not assigned.unknown
MSGI1_86432	NODE_9296_length_151_cov_106.119202	103.9	65.3	137.3	22.5	0	-2.6	0	1.5	cell wall.degradation.mannan-xylose-arabinose-fucose	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT3G52840.1)"
MSGI1_86432	NODE_9296_length_151_cov_106.119202	103.9	65.3	137.3	22.5	0	-2.6	0	1.5	"misc.gluco-, galacto- and mannosidases"	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT3G52840.1)"
MSGI1_98113	NODE_9300_length_135_cov_42.229630	32.7	20	188.6	20.2	0	-3.2	-2.5	0	major CHO metabolism.degradation.starch.starch cleavage	"BMY7/TR-BAMY (beta-amylase 7); beta-amylase  similar to CT-BMY (BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to beta-amylase 1 [Nicotiana langsdorffii x Nicotiana sanderae] (GB:AAY89374.1); similar to putative chloropl"
MSGI1_52552	NODE_9303_length_235_cov_24.476595	26.7	0.7	0	0	-5.3	0	5.7	0	cell wall.degradation.pectate lyases and polygalacturonases	"PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding polygalacturonase inhibiting protein 1 (PGIP1) mRNA, Identical to Polygalacturonase inhibitor 1 precursor (Polygalacturonase-inhibiting protein) (PGIP-1) (PGIP1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_109024	NODE_9325_length_123_cov_18.024391	0.1	2.3	33.8	4.9	0	-2.8	-8.4	0	not assigned.unknown	not assigned.unknown
MSGI1_99730	NODE_9327_length_133_cov_149.180450	72.9	81	23.8	37.7	0	0	1.6	1.1	not assigned.unknown	not assigned.unknown
MSGI1_42527	NODE_9332_length_281_cov_50.355873	5.7	56.1	16	56.5	3.3	1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_56260	NODE_9337_length_221_cov_84.932129	55.9	16.7	8.6	7.8	-1.7	0	2.7	0	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2A.4 (HTA12) [Arabidopsis Thaliana] (GB:Q9LZ46); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT5G59870.1); similar to Histone H2A (GB:Q9M531); contains InterPro domain Histone-fold;"
MSGI1_31699	NODE_934_length_353_cov_91.756371	83.1	71.7	3.3	3.5	0	0	4.7	4.4	not assigned.unknown	not assigned.unknown
MSGI1_43047	NODE_9345_length_278_cov_36.625900	42.3	40.8	6.2	17.3	0	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_40259	NODE_9346_length_293_cov_13.252560	14.8	3.4	1	4.1	0	0	3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_118243	NODE_9347_length_61_cov_18.459017	11	5	0	0.4	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_62133	NODE_9350_length_202_cov_30.757425	34.5	32.5	10	24	0	0	1.8	0	RNA.regulation of transcription.unclassified	zinc finger (Ran-binding) family protein  similar to zinc finger (Ran-binding) family protein [Arabidopsis thaliana] (TAIR:AT5G25490.1); similar to zinc finger protein-like protein [Gossypium hirsutum] (GB:AAZ94630.1); contains InterPro domain Zinc finge
MSGI1_62133	NODE_9350_length_202_cov_30.757425	34.5	32.5	10	24	0	0	1.8	0	signalling.G-proteins	zinc finger (Ran-binding) family protein  similar to zinc finger (Ran-binding) family protein [Arabidopsis thaliana] (TAIR:AT5G25490.1); similar to zinc finger protein-like protein [Gossypium hirsutum] (GB:AAZ94630.1); contains InterPro domain Zinc finge
MSGI1_51779	NODE_9358_length_238_cov_9.453781	10.2	0.3	27.5	1.8	-5.1	-3.9	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	"auxin-responsive protein, putative  similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G21210.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12778.1); contains InterPro domain Auxin responsive SAUR prot"
MSGI1_118241	NODE_937_length_61_cov_115.540985	103.7	106.1	55.8	122.3	0	1.1	0	0	transport.unspecified cations	"AAC2 (ADP/ATP CARRIER 2); ATP:ADP antiporter/ binding Encodes mitochondrial ADP/ATP carrier Identical to ADP,ATP carrier protein 2, mitochondrial precursor (ADP/ATP translocase 2) (Adenine nucleotide translocator 2) (ANT 2) (ANT2) [Arabidopsis Thaliana]"
MSGI1_118240	NODE_9372_length_61_cov_34.163933	21.4	23.9	0	0	0	0	5.4	5.6	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	"NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial  Identical to NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-20kD) (CI-20kD) [Arabidopsis Thaliana] (GB:Q42577); similar to NADH-ub"
MSGI1_21415	NODE_9374_length_478_cov_10.460251	5.3	10	44	22.3	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_114231	NODE_9376_length_95_cov_29.357895	17.2	43.9	15	21.6	1.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_36955	NODE_9378_length_313_cov_63.623005	52.2	5.5	13.6	7.5	-3.2	0	1.9	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	"ELI3-2 (ELICITOR-ACTIVATED GENE 3) Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria.  Though similar to mannitol dehydrogenases, this enzyme does not have"
MSGI1_59840	NODE_9379_length_209_cov_47.330143	21.2	32	54.5	37.3	0	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_22165	NODE_9382_length_467_cov_27.843683	9.1	38.2	32.2	29.1	2.1	0	-1.8	0	metal handling.acquisition	"ATFRO6/FRO6 (FERRIC REDUCTION OXIDASE 6); ferric-chelate reductase/ oxidoreductase Encodes a putative ferric chelate reductase. Its mRNA is expressed in green aerial tissues (shoot, flower and cotyledon) in a light- and cell differentiation-specific mann"
MSGI1_41533	NODE_9383_length_286_cov_38.807693	0.1	0	91.6	1.2	0	-6.3	-9.8	0	not assigned.unknown	not assigned.unknown
MSGI1_54109	NODE_939_length_229_cov_118.371178	115.6	51.6	0.5	2.4	-1.2	0	7.9	4.4	cell wall.degradation.pectate lyases and polygalacturonases	JP630; polygalacturonase Encodes aromatic rich glycoprotein JP630. Identical to Probable polygalacturonase non-catalytic subunit JP630 precursor (Aromatic-rich glycoprotein JP630) (JP630) [Arabidopsis Thaliana] (GB:P92982;GB:Q9S9K5); similar to BURP doma
MSGI1_55731	NODE_9391_length_223_cov_11.304933	0.7	0.1	24.1	17.8	0	0	-5.1	-7.5	signalling.receptor kinases.S-locus glycoprotein like	protein kinase family protein  similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G19130.1); similar to Protein kinase; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE87106.1); contain
MSGI1_80847	NODE_9401_length_160_cov_9.762500	15.7	16.7	2	6.4	0	0	3	0	not assigned.unknown	not assigned.unknown
MSGI1_56003	NODE_9403_length_222_cov_13.193694	13.2	42.8	16.5	32.1	1.7	0	0	0	secondary metabolism.phenylpropanoids	isochorismatase hydrolase family protein  similar to hypothetical protein [Plantago major] (GB:CAH59421.1); contains InterPro domain Isochorismatase hydrolase; (InterPro:IPR000868)
MSGI1_118239	NODE_9406_length_61_cov_50.934425	37.5	0.9	23.1	9.1	-5.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_118237	NODE_9417_length_61_cov_74.704918	47.4	30.2	35.1	9.9	0	-1.8	0	0	cell wall	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_118237	NODE_9417_length_61_cov_74.704918	47.4	30.2	35.1	9.9	0	-1.8	0	0	protein.degradation.subtilases	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_51778	NODE_9419_length_238_cov_7.848740	7.6	0	21.4	0	0	-5.4	0	0	secondary metabolism.wax	"CER1 (ECERIFERUM 1) Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also l"
MSGI1_8305	NODE_9422_length_841_cov_66.756241	37.7	54.1	120.8	51	0	-1.2	-1.7	0	protein.degradation.aspartate protease	aspartyl protease family protein  similar to pepsin A [Arabidopsis thaliana] (TAIR:AT1G62290.2); similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT1G11910.1); similar to aspartic protease (GB:AAB03108.1); similar to aspartic prot
MSGI1_39750	NODE_9426_length_296_cov_15.625000	0	1	13.2	0.7	0	-4.2	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_25235	NODE_9429_length_424_cov_15.254717	19.6	16.5	0	0.3	0	0	5.3	5.8	transport.metabolite transporters at the mitochondrial membrane	mitochondrial substrate carrier family protein  similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G51050.1); similar to Os05g0585900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056459.1); similar to mitochond
MSGI1_46804	NODE_9431_length_260_cov_114.065384	71.8	40.7	22.9	23.5	0	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_69456	NODE_9435_length_183_cov_16.065575	17.2	9.3	0.2	0	0	0	6.4	0	not assigned.unknown	not assigned.unknown
MSGI1_78014	NODE_9449_length_165_cov_3.933333	3.3	4.4	13.1	21.5	0	0	0	-2.3	not assigned.unknown	not assigned.unknown
MSGI1_112466	NODE_9460_length_109_cov_453.238525	217.3	179	6	12.7	0	0	5.2	3.8	not assigned.unknown	not assigned.unknown
MSGI1_15196	NODE_9472_length_598_cov_8.824414	1	1	22.9	1.6	0	-3.8	-4.5	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_21189	NODE_9473_length_481_cov_94.336800	46.6	73.7	27.3	24.7	0	0	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_71675	NODE_9474_length_178_cov_25.117977	3.3	7.2	27.5	5.3	0	-2.4	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_65001	NODE_9480_length_194_cov_143.453613	83.5	26.7	0.8	0	-1.6	0	6.7	5.7	not assigned.unknown	not assigned.unknown
MSGI1_117280	NODE_9482_length_68_cov_80.705879	30.9	186.9	63	27.3	2.6	-1.2	0	2.8	RNA.regulation of transcription.C2H2 zinc finger family	STZ (SALT TOLERANCE ZINC FINGER); nucleic acid binding / transcription factor/ zinc ion binding Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by
MSGI1_10316	NODE_9488_length_749_cov_10.230974	14.4	1.3	6.2	3.3	-3.5	0	0	0	cell wall.degradation.pectate lyases and polygalacturonases	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT1G02460.1); similar to unknown protein [O
MSGI1_14130	NODE_9496_length_626_cov_7.979233	3	3.2	22.9	0.7	0	-5	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_86430	NODE_9498_length_151_cov_142.748337	142.2	21.1	0.2	0	-2.8	0	9.5	5.4	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit JP650 precursor (Aromatic-rich glycoprotein JP650) (JP650) [Arabidopsis Thaliana] (GB:P92990;GB:O64599;GB:Q8H7B8;GB:Q93ZQ4); simil"
MSGI1_59500	NODE_9498_length_210_cov_12.704762	4.4	0.8	31.5	2.2	0	-3.8	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_41913	NODE_9513_length_284_cov_21.757042	71.8	43.6	25.7	48.8	0	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_60132	NODE_952_length_208_cov_58.100960	0.1	0.3	77.8	2.8	0	-4.8	-9.6	0	not assigned.unknown	not assigned.unknown
MSGI1_104166	NODE_9525_length_128_cov_14.257812	10.3	18.4	0	0	0	0	0	5.2	not assigned.unknown	not assigned.unknown
MSGI1_35836	NODE_9526_length_321_cov_8.080997	18.2	0.7	1.9	0	-4.7	0	3.3	0	cell wall	"GT/UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2); UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Induced by Salicylic acid, virus, fungus and bacteria.Involved in the trypto"
MSGI1_35836	NODE_9526_length_321_cov_8.080997	18.2	0.7	1.9	0	-4.7	0	3.3	0	misc.UDP glucosyl and glucoronyl transferases	"GT/UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2); UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Induced by Salicylic acid, virus, fungus and bacteria.Involved in the trypto"
MSGI1_47613	NODE_9541_length_256_cov_35.304688	4.1	1.9	86.7	0.8	0	-6.8	-4.4	0	misc.UDP glucosyl and glucoronyl transferases	"UGT74D1 (UDP-glucosyl transferase 74D1); UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein"
MSGI1_117011	NODE_9548_length_70_cov_98.914284	77.5	37.5	61.3	64.9	-1	0	0	0	DNA.synthesis/chromatin structure.histone	"histone H2B, putative  Identical to Histone H2B.1 (HTB1) [Arabidopsis Thaliana] (GB:Q9LQQ4;GB:Q8L950); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold; (InterPro:"
MSGI1_111753	NODE_9549_length_115_cov_103.260872	97.3	3.2	20	1.7	-4.9	-3.6	2.3	0	RNA.regulation of transcription.putative transcription regulator	"pepsin A  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G54400.1); similar to Peptidase A1, pepsin [Medicago truncatula] (GB:ABE83791.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro"
MSGI1_110010	NODE_9552_length_122_cov_53.844261	41.4	28.6	163.1	35	0	-2.2	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_12961	NODE_9555_length_659_cov_11.808802	16.4	2.6	20.5	1.4	-2.7	-3.9	0	0	signalling.calcium	calmodulin-binding family protein  similar to calmodulin-binding family protein [Arabidopsis thaliana] (TAIR:AT3G58480.1); similar to IQ calmodulin-binding re (GB:ABE79293.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048)
MSGI1_118235	NODE_9557_length_61_cov_19.672131	10.1	12.8	0	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_107016	NODE_9558_length_125_cov_40.888000	26.5	31.8	4.2	10	0	0	2.7	1.7	not assigned.unknown	not assigned.unknown
MSGI1_53048	NODE_9559_length_233_cov_19.467812	3.6	4.9	20.7	13.3	0	0	-2.5	0	amino acid metabolism.degradation.branched-chain group.shared	"alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative  Identical to Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial precursor (EC 2.6.1.44) (Beta-alanine-pyruvate aminotransferas"
MSGI1_53048	NODE_9559_length_233_cov_19.467812	3.6	4.9	20.7	13.3	0	0	-2.5	0	amino acid metabolism.synthesis.central amino acid metabolism.alanine.alanine-glyoxylate aminotransferase	"alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative  Identical to Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial precursor (EC 2.6.1.44) (Beta-alanine-pyruvate aminotransferas"
MSGI1_28277	NODE_9560_length_387_cov_54.607235	35.4	111.7	0.1	0	1.7	0	8.5	7.8	not assigned.unknown	not assigned.unknown
MSGI1_70369	NODE_9563_length_181_cov_17.209946	38.3	12.4	14	27.9	-1.6	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_65757	NODE_9564_length_192_cov_6.234375	2.8	4.4	13.6	20.8	0	0	0	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_44030	NODE_9565_length_273_cov_255.912094	138.2	209.7	65.9	148.8	0	1.2	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_7895	NODE_9569_length_861_cov_9.141696	8.8	12.6	65.9	4.1	0	-4	-2.9	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"DIN10 (DARK INDUCIBLE 10); hydrolase, hydrolyzing O-glycosyl compounds encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. In"
MSGI1_112258	NODE_9579_length_111_cov_26.774775	27.6	1.8	6.5	2.3	-3.9	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_115726	NODE_9585_length_81_cov_52.555557	39.3	0.8	4.5	1.4	-5.6	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_22555	NODE_9593_length_462_cov_16.532467	1.7	2.1	28.5	4.9	0	-2.5	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_75950	NODE_9594_length_169_cov_10.485208	0	0	19.2	33.6	0	0	-5.3	-6.1	cell wall	"ATPDIL1-2 (PDI-LIKE 1-2); protein disulfide isomerase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Identical to Probable protein disulfide-isomerase 2 precursor (EC 5."
MSGI1_75950	NODE_9594_length_169_cov_10.485208	0	0	19.2	33.6	0	0	-5.3	-6.1	redox.thioredoxin	"ATPDIL1-2 (PDI-LIKE 1-2); protein disulfide isomerase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Identical to Probable protein disulfide-isomerase 2 precursor (EC 5."
MSGI1_30164	NODE_9596_length_367_cov_22.258856	15.6	15.9	0.3	0	0	0	5.7	5	signalling.receptor kinases.leucine rich repeat VII	leucine-rich repeat family protein  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G75640.1); similar to Os04g0576900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053628.1); similar to
MSGI1_30164	NODE_9596_length_367_cov_22.258856	15.6	15.9	0.3	0	0	0	5.7	5	cell wall	leucine-rich repeat family protein  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G75640.1); similar to Os04g0576900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053628.1); similar to
MSGI1_34598	NODE_9602_length_330_cov_23.272728	0	0	56.6	4	0	-3.8	-6.8	0	not assigned.unknown	not assigned.unknown
MSGI1_31135	NODE_9604_length_358_cov_28.667597	35.7	0.9	5	1.4	-5.3	0	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_62857	NODE_9606_length_200_cov_4.505000	0.3	0.3	3.7	10.4	0	0	0	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_27556	NODE_9607_length_395_cov_62.481014	51.4	56.4	23.4	29.7	0	0	1.1	0	RNA.regulation of transcription.HDA	HD2C (HISTONE DEACETYLASE 2C); nucleic acid binding / zinc ion binding HD2-type histone deacetylase HDAC. Involved in the ABA and stress responses. Mediates transcriptional repression Identical to Histone deacetylase 2c (HD-tuins protein 3) (HD2C) [Arabi
MSGI1_111038	NODE_9629_length_121_cov_116.305786	34.3	71.9	36.8	103.2	1.1	1.5	0	0	TCA / org. transformation.other organic acid transformaitons.malic	"ATNADP-ME1 (NADP-MALIC ENZYME 1); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to"
MSGI1_3985	NODE_9631_length_1173_cov_28.526001	41.3	44.1	1	0.3	0	0	5.4	7.2	not assigned.unknown	not assigned.unknown
MSGI1_118232	NODE_9636_length_61_cov_57.918034	32.3	130	0.4	0	2	0	6.3	8	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN1 (DARK INDUCIBLE 6) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumul"
MSGI1_84506	NODE_9642_length_154_cov_27.376623	17	21.4	47	30.8	0	0	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_57381	NODE_9643_length_217_cov_7.359447	0.2	0	19.7	19.1	0	0	-6.6	-5.3	secondary metabolism.isoprenoids.non-mevalonate pathway.geranylgeranyl pyrophosphate synthase	GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1); farnesyltranstransferase Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells a
MSGI1_109020	NODE_9648_length_123_cov_3.089431	2.2	4.4	17.7	6	0	0	-3	0	misc.peroxidases	"peroxidase  Identical to Peroxidase 25 precursor (EC 1.11.1.7) (Atperox P25) (PER25) [Arabidopsis Thaliana] (GB:O80822;GB:Q8L728); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G64120.1); similar to putative peroxidase [Oryza sativa (ja"
MSGI1_76457	NODE_9651_length_168_cov_59.166668	30.9	8.9	4.9	4.6	-1.8	0	2.7	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_65378	NODE_9652_length_193_cov_17.155441	22	0.8	0	0.2	-4.8	0	5.5	0	stress.biotic	CHAT (ACETYL COA:(Z)-3-HEXEN-1-OL ACETYLTRANSFERASE); acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase  similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G17540.1); similar to benzoyl coenzyme A: benzyl alcohol benzoyl transferase [Petuni
MSGI1_31134	NODE_9654_length_358_cov_394.452515	238.1	121.9	61.4	111.8	0	0	2	0	cell wall	CRT1 (CALRETICULIN 1); calcium ion binding Encodes calreticulin CRT1. Identical to Calreticulin-1 precursor (CRT1) [Arabidopsis Thaliana] (GB:O04151); similar to calreticulin 2 (CRT2) [Arabidopsis thaliana] (TAIR:AT1G09210.1); similar to calreticulin-1 [
MSGI1_31134	NODE_9654_length_358_cov_394.452515	238.1	121.9	61.4	111.8	0	0	2	0	signalling.calcium	CRT1 (CALRETICULIN 1); calcium ion binding Encodes calreticulin CRT1. Identical to Calreticulin-1 precursor (CRT1) [Arabidopsis Thaliana] (GB:O04151); similar to calreticulin 2 (CRT2) [Arabidopsis thaliana] (TAIR:AT1G09210.1); similar to calreticulin-1 [
MSGI1_96552	NODE_9659_length_137_cov_87.941605	81.3	48.7	1	0	0	0	6.3	6.6	not assigned.unknown	not assigned.unknown
MSGI1_75461	NODE_9674_length_170_cov_236.252945	136.9	94	59.4	119.1	0	1	1.2	0	TCA / org. transformation.other organic acid transformaitons.cyt MDH	"malate dehydrogenase, cytosolic, putative  Identical to Malate dehydrogenase, cytoplasmic 2 (EC 1.1.1.37) [Arabidopsis Thaliana] (GB:P57106;GB:Q9LSX3); similar to malate dehydrogenase, cytosolic, putative [Arabidopsis thaliana] (TAIR:AT1G04410.1); simila"
MSGI1_111405	NODE_9675_length_118_cov_8.559322	7.9	12.4	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_63927	NODE_9675_length_197_cov_19.822334	2.5	3.5	13.9	50.8	0	1.9	0	-3.9	not assigned.unknown	not assigned.unknown
MSGI1_29765	NODE_9679_length_371_cov_8.029650	0.6	0.2	9.2	12.1	0	0	0	-5.9	not assigned.unknown	not assigned.unknown
MSGI1_50974	NODE_9681_length_241_cov_216.290451	166.7	103.3	58	44.4	0	0	1.5	1.2	TCA / org. transformation.other organic acid transformaitons.atp-citrate lyase	ACLB-1 (ATP-citrate lyase B-1) One of the two genes encoding subunit B of the trimeric enzyme ATP Citrate lyase similar to ACLB-2 (ATP-citrate lyase B-2) [Arabidopsis thaliana] (TAIR:AT5G49460.1); similar to ATP citrate lyase a-subunit [Lupinus albus] (G
MSGI1_118228	NODE_9685_length_61_cov_81.393440	58	39.6	0.4	0	0	0	7.2	6.3	hormone metabolism.brassinosteroid.synthesis-degradation.sterols.CYP51	"CYP51G1 (CYTOCHROME P450 51); oxygen binding putative obtusifoliol 14-alpha demethylase involved in sterol biosynthesis. similar to CYP707A3 (cytochrome P450, family 707, subfamily A, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G45340."
MSGI1_118227	NODE_9690_length_61_cov_66.819672	64.9	44.4	145.6	51.5	0	-1.5	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_94247	NODE_9691_length_140_cov_11.885715	38.3	98	41.3	115	1.4	1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_13779	NODE_9692_length_636_cov_12.759434	17.8	2	7.2	1.9	-3.2	0	0	0	transport.ABC transporters and multidrug resistance systems	"ATPDR4/PDR4 (PLEIOTROPIC DRUG RESISTANCE 4); ATPase, coupled to transmembrane movement of substances  Identical to Probable pleiotropic drug resistance protein 4 (PDR4) [Arabidopsis Thaliana] (GB:O81016); similar to ATPDR12/PDR12 (PLEIOTROPIC DRUG RESIST"
MSGI1_80845	NODE_9697_length_160_cov_5.806250	0.5	1.4	12.1	7.3	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_118226	NODE_9700_length_61_cov_42.770493	43.1	23.4	0	0	0	0	6.4	5.5	not assigned.unknown	not assigned.unknown
MSGI1_64310	NODE_9701_length_196_cov_15.494898	4.8	7	35.1	3.3	0	-3.4	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_112875	NODE_9706_length_106_cov_44.915092	34.7	24.5	31	6.6	0	-2.2	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_57708	NODE_9709_length_216_cov_23.504629	18.8	23.5	0.4	0.4	0	0	5.6	5.9	not assigned.unknown	not assigned.unknown
MSGI1_49184	NODE_9710_length_249_cov_113.662651	69.4	19.8	43.9	48.9	-1.8	0	0	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_27311	NODE_9713_length_398_cov_11.017588	2.5	2	3.7	18.6	0	2.3	0	-3.2	glycolysis.PK	"pyruvate kinase, putative  similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT5G63680.1); similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT4G26390.1); similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:A"
MSGI1_73078	NODE_9715_length_175_cov_44.468571	23.5	23	0.4	0	0	0	5.9	5.5	not assigned.unknown	not assigned.unknown
MSGI1_59838	NODE_9721_length_209_cov_49.593300	4.4	11	61.5	85.3	0	0	-3.8	-3	not assigned.unknown	not assigned.unknown
MSGI1_118224	NODE_9727_length_61_cov_119.475410	74.4	61.8	35.5	69.6	0	1	1.1	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L17 (RPL17A)  Identical to 60S ribosomal protein L17-1 (RPL17A) [Arabidopsis Thaliana] (GB:Q93VI3;GB:Q9FZJ5); similar to 60S ribosomal protein L17 (RPL17B) [Arabidopsis thaliana] (TAIR:AT1G67430.1); similar to ribosomal protein [Pet
MSGI1_118222	NODE_9735_length_61_cov_167.278687	32.8	38.8	8.4	7.4	0	0	2	2.4	minor CHO metabolism.myo-inositol.InsP Synthases	"MI-1-P SYNTHASE (Myo-inositol-1-phosphate synthase); inositol-3-phosphate synthase Columbia myo-inositol-1-phosphate synthase mRNA, complete Identical to Inositol-3-phosphate synthase isozyme 1 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 1) (MI-1-P"
MSGI1_62855	NODE_9737_length_200_cov_40.869999	21.9	59.5	75.5	30.9	1.4	-1.3	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_63926	NODE_9739_length_197_cov_461.837555	248.8	127.1	56	105.6	0	0	2.2	0	signalling.calcium	CRT1 (CALRETICULIN 1); calcium ion binding Encodes calreticulin CRT1. Identical to Calreticulin-1 precursor (CRT1) [Arabidopsis Thaliana] (GB:O04151); similar to calreticulin 2 (CRT2) [Arabidopsis thaliana] (TAIR:AT1G09210.1); similar to calreticulin-1 [
MSGI1_62132	NODE_9746_length_202_cov_13.673267	0.3	0.1	34.5	0.4	0	-6.4	-6.8	0	RNA.regulation of transcription.NAC domain transcription factor family	"NAP (NAC-LIKE, ACTIVATED BY AP3/PI); transcription factor Encodes a member of the NAC transcription factor gene family.  It is expressed in floral primordia and upregulated by AP3 and PI.  Its expression is associated with leaf senescence. Identical to N"
MSGI1_62132	NODE_9746_length_202_cov_13.673267	0.3	0.1	34.5	0.4	0	-6.4	-6.8	0	cell wall	"NAP (NAC-LIKE, ACTIVATED BY AP3/PI); transcription factor Encodes a member of the NAC transcription factor gene family.  It is expressed in floral primordia and upregulated by AP3 and PI.  Its expression is associated with leaf senescence. Identical to N"
MSGI1_62132	NODE_9746_length_202_cov_13.673267	0.3	0.1	34.5	0.4	0	-6.4	-6.8	0	cell wall	"NAP (NAC-LIKE, ACTIVATED BY AP3/PI); transcription factor Encodes a member of the NAC transcription factor gene family.  It is expressed in floral primordia and upregulated by AP3 and PI.  Its expression is associated with leaf senescence. Identical to N"
MSGI1_62132	NODE_9746_length_202_cov_13.673267	0.3	0.1	34.5	0.4	0	-6.4	-6.8	0	development.unspecified	"NAP (NAC-LIKE, ACTIVATED BY AP3/PI); transcription factor Encodes a member of the NAC transcription factor gene family.  It is expressed in floral primordia and upregulated by AP3 and PI.  Its expression is associated with leaf senescence. Identical to N"
MSGI1_69455	NODE_9754_length_183_cov_15.923497	18.2	9.1	3.4	5.1	0	0	2.4	0	stress.abiotic.heat	DNAJ heat shock N-terminal domain-containing protein  similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G02100.1); similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:
MSGI1_55163	NODE_9760_length_225_cov_35.573334	63.2	54.3	41.8	81	0	1	0	0	redox.thioredoxin	"ATPDIL1-1 (PDI-LIKE 1-1); protein disulfide isomerase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9 Iden"
MSGI1_55163	NODE_9760_length_225_cov_35.573334	63.2	54.3	41.8	81	0	1	0	0	cell wall	"ATPDIL1-1 (PDI-LIKE 1-1); protein disulfide isomerase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9 Iden"
MSGI1_6240	NODE_9761_length_957_cov_29.923719	42.2	4.5	16.6	3.4	-3.2	0	1.3	0	cell wall	short-chain dehydrogenase/reductase (SDR) family protein  similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G61220.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABD28440.
MSGI1_6240	NODE_9761_length_957_cov_29.923719	42.2	4.5	16.6	3.4	-3.2	0	1.3	0	misc.short chain dehydrogenase/reductase (SDR)	short-chain dehydrogenase/reductase (SDR) family protein  similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G61220.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABD28440.
MSGI1_32626	NODE_9767_length_345_cov_47.513042	32.7	169.3	76.6	26.1	2.4	-1.6	-1.2	2.7	RNA.regulation of transcription.C2H2 zinc finger family	"C2H2; nucleic acid binding / transcription factor/ zinc ion binding putative c2h2 zinc finger transcription factor mRNA, similar to STZ (SALT TOLERANCE ZINC FINGER), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TA"
MSGI1_36373	NODE_9769_length_317_cov_118.936905	76.6	61.5	33.7	67.3	0	1	1.2	0	protein.postranslational modification	"T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative  Identical to T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) [Arabidopsis Thaliana] (GB:O04450); similar to chaperonin, putative [Arabidopsi"
MSGI1_32273	NODE_9770_length_348_cov_5.152299	0.1	0.2	11.6	11.9	0	0	-6.9	-5.9	not assigned.unknown	not assigned.unknown
MSGI1_8853	NODE_9784_length_813_cov_118.073799	28.3	52.7	12.7	15.2	0	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_52548	NODE_9785_length_235_cov_73.655319	60	35.4	108.3	98.3	0	0	0	-1.5	PS.lightreaction.photosystem II.LHC-II	"LHCB4.3 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II Identical to Chlorophyll a-b binding protein CP29.3, chloroplast precursor (LHCII protein 4.3) (LHCB4.3) (LHCB4.3) [Arabidop"
MSGI1_89125	NODE_9788_length_147_cov_27.551020	36.6	11.8	25.5	21.9	-1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_49598	NODE_9796_length_247_cov_8.704453	8.5	27	49.2	48.4	0	0	-2.5	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1); hydrolase, hydrolyzing O-glycosyl compounds  Identical to Probable glycosyltransferase At1g55740 (EC 2.4.1.-) [Arabidopsis Thaliana] (GB:Q84VX0;GB:Q9LFZ7); similar to ATSIP2 (ARABIDOPSIS THALIANA SEED IMBI"
MSGI1_95757	NODE_98_length_138_cov_8.311594	0	0	17.3	0.3	0	-5.8	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_28569	NODE_9802_length_384_cov_25.052084	12.3	16.1	44.6	21.9	0	0	-1.9	0	redox.glutaredoxins	glutaredoxin family protein  similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G10630.1); similar to Os01g0235900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042526.1); similar to hypothetical protein MtrDRAFT_AC139526g15v1 [Me
MSGI1_59497	NODE_9809_length_210_cov_11.757143	7.8	18.7	36.4	14.2	0	0	-2.2	0	"misc.oxidases - copper, flavone etc."	"copper amine oxidase, putative  similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G43670.1); similar to peroxisomal copper-containing amine oxidase [Glycine max] (GB:AAD40979.1); similar to Copper amine oxidase [Medicago truncatul"
MSGI1_53623	NODE_9812_length_231_cov_34.554111	41.4	0.4	6.5	0.5	-6.7	0	2.7	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_53623	NODE_9812_length_231_cov_34.554111	41.4	0.4	6.5	0.5	-6.7	0	2.7	0	misc.GDSL-motif lipase	ATLTL1/LTL1 (LI-TOLERANT LIPASE 1); carboxylic ester hydrolase  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G33370.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipo
MSGI1_31928	NODE_9812_length_351_cov_70.011398	36.5	40.9	7.5	5.3	0	0	2.3	2.9	not assigned.unknown	not assigned.unknown
MSGI1_100616	NODE_9813_length_132_cov_6.901515	0	0	6.3	15.1	0	0	0	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_37255	NODE_9818_length_311_cov_13.977492	0	0	15.7	16	0	0	-5	-5	not assigned.unknown	not assigned.unknown
MSGI1_28477	NODE_9820_length_385_cov_62.532467	70	2	89.3	1.9	-5.1	-5.6	0	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G62510.1); similar to 14 kDa polypeptide [Catharanthus rose
MSGI1_59496	NODE_9823_length_210_cov_39.309525	34.3	7.7	19.9	11.8	-2.2	0	0	0	PS.lightreaction.other electron carrier (ox/red).ferredoxin	ferredoxin-related  similar to ferredoxin-related [Arabidopsis thaliana] (TAIR:AT4G32590.1); similar to Ferredoxin [Medicago truncatula] (GB:ABE80924.1); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain
MSGI1_103281	NODE_9825_length_129_cov_10.534883	6.7	9.8	21.5	4.5	0	-2.3	0	0	transporter.membrane system unknown	"glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative  similar to transporter, putative [Arabidopsis thaliana] (TAIR:AT4G25220.1); similar to putative Glycerol-3-phosphate transporter [Oryza sativa (japonica cultivar-group)"
MSGI1_16869	NODE_9827_length_560_cov_38.848213	5.9	40.5	17.4	10.9	2.8	0	0	1.9	not assigned.unknown	not assigned.unknown
MSGI1_46611	NODE_984_length_261_cov_72.283524	19.1	18.6	0.2	0.3	0	0	6.6	6	not assigned.unknown	not assigned.unknown
MSGI1_30785	NODE_9846_length_361_cov_25.063711	2.5	10.1	18.5	9	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_107974	NODE_9848_length_124_cov_89.758064	119.2	68.1	40.9	89.1	0	1.1	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_36779	NODE_985_length_314_cov_248.047775	151.5	81.3	46.4	86.8	0	0	1.7	0	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L21 (RPL21C)  Identical to 60S ribosomal protein L21-1 (RPL21C) [Arabidopsis Thaliana] (GB:Q43291); similar to 60S ribosomal protein L21 (RPL21A) [Arabidopsis thaliana] (TAIR:AT1G09590.1); similar to 60S ribosomal protein L21, putat"
MSGI1_21754	NODE_9856_length_473_cov_30.583509	19.9	62.3	4.7	6.3	1.6	0	0	3.3	cell wall	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_21754	NODE_9856_length_473_cov_30.583509	19.9	62.3	4.7	6.3	1.6	0	0	3.3	"misc.oxidases - copper, flavone etc."	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_99729	NODE_9865_length_133_cov_30.413534	15.7	114.4	61.1	8	2.9	-2.9	-2	3.8	not assigned.unknown	not assigned.unknown
MSGI1_57974	NODE_9865_length_215_cov_77.651161	47.5	130.1	150	169.4	1.5	0	-1.7	0	stress.abiotic.heat	ATJ3 (Arabidopsis thaliana DnaJ homologue 3) homologous to the co-chaperon DNAJ protein from E coli Identical to Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) (ATJ3) [Arabidopsis Thaliana] (GB:Q94AW8;GB:O22663;GB:Q42530); similar to ATJ2 (Arabidopsis thaliana
MSGI1_42097	NODE_9870_length_283_cov_12.727915	11.7	62	27.9	52	2.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_7875	NODE_9870_length_862_cov_13.664733	0	3.3	28.6	16.3	0	0	-5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_107973	NODE_9877_length_124_cov_9.612904	17.4	22	17.1	54.7	0	1.7	0	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_75948	NODE_9878_length_169_cov_8.017752	0.9	6.1	17.8	1.3	0	-3.8	-4.3	0	not assigned.unknown	not assigned.unknown
MSGI1_111404	NODE_9879_length_118_cov_56.084747	6.1	26.7	18.3	22.8	2.1	0	0	0	RNA.regulation of transcription.bZIP transcription factor family	"bZIP family transcription factor (TGA1)  Identical to Transcription factor TGA1 (DNA-binding protein TGA1a-like protein) (AtbZIP47) (TGA1) [Arabidopsis Thaliana] (GB:Q39237;GB:Q8LBQ9;GB:Q9FJP4); similar to TGA4 (TGACG MOTIF-BINDING FACTOR 4), DNA binding"
MSGI1_52817	NODE_9882_length_234_cov_14.551282	19.6	12.2	1.8	3.9	0	0	3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_55449	NODE_9883_length_224_cov_6.955357	0	0.2	16.5	8.1	0	0	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_80844	NODE_9887_length_160_cov_37.549999	22	17.4	73.5	11.4	0	-2.7	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_66947	NODE_9892_length_189_cov_5.164021	0	0	8	13.6	0	0	0	-4.8	DNA.unspecified	"reverse transcriptase, putative / RNA-dependent DNA polymerase, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G34320.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1); contains InterPro domain Polynucleotidy"
MSGI1_13580	NODE_9897_length_642_cov_19.672897	13.7	10.8	0	0	0	0	4.8	4.4	protein.degradation	PAB1 (20S proteasome alpha subunit B1); peptidase Encodes 20S proteasome subunit PAB1 (PAB1). Identical to Proteasome subunit alpha type 2-B (EC 3.4.25.1) (20S proteasome alpha subunit B-2) (PAB2) [Arabidopsis Thaliana] (GB:Q8L4A7;GB:O64532); Identical t
MSGI1_48517	NODE_9901_length_252_cov_71.706352	55.8	24.2	26	23.3	-1.2	0	1.1	0	stress.abiotic.unspecified	"ozone-responsive stress-related protein, putative  similar to ATOZI1 (Arabidopsis thaliana ozone-induced protein 1) [Arabidopsis thaliana] (TAIR:AT4G00860.1); similar to Os06g0115100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056609.1); similar t"
MSGI1_74941	NODE_9907_length_171_cov_8.918129	1.7	4	22	5.2	0	0	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_94958	NODE_9908_length_139_cov_110.827339	43.2	47.6	77.2	27.8	0	-1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_36112	NODE_9908_length_319_cov_13.736677	4.8	5.1	25	22.2	0	0	-2.4	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_72625	NODE_9910_length_176_cov_234.573868	177.7	35.7	45.4	5.9	-2.3	-2.9	2	2.6	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G11210.1); similar to CPRD49 [Vigna unguiculata] (GB:BAB33036.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (Inter"
MSGI1_118217	NODE_9911_length_61_cov_142.213120	81.3	0.2	19.1	0.4	-8.7	-5.6	2.1	0	cell wall	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25460.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain Protein of unknown function DUF642
MSGI1_101504	NODE_9913_length_131_cov_31.809160	0.2	0.3	31.1	29	0	0	-7.3	-6.6	not assigned.unknown	not assigned.unknown
MSGI1_33662	NODE_9915_length_337_cov_41.842731	33.1	41.2	0.7	0.3	0	0	5.6	7.1	not assigned.unknown	not assigned.unknown
MSGI1_63548	NODE_9919_length_198_cov_157.186874	103.4	31.2	24.2	94.9	-1.7	2	2.1	-1.6	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_51548	NODE_9920_length_239_cov_206.284515	53	45.4	7.6	11.9	0	0	2.8	1.9	protein.synthesis.misc ribososomal protein	60S ribosomal protein L17 (RPL17B)  Identical to 60S ribosomal protein L17-2 (RPL17B) [Arabidopsis Thaliana] (GB:P51413;GB:O64803); similar to 60S ribosomal protein L17 (RPL17A) [Arabidopsis thaliana] (TAIR:AT1G27400.1); similar to ribosomal protein [Pet
MSGI1_38810	NODE_9927_length_301_cov_33.401993	21.3	4.9	4	3.3	-2.1	0	2.4	0	cell wall	"peroxidase, putative  Identical to Peroxidase 54 precursor (EC 1.11.1.7) (Atperox P54) (ATP29a) (PER54) [Arabidopsis Thaliana] (GB:Q9FG34;GB:P93729); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G06720.1); similar to Peroxidase A2 (GB:"
MSGI1_38810	NODE_9927_length_301_cov_33.401993	21.3	4.9	4	3.3	-2.1	0	2.4	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 54 precursor (EC 1.11.1.7) (Atperox P54) (ATP29a) (PER54) [Arabidopsis Thaliana] (GB:Q9FG34;GB:P93729); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G06720.1); similar to Peroxidase A2 (GB:"
MSGI1_72171	NODE_9930_length_177_cov_28.192091	0	0	29.2	32.3	0	0	-5.9	-6	not assigned.unknown	not assigned.unknown
MSGI1_79704	NODE_9932_length_162_cov_13.598765	48.5	17	13.1	27.2	-1.5	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_52547	NODE_9937_length_235_cov_10.395744	2.5	2.7	17.1	5.1	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_105084	NODE_9944_length_127_cov_24.732283	0	0	104.6	57.1	0	0	-7.7	-6.8	not assigned.unknown	not assigned.unknown
MSGI1_118215	NODE_9948_length_61_cov_139.524597	136.1	30.2	114.1	49.4	-2.2	-1.2	0	0	cell wall.pectin*esterases.acetyl esterase	"pectinacetylesterase family protein  similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT4G19410.1); similar to pectinacetylesterase precursor [Vigna radiata var. radiata] (GB:CAA67728.1); contains InterPro domain Pectinacetylesteras"
MSGI1_97276	NODE_9949_length_136_cov_7.411765	2.5	8.1	23.7	20.9	0	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_4109	NODE_995_length_1158_cov_145.670990	98.7	47.1	59.3	50.4	-1.1	0	0	0	cell wall.cellulose synthesis.cellulose synthase	"CESA6 (CELLULASE SYNTHASE 6); transferase, transferring glycosyl groups Encodes a cellulase synthase.  Mutants are defective in hypocotyl elongation dark-grown plants. Normal hypocotyl elongation is restored in plants grown in white, blue or red light. I"
MSGI1_9107	NODE_9951_length_800_cov_27.287500	36	14	0.1	0	0	0	8.5	4.8	not assigned.unknown	not assigned.unknown
MSGI1_18374	NODE_9957_length_532_cov_7.575188	9.9	11.2	0.2	0.1	0	0	0	6.8	not assigned.unknown	not assigned.unknown
MSGI1_43622	NODE_9961_length_275_cov_23.240000	25.7	12.5	5.6	15.3	0	0	2.2	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S12 (RPS12C)  Identical to 40S ribosomal protein S12-2 (RPS12C) [Arabidopsis Thaliana] (GB:Q9SKZ3); similar to 40S ribosomal protein S12 (RPS12A) [Arabidopsis thaliana] (TAIR:AT1G15930.1); similar to Ribosomal protein L7Ae/L30e/S12e/
MSGI1_85130	NODE_9964_length_153_cov_16.915033	21.1	26.8	0.9	0.2	0	0	4.6	7.1	not assigned.unknown	not assigned.unknown
MSGI1_32840	NODE_9968_length_343_cov_28.530613	39.4	2.9	3	0.9	-3.8	0	3.7	0	secondary metabolism.flavonoids.dihydroflavonols	"CYP82C2 (cytochrome P450, family 82, subfamily C, polypeptide 2); oxygen binding member of CYP82C similar to CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31950.1); similar to CYP82C4 (c"
MSGI1_32840	NODE_9968_length_343_cov_28.530613	39.4	2.9	3	0.9	-3.8	0	3.7	0	misc.cytochrome P450	"CYP82C2 (cytochrome P450, family 82, subfamily C, polypeptide 2); oxygen binding member of CYP82C similar to CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31950.1); similar to CYP82C4 (c"
MSGI1_62130	NODE_998_length_202_cov_173.188126	193.2	73.2	165.1	171.8	-1.4	0	0	-1.2	tetrapyrrole synthesis.magnesium chelatase	"CHLI2; magnesium chelatase encodes a second Chl I gene (CHLI2), a subunit of magnesium chelatase which is required for chlorophyll biosynthesis.  Protein not detectable in wild type and is targeted for rapid degradation in vivo. similar to CHLI1 (CHLORIN"
MSGI1_53621	NODE_998_length_231_cov_9.878788	3.9	4.3	25.6	6.7	0	-1.9	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_41157	NODE_9980_length_288_cov_48.590279	7.3	16.9	2.9	1.1	0	0	0	3.9	not assigned.unknown	not assigned.unknown
MSGI1_32157	NODE_9983_length_349_cov_265.283661	39.5	18.9	8	14.9	0	0	2.3	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S23 (RPS23B)  Identical to 40S ribosomal protein S23-2 (S12) (RPS23B) [Arabidopsis Thaliana] (GB:P49201;GB:Q9LYY9); similar to 40S ribosomal protein S23 (RPS23A) [Arabidopsis thaliana] (TAIR:AT3G09680.1); similar to Ribosomal protei
MSGI1_118214	NODE_9984_length_61_cov_209.295074	127.6	84.9	149.2	54.4	0	-1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_49858	NODE_9991_length_246_cov_8.252032	10.3	19.5	0	0	0	0	0	5.3	not assigned.unknown	not assigned.unknown
MSGI1_53861	NODE_9992_length_230_cov_29.200001	17.6	16.5	0.3	0	0	0	5.9	5	not assigned.unknown	not assigned.unknown
MSGI1_10434	TC10004	13.4	37	28.7	53.7	1.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_4627	TC10006	7.6	1.6	70.2	1.7	0	-5.4	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_10315	TC10007	16.3	7.5	29	2.2	0	-3.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_16217	TC10012	9.9	19.8	50.1	3.5	0	-3.8	-2.3	2.5	RNA.regulation of transcription.C2H2 zinc finger family	STZ (SALT TOLERANCE ZINC FINGER); nucleic acid binding / transcription factor/ zinc ion binding Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by
MSGI1_16217	TC10012	9.9	19.8	50.1	3.5	0	-3.8	-2.3	2.5	stress	STZ (SALT TOLERANCE ZINC FINGER); nucleic acid binding / transcription factor/ zinc ion binding Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by
MSGI1_7426	TC10017	17.2	30.5	76.1	52.4	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_7128	TC10025	35.7	37.9	5.2	5.8	0	0	2.8	2.7	not assigned.unknown	not assigned.unknown
MSGI1_4174	TC10028	60	18.6	13.8	18.3	-1.7	0	2.1	0	major CHO metabolism.synthesis.starch.transporter	"AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding mitochondrial ADP/ATP carrier Identical to ADP,ATP carrier protein 1, mitochondrial precursor (ADP/ATP translocase 1) (Adenine nucleotide translocator 1) (ANT 1) (ANT1) [Arabidopsis Thaliana] (GB:P311"
MSGI1_4174	TC10028	60	18.6	13.8	18.3	-1.7	0	2.1	0	transport.metabolite transporters at the envelope membrane	"AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding mitochondrial ADP/ATP carrier Identical to ADP,ATP carrier protein 1, mitochondrial precursor (ADP/ATP translocase 1) (Adenine nucleotide translocator 1) (ANT 1) (ANT1) [Arabidopsis Thaliana] (GB:P311"
MSGI1_4421	TC10029	11	22.2	35	10.4	0	-1.8	-1.7	0	protein.degradation.ubiquitin.E3.RING	ATL6 (Arabidopsis T?xicos en Levadura 6); protein binding / zinc ion binding Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). Identical to RING-H2 finger protein ATL3B precursor (RING-H2 finger protein ATL6) (ATL3B) [Arabidopsis Thaliana] (GB:
MSGI1_9836	TC10031	70	60	30.2	68.6	0	1.2	1.2	0	RNA.regulation of transcription.C2H2 zinc finger family	RNA recognition motif (RRM)-containing protein  similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G22100.1); similar to RNA-binding protein [Gymnadenia conopsea] (GB:ABD66518.1); contains InterPro domain Nucleotide
MSGI1_9836	TC10031	70	60	30.2	68.6	0	1.2	1.2	0	RNA.RNA binding	ATRZ-1A; RNA binding / nucleotide binding Zinc finger-containing glycine-rich  RNA-binding protein. Cold-inducible. Contributes to the enhancement of freezing tolerance. similar to glycine-rich RNA-binding protein [Arabidopsis thaliana] (TAIR:AT5G04280.1
MSGI1_7558	TC10033	11.9	24.8	61.3	9.7	0	-2.7	-2.4	0	stress.abiotic.drought/salt	drought-responsive family protein  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G02750.1); similar to fiber protein Fb2 [Gossypium barbadense] (GB:AAN77145.1); contains InterPro domain Drought induced 19; (InterPro:IPR008598)
MSGI1_11365	TC10037	21.9	2.6	32	0.6	-3.1	-5.7	0	0	hormone metabolism.auxin.synthesis-degradation	"UGT1 (UDP-glucosyl transferase 75B1); UDP-glycosyltransferase/ transferase, transferring glycosyl groups A UDP-glucose transferase localized in the phragmoplast.  It has been co-purified with the callose synthase complex and may transfer UDP-glucose from"
MSGI1_26443	TC10041	6.8	21.7	31.7	20.7	0	0	-2.2	0	protein.degradation.ubiquitin.E3.RING	zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G14200.1); similar to Os03g0324900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049982.1); similar t
MSGI1_79703	TC10042	6	19.1	27.5	15.8	0	0	-2.2	0	protein.degradation.ubiquitin.E3.RING	zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G14200.1); similar to Os03g0324900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049982.1); similar t
MSGI1_5862	TC10045	22.2	48.1	66.9	53.5	0	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_7243	TC10050	48	17.7	17.7	23	-1.4	0	1.4	0	lipid metabolism.FA synthesis and FA elongation.beta hydroxyacyl ACP dehydratase	"beta-hydroxyacyl-ACP dehydratase, putative  similar to beta-hydroxyacyl-ACP dehydratase, putative [Arabidopsis thaliana] (TAIR:AT5G10160.1); similar to 4D11_17 [Brassica rapa subsp. pekinensis] (GB:AAZ67531.1); contains InterPro domain Beta-hydroxyacyl-("
MSGI1_3580	TC10054	9.8	31.2	30.7	6.1	1.7	-2.3	0	2.4	cell wall	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein  similar to protein kinase family protein / peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G23770.1); similar to Os02g0193000 [Oryz
MSGI1_3580	TC10054	9.8	31.2	30.7	6.1	1.7	-2.3	0	2.4	signalling.receptor kinases.lysine motif	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein  similar to protein kinase family protein / peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G23770.1); similar to Os02g0193000 [Oryz
MSGI1_6951	TC10068	8.3	21.3	49.2	20.7	0	0	-2.6	0	cell wall.cellulose synthesis.cellulose synthase	"CESA3 (CELLULASE SYNTHASE 3); cellulose synthase/ transferase, transferring glycosyl groups cellulose synthase. Involved in defense signaling. Identical to Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC 2.4.1.12) (AtCesA-3) (Constitutive expr"
MSGI1_27056	TC10070	1.1	0.4	12.2	109	0	3.2	0	-8.1	signalling.receptor kinases.legume-lectin	"lectin protein kinase, putative  similar to legume lectin family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G65600.1); similar to Protein kinase; Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE89762.1); sim"
MSGI1_15853	TC10071	5.5	2.9	24.1	173.7	0	2.8	-2.1	-5.9	misc.myrosinases-lectin-jacalin	"legume lectin family protein / protein kinase family protein  similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G10530.1); similar to Protein kinase; Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE89762.1); sim"
MSGI1_15853	TC10071	5.5	2.9	24.1	173.7	0	2.8	-2.1	-5.9	protein.postranslational modification	"legume lectin family protein / protein kinase family protein  similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G10530.1); similar to Protein kinase; Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE89762.1); sim"
MSGI1_10085	TC10077	30.8	24.7	60.9	25.4	0	-1.3	0	0	protein.degradation.cysteine protease	"cysteine proteinase A494, putative / thiol protease, putative  Identical to Probable cysteine proteinase A494 precursor (EC 3.4.22.-) [Arabidopsis Thaliana] (GB:P43295;GB:Q9SJT5); similar to RD19 (RESPONSIVE TO DEHYDRATION 19), cysteine-type peptidase [A"
MSGI1_3377	TC1008	180.4	73.2	55.4	62	-1.3	0	1.7	0	cell wall.cell wall proteins.AGPs	FLA10 (fasciclin-like arabinogalactan-protein 10)  Identical to Fasciclin-like arabinogalactan protein 10 precursor (FLA10) [Arabidopsis Thaliana] (GB:Q9LZX4;GB:Q94JM1); similar to FLA8 (Arabinogalactan protein 8) [Arabidopsis thaliana] (TAIR:AT2G45470.1)
MSGI1_32517	TC10086	93.5	42	43.9	46.5	-1.2	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_2992	TC10089	47.1	41.5	71.1	21.9	0	-1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_2897	TC1009	77	38.3	72.3	78.4	-1	0	0	-1	hormone metabolism.ethylene.synthesis-degradation	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT5G59530.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain ATPase, F1/V1/A1 com"
MSGI1_2897	TC1009	77	38.3	72.3	78.4	-1	0	0	-1	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_29876	TC10091	4.7	22.2	10.4	12.5	2.2	0	0	0	cell wall.modification	"XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6); hydrolase, acting on glycosyl bonds xyloglucan endotransglycosylase-related protein (XTR6) Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor (EC 2.4.1.207) (At-XTH23) (XTH-23) ("
MSGI1_29876	TC10091	4.7	22.2	10.4	12.5	2.2	0	0	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6); hydrolase, acting on glycosyl bonds xyloglucan endotransglycosylase-related protein (XTR6) Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor (EC 2.4.1.207) (At-XTH23) (XTH-23) ("
MSGI1_6342	TC10094	8.6	33.6	31.8	14.5	2	0	-1.9	0	RNA.regulation of transcription.GRAS transcription factor family	scarecrow transcription factor family protein  similar to scarecrow-like transcription factor 14 (SCL14) [Arabidopsis thaliana] (TAIR:AT1G07530.1); similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G07520.1); similar
MSGI1_6342	TC10094	8.6	33.6	31.8	14.5	2	0	-1.9	0	development.unspecified	scarecrow transcription factor family protein  similar to scarecrow-like transcription factor 14 (SCL14) [Arabidopsis thaliana] (TAIR:AT1G07530.1); similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G07520.1); similar
MSGI1_9000	TC1010	86.8	41.3	159.9	70.1	-1.1	-1.2	0	0	stress.abiotic.cold	"COR413-PM1 (cold regulated 413 plasma membrane 1) encodes an alpha form of a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. similar to"
MSGI1_5538	TC10103	11.2	19.3	56.5	4.7	0	-3.6	-2.3	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY40 (WRKY DNA-binding protein 40); transcription factor Pathogen-induced transcription factor. Binds W-box sequences  in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more suscept
MSGI1_11364	TC10108	13.2	7.9	41.9	36.2	0	0	-1.7	-2.2	cell wall	similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G48920.1)
MSGI1_6094	TC1011	516.5	269.1	125.1	139.4	0	0	2	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_6094	TC1011	516.5	269.1	125.1	139.4	0	0	2	0	cell wall	"DELTA-TIP (delta tonoplast integral protein); water channel Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by"
MSGI1_6094	TC1011	516.5	269.1	125.1	139.4	0	0	2	0	transport.Major Intrinsic Proteins.TIP	"DELTA-TIP (delta tonoplast integral protein); water channel Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by"
MSGI1_8333	TC10112	10.8	33.9	31.4	42.1	1.7	0	0	0	development.unspecified	"FT (FLOWERING LOCUS T) FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the s"
MSGI1_21961	TC10116	43.9	15.1	33.2	28.4	-1.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_772	TC1012	19.5	24.4	64.4	53.2	0	0	-1.7	-1.1	not assigned.unknown	not assigned.unknown
MSGI1_22915	TC10120	121.6	55.6	197	84.3	-1.1	-1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_44438	TC10123	23.1	16.1	0	0	0	0	5.5	5	not assigned.unknown	not assigned.unknown
MSGI1_3541	TC10128	25.2	46.7	23.3	50.6	0	1.1	0	0	lipid metabolism.lipid degradation.lysophospholipases.carboxylesterase	phospholipase/carboxylesterase family protein  similar to phospholipase/carboxylesterase family protein [Arabidopsis thaliana] (TAIR:AT3G15650.1); similar to Phospholipase/Carboxylesterase [Medicago truncatula] (GB:ABE78991.1); contains InterPro domain Ph
MSGI1_8046	TC10129	66.3	49.5	28.1	60.1	0	1.1	1.2	0	signalling.calcium	"calcium-binding protein, putative  similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G73630.1); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE81417.1); contains InterPro domain EF-Hand type; (InterPro:IPR01199"
MSGI1_18822	TC10130	24.6	0.5	5.5	1.7	-5.6	0	2.2	0	secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase	"CHS (CHALCONE SYNTHASE); naringenin-chalcone synthase Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids.  Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of"
MSGI1_7849	TC10134	2.7	3.9	55.6	59.4	0	0	-4.4	-3.9	not assigned.unknown	not assigned.unknown
MSGI1_11451	TC10138	16	31.1	15	45.7	0	1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_16216	TC1014	98.6	44.8	62.1	78.7	-1.1	0	0	0	protein.synthesis.mito/plastid ribosomal protein.unknown	"50S ribosomal protein L27, chloroplast, putative (RPL27)  Identical to 50S ribosomal protein L27, chloroplast precursor (CL27) (RPL27) [Arabidopsis Thaliana] (GB:Q9FLN4); similar to ribosomal protein L27 family protein [Arabidopsis thaliana] (TAIR:AT5G15"
MSGI1_25234	TC10142	36.6	6.2	13.3	10.7	-2.6	0	1.5	0	amino acid metabolism.synthesis.aspartate family.misc.homoserine.aspartate kinase	AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I); aspartate kinase/ homoserine dehydrogenase Encodes a bifunctional aspartate kinase/homoserine dehydrogenase.  These two activities catalyze the first and the third steps toward the synthesis of the
MSGI1_27730	TC10144	29.5	39.1	46.5	16.2	0	-1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_39549	TC10146	132.8	54.7	127.8	74	-1.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_8999	TC10150	38.1	9.1	24.6	12.5	-2.1	0	0	0	protein.folding	chaperone protein dnaJ-related  similar to Os03g0244000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049532.1); contains domain Cysteine-rich domain of the chaperone protein DnaJ. (SSF57938); contains domain no description (G3D.2.10.230.10)
MSGI1_8999	TC10150	38.1	9.1	24.6	12.5	-2.1	0	0	0	stress.abiotic.heat	chaperone protein dnaJ-related  similar to Os03g0244000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049532.1); contains domain Cysteine-rich domain of the chaperone protein DnaJ. (SSF57938); contains domain no description (G3D.2.10.230.10)
MSGI1_826	TC1016	21.9	58.5	15.1	53.1	1.4	1.8	0	0	cell wall	"protein kinase family protein  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G24240.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G48940.1"
MSGI1_826	TC1016	21.9	58.5	15.1	53.1	1.4	1.8	0	0	signalling.receptor kinases.leucine rich repeat XI	"protein kinase family protein  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G24240.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G48940.1"
MSGI1_6573	TC10160	9.8	27.1	17.7	7.6	0	0	0	1.8	protein.degradation.ubiquitin.E3.SCF.FBOX	"F-box family protein  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G17036.1); similar to Cyclin-like F-box; Long hematopoietin receptor, gp130 family 2 [Medicago truncatula] (GB:ABE78749.1); contains InterPro domain Cyclin-like F-box;"
MSGI1_1316	TC1017	34.2	21.3	34.4	100.9	0	1.6	0	-2.2	cell wall	"SCPL20 (serine carboxypeptidase-like 20); serine carboxypeptidase  similar to SCPL21 (serine carboxypeptidase-like 21), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G25420.1); similar to wound-inducible carboxypeptidase [Lycopersicon esculentu"
MSGI1_1316	TC1017	34.2	21.3	34.4	100.9	0	1.6	0	-2.2	protein.degradation.serine protease	"SCPL20 (serine carboxypeptidase-like 20); serine carboxypeptidase  similar to SCPL21 (serine carboxypeptidase-like 21), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G25420.1); similar to wound-inducible carboxypeptidase [Lycopersicon esculentu"
MSGI1_17992	TC10170	41.4	22	15.7	32.8	0	0	1.4	0	hormone metabolism.auxin.induced-regulated-responsive-activated	AIR12 (Auxin-Induced in Root cultures 12); extracellular matrix structural constituent isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be ex
MSGI1_7986	TC10178	44.5	9.2	14.9	11.3	-2.3	0	1.6	0	lipid metabolism.Phospholipid synthesis	ATGPAT4/GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase Encodes a protein with glycerol-3-phosphate acyltransferase activity. Identical to Glycerol-3-phosphate acyltransferase 4 (EC 2.3.1.15)
MSGI1_13014	TC10182	16.5	51.5	15.8	25.6	1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_33661	TC10189	0	0	10.7	11.4	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_1924	TC1019	17.4	29	46.9	40.8	0	0	-1.4	0	stress.abiotic.cold	C2 domain-containing protein  similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G50570.2); similar to C2 [Medicago truncatula] (GB:ABE81465.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/l
MSGI1_34026	TC10193	66.8	176.6	135.7	31.3	1.4	-2.1	0	2.5	signalling.calcium	"calcium-binding EF hand family protein  similar to PBP1 (PINOID-BINDING PROTEIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G54490.1); similar to Avr9/Cf-9 rapidly elicited protein 20 [Nicotiana tabacum] (GB:AAV92890.1); contains InterPro dom"
MSGI1_21481	TC10197	0	0	8.7	12.7	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_42526	TC102	386.9	338.2	3.1	1.2	0	0	7	8.1	PS.photorespiration.glycolate oxydase	"(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative  Identical to Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 (EC 1.1.3.15) (Glycolate oxidase 2) (GOX 2) (Short chain al"
MSGI1_27394	TC10201	18.2	23.3	9.1	28.4	0	1.6	0	0	RNA.regulation of transcription.zf-HD	"ATHB34 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 34); DNA binding / transcription factor  similar to ATHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G39760.1); similar to Homeobox domain,"
MSGI1_4682	TC10219	519.6	282.4	176.3	344.7	0	1	1.6	0	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L5 (RPL5B)  Identical to 60S ribosomal protein L5-2 (RPL5B) [Arabidopsis Thaliana] (GB:P49227;GB:Q41921); similar to ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G25520."
MSGI1_11363	TC10221	141.6	80.1	51.4	99.9	0	1	1.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L9 (RPL90A/C)  Identical to 60S ribosomal protein L9-1 (RPL9C) [Arabidopsis Thaliana] (GB:P49209;GB:Q9LDX2); similar to 60S ribosomal protein L9 (RPL90B) [Arabidopsis thaliana] (TAIR:AT1G33120.1); similar to unknown [Solanum tuberos
MSGI1_7970	TC10227	10.2	31.4	38	9.9	1.6	-1.9	-1.9	1.7	not assigned.unknown	not assigned.unknown
MSGI1_13013	TC10229	106.7	71.5	51.5	50.6	0	0	1.1	0	DNA.synthesis/chromatin structure.histone	"histone H2A.F/Z  Identical to Histone H2A variant 1 (H2A.F/Z 1) (HTA11) (H2AvAt) (H2AV) [Arabidopsis Thaliana] (GB:O23628); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT2G38810.2); similar to Os03g0162200 [Oryza sativa (japonica cultiv"
MSGI1_9790	TC10233	34.3	27.3	50.7	64.8	0	0	0	-1.2	misc.misc2	"dienelactone hydrolase family protein  similar to dienelactone hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G23570.1); similar to 'putative endo-1,3;1,4-beta-D-glucanase' [Oryza sativa (japonica cultivar-group)] (GB:AAU10802.1); similar to Os"
MSGI1_4937	TC10239	67.6	18.5	55.6	25.5	-1.9	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_4937	TC10239	67.6	18.5	55.6	25.5	-1.9	0	0	0	hormone metabolism.ethylene.synthesis-degradation	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT5G59530.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain ATPase, F1/V1/A1 com"
MSGI1_3992	TC10240	34.3	31.3	24.3	5.9	0	-2	0	2.4	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY30 (WRKY DNA-binding protein 30); transcription factor member of WRKY Transcription Factor; Group III Identical to Probable WRKY transcription factor 30 (WRKY DNA-binding protein 30) (WRKY30) [Arabidopsis Thaliana] (GB:Q9FL62); similar to WRKY53 (WRK
MSGI1_3664	TC10249	14.7	19	71.5	30.7	0	-1.2	-2.3	0	development.unspecified	"ACD1 (ACCELERATED CELL DEATH 1, PHEOPHORBIDE A OXYGENASE) Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato"
MSGI1_2343	TC10255	7.7	32.4	29.3	47.1	2.1	0	-1.9	0	major CHO metabolism.degradation.starch.starch cleavage	"AMY2/ATAMY2 (ALPHA-AMYLASE-LIKE 2); alpha-amylase alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic doma"
MSGI1_10113	TC10259	53.5	16.7	28.8	31.7	-1.7	0	0	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"30S ribosomal protein S10, chloroplast, putative  Identical to 30S ribosomal protein S10, chloroplast precursor (RPS10) [Arabidopsis Thaliana] (GB:Q9LK61); similar to 30S ribosomal protein S10-like [Brassica napus] (GB:AAW22623.1); contains InterPro doma"
MSGI1_6139	TC10266	58	36.3	23	37.4	0	0	1.3	0	Co-factor and vitamine metabolism.riboflavin.riboflavin synthase	"COS1 (COI1 SUPPRESSOR1); 6,7-dimethyl-8-ribityllumazine synthase 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase [Arabidopsis thaliana]. Identical to 6,7-dimethyl-8-ribityllumazine synthase, chloroplast p"
MSGI1_3387	TC10267	22.4	9.8	4.4	23.4	0	2.4	2.3	0	protein.degradation.aspartate protease	aspartyl protease family protein  similar to pepsin A [Arabidopsis thaliana] (TAIR:AT1G62290.2); similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT4G04460.1); similar to aspartic protease (GB:AAB03108.1); similar to Aspartic prot
MSGI1_1578	TC1027	199.5	93	104.8	123.3	-1.1	0	0	0	cell wall.precursor synthesis.AXS	AXS1 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 1) Encodes UDP-d-apiose/UDP-d-xylose synthase that requires NAD+ for enzymatic activity and is strongly inhibited by UDP-d-galacturonate. similar to AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2) [Arabidopsis thalian
MSGI1_8297	TC10279	15.6	39.3	14.9	61.2	0	2	0	0	misc.cytochrome P450	"CYP94C1 (cytochrome P450, family 94, subfamily C, polypeptide 1); oxygen binding member of CYP94C similar to CYP94B3 (cytochrome P450, family 94, subfamily B, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G48520.1); similar to cytochrome"
MSGI1_656	TC1028	19.6	19.3	72.9	22.8	0	-1.7	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_6263	TC10285	12.7	10.3	36.5	7.6	0	-2.3	-1.5	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"TINY2 (TINY2); DNA binding / transcription factor encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. similar to TNY (TINY), DNA bi"
MSGI1_13432	TC10291	22.4	21.7	57.6	20.5	0	-1.5	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_12927	TC10293	306.9	160.3	80.8	194.6	0	1.3	1.9	0	protein.synthesis.misc ribososomal protein	EMB2171 (EMBRYO DEFECTIVE 2171); structural constituent of ribosome  Identical to 60S ribosomal protein L23 (RPL23C) [Arabidopsis Thaliana] (GB:P49690;GB:Q8L8P0;GB:Q9SDB5); similar to 60S ribosomal protein L23 (RPL23A) [Arabidopsis thaliana] (TAIR:AT1G044
MSGI1_12733	TC10299	48.1	45.3	41	16.7	0	0	0	1.4	misc.glutathione S transferases	ATGSTU8 (Arabidopsis thaliana Glutathione S-transferase (class tau) 8); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU7 (GLUTATHIONE S-TRA
MSGI1_31010	TC103	34.4	4.4	23.4	18.8	-3	0	0	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	"CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding Subunit of light-harvesting complex II (LHCII),which absorbs light and transfers energy to the photosynthetic reaction center. Identical to Chlorophyll a-b binding protein 2, chloroplast precu"
MSGI1_18897	TC10304	45	62.5	18.9	35.8	0	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_4636	TC10306	76.8	58	38.2	46.6	0	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_5829	TC10308	111.6	87.2	49.3	102.1	0	1.1	1.2	0	cell wall	"osmotin-like protein, putative  similar to pathogenesis-related thaumatin family protein [Arabidopsis thaliana] (TAIR:AT1G75800.1); similar to thaumatin-like cytokinin-binding protein [Brassica oleracea] (GB:AAO12209.1); contains InterPro domain Thaumati"
MSGI1_5829	TC10308	111.6	87.2	49.3	102.1	0	1.1	1.2	0	stress.abiotic	"osmotin-like protein, putative  similar to pathogenesis-related thaumatin family protein [Arabidopsis thaliana] (TAIR:AT1G75800.1); similar to thaumatin-like cytokinin-binding protein [Brassica oleracea] (GB:AAO12209.1); contains InterPro domain Thaumati"
MSGI1_2494	TC1031	41.6	145.5	72	127	1.8	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_2494	TC1031	41.6	145.5	72	127	1.8	0	0	0	transport.sulphate	"AST91 (SULFATE TRANSPORTER 91); sulfate transporter Encodes AST91 mRNA for sulfate transporter. Identical to Probable sulfate transporter 3.3 (AST91) (SULTR3;3) [Arabidopsis Thaliana] (GB:Q9SXS2;GB:O49307); similar to SULTR3,4 (SULTR3,4), sulfate transpo"
MSGI1_7827	TC10312	18.4	30.6	54.1	45.1	0	0	-1.6	0	RNA.regulation of transcription.unclassified	zinc finger (DNL type) family protein  similar to zinc finger (DNL type) family protein [Arabidopsis thaliana] (TAIR:AT1G68730.1); similar to Os06g0724400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058612.1); similar to unknown protein [Oryza sat
MSGI1_3503	TC10316	17.2	28.8	62	30.9	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_7713	TC10328	57.7	23.6	35.2	42.6	-1.3	0	0	0	protein.synthesis.misc ribososomal protein	"RPS9 (RIBOSOMAL PROTEIN S9); structural constituent of ribosome ribosomal protein S9, nuclear encoded component of the chloroplast ribosome Identical to 30S ribosomal protein S9, chloroplast precursor (RPS9) [Arabidopsis Thaliana] (GB:Q9XJ27); similar to"
MSGI1_1912	TC10332	31.5	14	23.8	3.7	0	-2.7	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_1912	TC10332	31.5	14	23.8	3.7	0	-2.7	0	0	metal handling.acquisition	"FRD3 (FERRIC REDUCTASE DEFECTIVE 3); antiporter Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even unde"
MSGI1_15894	TC10345	204.3	75.4	48.7	56.5	-1.4	0	2.1	0	cell.organisation	"ACT11 (ACTIN-11); structural constituent of cytoskeleton Encodes an actin that is expressed predominantly during reproductive development. Identical to Actin-11 (ACT11) [Arabidopsis Thaliana] (GB:P53496); similar to ACT3 (ACTIN 3), structural constituent"
MSGI1_11181	TC10356	5.1	11.7	47.1	9.1	0	-2.4	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_10030	TC10361	5.9	15.6	24.1	12.7	0	0	-2	0	stress.biotic.respiratory burst	"respiratory burst oxidase protein E (RbohE) / NADPH oxidase  similar to respiratory burst oxidase, putative / NADPH oxidase, putative [Arabidopsis thaliana] (TAIR:AT4G11230.1); similar to RBOHD (RESPIRATORY BURST OXIDASE PROTEIN D) [Arabidopsis thaliana]"
MSGI1_13280	TC10366	228.5	644.2	638.3	1200.4	1.5	0	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_327	TC10368	20	28.4	5.5	8	0	0	0	1.8	RNA.regulation of transcription.WRKY domain transcription factor family	TTR1 (WRKY domain family protein 16); transcription factor Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. Identical to Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16)
MSGI1_327	TC10368	20	28.4	5.5	8	0	0	0	1.8	stress.biotic	"disease resistance protein (NBS-LRR class), putative  Identical to Putative disease resistance RPP13-like protein 1 (RPPL1) [Arabidopsis Thaliana] (GB:Q9LRR4); similar to disease resistance protein (NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:A"
MSGI1_6137	TC1038	32.8	89.8	81.3	62.6	1.5	0	-1.3	0	RNA.regulation of transcription.MYB-related transcription factor family	myb family transcription factor  similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT3G16350.1); similar to myb family transcription factor [Brassica oleracea] (GB:ABD65013.1); contains InterPro domain Homeodomain-related; (InterPro
MSGI1_11123	TC1039	15.6	46.2	43.4	33.4	1.6	0	-1.5	0	RNA.regulation of transcription.MYB-related transcription factor family	myb family transcription factor  similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT3G16350.1); similar to myb family transcription factor [Brassica oleracea] (GB:ABD65013.1); contains InterPro domain Homeodomain-related; (InterPro
MSGI1_22841	TC10391	10.7	20.2	2.4	2.1	0	0	0	3.3	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G17680.1); similar to TIR-NBS type disease resistance protein [Populus trichocarpa] (GB:ABF81459"
MSGI1_13579	TC10396	14.2	11.7	50.3	18.5	0	-1.4	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_11266	TC10398	5.1	10.4	69.1	6.5	0	-3.4	-3.8	0	cell wall	"MYB20 (myb domain protein 20); DNA binding / transcription factor Encodes a putative transcription factor (MYB20). similar to MYB43 (myb domain protein 43), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G16600.1); similar to myb-rela"
MSGI1_11266	TC10398	5.1	10.4	69.1	6.5	0	-3.4	-3.8	0	RNA.regulation of transcription.MYB domain transcription factor family	"MYB20 (myb domain protein 20); DNA binding / transcription factor Encodes a putative transcription factor (MYB20). similar to MYB43 (myb domain protein 43), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G16600.1); similar to myb-rela"
MSGI1_7149	TC10406	30.6	129.2	112.8	69.1	2.1	0	-1.9	0	development.unspecified	TET7 (TETRASPANIN7) Member of TETRASPANIN family similar to TET8 (TETRASPANIN8) [Arabidopsis thaliana] (TAIR:AT2G23810.1); similar to senescence-associated protein 5 [Hemerocallis hybrid cultivar] (GB:AAC34855.1); contains InterPro domain CD9/CD37/CD63 an
MSGI1_6556	TC10409	39.8	61.4	84	58	0	0	-1.1	0	cell. vesicle transport	ATVAMP727 (Arabidopsis thaliana vesicle-associated membrane protein 727) member of Synaptobrevin -like protein family Identical to Vesicle-associated membrane protein 727 (AtVAMP727) (VAMP727) [Arabidopsis Thaliana] (GB:Q9M376;GB:Q53XE0); similar to ATVAM
MSGI1_6640	TC1041	40.9	51.1	33.4	12.7	0	0	0	2	not assigned.unknown	not assigned.unknown
MSGI1_9959	TC10427	45.5	2.6	14.9	3.6	-4.1	0	1.6	0	hormone metabolism.gibberelin.induced-regulated-responsive-activated	gibberellin-regulated family protein  similar to ATEPR1 (Arabidopsis thaliana extensin proline-rich 1) [Arabidopsis thaliana] (TAIR:AT2G27380.1); similar to hypothetical protein [Brassica napus var. napus] (GB:AAS68179.1); contains InterPro domain Pistil-
MSGI1_9959	TC10427	45.5	2.6	14.9	3.6	-4.1	0	1.6	0	cell wall	gibberellin-regulated family protein  similar to ATEPR1 (Arabidopsis thaliana extensin proline-rich 1) [Arabidopsis thaliana] (TAIR:AT2G27380.1); similar to hypothetical protein [Brassica napus var. napus] (GB:AAS68179.1); contains InterPro domain Pistil-
MSGI1_20097	TC10428	28.4	64.5	42.5	34.1	1.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_6114	TC1043	105.2	81.5	20	54.9	0	1.5	2.4	0	stress.biotic	"transferase family protein  similar to CHAT (ACETYL COA:(Z)-3-HEXEN-1-OL ACETYLTRANSFERASE), acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase [Arabidopsis thaliana] (TAIR:AT3G03480.1); similar to benzoyl coenzyme A: benzyl alcohol benzoyl transferase [Petun"
MSGI1_4457	TC10431	50.4	42.5	21.3	22.1	0	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_9028	TC10432	40	25.7	12.4	20.6	0	0	1.7	0	RNA.regulation of transcription.TCP transcription factor family	"TCP family transcription factor, putative  similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT5G08330.1); similar to unknown [Brassica rapa] (GB:ABB97033.1); contains InterPro domain TCP transcription factor; (InterPro:IP"
MSGI1_8296	TC10435	4.7	9.4	30.1	24.6	0	0	-2.7	0	transport.misc	MATE efflux protein-related  similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT2G34360.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G73700.1); similar to Os04g0373400 [Oryza sativa (japonica cultivar-group)
MSGI1_11074	TC10441	25.7	9.1	33.5	4.1	0	-3	0	0	"metal handling.binding, chelation and storage"	copper-binding family protein  similar to ATFP3 (Arabidopsis thaliana farnesylated protein 3) [Arabidopsis thaliana] (TAIR:AT5G63530.2); similar to PPAK motif; Heavy metal transport/detoxification protein [Medicago truncatula] (GB:ABE84491.1); contains In
MSGI1_11720	TC10443	21.6	17.1	44.3	14.5	0	-1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_11855	TC10455	405.9	2.2	146.7	8.9	-7.5	-4	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_8256	TC10456	82.2	43.2	20.7	52.4	0	1.3	2	0	stress.biotic	trypsin and protease inhibitor family protein / Kunitz family protein  similar to trypsin and protease inhibitor family protein / Kunitz family protein [Arabidopsis thaliana] (TAIR:AT1G73260.1); similar to Lemir [Lycopersicon esculentum] (GB:AAC63057.1);
MSGI1_18690	TC10465	82.4	44.8	79	34.8	0	-1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_7647	TC10466	30.8	4.1	31.1	1.4	-2.9	-4.5	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	"mannitol dehydrogenase, putative  Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G2"
MSGI1_11122	TC10468	23.2	27.5	74.4	20.4	0	-1.9	-1.7	0	stress.abiotic.drought/salt	"ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis. similar to senescence/dehydration-associated protein-"
MSGI1_11122	TC10468	23.2	27.5	74.4	20.4	0	-1.9	-1.7	0	development.unspecified	"ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis. similar to senescence/dehydration-associated protein-"
MSGI1_11073	TC10471	95.3	50.3	28.8	24.9	0	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_26240	TC10475	65.6	23.7	1838.4	193.2	-1.5	-3.3	-4.8	-3	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT5G05960.1); similar to Os01g0849000 [Oryza sativa (japonica
MSGI1_10720	TC10480	22.2	18.1	2.8	10.7	0	0	3	0	cell wall.degradation.pectate lyases and polygalacturonases	"PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding polygalacturonase inhibiting protein 1 (PGIP1) mRNA, Identical to Polygalacturonase inhibitor 1 precursor (Polygalacturonase-inhibiting protein) (PGIP-1) (PGIP1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_6869	TC10481	5.6	14.8	37.4	12.2	0	-1.6	-2.7	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_6869	TC10481	5.6	14.8	37.4	12.2	0	-1.6	-2.7	0	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G17680.1); similar to TIR-NBS type disease resistance protein [Populus trichocarpa] (GB:ABF81459"
MSGI1_13578	TC10482	51.8	114.9	44.9	62.5	1.1	0	0	0	development.unspecified	senescence-associated protein-related  similar to senescence-associated protein-related [Arabidopsis thaliana] (TAIR:AT1G22160.1); similar to Os06g0223700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057184.1); similar to unknown protein [Oryza sati
MSGI1_8607	TC10483	23.9	0.1	6.7	2.1	-7.9	0	0	0	cell wall	GLP3 (GERMIN-LIKE PROTEIN 3); manganese ion binding / metal ion binding / nutrient reservoir Encodes a germin-like protein. Identical to Germin-like protein subfamily 3 member 3 precursor (AtGER3) (AtGLP2) (GER3) [Arabidopsis Thaliana] (GB:P94072;GB:P940
MSGI1_8607	TC10483	23.9	0.1	6.7	2.1	-7.9	0	0	0	stress.abiotic.unspecified	GLP3 (GERMIN-LIKE PROTEIN 3); manganese ion binding / metal ion binding / nutrient reservoir Encodes a germin-like protein. Identical to Germin-like protein subfamily 3 member 3 precursor (AtGER3) (AtGLP2) (GER3) [Arabidopsis Thaliana] (GB:P94072;GB:P940
MSGI1_2347	TC10488	2.1	34.2	9	29.3	4	1.7	0	0	metal handling.acquisition	"ATFRO8/FRO8 (FERRIC REDUCTION OXIDASE 8); ferric-chelate reductase/ oxidoreductase Encodes a ferric chelate reductase that is expressed in shoots and flowers. similar to FRO1 (FERRIC REDUCTION OXIDASE 1), ferric-chelate reductase [Arabidopsis thaliana] ("
MSGI1_7777	TC10489	54.3	65.6	113.2	92.4	0	0	-1.1	0	cell wall	"leucine-rich repeat protein, putative  similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G43740.1); similar to Leucine-rich repeat, plant specific [Medicago truncatula] (GB:ABE82625.1); contains InterPro domain Leucine-rich re"
MSGI1_8045	TC10498	72.4	20.6	37.8	31.2	-1.8	0	0	0	redox.ascorbate and glutathione.ascorbate	"APX4 (ASCORBATE PEROXIDASE 4); peroxidase Encodes a microsomal ascorbate peroxidase APX4.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, A"
MSGI1_9627	TC10502	6.4	9	49	8.4	0	-2.5	-2.9	0	transport.ABC transporters and multidrug resistance systems	ABC transporter family protein  Identical to White-brown complex homolog protein 26 (WBC26) [Arabidopsis Thaliana] (GB:Q84TH5;GB:Q949Y4;GB:Q9C8W6); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G31770.1); similar to ABC transp
MSGI1_4278	TC10504	33.4	46.3	33.7	80.8	0	1.3	0	0	protein.degradation	ATP-dependent protease La (LON) domain-containing protein  similar to ATP-dependent protease La (LON) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G19740.1); similar to Os07g0509700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059749.1
MSGI1_19812	TC10506	27	342.6	37	248.3	3.7	2.7	0	0	cell wall	"RALFL1 (RALF-LIKE 1) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exo"
MSGI1_19812	TC10506	27	342.6	37	248.3	3.7	2.7	0	0	signalling.misc	"RALFL1 (RALF-LIKE 1) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exo"
MSGI1_18441	TC10508	16.8	16.5	67.1	12.3	0	-2.4	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_855	TC1052	9.9	35.3	62.2	19.8	1.8	-1.7	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_20096	TC10537	23.5	27.8	62.4	29.6	0	0	-1.4	0	misc.short chain dehydrogenase/reductase (SDR)	short-chain dehydrogenase/reductase (SDR) family protein  similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G04900.1); similar to Os01g0227100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042468.1);
MSGI1_37559	TC10538	7.5	15.2	30.6	7.7	0	-2	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_752	TC1054	44	111.7	61.6	139.3	1.3	1.2	0	0	transport.amino acids	amino acid transporter family protein  similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT5G38820.1); similar to Os06g0633800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058132.1); similar to putative N system amino ac
MSGI1_10655	TC10540	2.6	2.6	59.9	59.1	0	0	-4.5	-4.5	RNA.regulation of transcription.unclassified	zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein  similar to programmed cell death 2 C-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G64830.1); similar to PREDICTED: similar to pro
MSGI1_4754	TC10554	127.3	63.6	233.8	182.4	0	0	0	-1.5	protein.degradation.cysteine protease	"XCP2 (XYLEM CYSTEINE PEPTIDASE 2); cysteine-type peptidase/ peptidase  Identical to Xylem cysteine proteinase 2 precursor (EC 3.4.22.-) (AtXCP2) (XCP2) [Arabidopsis Thaliana] (GB:Q9LM66;GB:Q9SYQ2); similar to XCP1 (XYLEM CYSTEINE PEPTIDASE 1), cysteine-t"
MSGI1_12989	TC10559	9.4	2.6	51.6	4.4	0	-3.6	-2.5	0	protein.degradation	"latex-abundant protein, putative (AMC9) / caspase family protein  similar to latex abundant protein, putative (AMC5) / caspase family protein [Arabidopsis thaliana] (TAIR:AT1G79320.1); similar to Peptidase C14, caspase catalytic subunit p20 [Medicago tru"
MSGI1_4986	TC1056	61.9	28.7	83.8	58	-1.1	0	0	0	major CHO metabolism.synthesis.sucrose.FBPase	"fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative  Identical to Fructose-1,6-bisphosphatase, cytosolic (EC 3.1.3.11) (D-fructose-1,6- bisphosphate 1-phosphohydrolase) (FBPase) [Arabidopsis"
MSGI1_55162	TC10560	12	12.3	0.7	2.8	0	0	4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_38548	TC10563	28.3	5.5	20.3	8.1	-2.4	0	0	0	signalling.calcium	"IQD33 (IQ-domain 33); calmodulin binding  similar to IQD3 (IQ-domain 3), calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G52290.1); similar to IQD4 (IQ-domain 4), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G26410.1); similar to Os05g0123200 [O"
MSGI1_9768	TC10572	1.3	9	34.3	3.2	0	-3.4	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_25830	TC10591	7.6	8.5	40	13.6	0	-1.6	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_14244	TC10599	53.6	38.6	19.8	38.7	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_13126	TC106	419.7	148.8	11.4	21	-1.5	0	5.2	2.8	PS.lightreaction.photosystem II.PSII polypeptide subunits	"CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding Subunit of light-harvesting complex II (LHCII),which absorbs light and transfers energy to the photosynthetic reaction center. Identical to Chlorophyll a-b binding protein 2, chloroplast precu"
MSGI1_5856	TC10617	12.3	23.3	115	62.7	0	0	-3.2	-1.4	stress.biotic	"secretory protein, putative  similar to plant basic secretory protein (BSP) family protein [Arabidopsis thaliana] (TAIR:AT2G15130.1); similar to NtPRp27 [Nicotiana tabacum] (GB:BAA81904.1); contains InterPro domain Plant Basic Secretory Protein; (InterPr"
MSGI1_27309	TC1062	748.1	2452.5	1317.2	3336.3	1.7	1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_57056	TC1063	175	775.6	427.5	1378.4	2.1	1.7	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_1873	TC10639	33.9	9.7	12.5	3.6	-1.8	0	0	0	cell wall.degradation.pectate lyases and polygalacturonases	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT3G06770.2); similar to polygalacturonase-
MSGI1_16524	TC10640	16	21.4	87.3	4.5	0	-4.3	-2.4	2.2	stress.abiotic.unspecified	SAG21 (SENESCENCE-ASSOCIATED GENE 21) Encodes AtLEA5 (late embryogenesis abundant like protein).  Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21).  Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses. sim
MSGI1_16524	TC10640	16	21.4	87.3	4.5	0	-4.3	-2.4	2.2	development.late embryogenesis abundant	SAG21 (SENESCENCE-ASSOCIATED GENE 21) Encodes AtLEA5 (late embryogenesis abundant like protein).  Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21).  Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses. sim
MSGI1_20146	TC10653	3.5	20.2	3.3	7.1	2.5	0	0	0	transport.ABC transporters and multidrug resistance systems	"P-glycoprotein, putative  Identical to Putative multidrug resistance protein 21 (P-glycoprotein 22) (MDR21) [Arabidopsis Thaliana] (GB:Q9LSJ2); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G28345.1); similar to PGP18 (P-GLYCO"
MSGI1_2815	TC1066	24.4	47.7	52.9	95	0	0	0	-1	C1-metabolism	"FDH (FORMATE DEHYDROGENASE); NAD binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor Encodes a NAD-dependent formate dehydrogenase. Identical to Formate dehydrogenase, mitochondrial precursor (EC 1.2."
MSGI1_7480	TC10660	8	17.4	2.8	2.3	0	0	0	2.9	not assigned.unknown	not assigned.unknown
MSGI1_13956	TC10667	8.2	6	49.7	10.1	0	-2.3	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_6868	TC10672	1.6	28.4	11.3	14.8	4.1	0	0	0	"RNA.regulation of transcription.HSF,Heat-shock transcription factor family"	AT-HSFA6B (Arabidopsis thaliana heat shock transcription factor A6B); DNA binding / transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor A-6b (AtHsfA6b) (HSFA6b) [Arabidopsis Thaliana]
MSGI1_6868	TC10672	1.6	28.4	11.3	14.8	4.1	0	0	0	stress.abiotic.heat	AT-HSFA6B (Arabidopsis thaliana heat shock transcription factor A6B); DNA binding / transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor A-6b (AtHsfA6b) (HSFA6b) [Arabidopsis Thaliana]
MSGI1_2686	TC10679	16.5	0.5	5.6	13.8	-5	0	0	-4.8	misc.cytochrome P450	"CYP716A1 (cytochrome P450, family 716, subfamily A, polypeptide 1); oxygen binding member of CYP716A similar to CYP716A2 (cytochrome P450, family 716, subfamily A, polypeptide 2), heme binding / iron ion binding / monooxygenase [Arabidopsis thaliana] (TA"
MSGI1_1938	TC1069	12.8	36.6	30.9	30.5	1.5	0	0	0	transport.potassium	"potassium transporter, putative  Identical to Potassium transporter 8 (AtPOT8) (AtHAK8) (POT8) [Arabidopsis Thaliana] (GB:Q9M7J9;GB:Q9LEQ2); similar to KT2 (POTASSIUM TRANSPORTER 2) [Arabidopsis thaliana] (TAIR:AT2G40540.2); similar to KUP3 (K+ uptake pe"
MSGI1_9188	TC10690	10.7	13.8	36.6	14.3	0	0	-1.8	0	cell. vesicle transport	"VAM3 (syntaxin 22); t-SNARE Syntaxin-related protein required for vacuolar assembly. A member of t-SNARE superfamily, homologous to yest Vam3p. Localized in the vacuolar membranes. The protein has a heptad repeat structure (residues164?220) in which hydr"
MSGI1_3395	TC10691	12.3	9.4	38.6	9.6	0	-2	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_13052	TC10698	0	0	47.3	47.7	0	0	-6.6	-6.6	protein.degradation.cysteine protease	SEC-C motif-containing protein / OTU-like cysteine protease family protein  similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT2G27350.3); similar to H0624F09.2 [Oryza sativa (indica cultivar-group)] (GB:CAH67694.1); simi
MSGI1_24832	TC10700	79.1	55.7	18.1	45.3	0	1.3	2.1	0	stress.biotic	"transferase family protein  similar to CHAT (ACETYL COA:(Z)-3-HEXEN-1-OL ACETYLTRANSFERASE), acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase [Arabidopsis thaliana] (TAIR:AT3G03480.1); similar to benzoyl coenzyme A: benzyl alcohol benzoyl transferase [Petun"
MSGI1_12731	TC10706	164.7	78.1	162	188.7	-1.1	0	0	-1.3	PS.lightreaction.photosystem I.PSI polypeptide subunits	"TMP14 (THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA) Encodes the P subunit of Photosystem I. About 25% of the TMP14 pool appeared to be phosphorylated, and this ratio is not affected by light. Contains seven phosphorylation sites on threonine residue and"
MSGI1_4139	TC10709	35	26.5	91.3	28.1	0	-1.7	-1.4	0	protein.synthesis.mito/plastid ribosomal protein.unknown	"30S ribosomal protein, putative  similar to chloroplast-specific ribosomal protein [Lycopersicon esculentum] (GB:AAU03364.1); contains InterPro domain Rudiment single hybrid motif; (InterPro:IPR011054); contains InterPro domain Sigma 54 modulation protei"
MSGI1_12577	TC10712	8.9	5.1	30.6	15.2	0	0	-1.8	0	cell wall	"CYP82C2 (cytochrome P450, family 82, subfamily C, polypeptide 2); oxygen binding member of CYP82C similar to CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31950.1); similar to CYP82C4 (c"
MSGI1_12577	TC10712	8.9	5.1	30.6	15.2	0	0	-1.8	0	cell wall	"CYP82C2 (cytochrome P450, family 82, subfamily C, polypeptide 2); oxygen binding member of CYP82C similar to CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31950.1); similar to CYP82C4 (c"
MSGI1_12577	TC10712	8.9	5.1	30.6	15.2	0	0	-1.8	0	secondary metabolism.flavonoids.dihydroflavonols	"CYP82C2 (cytochrome P450, family 82, subfamily C, polypeptide 2); oxygen binding member of CYP82C similar to CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31950.1); similar to CYP82C4 (c"
MSGI1_12577	TC10712	8.9	5.1	30.6	15.2	0	0	-1.8	0	misc.cytochrome P450	"CYP82C2 (cytochrome P450, family 82, subfamily C, polypeptide 2); oxygen binding member of CYP82C similar to CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31950.1); similar to CYP82C4 (c"
MSGI1_20145	TC10717	4.9	18.5	35.1	23.4	0	0	-2.8	0	"misc.gluco-, galacto- and mannosidases"	"glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT4G22100.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE85054.1); contains InterPro domain 6-phospho-beta-galacto"
MSGI1_17461	TC10720	48.7	11.8	11.1	6.7	-2	0	2.1	0	"metal handling.binding, chelation and storage"	"MTO3 (S-adenosylmethionine synthase 3); methionine adenosyltransferase S-adenosylmethionine synthetase similar to SAM1 (S-adenosylmethionine synthetase 1), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT1G02500.2); similar to MAT2/SAM-2 (S"
MSGI1_17461	TC10720	48.7	11.8	11.1	6.7	-2	0	2.1	0	amino acid metabolism.synthesis.aspartate family.methionine.S-adenosylmethionine synthetase	"MTO3 (S-adenosylmethionine synthase 3); methionine adenosyltransferase S-adenosylmethionine synthetase similar to SAM1 (S-adenosylmethionine synthetase 1), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT1G02500.2); similar to MAT2/SAM-2 (S"
MSGI1_4194	TC1073	45	43.7	96	45.2	0	-1.1	-1.1	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_4194	TC1073	45	43.7	96	45.2	0	-1.1	-1.1	0	hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate oxidase	EFE (ethylene forming enzyme) Encodes 1-aminocyclopropane-1-carboxylate oxidase Identical to 1-aminocyclopropane-1-carboxylate oxidase (EC 1.14.17.4) (ACC oxidase) (Ethylene-forming enzyme) (EFE) (ACO) [Arabidopsis Thaliana] (GB:Q06588;GB:Q94K94;GB:Q9S9K
MSGI1_13469	TC10732	1.8	7.9	16.1	68.2	0	2.1	-3.2	-3.1	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_13469	TC10732	1.8	7.9	16.1	68.2	0	2.1	-3.2	-3.1	development.unspecified	"nodulin, putative  similar to nodulin, putative [Arabidopsis thaliana] (TAIR:AT3G43630.1); similar to H0701F11.2 [Oryza sativa (indica cultivar-group)] (GB:CAJ86136.1); contains InterPro domain Protein of unknown function DUF125, transmembrane; (InterPro"
MSGI1_12217	TC1074	39.8	229.1	68.2	38.9	2.5	0	0	2.6	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"ethylene-responsive element-binding family protein encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1,"
MSGI1_12217	TC1074	39.8	229.1	68.2	38.9	2.5	0	0	2.6	hormone metabolism.ethylene.signal transduction	"ethylene-responsive element-binding family protein encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1,"
MSGI1_3843	TC10744	32.4	38.8	25.6	60.6	0	1.2	0	0	hormone metabolism.ethylene.synthesis-degradation	"D-CDES (D-CYSTEINE DESULFHYDRASE); 1-aminocyclopropane-1-carboxylate deaminase/ D-cysteine desulfhydrase/ catalytic Encodes an enzyme that decomposes D-cysteine into pyruvate, H2S, and NH3.  Only D-cysteine but not L-cysteine was converted by D-CDes to p"
MSGI1_6994	TC10747	133.2	81	70.8	38	0	0	0	1.1	RNA.regulation of transcription.putative transcription regulator	"transcription factor LIM, putative  similar to LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G39900.1); similar to LIM-domain protein [Brassica napus] (GB:ABB51614.1); contains InterPro domain LIM, zinc-binding; (InterPro:IPR001781); cont"
MSGI1_5171	TC10748	0.6	54.7	4	58.7	6.5	3.9	0	0	protein.degradation.metalloprotease	"matrixin family protein  similar to matrixin family protein [Arabidopsis thaliana] (TAIR:AT1G24140.1); similar to Peptidase M10A and M12B, matrixin and adamalysin; Peptidase, metallopeptidases [Medicago truncatula] (GB:ABE93630.1); contains InterPro doma"
MSGI1_4340	TC10750	5.9	26.6	13.6	21.2	2.2	0	0	0	hormone metabolism.cytokinin.synthesis-degradation	"CKX7 (CYTOKININ OXIDASE 7); oxidoreductase This gene used to be called AtCKX5. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins. Identical to Cytokinin dehydrogenase 7 (EC 1."
MSGI1_15851	TC10755	63.6	26.7	29.5	38.7	-1.3	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_3474	TC10758	73.2	98	29.6	30.4	0	0	1.3	1.7	not assigned.unknown	not assigned.unknown
MSGI1_8916	TC10762	126.6	5.4	22.4	8.6	-4.6	0	2.5	0	lipid metabolism.FA synthesis and FA elongation.acyl coa ligase	AMP-dependent synthetase and ligase family protein  similar to acyl-activating enzyme 11 (AAE11) [Arabidopsis thaliana] (TAIR:AT1G66120.1); similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT1G68270.1); similar t
MSGI1_12099	TC10767	21.4	22.6	73.3	28.3	0	-1.4	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_1908	TC1077	15.8	14	56.5	34.3	0	0	-1.8	0	cell wall	"SCPL45; serine carboxypeptidase  similar to SCPL46 (serine carboxypeptidase-like 46), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G33530.1); similar to Os04g0396800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052663.1); similar to Seri"
MSGI1_1908	TC1077	15.8	14	56.5	34.3	0	0	-1.8	0	protein.degradation.serine protease	"SCPL45; serine carboxypeptidase  similar to SCPL46 (serine carboxypeptidase-like 46), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G33530.1); similar to Os04g0396800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052663.1); similar to Seri"
MSGI1_14342	TC10770	288.6	159.5	80.4	169.8	0	1.1	1.8	0	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L21 (RPL21C)  Identical to 60S ribosomal protein L21-1 (RPL21C) [Arabidopsis Thaliana] (GB:Q43291); similar to 60S ribosomal protein L21 (RPL21A) [Arabidopsis thaliana] (TAIR:AT1G09590.1); similar to 60S ribosomal protein L21, putat"
MSGI1_25171	TC10776	411	168.7	219.3	173.1	-1.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_10261	TC1078	41.8	33.2	17.7	43.6	0	1.3	0	0	"misc.oxidases - copper, flavone etc."	"oxidoreductase, zinc-binding dehydrogenase family protein  Identical to Quinone oxidoreductase-like protein At1g23740, chloroplast precursor (EC 1.-.-.-) [Arabidopsis Thaliana] (GB:Q9ZUC1;GB:Q945P3); similar to oxidoreductase, zinc-binding dehydrogenase"
MSGI1_3545	TC1079	19.7	35.9	48.3	41.1	0	0	-1.3	0	protein.postranslational modification	"OST1 (OPEN STOMATA 1); kinase/ protein kinase Encodes calcium-independent ABA-activated protein kinase, a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.  Mutations disru"
MSGI1_3545	TC1079	19.7	35.9	48.3	41.1	0	0	-1.3	0	cell wall	"OST1 (OPEN STOMATA 1); kinase/ protein kinase Encodes calcium-independent ABA-activated protein kinase, a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.  Mutations disru"
MSGI1_20523	TC10795	0.7	0.3	24.4	41.5	0	0	-5.1	-7.1	not assigned.unknown	not assigned.unknown
MSGI1_2860	TC10797	9.3	14.6	0.1	0	0	0	0	4.9	not assigned.unknown	not assigned.unknown
MSGI1_7409	TC108	38.7	10.2	53.2	41.7	-1.9	0	0	-2	PS.lightreaction.photosystem II.PSII polypeptide subunits	"CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding Subunit of light-harvesting complex II (LHCII),which absorbs light and transfers energy to the photosynthetic reaction center. Identical to Chlorophyll a-b binding protein 2, chloroplast precu"
MSGI1_1967	TC1080	13.3	38.4	37.5	34.9	1.5	0	-1.5	0	transport.amino acids	"AAP3 (amino acid permease 3); amino acid permease Amino acid permease which transports basic amino acids. similar to AAP4 (amino acid permease 4), amino acid permease [Arabidopsis thaliana] (TAIR:AT5G63850.1); similar to AAP5 (amino acid permease 5), ami"
MSGI1_40791	TC10802	10.1	21.1	37.3	24.7	0	0	-1.9	0	RNA.regulation of transcription.putative transcription regulator	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein  similar to agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G55600.1); similar to unknown
MSGI1_38665	TC10809	34.7	34.7	108.5	57.5	0	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_2131	TC1081	684.5	521	344.1	536.6	0	0	1	0	cell.organisation	"ACT7 (actin 7) Member of Actin gene family.Mutants are defective in germination and root growth. Identical to Actin-7 (Actin-2) (ACT7) [Arabidopsis Thaliana] (GB:P53492;GB:P53495); similar to ACT3 (ACTIN 3), structural constituent of cytoskeleton [Arabid"
MSGI1_20567	TC10819	33.1	166.3	174.8	21.5	2.3	-3	-2.4	3	not assigned.unknown	not assigned.unknown
MSGI1_14585	TC10827	77.9	49.5	384.7	59.5	0	-2.7	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_35554	TC10832	0.1	0.2	26.2	22.8	0	0	-8	-6.8	not assigned.unknown	not assigned.unknown
MSGI1_8445	TC10835	7.7	10	90.6	23.8	0	-1.9	-3.6	0	fermentation.aldehyde dehydrogenase	ALDH7B4 (ALDEHYDE DEHYDROGENASE 7B4); 3-chloroallyl aldehyde dehydrogenase Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 7B4 (EC 1.2.1.3) (Antiquitin-1) (Turgor- responsive ALDH) (ALDH7B4) [Arabidopsis Thaliana] (GB:Q9SYG7;GB:Q546B7); simila
MSGI1_14273	TC10845	28.5	24.9	22.9	50.5	0	1.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_5054	TC10849	6.6	8.3	30.5	5.4	0	-2.5	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_4824	TC10864	24.5	18.9	6.3	12.2	0	0	2	0	cell wall	"glycosyl hydrolase family 17 protein  similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT5G55180.1); similar to Glycoside hydrolase, family 17 [Medicago truncatula] (GB:ABE77964.1); contains InterPro domain X8; (InterPro:IPR01"
MSGI1_14743	TC10872	43.5	35.9	26.6	55.6	0	1.1	0	0	stress.abiotic.cold	CSDP1 (COLD SHOCK DOMAIN PROTEIN 1); nucleic acid binding  similar to cold-shock DNA-binding family protein [Arabidopsis thaliana] (TAIR:AT2G17870.1); similar to cold shock domain protein 3 [Triticum aestivum] (GB:BAD08701.1); similar to Os02g0121100 [Or
MSGI1_6675	TC10873	19	37.2	14.3	2.9	0	0	0	3.7	signalling.calcium	calmodulin-binding protein  similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT5G57580.1); similar to At1g73800/F25P22_22 [Medicago truncatula] (GB:ABE78902.1); contains InterPro domain Calmodulin binding protein-like; (InterPro:IPR01241
MSGI1_27554	TC10874	40	8.8	17.4	7.8	-2.2	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_27554	TC10874	40	8.8	17.4	7.8	-2.2	0	0	0	cell wall	GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G26430.1); similar to Os07g0586200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060129.1); similar to hypothetical pro
MSGI1_27554	TC10874	40	8.8	17.4	7.8	-2.2	0	0	0	misc.GDSL-motif lipase	GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G26430.1); similar to Os07g0586200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060129.1); similar to hypothetical pro
MSGI1_2481	TC1089	149.8	231.3	502.6	203	0	-1.3	-1.7	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	"CAD4 (CINNAMYL ALCOHOL DEHYDROGENASE 4); cinnamyl-alcohol dehydrogenase Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use caffeyl, coniferyl and  d-hydroxyconiferyl alde"
MSGI1_18628	TC10895	25.3	35.4	0.2	0.1	0	0	7	8.5	not assigned.unknown	not assigned.unknown
MSGI1_8985	TC109	197.2	125.3	65.5	118	0	0	1.6	0	stress.abiotic.heat	"heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)  Identical to Heat shock cognate 70 kDa protein 3 (Hsc70.3) (HSC70-3) [Arabidopsis Thaliana] (GB:O65719;GB:Q42345); similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR"
MSGI1_66113	TC10903	0	0	125.7	118	0	0	-8	-7.9	not assigned.unknown	not assigned.unknown
MSGI1_27912	TC10905	3.8	3.4	29	64.1	0	1.1	-2.9	-4.2	not assigned.unknown	not assigned.unknown
MSGI1_15825	TC10906	8.3	8	33	21.4	0	0	-2	0	secondary metabolism.isoprenoids.tocopherol biosynthesis.tocopherol methyltransferase	"G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leaves Identical to Tocopherol O-methyltransferase, chloroplast precur"
MSGI1_64	TC1091	12.8	17	48.2	23.2	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_10004	TC10912	17.2	22.3	80.9	17.2	0	-2.2	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_1583	TC1092	407.9	252.2	201	389.4	0	1	1	0	glycolysis.enolase	LOS2 (Low expression of osmotically responsive genes 1); phosphopyruvate hydratase Involved in light-dependent cold tolerance and encodes an enolase. Identical to Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase) (2-phospho-D- glycerate hydro-lyase)
MSGI1_8582	TC10926	16.2	0.2	62.3	0.3	-6.3	-7.7	-1.9	0	secondary metabolism.wax	"CER1 protein, putative  similar to CER1 protein, putative [Arabidopsis thaliana] (TAIR:AT2G37700.1); similar to CER1 (ECERIFERUM 1) [Arabidopsis thaliana] (TAIR:AT1G02205.2); similar to Sterol desaturase [Medicago truncatula] (GB:ABD28316.1); similar to"
MSGI1_43621	TC1093	60.6	35.3	20.2	55.4	0	1.5	1.6	0	protein.postranslational modification	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G71410.1); similar to protein kinase family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD61275.1); similar to Os01g0616100 [Oryza sativ
MSGI1_4445	TC10931	5.7	24	8	10.6	2.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_16703	TC10932	14.5	44.6	10.8	45.6	1.6	2.1	0	0	misc.misc2	"formamidase, putative / formamide amidohydrolase, putative  similar to formamidase, putative / formamide amidohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G37550.1); similar to Os01g0764900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044346"
MSGI1_24202	TC10934	38.7	26.4	4.9	6	0	0	3	2.1	development.storage proteins	PLA IIB/PLP6 (Patatin-like protein 6); nutrient reservoir  similar to PLA IIIA/PLP7 (Patatin-like protein 7) [Arabidopsis thaliana] (TAIR:AT3G54950.1); similar to putative lipid acyl hydrolase [Oryza sativa] (GB:AAK72885.1); similar to Os03g0254400 [Oryza
MSGI1_9898	TC1094	27.2	81.2	59	47.7	1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_24430	TC10940	9.8	42	11.6	23.8	2.1	0	0	0	cell wall.cellulose synthesis.cellulose synthase	"IRX3 (IRREGULAR XYLEM 3, MURUS 10); cellulose synthase encodes a xylem-specific cellulose synthase Identical to Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) (CESA7) [Arabidopsis Thal"
MSGI1_19811	TC10951	7.5	26.2	12.2	3.2	1.8	0	0	3	not assigned.unknown	not assigned.unknown
MSGI1_3050	TC10967	0.2	0.3	69.2	24.8	0	-1.5	-8.4	-6.4	cell wall	"leucine-rich repeat protein kinase, putative  similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G29450.1); similar to light repressible receptor protein kinase [Arabidopsis thaliana] (TAIR:AT4G29990.1); similar to le"
MSGI1_3050	TC10967	0.2	0.3	69.2	24.8	0	-1.5	-8.4	-6.4	signalling.receptor kinases.leucine rich repeat I	"leucine-rich repeat protein kinase, putative  similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G29450.1); similar to light repressible receptor protein kinase [Arabidopsis thaliana] (TAIR:AT4G29990.1); similar to le"
MSGI1_13468	TC10985	13.9	19.1	35.1	11.2	0	-1.6	0	0	"RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family"	zinc finger (B-box type) family protein  similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT4G27310.1); similar to Os06g0298200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057441.1); similar to hypothetical protein [
MSGI1_15824	TC10988	103.1	65.4	18.2	41.9	0	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_14673	TC10990	9.4	15.6	30.9	11.7	0	0	-1.7	0	mitochondrial electron transport / ATP synthesis.electron transfer flavoprotein	ETFQO (ELECTRON-TRANSFER FLAVOPROTEIN:UBIQUINONE OXIDOREDUCTASE); catalytic/ electron acceptor Encodes a unique electron-transfer flavoprotein:ubiquinone oxidoreductase that is localized to the mitochondrion. Mutants are more sensitive to sugar starvatio
MSGI1_14243	TC10992	24.4	2.9	11.8	2	-3.1	0	0	0	RNA.regulation of transcription.unclassified	"remorin family protein  similar to remorin family protein [Arabidopsis thaliana] (TAIR:AT1G45207.2); similar to Remorin, C-terminal re (GB:ABE89592.1); contains InterPro domain Remorin, C-terminal region; (InterPro:IPR005516)"
MSGI1_4863	TC10997	28.1	2.9	8.1	0.7	-3.3	0	1.8	0	cell wall	"protein kinase, putative  similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G01490.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06451.1); contai"
MSGI1_4863	TC10997	28.1	2.9	8.1	0.7	-3.3	0	1.8	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_4863	TC10997	28.1	2.9	8.1	0.7	-3.3	0	1.8	0	protein.postranslational modification	"protein kinase, putative  similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G01490.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06451.1); contai"
MSGI1_8444	TC110	56.7	17.9	22.3	46.4	-1.7	0	1.3	-1.4	PS.lightreaction.photosystem II.PSII polypeptide subunits	"CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding Subunit of light-harvesting complex II (LHCII),which absorbs light and transfers energy to the photosynthetic reaction center. Identical to Chlorophyll a-b binding protein 2, chloroplast precu"
MSGI1_25986	TC11002	5.8	28	31.2	12.6	2.3	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_16152	TC11013	43	221.1	33.8	47.8	2.4	0	0	2.2	not assigned.unknown	not assigned.unknown
MSGI1_1500	TC11023	11.5	59.5	23.8	41.4	2.4	0	0	0	protein.degradation.ubiquitin.E2	"PHO2/UBC24 (PHOSPHATE 2); ubiquitin-protein ligase Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. similar to UBC23 (ubiquitin-conjugating enzyme"
MSGI1_16214	TC11025	28.6	19.5	1.4	4.9	0	0	4.4	0	DNA.unspecified	pseudogene of 3'-5' exonuclease domain-containing protein
MSGI1_15586	TC11041	10.8	14.4	38	20.5	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_21074	TC11044	42.6	35.2	12.2	13.5	0	0	1.8	0	secondary metabolism.simple phenols	"LAC5 (laccase 5); copper ion binding / oxidoreductase putative laccase, a member of laccase family of genes (17 members in Arabidopsis). similar to LAC3 (laccase 3), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G30210.1); similar t"
MSGI1_12490	TC11048	17.8	11.9	52.8	12.3	0	-2.1	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_16421	TC11053	21.7	70.3	64	22.6	1.7	-1.5	-1.6	1.6	not assigned.unknown	not assigned.unknown
MSGI1_24929	TC11061	11.7	13.1	42.6	37.9	0	0	-1.9	-1.5	protein.synthesis.initiation	"eukaryotic translation initiation factor SUI1, putative  Identical to Protein translation factor SUI1 homolog 1 [Arabidopsis Thaliana] (GB:P41568;GB:Q9SLK5); similar to eukaryotic translation initiation factor SUI1, putative [Arabidopsis thaliana] (TAIR:"
MSGI1_8659	TC11074	9	16.1	30.1	16.5	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_4408	TC1108	154.8	52.2	67.5	41.7	-1.6	0	1.2	0	cell wall	"peroxidase, putative  Identical to Peroxidase 51 precursor (EC 1.11.1.7) (Atperox P51) (ATP37) (PER51) [Arabidopsis Thaliana] (GB:Q9SZE7;GB:Q8VYK8); similar to peroxidase 50 (PER50) (P50) (PRXR2) [Arabidopsis thaliana] (TAIR:AT4G37520.1); similar to pero"
MSGI1_4408	TC1108	154.8	52.2	67.5	41.7	-1.6	0	1.2	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 51 precursor (EC 1.11.1.7) (Atperox P51) (ATP37) (PER51) [Arabidopsis Thaliana] (GB:Q9SZE7;GB:Q8VYK8); similar to peroxidase 50 (PER50) (P50) (PRXR2) [Arabidopsis thaliana] (TAIR:AT4G37520.1); similar to pero"
MSGI1_35277	TC11082	78.6	48.2	30.6	55.7	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_11088	TC11085	7.4	9.4	24.6	5.5	0	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_893	TC1109	7.6	11.3	72.3	77.5	0	0	-3.2	-2.8	DNA.synthesis/chromatin structure	TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in prolifer
MSGI1_47851	TC11091	65.8	56.7	7.8	8.7	0	0	3.1	2.7	RNA.RNA binding	"RNA and export factor-binding protein, putative  similar to RNA and export factor-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G59950.1); similar to ALY protein [Nicotiana benthamiana] (GB:CAG26903.1); contains InterPro domain Nucleotide-bin"
MSGI1_24754	TC11106	18.1	4.7	1.8	0.4	0	0	3.3	0	hormone metabolism.ethylene.synthesis-degradation	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G55290.1); similar to 2-oxoglutarate-dependent dioxygenase [Solanum lycopersicum] (GB:BAD98961.1); contain"
MSGI1_24754	TC11106	18.1	4.7	1.8	0.4	0	0	3.3	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_20052	TC1111	16.9	2.4	24.2	5.8	-2.8	-2.1	0	0	stress.biotic	PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. Identical to Hevein-like protein precursor (HE
MSGI1_19519	TC11110	6.3	21.4	12.8	4.3	0	0	0	2.3	transport.potassium	potassium channel tetramerisation domain-containing protein  similar to potassium channel tetramerisation domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G09030.1); similar to BTB/POZ [Medicago truncatula] (GB:ABD28655.1); contains InterPro doma
MSGI1_10854	TC11118	33.4	18.3	11.1	24	0	0	1.6	0	protein.synthesis.initiation	EIF3K (eukaryotic translation initiation factor 3K) Encodes initiation factor 3k (EIF3k). Identical to Eukaryotic translation initiation factor 3 subunit 12 (eIF-3 p25) (eIF3k) (TIF3K1) [Arabidopsis Thaliana] (GB:Q9SZA3); similar to Eukaryotic translation
MSGI1_20095	TC1112	3.2	4.9	40.9	32.6	0	0	-3.7	-2.7	stress.biotic	PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. Identical to Hevein-like protein precursor (HE
MSGI1_10795	TC11128	9.4	4	25	5.4	0	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_3691	TC1114	24.1	86.5	96.6	18.9	1.8	-2.4	-2	2.2	protein.postranslational modification	"protein phosphatase 2C, putative / PP2C, putative  similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G30020.1); similar to protein phosphatase 2C [Medicago sativa] (GB:CAA72341.1); contains InterPro domain Prote"
MSGI1_14949	TC11146	64.4	31.9	34.6	26.5	-1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_3921	TC11167	47.4	37.5	46.5	78.2	0	0	0	-1.1	misc.rhodanese	rhodanese-like domain-containing protein  similar to rhodanese-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G08920.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL52773.1); similar to Os09g0530000 [Oryza sativa (japoni
MSGI1_44819	TC11178	15.2	2.1	2.6	2.3	-2.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_7665	TC11179	14.8	1.5	2.5	2.4	-3.3	0	0	0	cell wall	"glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT2G44450.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE86373.1); contains InterPro domain 6-phospho-beta-galacto"
MSGI1_7665	TC11179	14.8	1.5	2.5	2.4	-3.3	0	0	0	"misc.gluco-, galacto- and mannosidases"	"glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT2G44450.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE86373.1); contains InterPro domain 6-phospho-beta-galacto"
MSGI1_5182	TC11188	37.4	50.5	88.7	73.9	0	0	-1.2	0	cell wall	"leucine-rich repeat protein, putative  similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G43740.1); similar to Leucine-rich repeat, plant specific [Medicago truncatula] (GB:ABE82625.1); contains InterPro domain Leucine-rich re"
MSGI1_4333	TC11190	8.9	33.2	12.4	19.4	1.9	0	0	0	protein.degradation.ubiquitin.E3.SCF.FBOX	kelch repeat-containing F-box family protein  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G24760.1); similar to Os09g0292900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062790.1); similar to kelch repeat-containing F-box-like p
MSGI1_16610	TC11192	17.6	23.9	33.8	6.9	0	-2.3	0	0	protein.degradation.ubiquitin.E3.RING	zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G43430.1); similar to RING-H2 protein [Medicago sativa] (GB:AAN32654.1); similar to Os04g0579200 [Oryza sa
MSGI1_23991	TC11194	6.6	21.4	1	0.8	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_14375	TC11196	119.3	55.9	38.3	63.4	-1.1	0	1.6	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S17 (RPS17D)  Identical to 40S ribosomal protein S17-2 (RPS17B) [Arabidopsis Thaliana] (GB:Q9SJ36;GB:Q94K44); Identical to 40S ribosomal protein S17-4 (RPS17D) [Arabidopsis Thaliana] (GB:Q9LZ17;GB:Q8LAE8); similar to 40S ribosomal pr
MSGI1_16609	TC11201	84.2	40.1	31.7	52.2	-1.1	0	1.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L31 (RPL31C)  Identical to 60S ribosomal protein L31-3 (RPL31C) [Arabidopsis Thaliana] (GB:P51420;GB:Q8LEJ0;GB:Q9FJU1); similar to 60S ribosomal protein L31 (RPL31B) [Arabidopsis thaliana] (TAIR:AT4G26230.1); similar to 60S ribosomal
MSGI1_9374	TC11205	15.2	10.4	55	11.6	0	-2.2	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_3804	TC11208	4.9	5.6	37.5	5.7	0	-2.7	-2.9	0	transport.ABC transporters and multidrug resistance systems	ABC transporter family protein  Identical to White-brown complex homolog protein 23 (WBC23) [Arabidopsis Thaliana] (GB:Q93YS4;GB:Q94EX0;GB:Q9FG17); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G52310.1); similar to Putative AB
MSGI1_20616	TC11209	61.8	27.2	48	48.7	-1.2	0	0	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"EMB2184 (EMBRYO DEFECTIVE 2184); structural constituent of ribosome  Identical to 50S ribosomal protein L31, chloroplast precursor (CL31) (RPL31) [Arabidopsis Thaliana] (GB:Q9FWS4); similar to similar to chloroplast 50S ribosomal protein L31 [Medicago sa"
MSGI1_31824	TC11212	11	23.8	112	4.4	0	-4.7	-3.3	2.4	not assigned.unknown	not assigned.unknown
MSGI1_13398	TC11215	10.4	33.2	23.2	7.5	1.7	0	0	2.1	cell wall	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein  similar to protein kinase family protein / peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G23770.1); similar to Os02g0193000 [Oryz
MSGI1_13398	TC11215	10.4	33.2	23.2	7.5	1.7	0	0	2.1	signalling.receptor kinases.lysine motif	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein  similar to protein kinase family protein / peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G23770.1); similar to Os02g0193000 [Oryz
MSGI1_13050	TC11226	10.2	9.3	24	3.1	0	-3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_879	TC1123	148.3	69.4	46.4	67.5	-1.1	0	1.7	0	hormone metabolism.brassinosteroid.synthesis-degradation.sterols.DWF1	DWF1 (DIMINUTO 1); catalytic Involved in the conversion of the early brassinosteroid precursor  24-methylenecholesterol to campesterol. Brassinosteroids affect cellular elongation. Mutants have dwarf phenotype.  DWF1 is a Ca2+-dependent calmodulin-bindin
MSGI1_6802	TC11231	27.8	17.7	143.9	8.6	0	-4.1	-2.4	0	protein.degradation.cysteine protease	"cysteine proteinase, putative  similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G48350.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (Int"
MSGI1_22620	TC11232	11.7	22.6	2.1	1.7	0	0	0	3.7	not assigned.unknown	not assigned.unknown
MSGI1_446	TC1124	10.6	55.3	14.8	45.5	2.4	1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_17849	TC11268	254.4	122.9	83.2	142.7	-1	0	1.6	0	protein.synthesis.misc ribososomal protein	"STV1 (SHORT VALVE1); structural constituent of ribosome RPL24B encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B. Mutants showed defects in"
MSGI1_36527	TC11280	7.6	15.1	29.2	13.7	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_22619	TC11282	6.4	6.2	34.7	3.3	0	-3.4	-2.4	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	DREB1A (DEHYDRATION RESPONSE ELEMENT B1A); DNA binding / transcription factor/ transcriptional activator encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members
MSGI1_22619	TC11282	6.4	6.2	34.7	3.3	0	-3.4	-2.4	0	stress.abiotic.drought/salt	DREB1A (DEHYDRATION RESPONSE ELEMENT B1A); DNA binding / transcription factor/ transcriptional activator encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members
MSGI1_2888	TC1129	42	64	16	48	0	1.6	1.4	0	amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase	GAD (Glutamate decarboxylase 1); calmodulin binding Encodes one of two isoforms of glutamate decarboxylase. Identical to Glutamate decarboxylase 1 (EC 4.1.1.15) (GAD 1) (GAD1) [Arabidopsis Thaliana] (GB:Q42521;GB:Q9FFH9); similar to glutamate decarboxyla
MSGI1_15105	TC11293	20.8	71.8	44.3	38.1	1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_7075	TC1130	48	21.4	17.1	17	0	0	1.5	0	cell wall	"glycosyl hydrolase family 17 protein  Identical to Putative glucan endo-1,3-beta-glucosidase 7 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 7) ((1->3)-beta-glucanase 7) (Beta- 1,3-endoglucanase 7) (Beta-1,3-glucanase 7) [Arabidopsis Thaliana"
MSGI1_5037	TC1131	24.6	19.5	2.8	8.8	0	0	3.1	0	RNA.processing	"small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative  similar to SMB [Arabidopsis thaliana] (TAIR:AT4G20440.3); similar to small nuclear ribonucleoprotein polypeptide B/B' isoform B' [Homo sapiens] ("
MSGI1_19754	TC11310	4.2	11.4	24.7	22.4	0	0	-2.6	0	lipid metabolism.TAG synthesis	glycine-rich protein / oleosin  similar to glycine-rich protein / oleosin [Arabidopsis thaliana] (TAIR:AT1G48990.1); similar to OLE-5 [Coffea canephora] (GB:AAX49393.1); contains InterPro domain Oleosin; (InterPro:IPR000136)
MSGI1_46609	TC11316	133.1	5.6	17.6	4.7	-4.6	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_46383	TC11319	90.8	29.3	38.3	36.6	-1.6	0	1.2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L38 (RPL38B)  Identical to 60S ribosomal protein L38 (RPL38B) [Arabidopsis Thaliana] (GB:O22860;GB:Q1WW90); similar to 60S ribosomal protein L38 (RPL38A) [Arabidopsis thaliana] (TAIR:AT2G43460.1); similar to Ribosomal L38e protein [M
MSGI1_21600	TC11337	23.1	10.7	3.5	5.6	0	0	2.7	0	misc.UDP glucosyl and glucoronyl transferases	"UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G36780.1); similar to DOGT1 (DON-GLUCOSYLTRANSFERASE), UDP-glycosyltransferase/ transferase, tra"
MSGI1_21227	TC11364	44	18.3	15.1	16.5	-1.3	0	1.5	0	protein.postranslational modification	"10 kDa chaperonin, putative  similar to CPN10 (CHAPERONIN 10) [Arabidopsis thaliana] (TAIR:AT1G14980.1); similar to 10 kDa chaperonin (Protein CPN10) (Protein groES) (GB:Q96539); contains InterPro domain Chaperonin Cpn10; (InterPro:IPR001476); contains I"
MSGI1_9806	TC11365	142.9	78.4	44.9	66.6	0	0	1.7	0	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L18 (RPL18C)  Identical to 60S ribosomal protein L18-3 (RPL18C) [Arabidopsis Thaliana] (GB:Q940B0); similar to RPL18 (RIBOSOMAL PROTEIN L18), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G05590.1); similar to c"
MSGI1_78548	TC11373	26.1	25.9	11.7	6.5	0	0	0	2	not assigned.unknown	not assigned.unknown
MSGI1_12606	TC11378	223.6	101.7	93.1	135.8	-1.1	0	1.3	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L22-2 (RPL22B)  Identical to 60S ribosomal protein L22-2 (RPL22B) [Arabidopsis Thaliana] (GB:Q9M9W1); similar to 60S ribosomal protein L22 (RPL22C) [Arabidopsis thaliana] (TAIR:AT5G27770.1); similar to Ribosomal L22e protein [Medicag
MSGI1_18372	TC11387	8.5	7.8	29.6	8.6	0	-1.8	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_66112	TC11398	82	61	265.3	411.6	0	0	-1.7	-2.8	not assigned.unknown	not assigned.unknown
MSGI1_27222	TC11404	44.6	19.3	8.1	20.1	0	0	2.5	0	RNA.regulation of transcription.unclassified	LOL1 (LSD ONE LIKE 1) Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death. similar to LSD1 (LESION SIMULATING DISEASE) [Arabidopsis thaliana] (TAIR:AT4G20380.7); similar to LSD-One-Like 1 [Brassica
MSGI1_17369	TC11406	16.8	1.9	8.8	0.7	-3.1	0	0	0	development.unspecified	"family II extracellular lipase 3 (EXL3)  similar to family II extracellular lipase 1 (EXL1) [Arabidopsis thaliana] (TAIR:AT1G75880.2); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE88162.1); contains InterPro domain Lipolytic enzyme,"
MSGI1_17369	TC11406	16.8	1.9	8.8	0.7	-3.1	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_51774	TC11408	34.6	3.1	5.8	2.5	-3.5	0	2.6	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 52 precursor (EC 1.11.1.7) (Atperox P52) (ATP49) (PER52) [Arabidopsis Thaliana] (GB:Q9FLC0); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to Peroxidase P7 (TP7) (GB:P0043"
MSGI1_51774	TC11408	34.6	3.1	5.8	2.5	-3.5	0	2.6	0	cell wall	"peroxidase, putative  Identical to Peroxidase 52 precursor (EC 1.11.1.7) (Atperox P52) (ATP49) (PER52) [Arabidopsis Thaliana] (GB:Q9FLC0); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to Peroxidase P7 (TP7) (GB:P0043"
MSGI1_44818	TC11409	68.8	3.6	10.1	2.1	-4.3	0	2.8	0	cell wall	"peroxidase, putative  Identical to Peroxidase 52 precursor (EC 1.11.1.7) (Atperox P52) (ATP49) (PER52) [Arabidopsis Thaliana] (GB:Q9FLC0); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to Peroxidase P7 (TP7) (GB:P0043"
MSGI1_44818	TC11409	68.8	3.6	10.1	2.1	-4.3	0	2.8	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 52 precursor (EC 1.11.1.7) (Atperox P52) (ATP49) (PER52) [Arabidopsis Thaliana] (GB:Q9FLC0); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to Peroxidase P7 (TP7) (GB:P0043"
MSGI1_10719	TC1141	171.4	152	87.7	133.7	0	0	1	0	DNA.synthesis/chromatin structure	"NAP1;2 (NUCLEOSOME ASSEMBLY PROTEIN1;2); DNA binding  similar to NAP1,3 (NUCLEOSOME ASSEMBLY PROTEIN1,3), DNA binding [Arabidopsis thaliana] (TAIR:AT5G56950.1); similar to nucleosome assembly protein I-like protein; similar to mouse nap I, PIR Accession"
MSGI1_7808	TC11413	0	0	46.5	32.8	0	0	-6.5	-6	not assigned.unknown	not assigned.unknown
MSGI1_4564	TC11414	30.4	4.1	14.9	6.6	-2.9	0	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	ELI3-1 (ELICITOR-ACTIVATED GENE 3); oxidoreductase/ zinc ion binding Encodes a putative mannitol dehydrogenase. Identical to Probable mannitol dehydrogenase 1 (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase 1) (ELI3-1) [Arabidopsis Thaliana] (GB:Q02
MSGI1_28375	TC11417	7.8	7.8	38.3	13.5	0	-1.5	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_51546	TC11430	47.8	63.5	15.4	23.4	0	0	1.6	1.4	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_51546	TC11430	47.8	63.5	15.4	23.4	0	0	1.6	1.4	misc.plastocyanin-like	ARPN (PLANTACYANIN); copper ion binding Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil. Identical to Putative basic blue protein precursor (Plantacyanin)
MSGI1_21753	TC11446	42.3	70.3	34.6	31.6	0	0	0	1.2	not assigned.unknown	not assigned.unknown
MSGI1_10827	TC11449	3.8	19.2	29.9	21.4	2.3	0	-3	0	protein.degradation.ubiquitin.E3.RING	zinc finger (C3HC4-type RING finger) family protein  similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G47160.1); similar to Os04g0679800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054282.1); similar to H0801D08.18 [Or
MSGI1_4111	TC11450	19.3	4.2	36.9	7.8	0	-2.2	0	0	secondary metabolism.isoprenoids.terpenoids	"beta-amyrin synthase, putative  similar to LUP1 (LUPEOL SYNTHASE 1), lupeol synthase [Arabidopsis thaliana] (TAIR:AT1G78970.1); similar to ATLUP2 (Arabidopsis thaliana lupeol synthase 2), lupeol synthase [Arabidopsis thaliana] (TAIR:AT1G78960.1); similar"
MSGI1_25829	TC11453	3.5	35.6	61.6	22.8	3.3	-1.4	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_30723	TC11459	2.3	1.3	13.8	22.9	0	0	0	-4.1	fermentation.aldehyde dehydrogenase	ALDH3H1 (ALDEHYDE DEHYDROGENASE 4); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) Encodes a protein similar to the aldehyde dehydrogenase cp-ADH from C.plantagineum. Constitutively expressed at low levels. Identical to Aldehyde dehyd
MSGI1_49856	TC11462	0.9	6.5	13.3	22	0	0	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_30493	TC11466	7	13	5.1	21.4	0	2.1	0	0	OPP.oxidative PP.6-phosphogluconolactonase	"glucosamine/galactosamine-6-phosphate isomerase family protein  similar to EMB2024 (EMBRYO DEFECTIVE 2024), catalytic [Arabidopsis thaliana] (TAIR:AT5G24400.1); similar to putative 6-phosphogluconolactonase [Oryza sativa (japonica cultivar-group)] (GB:BA"
MSGI1_5445	TC1147	43.2	31.6	78.8	15.4	0	-2.4	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_8178	TC11483	25	9.2	6.8	10.2	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_33795	TC11493	76.4	1	6.1	1.9	-6.3	0	3.6	0	misc.glutathione S transferases	ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11); glutathione transferase Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Identical to Glutathione S-transferase (EC 2.5.1.18) (GST class-phi
MSGI1_10567	TC11494	14.6	5.2	165.7	6.3	0	-4.7	-3.5	0	secondary metabolism.isoprenoids.carotenoids	"BETA-OHASE 1 (BETA-HYDROXYLASE 1); beta-carotene hydroxylase Converts beta-carotene to zeaxanthin via cryptoxanthin. similar to BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2), beta-carotene hydroxylase [Arabidopsis thaliana] (TAIR:AT5G52570.1); similar to pu"
MSGI1_23869	TC11495	20.7	43.8	5.4	5.5	0	0	0	3	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_23869	TC11495	20.7	43.8	5.4	5.5	0	0	0	3	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G17680.1); similar to TIR-NBS type disease resistance protein [Populus trichocarpa] (GB:ABF81459"
MSGI1_20522	TC1150	54.5	45.6	133.1	62.6	0	-1.1	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_8351	TC11501	7	16.7	36.9	14	0	0	-2.4	0	protein.postranslational modification	"protein kinase, putative  similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G40540.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06440.1); contai"
MSGI1_15740	TC11504	19.8	20.7	51.2	12.5	0	-2	-1.4	0	stress.biotic	"disease resistance protein (CC-NBS-LRR class), putative  similar to RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8) [Arabidopsis thaliana] (TAIR:AT5G43470.2); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:"
MSGI1_26686	TC1151	14.9	1.8	42.6	10.5	-3	-2	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_29203	TC11516	29.6	4.3	20.2	5.9	-2.8	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_46984	TC1153	3.8	3.2	42.4	22	0	0	-3.5	-2.8	not assigned.unknown	not assigned.unknown
MSGI1_26305	TC11544	11.6	25.1	39.7	17.3	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_8177	TC11545	74.4	77	0.5	0.2	0	0	7.2	8.6	not assigned.unknown	not assigned.unknown
MSGI1_14529	TC11546	0	0	16.5	13.7	0	0	-5	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_35276	TC11556	27.8	0.8	9.7	1	-5.1	0	0	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	SHN3 (SHINE3); DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
MSGI1_12098	TC11559	5.1	55.9	19.7	12.2	3.5	0	0	2.2	protein.degradation.ubiquitin.E3.RING	ATL6 (Arabidopsis T?xicos en Levadura 6); protein binding / zinc ion binding Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). Identical to RING-H2 finger protein ATL3B precursor (RING-H2 finger protein ATL6) (ATL3B) [Arabidopsis Thaliana] (GB:
MSGI1_12864	TC11573	81.4	31.4	38.6	42	-1.4	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_1089	TC1158	16.2	44.2	31.8	28.2	1.4	0	0	0	protein.postranslational modification	"protein kinase family protein  similar to KEG (KEEP ON GOING), protein binding / protein kinase/ ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G13530.1); similar to Protein kinase-like [Medicago truncatula] (GB:ABE94418.1); similar to Protein"
MSGI1_21826	TC11582	2.6	25.7	15.5	18.4	3.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_15351	TC11607	6.3	8.8	35.5	7.6	0	-2.2	-2.5	0	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	ADOF1 (Arabidopsis dof zinc finger protein 1); DNA binding / transcription factor Encodes dof zinc finger protein (adof1). Identical to Dof zinc finger protein DOF1.7 (AtDOF1.7) (DOF1.7) [Arabidopsis Thaliana] (GB:O82155); similar to ADOF2 (Arabidopsis d
MSGI1_4035	TC1161	22.3	29.9	0.1	0	0	0	7.8	5.9	protein.targeting.nucleus	"cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative  Identical to Importin-alpha re-exporter (Cellular apoptosis susceptibility protein homolog) (CAS) [Arabidopsis Thaliana] (GB:Q9ZPY7;GB:Q56WE2;GB:Q7GA14); similar"
MSGI1_4035	TC1161	22.3	29.9	0.1	0	0	0	7.8	5.9	stress.biotic	"cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative  Identical to Importin-alpha re-exporter (Cellular apoptosis susceptibility protein homolog) (CAS) [Arabidopsis Thaliana] (GB:Q9ZPY7;GB:Q56WE2;GB:Q7GA14); similar"
MSGI1_20094	TC11616	9	12.4	1.1	0.8	0	0	0	4	not assigned.unknown	not assigned.unknown
MSGI1_38353	TC11623	4.4	5.2	22	19	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_2193	TC1163	50.5	31.2	22.6	45.2	0	0	1.2	0	amino acid metabolism.synthesis.aspartate family.lysine.LL-diaminopimelic acid aminotransferase	"AGD2 (ABERRANT GROWTH AND DEATH 2); transaminase Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on ch"
MSGI1_21681	TC11651	20.3	24.1	57.8	23.8	0	-1.3	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_32730	TC11663	8.1	8.1	23.6	5.7	0	-2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_34902	TC1168	32.5	18.8	23.7	69.6	0	1.6	0	-1.9	stress.biotic	trypsin and protease inhibitor family protein / Kunitz family protein  similar to trypsin and protease inhibitor family protein / Kunitz family protein [Arabidopsis thaliana] (TAIR:AT1G73260.1); similar to Lemir [Lycopersicon esculentum] (GB:AAC63057.1);
MSGI1_3120	TC11682	93.6	33.2	44.6	27.7	-1.5	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_12328	TC11689	1.7	15.7	3.8	9.1	3.2	0	0	0	"misc.oxidases - copper, flavone etc."	"SKS1 (SKU5 SIMILAR 1); copper ion binding Encodes GPI-anchored SKU5-like protein. Identical to Monocopper oxidase-like protein SKS1 precursor (SKS1) [Arabidopsis Thaliana] (GB:Q8VXX5;GB:Q9SB39); similar to SKU5 (skewed 5), copper ion binding [Arabidopsis"
MSGI1_23245	TC1169	53.9	29	29.5	108.8	0	1.9	0	-1.9	stress.biotic	trypsin and protease inhibitor family protein / Kunitz family protein  similar to trypsin and protease inhibitor family protein / Kunitz family protein [Arabidopsis thaliana] (TAIR:AT1G73260.1); similar to Lemir [Lycopersicon esculentum] (GB:AAC63057.1);
MSGI1_20476	TC11690	27	24.4	76.8	22.2	0	-1.8	-1.5	0	glycolysis.PEPCase	ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1); phosphoenolpyruvate carboxylase Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. Identical to Phosphoenolpyruvate carboxylase 1 (EC 4.1.1.31) (PEPCase 1) (PEPC 1) (AtPPC1) (PPC1) [Arabi
MSGI1_10492	TC11698	56.5	4.6	14.3	4	-3.6	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_19708	TC1170	71.1	0.9	16.6	21.3	-6.3	0	2.1	-4.6	stress.biotic	trypsin and protease inhibitor family protein / Kunitz family protein  similar to trypsin and protease inhibitor family protein / Kunitz family protein [Arabidopsis thaliana] (TAIR:AT1G73260.1); similar to Lemir [Lycopersicon esculentum] (GB:AAC63057.1);
MSGI1_7916	TC11701	11	4.8	24.8	2.1	0	-3.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_12180	TC11716	1.2	9.4	24	6.3	0	0	-4.3	0	protein.degradation.AAA type	"AAA-type ATPase family protein  similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT4G28000.1); similar to ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G52882.1); similar to AAA ATPase,"
MSGI1_5892	TC1172	93.9	78.3	44.5	90.9	0	1	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_13397	TC11723	0	0	49.9	39.3	0	0	-6.6	-6.3	not assigned.unknown	not assigned.unknown
MSGI1_10285	TC11728	6.5	12.4	37.8	9.1	0	-2.1	-2.5	0	stress.biotic	"PGP11 (P-GLYCOPROTEIN 11); ATPase, coupled to transmembrane movement of substances  Identical to Multidrug resistance protein 8 (P-glycoprotein 11) (MDR8) [Arabidopsis Thaliana] (GB:Q9FWX7); similar to MDR3 (P-GLYCOPROTEIN 3) [Arabidopsis thaliana] (TAIR"
MSGI1_10285	TC11728	6.5	12.4	37.8	9.1	0	-2.1	-2.5	0	transport.ABC transporters and multidrug resistance systems	"PGP11 (P-GLYCOPROTEIN 11); ATPase, coupled to transmembrane movement of substances  Identical to Multidrug resistance protein 8 (P-glycoprotein 11) (MDR8) [Arabidopsis Thaliana] (GB:Q9FWX7); similar to MDR3 (P-GLYCOPROTEIN 3) [Arabidopsis thaliana] (TAIR"
MSGI1_111294	TC11731	0	3.4	3.5	563.3	0	7.3	0	-7.4	stress.biotic	acidic endochitinase (CHIB1)  Identical to Acidic endochitinase precursor (EC 3.2.1.14) (CHIB1) [Arabidopsis Thaliana] (GB:O22072;GB:O22073;GB:O24614;GB:Q5HYZ8); similar to acidic endochitinase (GB:AAA32768.1); contains InterPro domain Glycoside hydrolas
MSGI1_10566	TC11732	0	1.1	1.4	227.3	0	7.3	0	-7.7	stress.biotic	acidic endochitinase (CHIB1)  Identical to Acidic endochitinase precursor (EC 3.2.1.14) (CHIB1) [Arabidopsis Thaliana] (GB:O22072;GB:O22073;GB:O24614;GB:Q5HYZ8); similar to acidic endochitinase (GB:AAA32768.1); contains InterPro domain Glycoside hydrolas
MSGI1_43043	TC11738	25.6	9.6	5.3	8.7	0	0	2.3	0	cell wall.degradation.pectate lyases and polygalacturonases	"pectate lyase family protein  similar to PMR6 (POWDERY MILDEW RESISTANT 6), lyase/ pectate lyase [Arabidopsis thaliana] (TAIR:AT3G54920.1); similar to pectate lyase-like protein [Brassica napus] (GB:AAQ87025.1); contains InterPro domain Virulence factor,"
MSGI1_26685	TC11745	71.3	228.6	70.8	232.1	1.7	1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_120	TC11748	36.4	74.8	0.1	0	1	0	8.5	7.2	not assigned.unknown	not assigned.unknown
MSGI1_1495	TC1175	68.9	114.8	58.6	112.6	0	0.9	0	0	DNA.unspecified	"ATRBP47B (RNA-BINDING PROTEIN 47B); RNA binding  similar to ATRBP47A (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A), RNA binding [Arabidopsis thaliana] (TAIR:AT1G49600.1); similar to RNA-binding re (GB:ABE83383.1); contains InterPro domain Nucleotide-bin"
MSGI1_21476	TC11763	24.3	99.7	80.5	98.6	2	0	-1.7	0	cell wall.cell wall proteins.LRR	leucine-rich repeat family protein  similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT2G15880.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT
MSGI1_12960	TC11765	12	11.6	29.8	8.5	0	-1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_23378	TC11768	40.5	54.6	18.8	62.1	0	1.7	0	0	cell wall	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14067.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_23378	TC11768	40.5	54.6	18.8	62.1	0	1.7	0	0	protein.degradation.subtilases	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14067.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_8700	TC11769	6	11.5	28.9	19.7	0	0	-2.3	0	cell wall	"serine/threonine protein kinase, putative  similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G66910.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95895.1); contains InterPro domain Protein kinase-like; (InterPro:IPR0110"
MSGI1_8700	TC11769	6	11.5	28.9	19.7	0	0	-2.3	0	signalling.receptor kinases.wheat LRK10 like	"serine/threonine protein kinase, putative  similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G66910.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95895.1); contains InterPro domain Protein kinase-like; (InterPro:IPR0110"
MSGI1_2029	TC1177	25.4	131.6	30.9	138.8	2.4	2.2	0	0	transporter.sugars.sucrose	"SUC2 (SUCROSE-PROTON SYMPORTER 2); carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter Encodes for a high-affinity  transporter essential for phloem loading and long-distance transport. A major sucrose transporter, AtSUC2 can also transpor"
MSGI1_23868	TC11772	53.3	94.5	125.6	71.7	0	0	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_24051	TC11780	18.8	26	0.1	0	0	0	7.6	5.7	not assigned.unknown	not assigned.unknown
MSGI1_4936	TC11783	50	52.8	0.1	0	0	0	9	6.7	not assigned.unknown	not assigned.unknown
MSGI1_12605	TC11788	38.5	22.2	7.1	18	0	0	2.4	0	cell wall	"ATLP-1 (Arabidopsis thaumatin-like protein 1) encodes a thaumatin-like protein Identical to Thaumatin-like protein precursor [Arabidopsis Thaliana] (GB:P50699;GB:Q9LM26); similar to thaumatin-like protein, putative / pathogenesis-related protein, putativ"
MSGI1_12605	TC11788	38.5	22.2	7.1	18	0	0	2.4	0	stress.biotic	"ATLP-1 (Arabidopsis thaumatin-like protein 1) encodes a thaumatin-like protein Identical to Thaumatin-like protein precursor [Arabidopsis Thaliana] (GB:P50699;GB:Q9LM26); similar to thaumatin-like protein, putative / pathogenesis-related protein, putativ"
MSGI1_22912	TC1180	38.2	94.8	104.2	80.2	1.3	0	-1.4	0	stress.abiotic.touch/wounding	wound-responsive protein-related
MSGI1_21072	TC1181	7.3	6.1	31.2	10.6	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_19999	TC11810	7.6	19.7	15.8	54.4	0	1.8	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_20614	TC1182	1.8	4.7	59.2	5.1	0	-3.5	-5	0	not assigned.unknown	not assigned.unknown
MSGI1_45935	TC11828	43.5	54.3	49.4	121.9	0	1.3	0	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_28271	TC11829	63	28.3	30.7	25.9	-1.2	0	1	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_28271	TC11829	63	28.3	30.7	25.9	-1.2	0	1	0	misc.plastocyanin-like	plastocyanin-like domain-containing protein  similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G25060.1); similar to Blue (type 1) copper domain [Medicago truncatula] (GB:ABE93906.1); contains InterPro domain Cupredoxi
MSGI1_51175	TC1183	0.3	1	25.9	1.5	0	-4.1	-6.4	0	not assigned.unknown	not assigned.unknown
MSGI1_25509	TC11830	4.5	21.8	7.4	8.8	2.3	0	0	0	transport.metal	"ZIP4 (ZINC TRANSPORTER 4 PRECURSOR); cation transporter A member of Zrt- and Irt-related protein (ZIP) family.  transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficien"
MSGI1_16019	TC11854	24.5	25.6	5.8	33.7	0	2.5	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_19751	TC11860	32.9	13.3	0.4	0	0	0	6.4	4.7	not assigned.unknown	not assigned.unknown
MSGI1_14707	TC11884	5.5	1.8	25.6	3.4	0	-2.9	-2.2	0	transport.ABC transporters and multidrug resistance systems	ATMRP14 (Arabidopsis thaliana multidrug resistance-associated protein 14) member of MRP subfamily similar to ATMRP5 (Arabidopsis thaliana multidrug resistance-associated protein 5) [Arabidopsis thaliana] (TAIR:AT1G04120.1); similar to ATMRP8 (Arabidopsis
MSGI1_17169	TC11889	8.7	45.5	10.5	30.5	2.4	1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_1285	TC1189	46.8	43.7	16.3	28.7	0	0	1.5	0	redox.ascorbate and glutathione.ascorbate	"L-ascorbate oxidase/ copper ion binding  similar to L-ascorbate oxidase, putative [Arabidopsis thaliana] (TAIR:AT5G21100.1); similar to ascorbate oxidase [Brassica juncea] (GB:AAF20933.1); similar to ascorbate oxidase [Brassica juncea] (GB:AAF20931.1); s"
MSGI1_1285	TC1189	46.8	43.7	16.3	28.7	0	0	1.5	0	cell wall	"L-ascorbate oxidase/ copper ion binding  similar to L-ascorbate oxidase, putative [Arabidopsis thaliana] (TAIR:AT5G21100.1); similar to ascorbate oxidase [Brassica juncea] (GB:AAF20933.1); similar to ascorbate oxidase [Brassica juncea] (GB:AAF20931.1); s"
MSGI1_7440	TC11897	4.5	10.3	21.9	14.5	0	0	-2.3	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_7440	TC11897	4.5	10.3	21.9	14.5	0	0	-2.3	0	development.unspecified	"nodulin MtN21 family protein  similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT2G40900.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE78418.1); contains InterPro domain Protein of unknown"
MSGI1_10491	TC11898	0.7	0.2	14.5	12.8	0	0	-4.4	-6	misc.myrosinases-lectin-jacalin	curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein  similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G34300.1); similar to Protein kinase; Curculin-like (mannose-binding) lectin; Apple-like
MSGI1_3444	TC1190	265	156.8	87.3	170	0	1	1.6	0	protein.synthesis.misc ribososomal protein	P40 (40S ribosomal protein SA); structural constituent of ribosome acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue. Identical to 40S rib
MSGI1_10226	TC11904	40.8	1.6	32.7	0.9	-4.7	-5.2	0	0	cell wall.pectin*esterases.misc	pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT5G51490.1); similar to pectinesterase (EC 3.1.1.11) PECS-c2 - sweet orange (GB:T10494); similar to Pectinesterase-2 precursor (Pectin methylesterase) (
MSGI1_45734	TC11905	49.6	7.1	10.1	8	-2.8	0	2.3	0	cell wall.modification	"ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to Exp"
MSGI1_65755	TC1191	4.1	31.6	24	86.1	2.9	1.8	-2.5	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_22034	TC1192	26.1	154.6	64.4	177.9	2.6	1.5	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_29874	TC11927	62.2	2.2	24.5	6.8	-4.8	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_21143	TC11934	45.1	18.6	11.4	10.6	-1.3	0	2	0	cell wall	GRF12 (GENERAL REGULATORY FACTOR 12); protein phosphorylated amino acid binding 14-3-3 protein GF14iota (grf12) Identical to 14-3-3-like protein GF14 iota (General regulatory factor 12) (GRF12) [Arabidopsis Thaliana] (GB:Q9C5W6;GB:Q9FZD3); similar to GRF
MSGI1_21143	TC11934	45.1	18.6	11.4	10.6	-1.3	0	2	0	signalling.14-3-3 proteins	GRF12 (GENERAL REGULATORY FACTOR 12); protein phosphorylated amino acid binding 14-3-3 protein GF14iota (grf12) Identical to 14-3-3-like protein GF14 iota (General regulatory factor 12) (GRF12) [Arabidopsis Thaliana] (GB:Q9C5W6;GB:Q9FZD3); similar to GRF
MSGI1_14306	TC11945	14	26	6	3.8	0	0	0	2.8	not assigned.unknown	not assigned.unknown
MSGI1_5718	TC11962	0	0	24.1	24.6	0	0	-5.6	-5.6	DNA.unspecified	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14450.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35920.1); similar to hypothetical protein 31.t00030
MSGI1_52002	TC11966	10.2	13.6	30.6	8.8	0	-1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_11774	TC11969	34.6	26.4	67.8	29.5	0	-1.2	0	0	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	ATHVA22E (Arabidopsis thaliana HVA22 homologue E) Encodes one of five HVA22 homologs in Arabidopsis.  HVA22 is an ABA- and stress-inducible gene first isolated from barley.  Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is
MSGI1_25169	TC11970	6.5	8.7	33.9	17.9	0	0	-2.4	0	cell wall	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein  similar to NHL12 (NDR1/HIN1-like 12) [Arabidopsis thaliana] (TAIR:AT2G35960.1); similar to Harpin-induced 1 [Medicago truncatula] (GB:ABD32713.1); contains InterPro do
MSGI1_3018	TC11976	11.4	32.6	1.4	1.6	0	0	0	4.3	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G17680.1); similar to TIR-NBS type disease resistance protein [Populus trichocarpa] (GB:ABF81459"
MSGI1_29873	TC11977	14.5	5.8	24.8	4.8	0	-2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_4644	TC1198	11.8	74.7	25.8	112.8	2.7	2.1	0	0	development.storage proteins	cupin family protein  similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT2G28680.1); similar to Os05g0116000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054469.1); similar to legumin-like protein [Zea mays] (GB:AAO63267.1); contains In
MSGI1_37115	TC11980	404.5	211.2	550.3	160.4	0	-1.8	0	0	cell wall	LCR68/PDF2.3 (Low-molecular-weight cysteine-rich 68); protease inhibitor  Identical to Probable low-molecular-weight cysteine-rich protein LCR68 precursor (LCR68) [Arabidopsis Thaliana] (GB:Q9ZUL7); similar to LCR69/PDF2.2 (Low-molecular-weight cysteine-
MSGI1_37115	TC11980	404.5	211.2	550.3	160.4	0	-1.8	0	0	cell wall	LCR68/PDF2.3 (Low-molecular-weight cysteine-rich 68); protease inhibitor  Identical to Probable low-molecular-weight cysteine-rich protein LCR68 precursor (LCR68) [Arabidopsis Thaliana] (GB:Q9ZUL7); similar to LCR69/PDF2.2 (Low-molecular-weight cysteine-
MSGI1_37115	TC11980	404.5	211.2	550.3	160.4	0	-1.8	0	0	"metal handling.binding, chelation and storage"	LCR68/PDF2.3 (Low-molecular-weight cysteine-rich 68); protease inhibitor  Identical to Probable low-molecular-weight cysteine-rich protein LCR68 precursor (LCR68) [Arabidopsis Thaliana] (GB:Q9ZUL7); similar to LCR69/PDF2.2 (Low-molecular-weight cysteine-
MSGI1_37115	TC11980	404.5	211.2	550.3	160.4	0	-1.8	0	0	stress.biotic	LCR68/PDF2.3 (Low-molecular-weight cysteine-rich 68); protease inhibitor  Identical to Probable low-molecular-weight cysteine-rich protein LCR68 precursor (LCR68) [Arabidopsis Thaliana] (GB:Q9ZUL7); similar to LCR69/PDF2.2 (Low-molecular-weight cysteine-
MSGI1_20613	TC11981	2.7	2.7	23	18.5	0	0	-3.1	-2.8	not assigned.unknown	not assigned.unknown
MSGI1_54105	TC11983	48.5	2.7	16.6	2.2	-4.2	-2.9	1.5	0	DNA.repair	methyladenine glycosylase family protein  similar to methyladenine glycosylase family protein [Arabidopsis thaliana] (TAIR:AT5G44680.1); similar to Methyladenine glycosylase [Medicago truncatula] (GB:ABE81339.1); contains InterPro domain Methyladenine gly
MSGI1_8914	TC11984	3.7	2	31.4	14.6	0	0	-3.1	0	lipid metabolism.FA synthesis and FA elongation.acyl coa ligase	acyl-activating enzyme 14 (AAE14)  similar to 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein [Arabidopsis thaliana] (TAIR:AT4G19010.1); similar to Acyl-CoA synthetase (ISS) [Ostreococcus tauri] (GB:CAL50517.1); similar to
MSGI1_30491	TC11985	15	18.7	66.6	11.9	0	-2.5	-2.2	0	stress.abiotic.drought/salt	"ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis. similar to senescence/dehydration-associated protein-"
MSGI1_30491	TC11985	15	18.7	66.6	11.9	0	-2.5	-2.2	0	development.unspecified	"ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis. similar to senescence/dehydration-associated protein-"
MSGI1_29388	TC11991	82.6	66.7	31.5	60.6	0	0	1.4	0	redox.ascorbate and glutathione	ATMAPR2 (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 2); heme binding / transition metal ion binding  Identical to Putative steroid-binding protein 3 (AtMP3) (MP3) [Arabidopsis Thaliana] (GB:Q9SK39); similar to MSBP1 (ARABIDOPSIS
MSGI1_35692	TC11994	16.3	21.5	13.5	39.3	0	1.5	0	0	transport.ammonium	"ammonium transporter, putative  similar to ATAMT1,3 (ammonium transporter 1,3), ammonium transporter [Arabidopsis thaliana] (TAIR:AT3G24300.1); similar to AMT1,1 (AMMONIUM TRANSPORT 1), ammonium transporter [Arabidopsis thaliana] (TAIR:AT4G13510.1); simi"
MSGI1_1637	TC1200	9.6	31.7	32.7	12.1	1.7	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_60431	TC12001	9.6	53.9	34.9	41.5	2.5	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_27636	TC12004	241.9	101	87.5	93.3	-1.3	0	1.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L29 (RPL29B)  Identical to 60S ribosomal protein L29-2 (RPL29B) [Arabidopsis Thaliana] (GB:Q84WM0;GB:Q9M7X5); similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G06700.3); similar to Ribosomal L29e protein
MSGI1_83881	TC12009	12.3	27.5	4.3	4.2	0	0	0	2.7	not assigned.unknown	not assigned.unknown
MSGI1_11121	TC12019	8.2	7.1	26.9	3.2	0	-3.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_13508	TC12024	0.1	0	64.5	60.1	0	0	-9.3	-6.9	not assigned.unknown	not assigned.unknown
MSGI1_23866	TC12044	45.2	29.1	18.4	15.9	0	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_29987	TC12058	18	28.7	5.6	5.5	0	0	0	2.4	stress.biotic	"disease resistance protein (NBS-LRR class), putative  Identical to Putative disease resistance protein At4g27190 [Arabidopsis Thaliana] (GB:Q9T048); similar to disease resistance protein (NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G27220.1)"
MSGI1_22551	TC12063	18.3	3.1	20.2	3.2	-2.6	-2.7	0	0	stress.biotic	"pathogenesis-related protein, putative  similar to allergen V5/Tpx-1-related family protein [Arabidopsis thaliana] (TAIR:AT5G57625.1); similar to Allergen V5/Tpx-1 related [Medicago truncatula] (GB:ABE83411.1); contains InterPro domain Ves allergen; (Int"
MSGI1_41732	TC12068	12.9	25	96.6	16.8	0	-2.5	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_25473	TC1207	1.4	0.5	20.7	2.9	0	-2.8	-3.9	0	signalling.light	"ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN); chlorophyll binding Encodes an early light-inducible protein. similar to ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT4G14690.1); similar to ELIP [Brassica rapa subsp."
MSGI1_25473	TC1207	1.4	0.5	20.7	2.9	0	-2.8	-3.9	0	stress.abiotic.light	"ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN); chlorophyll binding Encodes an early light-inducible protein. similar to ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT4G14690.1); similar to ELIP [Brassica rapa subsp."
MSGI1_24113	TC12071	8.8	11.9	0.6	0.3	0	0	0	5.3	not assigned.unknown	not assigned.unknown
MSGI1_32395	TC12073	59.2	30.7	27.2	39.7	0	0	1.1	0	stress.abiotic.drought/salt	"STT3B (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE B); oligosaccharyl transferase Encodes homolog of yeast STT3, a subunit of oligosaccharyltransferase. similar to STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A), oligosaccharyl transferase [Ara"
MSGI1_23093	TC12083	3.9	5.5	33.1	8.4	0	-2	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_21266	TC12085	22.9	15.9	30.1	8.1	0	-1.9	0	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	RAV1 (Related to ABI3/VP1 1); DNA binding / transcription factor Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a neg
MSGI1_7324	TC1209	43	33.2	17.1	22.8	0	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_23244	TC12090	4.1	6.1	55.7	4.2	0	-3.7	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_23315	TC12093	5.2	4.6	21.7	2.8	0	-3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_39545	TC12096	24.4	0.2	6.9	0.4	-6.9	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_39545	TC12096	24.4	0.2	6.9	0.4	-6.9	0	0	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to ATLTL1/LTL1 (LI-TOLERANT LIPASE 1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT3G04290.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipo"
MSGI1_20612	TC12109	7.1	7.7	24.6	5.1	0	-2.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_10993	TC12110	20.3	6.9	48.4	15.6	0	-1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_24584	TC12117	2.3	19.2	11.1	25.6	3.1	0	0	0	misc.cytochrome P450	"CYP82C4 (cytochrome P450, family 82, subfamily C, polypeptide 4); oxygen binding member of CYP82C similar to CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31950.1); similar to CYP82C2 (c"
MSGI1_17064	TC12120	8.8	13	0.3	0.7	0	0	0	4.2	not assigned.unknown	not assigned.unknown
MSGI1_29571	TC12121	16.3	19.8	54.8	34.4	0	0	-1.7	0	transporter.sugars	"sugar transporter, putative  Identical to Sugar transporter ERD6-like 16 [Arabidopsis Thaliana] (GB:Q8LBI9;GB:Q8VZI5); similar to sugar transporter, putative [Arabidopsis thaliana] (TAIR:AT2G48020.1); similar to sugar transporter family protein [Arabidop"
MSGI1_31926	TC12128	22.1	43.4	71.8	30.4	0	-1.2	-1.7	0	protein.synthesis.initiation	"eukaryotic translation initiation factor SUI1, putative  similar to eukaryotic translation initiation factor SUI1, putative [Arabidopsis thaliana] (TAIR:AT4G27130.1); similar to eukaryotic translation initiation factor SUI1, putative [Arabidopsis thalian"
MSGI1_13278	TC12136	0	0	19.3	15	0	0	-5.3	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_19564	TC12145	25.2	5.6	36.5	23.2	-2.2	0	0	-2.1	PS.lightreaction.photosystem I.PSI polypeptide subunits	"TMP14 (THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA) Encodes the P subunit of Photosystem I. About 25% of the TMP14 pool appeared to be phosphorylated, and this ratio is not affected by light. Contains seven phosphorylation sites on threonine residue and"
MSGI1_20519	TC12150	3.6	32.1	2.9	22.3	3.2	2.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_20930	TC12152	34.8	9.1	11.4	10.6	-1.9	0	1.6	0	"misc.oxidases - copper, flavone etc."	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_20267	TC12161	8.5	38	16.2	11.1	2.2	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_14985	TC12175	39.8	5.3	36.6	2.3	-2.9	-4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_4882	TC1218	35	38.5	37.3	13.1	0	-1.5	0	1.6	N-metabolism.nitrate metabolism.nitrite reductase	"NIR1 (NITRITE REDUCTASE); ferredoxin-nitrate reductase involved in the second step of nitrate assimilation Identical to Ferredoxin--nitrite reductase, chloroplast precursor (EC 1.7.7.1) (NiR) (NIR1) [Arabidopsis Thaliana] (GB:Q39161;GB:Q8H163;GB:Q8H164);"
MSGI1_11632	TC12184	9.8	14.4	38.5	25.5	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_10992	TC12192	29.6	77.9	41.2	60.1	1.4	0	0	0	lipid metabolism.FA synthesis and FA elongation.ACP protein	"acyl carrier family protein / ACP family protein  similar to mtACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1), acyl carrier [Arabidopsis thaliana] (TAIR:AT2G44620.1); similar to acyl carrier protein, putative [Brassica oleracea] (GB:ABD64990.1); contains I"
MSGI1_20663	TC12198	74.9	38	28.2	28.2	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_104165	TC12199	11.7	16.2	61.1	38.7	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_19033	TC12207	78.8	39.2	35.1	41.3	-1	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_36110	TC12229	70.2	31.9	38.4	34.3	-1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_3522	TC12233	24.8	3.3	8.5	3.6	-2.9	0	0	0	cell wall.cellulose synthesis	"ATCSLC05 (Cellulose synthase-like C5); transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLC08 (Cellulose synthase-like C8), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G246"
MSGI1_28669	TC12235	30.7	14.3	39.8	13.6	0	-1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_3108	TC1225	5.7	33.4	8.3	29.6	2.6	1.8	0	0	transport.amino acids	"AAP3 (amino acid permease 3); amino acid permease Amino acid permease which transports basic amino acids. similar to AAP4 (amino acid permease 4), amino acid permease [Arabidopsis thaliana] (TAIR:AT5G63850.1); similar to AAP5 (amino acid permease 5), ami"
MSGI1_42312	TC12266	35.9	11.2	11.3	4.1	-1.7	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_15891	TC12282	3.5	4.5	24.1	3	0	-3	-2.8	0	stress.abiotic.drought/salt	similar to HYP1 (HYPOTHETICAL PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G01100.1); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os12g0582800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067142.1);
MSGI1_32974	TC12288	15	0.8	4.2	8.7	-4.2	0	0	0	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G34600.1); similar to ZIM [Medicago truncatula] (GB:ABE81432.1); contains InterPro domain ZIM; (InterPro:IPR010399)
MSGI1_21142	TC12291	4.2	4.7	38.4	35.1	0	0	-3.2	-2.9	not assigned.unknown	not assigned.unknown
MSGI1_27817	TC12307	12.3	21.2	13.1	2.9	0	0	0	2.9	cell wall	leucine-rich repeat family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT5G27060.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT2G15080.2); similar to disease resistance family prote
MSGI1_27817	TC12307	12.3	21.2	13.1	2.9	0	0	0	2.9	stress.biotic	leucine-rich repeat family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT5G27060.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT2G15080.2); similar to disease resistance family prote
MSGI1_19997	TC12310	8.4	7.8	88.4	148.7	0	0	-3.4	-4.3	protein.synthesis.elongation	elongation factor family protein  similar to GTP binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT2G31060.2); similar to Mitochondrial translation elongation factor Tu (ISS) [Ostreococcus tauri] (GB:CAL57456.1); similar to GTP-bindi
MSGI1_14828	TC12328	15.6	3.9	26.6	6.3	0	-2.1	0	0	protein.targeting	PSB29 (THYLAKOID FORMATION1) Chloroplast-localized Thylakoid formation1 gene product involved in vesicle-mediated formation of thylakoid membranes.  Thf1 antisense lines contain abnormal chloroplasts early in leaf development (chloroplasts have loosely s
MSGI1_56000	TC12331	26.9	28.1	5.7	13.8	0	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_34494	TC12333	9.4	27.5	26.6	5	0	-2.4	0	2.5	not assigned.unknown	not assigned.unknown
MSGI1_27911	TC12338	2.6	2.4	10.8	21.8	0	0	0	-3.2	fermentation.PDC	pyruvate decarboxylase family protein  similar to CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) [Arabidopsis thaliana] (TAIR:AT3G48560.1); similar to Os01g0505400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043144.1); similar to COG0028: Thiamine
MSGI1_10686	TC12344	3.6	4.1	29.5	16.6	0	0	-3	0	amino acid metabolism.degradation.branched-chain group.shared	"BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT); 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) branched-chain alpha-keto acid decarboxylase E1 beta similar to DIN4 (DARK INDUCIBLE 4), 3-methyl-2-oxobutan"
MSGI1_15935	TC12347	86.2	129.3	216.4	100.6	0	-1.1	-1.3	0	RNA.regulation of transcription.unclassified	"remorin family protein  similar to remorin family protein [Arabidopsis thaliana] (TAIR:AT3G48940.1); similar to Remorin (pp34) (GB:P93788); contains InterPro domain Remorin, N-terminal region; (InterPro:IPR005518); contains InterPro domain Remorin, C-ter"
MSGI1_13123	TC12356	74	52.7	0.3	0.1	0	0	7.9	9	cell wall.cell wall proteins	extensin family protein  similar to 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G12430.1); similar to Extensin-like re (GB:ABD65126.1); contains InterPro domain 3&apos; (InterPro:IPR002562); contains InterPro domain Polynucleo
MSGI1_35275	TC12358	6.2	4.3	1051.2	80.7	0	-3.7	-7.4	-4.2	not assigned.unknown	not assigned.unknown
MSGI1_23551	TC12360	7.6	22.9	1.5	4.6	0	0	0	2.3	transport.metal	ZIP5 (ZINC TRANSPORTER 5 PRECURSOR); cation transporter member of Fe(II) transporter isolog family Identical to Zinc transporter 5 precursor (ZRT/IRT-like protein 5) (ZIP5) [Arabidopsis Thaliana] (GB:O23039;GB:Q6ICX1); similar to ZIP3 (ZINC TRANSPORTER 3
MSGI1_8961	TC12367	86.5	112.2	406	164.2	0	-1.3	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_15820	TC12369	2.9	22.7	8.1	2.7	3	0	0	3.1	not assigned.unknown	not assigned.unknown
MSGI1_3599	TC12379	51.1	0.3	6	0.2	-7.4	0	3.1	0	nucleotide metabolism.degradation	"ATAPY2 (APYRASE 2) Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY1 causes a complete inhibition of pollen germination. similar to ATAPY1 (APYRASE 1), calmodulin binding [Arabidopsis thaliana] (T"
MSGI1_23492	TC12392	4.6	4.8	33.7	4.4	0	-2.9	-2.9	0	cell wall	disease resistance protein-related / LRR protein-related  similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G33600.1); similar to disease resistance protein-related / LRR protein-related [Arabidopsis thaliana] (TAIR:AT2G26380.
MSGI1_23492	TC12392	4.6	4.8	33.7	4.4	0	-2.9	-2.9	0	stress.biotic	disease resistance protein-related / LRR protein-related  similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G33600.1); similar to disease resistance protein-related / LRR protein-related [Arabidopsis thaliana] (TAIR:AT2G26380.
MSGI1_4094	TC12395	67.4	97.7	0.1	0	0	0	9.4	7.6	not assigned.unknown	not assigned.unknown
MSGI1_102370	TC1241	25.3	21.7	6.9	19.7	0	0	1.9	0	RNA.regulation of transcription.C2H2 zinc finger family	zinc finger (C2H2 type) family protein  similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT1G75710.1); similar to H0814G11.16 [Oryza sativa (indica cultivar-group)] (GB:CAJ86349.1); similar to CAA30374.1 protein [Oryza sativ
MSGI1_19857	TC12411	7.2	7	30.9	23.8	0	0	-2.1	0	secondary metabolism.isoprenoids.tocopherol biosynthesis.tocopherol methyltransferase	"G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leaves Identical to Tocopherol O-methyltransferase, chloroplast precur"
MSGI1_7092	TC12412	0.5	0.7	36.8	25.8	0	0	-6.2	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_41909	TC12418	2.8	5.8	17.2	32.2	0	0	0	-2.5	not assigned.unknown	not assigned.unknown
MSGI1_20518	TC12419	53.6	97	116.9	116.6	0	0	-1.1	0	redox.glutaredoxins	glutaredoxin family protein  Identical to Glutaredoxin-C13 (AtGrxC13) (GRXC13) [Arabidopsis Thaliana] (GB:O82255); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT3G62960.1); similar to glutaredoxin 1 [Plantago major] (GB:CAH59431.1
MSGI1_2834	TC1245	136.9	53.6	58.5	70.1	-1.4	0	1.2	0	transport.metabolite transporters at the mitochondrial membrane	dicarboxylate/tricarboxylate carrier (DTC)  similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT2G22500.1); similar to Mitochondrial carrier protein [Medicago truncatula] (GB:ABE79078.1); similar to oxoglutarate malate
MSGI1_38026	TC12457	50.4	16.9	43.1	21.9	-1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_25750	TC12474	186.5	123.1	84.3	111.9	0	0	1.1	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S21 (RPS21C)  Identical to 40S ribosomal protein S21-2 (RPS21C) [Arabidopsis Thaliana] (GB:Q3E902); similar to 40S ribosomal protein S21 (RPS21B) [Arabidopsis thaliana] (TAIR:AT3G53890.2); similar to Ribosomal protein S21e [Medicago
MSGI1_5200	TC1248	203.3	97.3	91.4	157.8	-1.1	0	1.2	0	PS.lightreaction.ATP synthase	"ATP synthase delta chain, chloroplast, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative  similar to ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative [Ara"
MSGI1_22163	TC12487	5.8	56	24.1	56.4	3.3	1.2	-2.1	0	redox.thioredoxin	"ATTRX2 (Arabidopsis thioredoxin h2, thioredoxin H-type 1); thiol-disulfide exchange intermediate encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring C"
MSGI1_24507	TC12489	42.9	12.8	6.2	8.9	-1.7	0	2.8	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"amidase family protein  similar to amidase family protein [Arabidopsis thaliana] (TAIR:AT5G07360.2); similar to amidase, putative [Brassica oleracea] (GB:ABD65012.1); contains InterPro domain Amidase; (InterPro:IPR000120)"
MSGI1_1246	TC1249	54	24.5	35.3	24.4	-1.1	0	0	0	cell wall	"glycosyl hydrolase family 9 protein  Identical to Endoglucanase 10 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 10) [Arabidopsis Thaliana] (GB:Q8LCP6;GB:Q9LR07); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT1G19940.1);"
MSGI1_1246	TC1249	54	24.5	35.3	24.4	-1.1	0	0	0	cell wall	"glycosyl hydrolase family 9 protein  Identical to Endoglucanase 10 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 10) [Arabidopsis Thaliana] (GB:Q8LCP6;GB:Q9LR07); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT1G19940.1);"
MSGI1_1246	TC1249	54	24.5	35.3	24.4	-1.1	0	0	0	"cell wall.degradation.cellulases and beta -1,4-glucanases"	"glycosyl hydrolase family 9 protein  Identical to Endoglucanase 10 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 10) [Arabidopsis Thaliana] (GB:Q8LCP6;GB:Q9LR07); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT1G19940.1);"
MSGI1_1246	TC1249	54	24.5	35.3	24.4	-1.1	0	0	0	"misc.gluco-, galacto- and mannosidases"	"glycosyl hydrolase family 9 protein  Identical to Endoglucanase 10 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 10) [Arabidopsis Thaliana] (GB:Q8LCP6;GB:Q9LR07); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT1G19940.1);"
MSGI1_19657	TC12494	18.9	17.7	1.4	1.7	0	0	3.8	3.4	misc.short chain dehydrogenase/reductase (SDR)	short-chain dehydrogenase/reductase (SDR) family protein  similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G04070.1); similar to ALTE [Homo sapiens] (GB:AAQ89208.1); similar to Os09g0346600 [Oryza sativa
MSGI1_3765	TC1250	62.1	132.8	123.5	120.9	1.1	0	0	0	RNA.regulation of transcription.Aux/IAA family	PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1); transcription factor phytochrome-associated protein 1 (PAP1) Identical to Auxin-responsive protein IAA26 (Indoleacetic acid-induced protein 26) (Phytochrome-associated protein 1) (IAA26) [Arabidopsis Thaliana] (GB
MSGI1_3765	TC1250	62.1	132.8	123.5	120.9	1.1	0	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1); transcription factor phytochrome-associated protein 1 (PAP1) Identical to Auxin-responsive protein IAA26 (Indoleacetic acid-induced protein 26) (Phytochrome-associated protein 1) (IAA26) [Arabidopsis Thaliana] (GB
MSGI1_15659	TC12503	3.1	11.7	65.4	12.7	0	-2.4	-4.4	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. simi"
MSGI1_6949	TC12511	2.4	3	42.1	23.9	0	0	-4.1	-3	not assigned.unknown	not assigned.unknown
MSGI1_9766	TC12528	79.2	3.1	52.1	27.8	-4.7	0	0	-3.2	not assigned.unknown	not assigned.unknown
MSGI1_72623	TC12534	4.9	7.9	28.5	25.4	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_7846	TC12540	6	9.8	27	5.7	0	-2.2	-2.2	0	protein.degradation.ubiquitin.E3.RING	"PIT1 (PITCHOUN 1); protein binding / zinc ion binding  similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01275.2); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE78108.1); contains InterPro domain RINGv"
MSGI1_45047	TC12547	11.6	27.7	39.8	9.3	0	-2.1	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_23757	TC12558	22.1	2.3	3.3	4.3	-3.3	0	2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_47611	TC12564	8.4	15.4	33.2	9.6	0	-1.8	-2	0	transport.ABC transporters and multidrug resistance systems	"PGP4 (P-GLYCOPROTEIN 4, P-GLYCOPROTEIN4); ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase Multidrug resistance  P-glycoprotein (MDR/PGP) subfamily of ABC transporters. Functions in the basipetal  redirection of au"
MSGI1_485	TC1258	29	50.5	79.7	45	0	0	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_36109	TC12586	11.6	38.9	19.9	15.4	1.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_29387	TC12587	6.2	6.9	19.6	2.6	0	-2.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_5576	TC1259	10.5	69.4	69.2	397.7	2.7	2.5	-2.7	-2.5	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit At1g60390 precursor (Aromatic-rich glycoprotein At1g60390) [Arabidopsis Thaliana] (GB:O80760); similar to JP630, polygalacturonase"
MSGI1_66111	TC12597	5.9	14	38.9	19.9	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_16805	TC12600	9.3	28.5	19.4	5.3	0	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_27724	TC12601	16.9	44.2	14.1	14.4	1.4	0	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_33794	TC12612	11.3	13.3	0	0	0	0	4.5	4.7	not assigned.unknown	not assigned.unknown
MSGI1_30087	TC12615	39.1	0.1	13.6	0.1	-8.6	-7.1	1.5	0	RNA.regulation of transcription.bZIP transcription factor family	bZIP transcription factor family protein  similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G42380.2); similar to bZIP transcription factor bZIP50 [Glycine max] (GB:ABI34644.1); contains InterPro domain Eukaryotic transc
MSGI1_61472	TC12618	1.5	1.1	67.7	3.8	0	-4.2	-5.5	0	not assigned.unknown	not assigned.unknown
MSGI1_92687	TC12619	13.1	2.5	20.3	1.5	0	-3.8	0	0	N-metabolism.N-degradation.glutamate dehydrogenase	GDH1 (GLUTAMATE DEHYDROGENASE 1); oxidoreductase encodes the beta-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells. Identical to Glutamate dehydrogenase 1 (EC 1.4.1.3) (GD
MSGI1_9568	TC1262	87.2	162.5	248	88	0	-1.5	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_104164	TC12620	0.1	0.1	66.5	48	0	0	-9.4	-8.9	not assigned.unknown	not assigned.unknown
MSGI1_20325	TC12622	8.4	10.7	32.6	7.1	0	-2.2	-2	0	"RNA.regulation of transcription.G2-like transcription factor family, GARP"	"myb family transcription factor  similar to MYR1 (MYB-RELATED PROTEIN 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G18240.2); similar to Os03g0325500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049984.1); similar to transfactor-like pr"
MSGI1_2774	TC1263	13.8	31.7	91.5	21.7	0	-2.1	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_31248	TC12631	15.6	34.4	2.3	15.4	0	2.7	2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_26788	TC1264	26.3	27.7	115.7	32	0	-1.9	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_89763	TC12640	7.5	18	41.8	16	0	-1.4	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_25301	TC12642	20.1	4.6	32	4.2	0	-2.9	0	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to lipase, putative [Arabidopsis thaliana] (TAIR:AT1G28650.1); similar to Os03g0844600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051872.1); similar to hypothetical protein [Oryza sativa (japoni"
MSGI1_25301	TC12642	20.1	4.6	32	4.2	0	-2.9	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_25301	TC12642	20.1	4.6	32	4.2	0	-2.9	0	0	cell wall	"GDSL-motif lipase/hydrolase family protein  similar to lipase, putative [Arabidopsis thaliana] (TAIR:AT1G28650.1); similar to Os03g0844600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051872.1); similar to hypothetical protein [Oryza sativa (japoni"
MSGI1_5005	TC1265	72	72.5	294.5	90.1	0	-1.7	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_13367	TC12671	1.3	1.9	14.7	11.8	0	0	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_16265	TC12679	17.2	15.2	13.5	35.7	0	1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_33273	TC12687	0.8	1.4	7.4	31.6	0	2.1	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_12987	TC12689	94.5	143.3	137.2	66.4	0	0	0	1.1	secondary metabolism.simple phenols	"IRX12/LAC4 (laccase 4); copper ion binding / oxidoreductase Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem ph"
MSGI1_349	TC1269	24	29.5	65.3	27.2	0	-1.3	-1.4	0	transport.potassium	AKT2 (Arabidopsis K+ transporter 2); cyclic nucleotide binding / inward rectifier potassium channel Encodes a photosynthate- and light-dependent inward rectifying potassium channel with unique gating properties that are regulated by phosphorylation.  Exp
MSGI1_39032	TC12697	0	0	5.9	13	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_21548	TC12700	1.9	0.2	13.7	24.8	0	0	0	-7	nucleotide metabolism.degradation	inosine-uridine preferring nucleoside hydrolase family protein  similar to inosine-uridine preferring nucleoside hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G18890.1); similar to putative inosine-uridine preferring nucleoside hydrolase [Oryza
MSGI1_17876	TC12701	41.6	18	12.2	12.2	0	0	1.8	0	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2AXb (HTA3) [Arabidopsis Thaliana] (GB:Q9S9K7); Identical to Probable histone H2AXa (HTA5) [Arabidopsis Thaliana] (GB:O04848;GB:Q8LAC0); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:A"
MSGI1_48725	TC12720	42.5	63.6	32.6	66.4	0	1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_17273	TC12726	22.3	4.5	7.8	3.4	-2.3	0	0	0	signalling.calcium	"IQD19 (IQ-DOMAIN 19); calmodulin binding  similar to IQD26 (IQ-domain 26), calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G16490.1); similar to IQ calmodulin-binding motif family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP5380"
MSGI1_34743	TC12739	26.8	9.3	3.5	10.4	0	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_23164	TC12746	5.3	51.8	3.7	5.4	3.3	0	0	3.3	protein.degradation	"prolyl oligopeptidase  similar to prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G20380.1); similar to prolyl endopeptidase [Homo sapiens] (GB:NP_002717.3); simila"
MSGI1_37557	TC12750	4.5	6.5	35.1	18.9	0	0	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_14270	TC12767	1.7	8.7	24.9	21.3	0	0	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_14018	TC12783	15	20.5	62.7	41.2	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_40445	TC12798	26.9	14.9	7.6	9.9	0	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_2471	TC128	46.9	69.9	23	14.6	0	0	0	2.3	not assigned.unknown	not assigned.unknown
MSGI1_13396	TC12824	5.6	13.4	2.3	26.4	0	3.5	0	0	protein.degradation.subtilases	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14067.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_13396	TC12824	5.6	13.4	2.3	26.4	0	3.5	0	0	cell wall	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14067.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_35552	TC12838	5.5	11.8	0	0.1	0	0	0	6.9	stress.biotic	"disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT1G47890.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE79507.1); contains Inter"
MSGI1_5700	TC12848	0	0	43.9	51.4	0	0	-6.5	-6.7	not assigned.unknown	not assigned.unknown
MSGI1_32514	TC12851	2.1	2.4	15	42.2	0	1.5	0	-4.1	misc.UDP glucosyl and glucoronyl transferases	"UGT73B3 (UDP-glucosyl transferase 73B3); UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring hexosyl groups  similar to UGT73B2, UDP-glucosyltransferase/ UDP-glycosyltransferase/ flavonol 3-O-glucosyltransferase [Arabido"
MSGI1_26510	TC12853	10.9	8.2	29.8	9	0	-1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_116655	TC1286	13.9	14.9	0.7	0	0	0	4.3	4.9	not assigned.unknown	not assigned.unknown
MSGI1_9805	TC1287	70.6	113	253.8	99.1	0	-1.4	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_28270	TC12881	32.9	20.1	5.1	15.1	0	0	2.7	0	misc.UDP glucosyl and glucoronyl transferases	"UGT73B5 (UDP-glucosyl transferase 73B5); UDP-glycosyltransferase/ transferase, transferring glycosyl groups  similar to UGT73B4, UDP-glycosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G15490.1); similar to UGT7"
MSGI1_23864	TC12896	7.3	18	29.8	21.4	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_25471	TC12898	3.5	10.6	29.3	14.7	0	0	-3.1	0	misc.cytochrome P450	"CYP714A1 (cytochrome P450, family 714, subfamily A, polypeptide 1); oxygen binding member of CYP714A similar to CYP714A2 (cytochrome P450, family 714, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G24900.1); similar to Os07g"
MSGI1_38190	TC129	43.8	74.5	2	0.3	0	0	4.5	8	not assigned.unknown	not assigned.unknown
MSGI1_11667	TC12904	25.6	18.1	39.4	50	0	0	0	-1.5	development.unspecified	senescence-associated protein-related  similar to senescence-associated protein-related [Arabidopsis thaliana] (TAIR:AT1G22160.1); similar to Os06g0223700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057184.1); similar to unknown protein [Oryza sati
MSGI1_37254	TC12916	9.4	4.8	35	9.7	0	-1.9	-1.9	0	cell wall	peptidoglycan-binding LysM domain-containing protein  similar to peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G62150.1); similar to Os10g0524300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065106.1); similar
MSGI1_15933	TC12918	35.5	46.9	81.8	40.4	0	0	-1.2	0	protein.degradation.autophagy	"ATG8F (AUTOPHAGY 8F); microtubule binding  similar to AtATG8e (AUTOPHAGY 8E), microtubule binding [Arabidopsis thaliana] (TAIR:AT2G45170.2); similar to Light chain 3 (LC3) [Medicago truncatula] (GB:ABE80903.1); similar to microtubule associated protein ["
MSGI1_47197	TC12934	23.4	45.6	21.6	7.4	0	0	0	2.6	not assigned.unknown	not assigned.unknown
MSGI1_27049	TC12936	15.7	2.2	6.7	6.4	-2.8	0	0	0	cell wall	strictosidine synthase family protein  similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT5G22020.1); similar to putative strictosidine synthase [Lycopersicon esculentum] (GB:AAF75751.1); contains InterPro domain Strictosidine
MSGI1_27049	TC12936	15.7	2.2	6.7	6.4	-2.8	0	0	0	secondary metabolism.N misc.alkaloid-like	strictosidine synthase family protein  similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT5G22020.1); similar to putative strictosidine synthase [Lycopersicon esculentum] (GB:AAF75751.1); contains InterPro domain Strictosidine
MSGI1_41316	TC12950	14	15.1	0.3	0	0	0	5.5	4.9	not assigned.unknown	not assigned.unknown
MSGI1_9624	TC12962	14.9	0.2	1.8	0.2	-6.2	0	3	0	not assigned.unknown	not assigned.unknown
MSGI1_25166	TC12966	4.3	0.3	14.3	19.9	0	0	0	-6.1	nucleotide metabolism.degradation	inosine-uridine preferring nucleoside hydrolase family protein  similar to inosine-uridine preferring nucleoside hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G18890.1); similar to putative inosine-uridine preferring nucleoside hydrolase [Oryza
MSGI1_34899	TC12968	12.6	11.2	0	0	0	0	4.7	4.5	not assigned.unknown	not assigned.unknown
MSGI1_1757	TC1297	94.6	62.8	47.3	65.2	0	0	1	0	protein.aa activation.bifunctional aminoacyl-tRNA synthetase	"tRNA synthetase class II (G, H, P and S) family protein  similar to OVA6 (OVULE ABORTION 6), ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT5G52520.1); similar to Bifunctional aminoacyl-tRNA synthetase, putative, expressed [Oryza sati"
MSGI1_6092	TC12970	68.6	26	102.4	26.8	-1.4	-1.9	0	0	development.late embryogenesis abundant	late embryogenesis abundant family protein / LEA family protein  similar to LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) [Arabidopsis thaliana] (TAIR:AT1G01470.1); similar to Os03g0843300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051862.1); similar to
MSGI1_10371	TC12983	25.7	5.5	49.1	7.5	-2.2	-2.7	0	0	secondary metabolism.isoprenoids	"beta-amyrin synthase, putative  similar to LUP1 (LUPEOL SYNTHASE 1), lupeol synthase [Arabidopsis thaliana] (TAIR:AT1G78970.1); similar to beta-amyrin synthase, putative [Arabidopsis thaliana] (TAIR:AT1G78950.1); similar to ATLUP2 (Arabidopsis thaliana l"
MSGI1_52813	TC12995	4.3	18.8	30.8	22.8	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_8442	TC12997	3.9	0.1	23.5	1.8	0	-3.7	-2.6	0	misc.short chain dehydrogenase/reductase (SDR)	short-chain dehydrogenase/reductase (SDR) family protein  similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT2G47130.1); similar to 3-beta hydroxysteroid dehydrogenase [Di (GB:AAV68714.1); contains InterPro
MSGI1_28188	TC130	80.6	108.1	0.6	0	0	0	7.1	7.8	not assigned.unknown	not assigned.unknown
MSGI1_27909	TC13011	7.1	15.8	4	2.3	0	0	0	2.8	not assigned.unknown	not assigned.unknown
MSGI1_21957	TC13019	1.7	18.4	5.9	16.6	3.4	0	0	0	protein.postranslational modification	"protein phosphatase 2C, putative / PP2C, putative  similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT1G22280.1); similar to H0815C01.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67186.1); contains InterPro dom"
MSGI1_18098	TC13022	13.9	14.2	1.5	3	0	0	3.2	0	amino acid metabolism.synthesis.glutamate family.arginine.acetylglutamate kinase	arginine biosynthesis protein ArgJ family  similar to glutamate N-acetyltransferase [Citrullus lanatus] (GB:BAE46903.1); contains InterPro domain Arginine biosynthesis protein ArgJ; (InterPro:IPR002813)
MSGI1_64656	TC13029	171.6	102.6	56.1	114.8	0	1	1.6	0	protein.targeting.nucleus	"NTF2A (NUCLEAR TRANSPORT FACTOR 2A); Ran GTPase binding / protein transporter Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transp"
MSGI1_11086	TC13050	8.5	18.4	1.2	1.4	0	0	0	3.7	not assigned.unknown	not assigned.unknown
MSGI1_17459	TC13053	8.1	18.7	80	22.2	0	-1.8	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_27908	TC13057	4.6	7	24.1	6.5	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_43842	TC13071	2.6	16.6	9.6	12.3	2.7	0	0	0	development.unspecified	TET6 (TETRASPANIN6) Member of TETRASPANIN family similar to TET9 (TETRASPANIN9) [Arabidopsis thaliana] (TAIR:AT4G30430.1); similar to putative senescence-associated protein [Oryza sativa (japonica cultivar-group)] (GB:AAS90676.1); contains InterPro domain
MSGI1_48931	TC13076	5.7	9.5	33.3	13	0	0	-2.5	0	stress.biotic	"disease resistance protein (CC-NBS-LRR class), putative  Identical to Probable disease resistance protein At5g66900 [Arabidopsis Thaliana] (GB:Q9FKZ1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G66"
MSGI1_50809	TC13080	13.8	1.9	29.9	3.6	0	-3.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_57704	TC13094	0.4	0.1	25.2	15.6	0	0	-6	-7.3	not assigned.unknown	not assigned.unknown
MSGI1_27633	TC13097	11	12.3	30.1	6.3	0	-2.3	0	0	cell wall	"protein kinase family protein  similar to RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3), kinase [Arabidopsis thaliana] (TAIR:AT2G48010.1); similar to Os05g0423500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055591.1); similar to SHR5-receptor-like k"
MSGI1_27633	TC13097	11	12.3	30.1	6.3	0	-2.3	0	0	signalling.receptor kinases.RKF3 like	"protein kinase family protein  similar to RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3), kinase [Arabidopsis thaliana] (TAIR:AT2G48010.1); similar to Os05g0423500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055591.1); similar to SHR5-receptor-like k"
MSGI1_24427	TC131	43.2	60.9	14.9	10.8	0	0	1.5	2.5	not assigned.unknown	not assigned.unknown
MSGI1_15516	TC13122	0.9	0	39.3	16.6	0	0	-5.4	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_3435	TC1313	62.3	5.1	32.5	21	-3.6	0	0	0	cell wall	"glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT2G44450.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE86373.1); contains InterPro domain 6-phospho-beta-galacto"
MSGI1_3435	TC1313	62.3	5.1	32.5	21	-3.6	0	0	0	"misc.gluco-, galacto- and mannosidases"	"glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT2G44450.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE86373.1); contains InterPro domain 6-phospho-beta-galacto"
MSGI1_30370	TC13131	11	9.4	32.4	6.2	0	-2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_7790	TC13132	33.2	5.5	17.4	10.9	-2.6	0	0	0	lipid metabolism.FA synthesis and FA elongation.acyl coa ligase	"AMP-dependent synthetase and ligase family protein  similar to 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT4G05160.1); similar to putative acyl-CoA synthetase [Capsicum annuum] (GB:AAL29212.1); si"
MSGI1_3310	TC1314	12.9	56.1	52	39.6	2.1	0	-2	0	RNA.regulation of transcription.GRAS transcription factor family	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_3310	TC1314	12.9	56.1	52	39.6	2.1	0	-2	0	development.unspecified	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_35686	TC13143	14.7	8.3	41.1	19.8	0	0	-1.5	0	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	"lipase family protein  Identical to Triacylglycerol lipase 2 precursor (EC 3.1.1.3) (LIP2) [Arabidopsis Thaliana] (GB:Q67ZU1;GB:Q681B0;GB:Q6VY31;GB:Q94AE7;GB:Q9FMT2;GB:Q9FMT3); similar to ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1), galactolipase/ hydrolase/"
MSGI1_15515	TC13149	24.2	10	6.6	6.4	0	0	1.9	0	RNA.regulation of transcription.Nucleosome/chromatin assembly factor group	HMGB6 (High mobility group B 6); transcription factor Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins similar to high mobility group (HMG1/2) family protein [Arabidopsis thaliana] (TAIR:AT5G23405.1); similar to HMG-pro
MSGI1_3819	TC13156	4.1	9.2	22.6	8.2	0	0	-2.5	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	basic helix-loop-helix (bHLH) family protein  similar to ethylene-responsive protein -related [Arabidopsis thaliana] (TAIR:AT3G20640.1); similar to 3063 (GB:AAD21412.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains
MSGI1_9833	TC13165	0.6	11.4	0.9	2.5	4.2	0	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.C4H	ATC4H (CINNAMATE-4-HYDROXYLASE) Encodes a cinnamate-4-hydroxylase. Identical to Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic acid 4- hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) (CYP73A5) [Arabidopsis Thaliana] (GB:P92994;GB:O049
MSGI1_29985	TC13166	2.2	9.5	20.7	5.2	0	0	-3.2	0	cell wall	"ANAC087; transcription factor  similar to ANAC046 (Arabidopsis NAC domain containing protein 46), transcription factor [Arabidopsis thaliana] (TAIR:AT3G04060.1); similar to NAC5 protein [Glycine max] (GB:AAX85982.1); contains InterPro domain No apical me"
MSGI1_29985	TC13166	2.2	9.5	20.7	5.2	0	0	-3.2	0	cell wall	"ANAC087; transcription factor  similar to ANAC046 (Arabidopsis NAC domain containing protein 46), transcription factor [Arabidopsis thaliana] (TAIR:AT3G04060.1); similar to NAC5 protein [Glycine max] (GB:AAX85982.1); contains InterPro domain No apical me"
MSGI1_29985	TC13166	2.2	9.5	20.7	5.2	0	0	-3.2	0	RNA.regulation of transcription.NAC domain transcription factor family	"ANAC087; transcription factor  similar to ANAC046 (Arabidopsis NAC domain containing protein 46), transcription factor [Arabidopsis thaliana] (TAIR:AT3G04060.1); similar to NAC5 protein [Glycine max] (GB:AAX85982.1); contains InterPro domain No apical me"
MSGI1_29985	TC13166	2.2	9.5	20.7	5.2	0	0	-3.2	0	development.unspecified	"ANAC087; transcription factor  similar to ANAC046 (Arabidopsis NAC domain containing protein 46), transcription factor [Arabidopsis thaliana] (TAIR:AT3G04060.1); similar to NAC5 protein [Glycine max] (GB:AAX85982.1); contains InterPro domain No apical me"
MSGI1_48298	TC13168	10	7	38.4	10.7	0	-1.8	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_19749	TC13170	0.1	0	8	12.5	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_36107	TC13182	0.1	0.3	71.4	0.5	0	-7.2	-9.5	0	not assigned.unknown	not assigned.unknown
MSGI1_15258	TC13183	5.5	3	38.2	8.9	0	-2.1	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_23920	TC13194	11.3	29.4	5.6	3.2	0	0	0	3.2	signalling.receptor kinases.misc	"receptor protein kinase-related contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domain similar to receptor-like protein ki"
MSGI1_7915	TC13197	1.4	3.4	91.9	1.4	0	-6	-6	0	minor CHO metabolism.raffinose family.galactinol synthases.known	"ATGOLS2 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 2); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  similar to ATGOLS3 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 3), transferase, transferring glycosyl groups / trans"
MSGI1_1346	TC132	52.2	73.5	19.4	14.7	0	0	1.4	2.3	RNA.regulation of transcription.WRKY domain transcription factor family	TTR1 (WRKY domain family protein 16); transcription factor Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. Identical to Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16)
MSGI1_1346	TC132	52.2	73.5	19.4	14.7	0	0	1.4	2.3	stress.biotic	"disease resistance protein (NBS-LRR class), putative  Identical to Putative disease resistance protein At4g27190 [Arabidopsis Thaliana] (GB:Q9T048); similar to disease resistance protein (NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G27220.1)"
MSGI1_37905	TC13203	18.5	5.4	2	3.3	0	0	3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_47845	TC13206	6.2	37.5	5.7	14.7	2.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_3244	TC13218	0	0	50.6	42.1	0	0	-6.7	-6.4	amino acid metabolism.synthesis.serine-glycine-cysteine group.glycine.glycine hydroxymethyltransferase	"SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3); glycine hydroxymethyltransferase  similar to SHM1 (SERINE HYDROXYMETHYLTRANSFERASE 1), glycine hydroxymethyltransferase [Arabidopsis thaliana] (TAIR:AT4G37930.1); similar to Glycine/serine hydroxymethyltransferas"
MSGI1_3244	TC13218	0	0	50.6	42.1	0	0	-6.7	-6.4	PS.photorespiration.serine hydroxymethyltransferase	"SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3); glycine hydroxymethyltransferase  similar to SHM1 (SERINE HYDROXYMETHYLTRANSFERASE 1), glycine hydroxymethyltransferase [Arabidopsis thaliana] (TAIR:AT4G37930.1); similar to Glycine/serine hydroxymethyltransferas"
MSGI1_3244	TC13218	0	0	50.6	42.1	0	0	-6.7	-6.4	C1-metabolism.glycine hydroxymethyltransferase	"SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3); glycine hydroxymethyltransferase  similar to SHM1 (SERINE HYDROXYMETHYLTRANSFERASE 1), glycine hydroxymethyltransferase [Arabidopsis thaliana] (TAIR:AT4G37930.1); similar to Glycine/serine hydroxymethyltransferas"
MSGI1_3006	TC1325	72.2	46.9	23.7	45.7	0	0	1.6	0	TCA / org. transformation.TCA.succinyl-CoA ligase	"succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative  Identical to Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial precursor (EC 6.2.1.4) (Succinyl-"
MSGI1_18816	TC13284	8.7	19.9	22.1	4.4	0	-2.3	0	0	RNA.regulation of transcription.PHOR1	"U-box domain-containing protein  similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G65920.1); similar to U-box domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94807.1); contains InterPro domai"
MSGI1_98912	TC133	4.7	12.6	0	1	0	0	0	3.7	not assigned.unknown	not assigned.unknown
MSGI1_4288	TC13307	4.3	23.3	3.9	21	2.4	2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_60125	TC13313	121.1	200.1	119.1	244	0	1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_43841	TC13323	42.5	25.6	15.2	32.7	0	0	1.5	0	protein.targeting.mitochondria	TIM8 (Arabidopsis thaliana translocase inner membrane subunit 8); protein translocase Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus. Identical to Mitochondrial import inner membrane translocase
MSGI1_28372	TC13333	16.1	2.1	3.5	2.3	-2.9	0	0	0	misc.UDP glucosyl and glucoronyl transferases	UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G30140.1); similar to Os01g0805400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044560.1);
MSGI1_39543	TC13334	67.3	30.8	85.7	19.3	-1.1	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_3118	TC1334	11.3	14.6	39.7	15.8	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_24505	TC13352	0.6	0.2	37.4	17.1	0	0	-6	-6.4	not assigned.unknown	not assigned.unknown
MSGI1_19651	TC13353	187.6	135.4	146.1	67.5	0	-1.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_23821	TC13355	132.7	1.7	41.1	0.3	-6.3	-7.1	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_15889	TC13374	3.9	6	40.9	8.8	0	-2.2	-3.4	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_15889	TC13374	3.9	6	40.9	8.8	0	-2.2	-3.4	0	secondary metabolism.flavonoids.flavonols	"SRG1 (SENESCENCE-RELATED GENE 1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors Encodes a novel member of the Fe(II"
MSGI1_10082	TC1338	27.4	77.9	75.7	32.7	1.5	-1.2	-1.5	1.3	protein.aa activation	"UBQ11 (UBIQUITIN 11); protein binding polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14.  Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana"
MSGI1_63543	TC13384	108	0.5	29	0.2	-7.8	-7.2	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_25300	TC13387	5	4	35	1.7	0	-4.4	-2.8	0	transport.nitrate	"ATNRT1:2 (NITRATE TRANSPORTER 1:2); calcium ion binding / transporter Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots. similar to nitrate transporter, putative [Arabidopsis thal"
MSGI1_16415	TC13389	31.4	6.4	10.2	7.6	-2.3	0	1.6	0	amino acid metabolism.synthesis.aspartate family.misc.homoserine.bifunctional aspartate kinase/homoserine dehydrogenase	"AK-HSDH/AK-HSDH II; aspartate kinase/ homoserine dehydrogenase Encodes a bifunctional aspartate kinase/homoserine dehydrogenase.  These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, iso"
MSGI1_46180	TC13392	5.9	4.9	24.5	6.3	0	0	-2.1	0	nucleotide metabolism.degradation	FAC1 (EMBRYONIC FACTOR1); AMP deaminase Encodes a protein with in vitro AMP deaminase activity that is involved in embryogenesis. Homozygous mutant embryos fail to develop past the zygote stage. Identical to AMP deaminase (EC 3.5.4.6) (AtAMPD) (Protein EM
MSGI1_38350	TC1340	13.5	11.5	1.1	0.5	0	0	3.6	4.5	not assigned.unknown	not assigned.unknown
MSGI1_21260	TC13403	0.1	0.1	10.5	16.8	0	0	0	-7.4	protein.synthesis.elongation	elongation factor 1-alpha / EF-1-alpha  Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A) (A4) [Arabidopsis Thaliana] (GB:P13905); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar
MSGI1_98911	TC13411	19.1	7.9	41.8	28.3	0	0	0	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_39744	TC13423	2.3	6.4	24.2	13.8	0	0	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_235	TC1344	2.3	1.5	63.4	53.8	0	0	-4.8	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_8872	TC13448	15	27.3	5.6	5.1	0	0	0	2.4	protein.degradation.ubiquitin.E3.RING	ubiquitin-protein ligase  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G69330.1); similar to Os03g0211100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049345.1); similar to Os03g0427100 [Oryza sativ
MSGI1_2809	TC1345	33.9	118.2	64.7	30.4	1.8	-1.1	0	2	protein.degradation.ubiquitin.E3.RING	ATL2 (Arabidopsis T?xicos en Levadura 2); protein binding / zinc ion binding RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. Identical to RING-H2 finger protein ATL3F (RING-H2 finger protein ATL2) (ATL3F) [Ar
MSGI1_63220	TC13459	2.9	18.3	9.1	14.8	2.7	0	0	0	transport.ABC transporters and multidrug resistance systems	"PGP16 (P-GLYCOPROTEIN 16); ATPase, coupled to transmembrane movement of substances  Identical to Multidrug resistance protein 18 (P-glycoprotein 16) (MDR18) [Arabidopsis Thaliana] (GB:Q9LSJ8;GB:Q8RXD2); similar to PGP18 (P-GLYCOPROTEIN 18), ATPase, coupl"
MSGI1_28908	TC13467	16.2	13.6	1	0.9	0	0	4	3.9	not assigned.unknown	not assigned.unknown
MSGI1_31923	TC13475	11.7	34	23.2	10	1.5	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_25902	TC13476	5.2	14.2	5.1	21	0	2	0	0	protein.postranslational modification	"SNRK2-3/SNRK2.3/SRK2I (SNF1-RELATED PROTEIN KINASE 2-3, SNF1-RELATED PROTEIN KINASE 2.3); kinase/ protein kinase encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress."
MSGI1_39371	TC1348	432.6	233.4	196.5	249.6	0	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_19350	TC13481	35.1	15.8	7.5	7.4	0	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_23820	TC13487	8.2	14.3	1.2	0.6	0	0	0	4.6	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G17680.1); similar to TIR-NBS type disease resistance protein [Populus trichocarpa] (GB:ABF81459"
MSGI1_43840	TC1349	365.5	173.3	110.3	180.3	-1.1	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_24199	TC13491	14.1	3.2	0	0	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_14906	TC13492	8.1	38.7	12.4	22.4	2.3	0	0	0	RNA.regulation of transcription.GRAS transcription factor family	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_14906	TC13492	8.1	38.7	12.4	22.4	2.3	0	0	0	development.unspecified	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_20088	TC13493	2.3	46.9	56.2	13.3	4.3	-2.1	-4.6	1.8	not assigned.unknown	not assigned.unknown
MSGI1_8812	TC13496	0.3	0.2	21.7	46.4	0	0	-6.2	-7.9	not assigned.unknown	not assigned.unknown
MSGI1_61103	TC135	27.5	42.6	0.2	0.4	0	0	7.1	6.7	not assigned.unknown	not assigned.unknown
MSGI1_3610	TC1350	8.2	43.3	19.1	15.5	2.4	0	0	1.5	not assigned.unknown	not assigned.unknown
MSGI1_13687	TC13502	0	0	85.6	91.3	0	0	-7.4	-7.5	not assigned.unknown	not assigned.unknown
MSGI1_36666	TC13503	48.3	148	0.3	0.8	1.6	0	7.3	7.5	not assigned.unknown	not assigned.unknown
MSGI1_20515	TC13509	4.1	4.5	63.1	3.1	0	-4.3	-3.9	0	fermentation.aldehyde dehydrogenase	ALDH3H1 (ALDEHYDE DEHYDROGENASE 4); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) Encodes a protein similar to the aldehyde dehydrogenase cp-ADH from C.plantagineum. Constitutively expressed at low levels. Identical to Aldehyde dehyd
MSGI1_32153	TC13514	5.3	9.3	44.6	17.2	0	-1.4	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_4438	TC13521	4.1	34.1	22.7	25.9	3.1	0	-2.5	0	"metal handling.binding, chelation and storage"	"nicotianamine synthase, putative  Identical to Nicotianamine synthase 1 (EC 2.5.1.43) (S-adenosyl-L-methionine:S- adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3- carboxypropyltransferase 1) (AtNAS1) (NAS1) [Arabidopsis Thaliana] (GB:Q9FF79;GB:Q9ZW"
MSGI1_67773	TC13526	5.1	20.8	34.4	29.5	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_60429	TC13534	10.2	25.5	1.8	5	0	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_20759	TC13537	11	4	63.7	4.9	0	-3.7	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_6376	TC1354	32.9	19	11.2	13.3	0	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_23089	TC13543	0.3	4.7	3.5	979	0	8.1	0	-7.7	stress.biotic	acidic endochitinase (CHIB1)  Identical to Acidic endochitinase precursor (EC 3.2.1.14) (CHIB1) [Arabidopsis Thaliana] (GB:O22072;GB:O22073;GB:O24614;GB:Q5HYZ8); similar to acidic endochitinase (GB:AAA32768.1); contains InterPro domain Glycoside hydrolas
MSGI1_23163	TC13557	0.6	0.5	51	6.3	0	-3	-6.4	0	development.late embryogenesis abundant	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein  similar to jacalin lectin family protein [Arabidopsis thaliana] (TAIR:AT3G16460.2); similar to group 1 LEA protein [Sisymbrium irio] (GB:AAY26119.1); co
MSGI1_2773	TC1356	83.8	42.4	51.5	84	0	0	0	-1	protein.synthesis.misc ribososomal protein	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome Encodes a cytoplasmic ribosomal protein. Identical to 60S ribosomal protein L3-1 (Protein EMBRYO DEFECTIVE 2207) (ARP1) [Arabidopsis Thaliana] (GB:P17094;GB:O82401;GB:Q42055;GB:Q9
MSGI1_10139	TC136	16.8	23.2	1.6	0.9	0	0	3.4	4.7	stress.biotic	"disease resistance protein (CC-NBS-LRR class), putative  Identical to Probable disease resistance protein At1g12280 [Arabidopsis Thaliana] (GB:P60838;GB:Q9LNB5); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (T"
MSGI1_35133	TC13611	2.9	1.6	82.1	3.6	0	-4.5	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_27813	TC13613	2.5	4.1	21.8	8.1	0	0	-3.1	0	transport.misc	"SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative  similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT1G19650.1); similar to SEC14 cytosolic factor, putati"
MSGI1_27813	TC13613	2.5	4.1	21.8	8.1	0	0	-3.1	0	DNA.unspecified	"SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative  similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT1G19650.1); similar to SEC14 cytosolic factor, putati"
MSGI1_40783	TC13614	6.1	9.9	24.3	11.8	0	0	-2	0	cell.cycle	"ICK6 (KIP-RELATED PROTEIN 3) Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. Binds to D type and CDC2A cyclins and may inhibit cell cycle.  Seven KRP genes were found in Arabidop"
MSGI1_6441	TC1363	9.6	9.5	25.3	5.5	0	-2.2	0	0	cell wall	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G45640.1); similar to subtilisin-like proteinase-like [Oryza sativa (japonica cultivar-group)] (GB:BAB21149.1); contains InterPro domain Protease-associated PA;
MSGI1_6441	TC1363	9.6	9.5	25.3	5.5	0	-2.2	0	0	protein.degradation.subtilases	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G45640.1); similar to subtilisin-like proteinase-like [Oryza sativa (japonica cultivar-group)] (GB:BAB21149.1); contains InterPro domain Protease-associated PA;
MSGI1_11969	TC13634	22.8	0.3	10.1	0.2	-6.2	0	0	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to ATLTL1/LTL1 (LI-TOLERANT LIPASE 1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT3G04290.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipo"
MSGI1_11969	TC13634	22.8	0.3	10.1	0.2	-6.2	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_7240	TC1364	20.4	24.4	24.3	68.7	0	1.5	0	-1.5	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_7240	TC1364	20.4	24.4	24.3	68.7	0	1.5	0	-1.5	cell wall	TIP4;1 (tonoplast intrinsic protein 4;1); water channel  Identical to Aquaporin TIP4.1 (Tonoplast intrinsic protein 4.1) (Epsilon-tonoplast intrinsic protein) (Epsilon-TIP) (TIP4.1) [Arabidopsis Thaliana] (GB:O82316;GB:Q53XD1); similar to GAMMA-TIP (Tono
MSGI1_7240	TC1364	20.4	24.4	24.3	68.7	0	1.5	0	-1.5	transport.Major Intrinsic Proteins.TIP	TIP4;1 (tonoplast intrinsic protein 4;1); water channel  Identical to Aquaporin TIP4.1 (Tonoplast intrinsic protein 4.1) (Epsilon-tonoplast intrinsic protein) (Epsilon-TIP) (TIP4.1) [Arabidopsis Thaliana] (GB:O82316;GB:Q53XD1); similar to GAMMA-TIP (Tono
MSGI1_12516	TC1365	28.1	9.2	45	12.7	0	-1.8	0	0	protein.targeting	PSB29 (THYLAKOID FORMATION1) Chloroplast-localized Thylakoid formation1 gene product involved in vesicle-mediated formation of thylakoid membranes.  Thf1 antisense lines contain abnormal chloroplasts early in leaf development (chloroplasts have loosely s
MSGI1_27454	TC13668	17.1	1.5	4.7	2.5	-3.5	0	0	0	protein.degradation.aspartate protease	"aspartyl protease family protein  similar to chloroplast nucleoid DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G10770.1); similar to Os09g0423500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063212.1); similar to 41 kD chloroplast"
MSGI1_27454	TC13668	17.1	1.5	4.7	2.5	-3.5	0	0	0	cell wall	"aspartyl protease family protein  similar to chloroplast nucleoid DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G10770.1); similar to Os09g0423500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063212.1); similar to 41 kD chloroplast"
MSGI1_25230	TC13676	4.4	3.2	24.5	6.2	0	-2	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_14240	TC13691	0.1	0.2	10.3	21.6	0	0	0	-6.8	not assigned.unknown	not assigned.unknown
MSGI1_35270	TC13695	15.1	0.7	6.3	1.9	-4.4	0	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	"auxin-responsive protein, putative  similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G21210.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12778.1); contains InterPro domain Auxin responsive SAUR prot"
MSGI1_31004	TC137	46.6	59.7	0.2	0.2	0	0	7.9	8.2	not assigned.unknown	not assigned.unknown
MSGI1_30488	TC13707	1.4	0.7	23.9	1.8	0	-3.7	-4.1	0	stress.biotic.respiratory burst	"respiratory burst oxidase protein E (RbohE) / NADPH oxidase  similar to respiratory burst oxidase, putative / NADPH oxidase, putative [Arabidopsis thaliana] (TAIR:AT4G11230.1); similar to RBOHD (RESPIRATORY BURST OXIDASE PROTEIN D) [Arabidopsis thaliana]"
MSGI1_28906	TC13715	6.1	13.2	0.4	0.7	0	0	0	4.2	not assigned.unknown	not assigned.unknown
MSGI1_50334	TC13718	3.5	4.9	101.5	3.6	0	-4.8	-4.9	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"DIN10 (DARK INDUCIBLE 10); hydrolase, hydrolyzing O-glycosyl compounds encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. In"
MSGI1_31003	TC13743	21.7	0.3	2.8	0	-6.2	0	3	0	secondary metabolism.flavonoids.dihydroflavonols	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G10490.1); similar to 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABE85154.1); contains InterPro domain"
MSGI1_4575	TC13747	13.4	14.3	0	0	0	0	4.7	4.8	not assigned.unknown	not assigned.unknown
MSGI1_10225	TC13753	2.8	2.9	22.3	2	0	-3.5	-3	0	stress.abiotic.drought/salt	similar to HYP1 (HYPOTHETICAL PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G01100.1); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os12g0582800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067142.1);
MSGI1_20661	TC13762	0.2	0	19.9	5.2	0	0	-6.6	0	secondary metabolism.flavonoids.anthocyanins.anthocyanin 5-aromatic acyltransferase	transferase family protein  similar to transferase [Arabidopsis thaliana] (TAIR:AT1G03495.1); similar to anthocyanin acyltransferase [Phaseolus vulgaris] (GB:AAR13301.1); contains InterPro domain Transferase; (InterPro:IPR003480)
MSGI1_28561	TC13763	1.4	1.3	54.3	16.7	0	-1.7	-5.3	-3.7	not assigned.unknown	not assigned.unknown
MSGI1_26506	TC13783	2.4	2.7	18	16.1	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_18498	TC13788	1.8	0.8	15.5	0.7	0	-4.5	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_29869	TC13791	0.9	8.2	19.4	2.8	0	-2.8	-4.4	0	misc.cytochrome P450	"CYP71A22 (cytochrome P450, family 71, subfamily A, polypeptide 22); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71A22 (EC 1.14.-.-) (CYP71A22) [Arabidopsis Thaliana] (GB:Q9STL1); similar to CYP71A21 (cytochrome P450, family 71, s"
MSGI1_2346	TC13798	4	19.2	0.2	0	0	0	0	5.3	not assigned.unknown	not assigned.unknown
MSGI1_9186	TC138	14.3	18.7	0.1	0	0	0	7.2	5.2	not assigned.unknown	not assigned.unknown
MSGI1_28370	TC13805	0.7	0.5	6.2	30.4	0	2.3	0	-5.9	not assigned.unknown	not assigned.unknown
MSGI1_35831	TC13819	0.5	0.5	15.1	5.8	0	0	-4.9	0	RNA.regulation of transcription.WRKY domain transcription factor family	TTR1 (WRKY domain family protein 16); transcription factor Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. Identical to Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16)
MSGI1_35831	TC13819	0.5	0.5	15.1	5.8	0	0	-4.9	0	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to CSA1 (CONSTITUTIVE SHADE-AVOIDANCE1), ATP binding / protein binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT5G17880.1); similar to disease resistance protein (TIR-NBS-LR"
MSGI1_10110	TC1382	7	44.4	14.2	100.9	2.7	2.8	0	-1.2	transport.amino acids	"lysine and histidine specific transporter, putative  similar to LHT1 (LYSINE HISTIDINE TRANSPORTER 1), amino acid permease/ amino acid transporter [Arabidopsis thaliana] (TAIR:AT5G40780.1); similar to lysine and histidine specific transporter, putative ["
MSGI1_20660	TC13824	2.3	16.9	3.2	2.4	2.9	0	0	2.8	not assigned.unknown	not assigned.unknown
MSGI1_139	TC1383	14.5	20.3	49.2	13.8	0	-1.8	-1.8	0	minor CHO metabolism.galactose.galactokinases	"ARA1 (ARABINOSE SENSITIVE 1); ATP binding / galactokinase Similar to galactokinase. similar to galactokinase, putative [Arabidopsis thaliana] (TAIR:AT3G42850.1); similar to Os06g0702500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058491.1); simila"
MSGI1_42308	TC13853	0.1	0	18.9	13	0	0	-7.6	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_26057	TC13882	32.2	13.6	7.3	21	0	0	2.1	0	cell wall.cell wall proteins.AGPs	FLA1 (FLA1) fasciclin-like arabinogalactan-protein 1 (Fla1) Identical to Fasciclin-like arabinogalactan protein 1 precursor (FLA1) [Arabidopsis Thaliana] (GB:Q9FM65;GB:Q8L8T1); similar to FLA2 (FLA2) [Arabidopsis thaliana] (TAIR:AT4G12730.1); similar to p
MSGI1_2636	TC1390	112.3	241.4	133.4	222.2	1.1	0	0	0	RNA.regulation of transcription.MYB-related transcription factor family	myb family transcription factor  similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G19000.2); similar to putative DNA binding protein-like [Solanum tuberosum] (GB:ABB86258.1); contains InterPro domain Homeodomain-related; (InterP
MSGI1_44027	TC13938	0	0	36	31.5	0	0	-6.2	-6	not assigned.unknown	not assigned.unknown
MSGI1_4388	TC1394	35.3	78.2	50.3	61.1	1.1	0	0	0	protein.synthesis.misc ribososomal protein.BRIX	brix domain-containing protein  Identical to Brix domain-containing protein 1 homolog [Arabidopsis Thaliana] (GB:Q9LUG5;GB:Q8LCK0); similar to PREDICTED: brix domain containing 1 [Macaca mulatta] (GB:XP_001087115.1); similar to Os01g0513800 [Oryza sativa
MSGI1_98106	TC13947	3	7.9	19.6	5.4	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_37110	TC13952	13.7	7.4	41.5	6.2	0	-2.7	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_71671	TC13955	3.1	5.4	25.2	2.9	0	-3.1	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_51770	TC13969	5.7	9	26.2	6	0	-2.1	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_40609	TC13974	5.4	18.5	40.9	14.5	0	-1.5	-2.9	0	protein.postranslational modification	protein phosphatase 2C-related / PP2C-related  similar to protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT1G48040.1); similar to Protein phosphatase 2C [Medicago truncatula] (GB:ABE82399.1); contains InterPro domain Protein phosphatase 2C; (Int
MSGI1_13981	TC13977	25.1	22.7	0.1	0.1	0	0	8	7.8	not assigned.unknown	not assigned.unknown
MSGI1_25162	TC13991	11.8	4.5	22.2	4.7	0	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_23710	TC140	11.4	18.3	1.5	0.5	0	0	0	5.2	not assigned.unknown	not assigned.unknown
MSGI1_118088	TC14024	31.4	6.2	4	6.9	-2.3	0	3	0	not assigned.unknown	not assigned.unknown
MSGI1_118086	TC14027	23.1	6.1	3.6	7.4	0	0	2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_24110	TC14038	21.1	0.9	1	0.3	-4.6	0	4.4	0	"lipid metabolism.'exotics' (steroids, squalene etc)"	sulfotransferase family protein  similar to sulfotransferase family protein [Arabidopsis thaliana] (TAIR:AT5G07000.1); similar to Sulfotransferase [Medicago truncatula] (GB:ABE88692.1); contains InterPro domain Sulfotransferase; (InterPro:IPR000863)
MSGI1_45927	TC14055	0	0	13	7.5	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_36772	TC14062	4.6	5.8	30.7	18.4	0	0	-2.7	0	development.unspecified	"TOM2A (TOBAMOVIRUS MULTIPLICATION 2A) TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal, essential for efficient multiplication of tobacco mosaic viruses. similar to unknown protein [Arabidopsi"
MSGI1_60122	TC14064	7.3	15.9	0	0	0	0	0	5	transport.unspecified anions	anion exchange family protein  Identical to Boron transporter-like protein 2 [Arabidopsis Thaliana] (GB:Q9XI23); similar to anion exchanger [Arabidopsis thaliana] (TAIR:AT4G32510.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:A
MSGI1_47609	TC14065	55.8	29.1	4.9	0.8	0	0	3.5	5.2	not assigned.unknown	not assigned.unknown
MSGI1_79697	TC14071	50	172.3	38.4	133.7	1.8	1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_58920	TC14076	18.5	25.5	0.4	0	0	0	5.5	5.7	not assigned.unknown	not assigned.unknown
MSGI1_3083	TC1408	19.2	60.2	64.8	20.7	1.6	-1.6	-1.8	1.5	signalling.calcium	"calmodulin-binding family protein  similar to EDA39 (embryo sac development arrest 39), calmodulin binding [Arabidopsis thaliana] (TAIR:AT4G33050.3); similar to Os01g0570800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043374.1); similar to hypothe"
MSGI1_41311	TC14087	1.2	0.6	65.4	1.2	0	-5.8	-5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_57048	TC14090	87.8	110.7	55.7	46.3	0	0	0	1.3	not assigned.unknown	not assigned.unknown
MSGI1_6553	TC14092	3.8	2.6	176.9	1.6	0	-6.8	-5.5	0	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase	"NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE3) Encodes  9-<i>cis</i>-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chl"
MSGI1_34349	TC14093	1.8	0.4	23.9	0.9	0	-4.7	-3.7	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. similar to AP2 domain"
MSGI1_2110	TC1411	32.5	20.7	7.6	20.2	0	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_33655	TC14118	2	2.6	23.5	20.2	0	0	-3.6	-3	not assigned.unknown	not assigned.unknown
MSGI1_34348	TC14137	15.6	1.2	6.9	2.9	-3.7	0	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	"auxin-responsive protein, putative  similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G21210.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12778.1); contains InterPro domain Auxin responsive SAUR prot"
MSGI1_24503	TC14139	3.1	7	19.4	3.6	0	-2.4	-2.6	0	development.unspecified	ANAC074 (Arabidopsis NAC domain containing protein 74); transcription factor  similar to no apical meristem (NAM) family protein [Arabidopsis thaliana] (TAIR:AT2G24430.2); similar to salicylic acid-induced protein 19 [Capsicum annuum] (GB:AAQ75123.1); sim
MSGI1_24503	TC14139	3.1	7	19.4	3.6	0	-2.4	-2.6	0	RNA.regulation of transcription.NAC domain transcription factor family	ANAC074 (Arabidopsis NAC domain containing protein 74); transcription factor  similar to no apical meristem (NAM) family protein [Arabidopsis thaliana] (TAIR:AT2G24430.2); similar to salicylic acid-induced protein 19 [Capsicum annuum] (GB:AAQ75123.1); sim
MSGI1_24503	TC14139	3.1	7	19.4	3.6	0	-2.4	-2.6	0	cell wall	ANAC074 (Arabidopsis NAC domain containing protein 74); transcription factor  similar to no apical meristem (NAM) family protein [Arabidopsis thaliana] (TAIR:AT2G24430.2); similar to salicylic acid-induced protein 19 [Capsicum annuum] (GB:AAQ75123.1); sim
MSGI1_24503	TC14139	3.1	7	19.4	3.6	0	-2.4	-2.6	0	cell wall	ANAC074 (Arabidopsis NAC domain containing protein 74); transcription factor  similar to no apical meristem (NAM) family protein [Arabidopsis thaliana] (TAIR:AT2G24430.2); similar to salicylic acid-induced protein 19 [Capsicum annuum] (GB:AAQ75123.1); sim
MSGI1_4635	TC1415	24.7	11	142.6	20.5	0	-2.8	-2.5	0	"metal handling.binding, chelation and storage"	"ATFER1 (ferretin 1); ferric iron binding Encodes  a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Identical to Ferritin-1, chloroplast"
MSGI1_40607	TC14162	4.2	14.7	9.8	0.6	0	0	0	4.6	redox.glutaredoxins	glutaredoxin family protein  Identical to Glutaredoxin-C11 (AtGrxC11) (GRXC11) [Arabidopsis Thaliana] (GB:Q9LYC6); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT2G47870.1); similar to glutaredoxin family protein [Musa acuminata] (
MSGI1_60121	TC14164	24.4	23.3	59.7	29.1	0	0	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_65753	TC14171	4.3	12.7	0	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_65752	TC14172	1.3	1.5	21.3	11.9	0	0	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_47608	TC14185	5.6	11.6	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_81991	TC14189	5.4	15.6	31.5	22.7	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_80840	TC14194	0.7	2.4	16.7	9.5	0	0	-4.6	0	not assigned.unknown	not assigned.unknown
MSGI1_52272	TC14197	7.4	4.1	30.1	4.1	0	-2.9	-2	0	signalling.receptor kinases.DUF 26	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G00970.1); similar to putative receptor-like serine-threonine protein kinase [Solanum tuberosum] (GB:CAC84518.1); similar to putative receptor-like se
MSGI1_39936	TC142	13.5	24.5	0.4	0.3	0	0	5.1	6.4	not assigned.unknown	not assigned.unknown
MSGI1_58275	TC14201	0	0	11.5	12.4	0	0	-4.5	-4.6	stress.abiotic.heat	HSP70 (heat shock protein 70); ATP binding  similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G
MSGI1_6947	TC1421	11.6	49.8	99.1	25.6	2.1	-2	-3.1	0	development.unspecified	"YLS9 (YELLOW-LEAF-SPECIFIC GENE 9) Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine"
MSGI1_62473	TC14219	9.4	10.7	0	0.2	0	0	0	5.7	not assigned.unknown	not assigned.unknown
MSGI1_71217	TC14227	1.3	1.4	3.9	26	0	2.7	0	-4.2	not assigned.unknown	not assigned.unknown
MSGI1_51541	TC14231	0	0	16.8	19.2	0	0	-5.1	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_44430	TC14239	26.5	6.7	8.8	4.1	-2	0	0	0	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase IX	"protein kinase family protein  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G79620.1); similar to Os05g0371600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055357.1); similar to Os01g0929200"
MSGI1_12152	TC1424	93.5	103.6	150.3	45.4	0	-1.7	0	1.2	development.unspecified	nodulin MtN21 family protein  similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT4G08300.1); similar to Os10g0210500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064323.1); similar to unknown protein [Oryza sativa (japonica cult
MSGI1_12152	TC1424	93.5	103.6	150.3	45.4	0	-1.7	0	1.2	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_35828	TC14244	3.7	8.2	26.8	5.9	0	-2.2	-2.9	0	transport.metabolite transporters at the mitochondrial membrane	ATMBAC2/BAC2 (Arabidopsis mitochondrial basic amino acid carrier 2); L-ornithine transporter/ binding / carnitine:acyl carnitine antiporter encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosol similar
MSGI1_61468	TC14246	5.1	12.1	0.2	0.4	0	0	0	4.9	not assigned.unknown	not assigned.unknown
MSGI1_66106	TC14253	0	0	27.7	12.9	0	0	-5.8	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_10600	TC1426	9.7	23.3	39	30.6	0	0	-2	0	amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine.SAT	"AtSerat2;2 (SERINE ACETYLTRANSFERASE 1); serine O-acetyltransferase Encodes a mitochondrial serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. Identical to Serine acetyltransferase 3, m"
MSGI1_6003	TC1428	57	154.7	60.3	97.7	1.4	0	0	0	cell wall.cell wall proteins.AGPs	FLA11 (fasciclin-like arabinogalactan-protein 11)  Identical to Fasciclin-like arabinogalactan protein 11 precursor (FLA11) [Arabidopsis Thaliana] (GB:Q8LEJ6;GB:Q9LYW8); similar to FLA12 (fasciclin-like arabinogalactan-protein 12) [Arabidopsis thaliana] (
MSGI1_65750	TC14284	2	4.1	15.5	8.3	0	0	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_47839	TC14294	8	11.5	32.7	18.5	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_10966	TC1430	24.3	29.2	7.9	27.4	0	1.8	0	0	RNA.transcription	"NRPD2a (NUCLEAR RNA POLYMERASE D 2A); DNA binding / DNA-directed RNA polymerase This gene encodes the second largest, catalytic subunit of the nuclear DNA-dependent RNA polymerase IV (aka RNA polymerase D). The NRPD2 protein is found at nuclear foci that"
MSGI1_18097	TC14319	3	4.9	28.1	8.2	0	0	-3.2	0	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS11 (Arabidopsis thaliana trehalose phosphatase/synthase 11); transferase, transferring glycosyl groups Encodes an enzyme putatively involved in trehalose biosynthesis.  The protein has a trehalose synthase (TPS)-like domain that may or may not be ac"
MSGI1_59830	TC14334	0	0	7.5	17.6	0	0	0	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_28267	TC14338	0.2	0.6	11.6	13.9	0	0	-5.9	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_22545	TC14353	1.4	4.1	6.3	24.1	0	1.9	0	-2.6	secondary metabolism.flavonoids.flavonols	"SRG1 (SENESCENCE-RELATED GENE 1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors Encodes a novel member of the Fe(II"
MSGI1_22545	TC14353	1.4	4.1	6.3	24.1	0	1.9	0	-2.6	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_2462	TC1436	64.8	17.1	49.6	32.1	-1.9	0	0	0	secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA reductase	"HMG1 (3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE) Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in l"
MSGI1_17320	TC1437	48.8	17.3	374.8	14.8	-1.5	-4.7	-2.9	0	stress.abiotic.drought/salt	RCI2B (RARE-COLD-INDUCIBLE 2B)  Identical to Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B) (RCI2B) [Arabidopsis Thaliana] (GB:Q9ZNS6;GB:Q9M9K9); similar to RCI2A (RARE-COLD-INDUCIBLE 2A) [Arabidopsis thaliana] (TAIR:AT3G05
MSGI1_17320	TC1437	48.8	17.3	374.8	14.8	-1.5	-4.7	-2.9	0	stress.abiotic.cold	RCI2B (RARE-COLD-INDUCIBLE 2B)  Identical to Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B) (RCI2B) [Arabidopsis Thaliana] (GB:Q9ZNS6;GB:Q9M9K9); similar to RCI2A (RARE-COLD-INDUCIBLE 2A) [Arabidopsis thaliana] (TAIR:AT3G05
MSGI1_83879	TC14371	4.4	31.2	5.4	4.6	2.8	0	0	2.8	not assigned.unknown	not assigned.unknown
MSGI1_47606	TC14374	5.4	5.9	29.2	4.3	0	-2.8	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_29568	TC1438	11.3	4.2	97.6	3	0	-5	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_46796	TC14380	15.3	3.7	16.8	0.6	0	-4.8	0	0	transport.Major Intrinsic Proteins.TIP	GAMMA-TIP3/TIP1;3 (tonoplast intrinsic protein 1;3); water channel  Identical to Putative aquaporin TIP1.3 (Tonoplast intrinsic protein 1.3) (Gamma- tonoplast intrinsic protein 3) (Gamma-TIP3) (TIP1.3) [Arabidopsis Thaliana] (GB:O82598); similar to GAMMA
MSGI1_46796	TC14380	15.3	3.7	16.8	0.6	0	-4.8	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_46796	TC14380	15.3	3.7	16.8	0.6	0	-4.8	0	0	cell wall	GAMMA-TIP3/TIP1;3 (tonoplast intrinsic protein 1;3); water channel  Identical to Putative aquaporin TIP1.3 (Tonoplast intrinsic protein 1.3) (Gamma- tonoplast intrinsic protein 3) (Gamma-TIP3) (TIP1.3) [Arabidopsis Thaliana] (GB:O82598); similar to GAMMA
MSGI1_64655	TC14389	0	0	19.1	25.6	0	0	-5.3	-5.7	not assigned.unknown	not assigned.unknown
MSGI1_45724	TC14391	91.8	1.8	14.4	2.8	-5.7	0	2.7	0	hormone metabolism.gibberelin.induced-regulated-responsive-activated	"gibberellin-responsive protein, putative  similar to GASA4 (GAST1 PROTEIN HOMOLOG 4) [Arabidopsis thaliana] (TAIR:AT5G15230.1); similar to Gip1-like protein [Populus tomentosa] (GB:AAV84588.1); contains InterPro domain Gibberellin regulated protein; (Int"
MSGI1_45724	TC14391	91.8	1.8	14.4	2.8	-5.7	0	2.7	0	cell wall	"gibberellin-responsive protein, putative  similar to GASA4 (GAST1 PROTEIN HOMOLOG 4) [Arabidopsis thaliana] (TAIR:AT5G15230.1); similar to Gip1-like protein [Populus tomentosa] (GB:AAV84588.1); contains InterPro domain Gibberellin regulated protein; (Int"
MSGI1_56251	TC14393	0.5	0.8	9.5	14.8	0	0	0	-4.2	signalling.light	PFT1 (PHYTOCHROME AND FLOWERING TIME 1) Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions.  Mutants are hypo-responsive to far-red and hyper-responsive to red l
MSGI1_14303	TC144	16.2	34.4	0.7	1.8	0	0	4.5	4.3	stress.biotic	"disease resistance protein (CC-NBS-LRR class), putative  Identical to Probable disease resistance protein At1g61180 [Arabidopsis Thaliana] (GB:Q940K0;GB:O22728); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (T"
MSGI1_60120	TC14418	0	0	18.4	14.9	0	0	-5.2	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_32832	TC14422	0	0	19.8	23.9	0	0	-5.3	-5.6	not assigned.unknown	not assigned.unknown
MSGI1_16518	TC14432	0.1	0.4	150.7	0.8	0	-7.6	-10.6	0	not assigned.unknown	not assigned.unknown
MSGI1_2240	TC1444	6.9	7.8	46.5	31.8	0	0	-2.8	-2	DNA.synthesis/chromatin structure	nucleolar protein-related  similar to calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G34070.1); similar to PREDICTED: similar to CG5149-PA [Canis familiaris] (GB:XP_546801.2); similar to Os12g0157200 [Oryza sativa (japonica cultivar-group)] (GB:NP_00
MSGI1_74016	TC14440	63.3	2.8	6.7	1.1	-4.5	0	3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_47189	TC14441	2.1	2.6	19	12.2	0	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_54677	TC14457	64	391.6	89	264.8	2.6	1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_32058	TC14463	6.5	15	0.1	0.6	0	0	0	4.6	stress.biotic	RPM1 (RESISTANCE TO P. SYRINGAE PV MACULICOLA 1) Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and
MSGI1_23862	TC14472	1.9	2.8	21.6	12.1	0	0	-3.5	0	misc.cytochrome P450	"CYP707A4 (cytochrome P450, family 707, subfamily A, polypeptide 4); oxygen binding Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. similar to CYP707A1 (cytochrome P450, family 707, subfam"
MSGI1_32267	TC14474	11.5	18.7	42.9	40.4	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_6661	TC1448	57.8	41.9	27.1	68.9	0	1.3	1.1	0	cell wall	ATPHB3 (PROHIBITIN 3) prohibitin 3 similar to ATPHB4 (PROHIBITIN 4) [Arabidopsis thaliana] (TAIR:AT3G27280.1); similar to mitochondrial prohibitin 1 [Petunia x hybrida] (GB:AAW83328.1); similar to PHB1 [Nicotiana benthamiana] (GB:AAZ30376.1); contains Int
MSGI1_15104	TC14484	39	83.7	95.1	120.5	1.1	0	-1.3	0	hormone metabolism.cytokinin.signal transduction	"AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3); histidine phosphotransfer kinase Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs).  AHPs function as redundant positive regulators of cytokinin signaling.  Membe"
MSGI1_15104	TC14484	39	83.7	95.1	120.5	1.1	0	-1.3	0	signalling.phosphorelay	"AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3); histidine phosphotransfer kinase Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs).  AHPs function as redundant positive regulators of cytokinin signaling.  Membe"
MSGI1_34012	TC14487	7	11.9	8.1	28.4	0	1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_21891	TC14494	12	15.3	40.1	7.6	0	-2.4	-1.7	0	hormone metabolism.ethylene.signal transduction	ATERF-9/ATERF9/ERF9 (ERF domain protein 9); DNA binding / transcription factor/ transcriptional repressor encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2
MSGI1_21891	TC14494	12	15.3	40.1	7.6	0	-2.4	-1.7	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	ATERF-9/ATERF9/ERF9 (ERF domain protein 9); DNA binding / transcription factor/ transcriptional repressor encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2
MSGI1_25901	TC14518	4.8	4.9	40.9	1.6	0	-4.7	-3.1	0	"RNA.regulation of transcription.HSF,Heat-shock transcription factor family"	AT-HSFC1 (Arabidopsis thaliana heat shock transcription factor C1); DNA binding / transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor C-1 (AtHsfC1) (HSFC1) [Arabidopsis Thaliana] (GB:
MSGI1_25901	TC14518	4.8	4.9	40.9	1.6	0	-4.7	-3.1	0	stress.abiotic.heat	AT-HSFC1 (Arabidopsis thaliana heat shock transcription factor C1); DNA binding / transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor C-1 (AtHsfC1) (HSFC1) [Arabidopsis Thaliana] (GB:
MSGI1_21140	TC14537	139.5	92.8	66.7	87.1	0	0	1.1	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L27 (RPL27C)  Identical to 60S ribosomal protein L27-3 (RPL27C) [Arabidopsis Thaliana] (GB:P51419;GB:O23354); similar to 60S ribosomal protein L27 (RPL27B) [Arabidopsis thaliana] (TAIR:AT3G22230.1); similar to Ribosomal protein L27e;
MSGI1_12041	TC1454	39.2	41.9	56.3	14.9	0	-1.9	0	1.5	signalling.calcium	"calcium-binding protein, putative  similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G73630.1); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE81417.1); contains InterPro domain EF-Hand type; (InterPro:IPR01199"
MSGI1_21752	TC14547	62.3	39.2	22.7	56	0	1.3	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_23238	TC14550	13.6	12.8	0	0	0	0	4.8	4.7	RNA.regulation of transcription.NAC domain transcription factor family	ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding. Identical to NAC domain-containing protein 2 (
MSGI1_23238	TC14550	13.6	12.8	0	0	0	0	4.8	4.7	development.unspecified	ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding. Identical to NAC domain-containing protein 2 (
MSGI1_4202	TC14555	28.4	35.3	0.2	0	0	0	7.1	6.1	not assigned.unknown	not assigned.unknown
MSGI1_10599	TC14557	117.4	321.7	1.4	1.2	1.5	0	6.4	8.1	not assigned.unknown	not assigned.unknown
MSGI1_4387	TC14559	34	46.2	0.1	0	0	0	8.4	6.5	not assigned.unknown	not assigned.unknown
MSGI1_4193	TC1456	36.1	13.2	109.5	5.6	-1.5	-4.3	-1.6	0	protein.degradation.cysteine protease	"cysteine proteinase, putative  similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G48350.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (Int"
MSGI1_10911	TC1457	221.5	113.5	93.9	118.8	0	0	1.2	0	protein.synthesis.misc ribososomal protein	"40S ribosomal protein S15A (RPS15aF)  Identical to 40S ribosomal protein S15a-1 (RPS15AF) [Arabidopsis Thaliana] (GB:P42798;GB:Q7GD83); similar to RPS15A (RIBOSOMAL PROTEIN S15A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G07770."
MSGI1_6784	TC1458	24.3	80.8	90.8	46.3	1.7	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_29867	TC14592	0	0	19.5	20.5	0	0	-5.3	-5.4	cell.cycle.peptidylprolyl isomerase	"ROF1 (ROTAMASE FKBP 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase Encodes a a high molecular weight member of the FK506 binding protein (FKBP) family.  It has three FKBP12-like domains, tetratricopeptide repeats, and a puta"
MSGI1_20046	TC14594	9.1	13.6	0.3	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_21067	TC14597	0	0	29.8	38.3	0	0	-5.9	-6.3	not assigned.unknown	not assigned.unknown
MSGI1_28903	TC14598	8.2	20.1	1	0.6	0	0	0	5.1	cell wall	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39020.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39000.1); similar to protein kinase family protein [Arabidopsis t
MSGI1_28903	TC14598	8.2	20.1	1	0.6	0	0	0	5.1	signalling.receptor kinases.Catharanthus roseus-like RLK1	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39020.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39000.1); similar to protein kinase family protein [Arabidopsis t
MSGI1_24109	TC14599	10.2	11.8	0.1	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_36222	TC146	13	17.6	0	0	0	0	4.7	5.1	not assigned.unknown	not assigned.unknown
MSGI1_38931	TC14601	12	19.3	0	0	0	0	4.6	5.3	not assigned.unknown	not assigned.unknown
MSGI1_28266	TC14633	3.5	22.5	2.1	10.4	2.7	0	0	0	lipid metabolism.FA synthesis and FA elongation.beta ketoacyl CoA synthase	beta-ketoacyl-CoA synthase family protein  Identical to 3-ketoacyl-CoA synthase 3 (EC 2.3.1.-) (KCS-3) (Very-long-chain fatty acid condensing enzyme 3) (VLCFA condensing enzyme 3) (KCS3) [Arabidopsis Thaliana] (GB:Q9LQP8); similar to beta-ketoacyl-CoA sy
MSGI1_54921	TC14648	10.7	11.8	35.2	13.4	0	0	-1.7	0	transporter.sugars	"MSS1 (SUGAR TRANSPORT PROTEIN 13); carbohydrate transporter/ hexose:hydrogen symporter/ high-affinity hydrogen:glucose transporter/ sugar porter Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter"
MSGI1_41146	TC14669	0	0	45.9	20.1	0	0	-6.5	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_8580	TC14682	46.7	41.5	15.2	48.3	0	1.7	1.6	0	cell wall.pectin*esterases.misc	"pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT3G43270.1); similar to Pectinesterase PPE8B precursor (Pectin methylesterase) (PE) (GB:Q43062); contains InterPro domain Virulence factor, pectin lyase"
MSGI1_16650	TC14693	6.3	27.6	25.3	18.4	2.1	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_25747	TC14694	0.9	3.7	26	18.9	0	0	-4.9	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_30248	TC147	16.2	23.5	0.7	0	0	0	4.5	5.6	not assigned.unknown	not assigned.unknown
MSGI1_45924	TC14731	10.5	12.6	0.3	0	0	0	5.1	4.7	not assigned.unknown	not assigned.unknown
MSGI1_36660	TC14740	5.8	19.9	0.3	0.4	0	0	0	5.6	not assigned.unknown	not assigned.unknown
MSGI1_30713	TC14741	6	14.1	0.1	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_87753	TC14755	3.4	0.2	17.8	0.5	0	-5.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_5443	TC1476	40.7	93.9	133.5	43	1.2	-1.6	-1.7	1.1	not assigned.unknown	not assigned.unknown
MSGI1_62472	TC14760	1	1.5	13.3	10.3	0	0	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_45923	TC14766	29.1	13	3.1	5.1	0	0	3.2	0	nucleotide metabolism.deoxynucleotide metabolism.ribonucleoside-diphosphate reductase	TSO2 (TSO2); ribonucleoside-diphosphate reductase Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in
MSGI1_76942	TC14783	6.6	8.6	33.3	13.9	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_73560	TC14793	6.2	9.7	25.1	12.8	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_107010	TC14816	3.2	11.8	20.1	5.4	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_641	TC1484	50.2	20.2	17.4	10.4	-1.3	0	1.5	0	cell wall	"XYL4 (beta-xylosidase 4); hydrolase, hydrolyzing O-glycosyl compounds Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases. similar to BXL1 (BETA-XYLOSIDASE 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (T"
MSGI1_61822	TC14842	2.8	5	13	24.5	0	0	0	-2.3	protein.postranslational modification	PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1); protein-L-isoaspartate (D-aspartate) O-methyltransferase encodes protein-L-isoaspartate methyltransferase Identical to Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) (Protein- beta-aspartate m
MSGI1_7845	TC14854	1.5	5	80.3	4.2	0	-4.3	-5.7	0	amino acid metabolism.degradation.aspartate family.lysine	LKR (SACCHAROPINE DEHYDROGENASE)  Identical to Alpha-aminoadipic semialdehyde synthase (LKR/SDH) (cAt-LKR/SDH) [Includes: Lysine ketoglutarate reductase (EC 1.5.1.8) (LKR); Saccharopine dehydrogenase (EC 1.5.1.9) (SDH) (cAt-SDH)] (LKR/SDH) [Arabidopsis T
MSGI1_2693	TC1488	149.6	71.7	91.6	123.7	-1.1	0	0	0	amino acid metabolism.degradation.serine-glycine-cysteine group.glycine	"aminomethyltransferase, putative  Identical to Aminomethyltransferase, mitochondrial precursor (EC 2.1.2.10) (Glycine cleavage system T protein) (GCVT) (GDCST) [Arabidopsis Thaliana] (GB:O65396;GB:Q42123); similar to unknown protein [Arabidopsis thaliana"
MSGI1_39230	TC14889	2.8	10.6	25.5	3.3	0	-2.9	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_33653	TC14897	0	0.1	11.9	13.3	0	0	-4.6	-7.1	not assigned.unknown	not assigned.unknown
MSGI1_73559	TC14921	49.5	1.9	25.3	8.1	-4.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_62471	TC14924	3.8	18.9	7.4	8.2	2.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_73558	TC14934	44.3	20.5	8.7	7.5	0	0	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_75944	TC14937	32.9	28	36.2	57.9	0	0	0	-1	not assigned.unknown	not assigned.unknown
MSGI1_46972	TC14940	4.1	5.1	38.9	15.5	0	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_46971	TC14944	4.2	11.5	23.9	8.9	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_20173	TC14950	55.4	41.7	24.1	40.1	0	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_16018	TC1496	43.4	38	18	45.1	0	1.3	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_41718	TC14967	4.1	6.8	22.9	7.1	0	0	-2.5	0	nucleotide metabolism.degradation	FAC1 (EMBRYONIC FACTOR1); AMP deaminase Encodes a protein with in vitro AMP deaminase activity that is involved in embryogenesis. Homozygous mutant embryos fail to develop past the zygote stage. Identical to AMP deaminase (EC 3.5.4.6) (AtAMPD) (Protein EM
MSGI1_89116	TC14985	1.1	2.9	17.1	2.4	0	-2.8	-4	0	hormone metabolism.abscisic acid.synthesis-degradation.degradation. 8-hydroxylase	"CYP707A1 (cytochrome P450, family 707, subfamily A, polypeptide 1); oxygen binding Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. CYP707A1 appears to play an important role in determinin"
MSGI1_13576	TC1499	69.7	35.4	28.5	56.2	0	0	1.3	0	protein.synthesis.misc ribososomal protein	RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome Encodes cytoplasmic ribosomal protein L18. Identical to 60S ribosomal protein L18-2 (RPL18B) [Arabidopsis Thaliana] (GB:P42791;GB:Q9M9W4); similar to 60S ribosomal protein L18 (RPL18C) [Ara
MSGI1_55436	TC14993	13.4	2	0.9	1.2	0	0	3.9	0	secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase	"CHS (CHALCONE SYNTHASE); naringenin-chalcone synthase Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids.  Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of"
MSGI1_2151	TC1500	20	102.4	134.5	67.2	2.4	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_111291	TC15017	3.3	0.2	30.1	1.4	0	-4.4	-3.2	0	transporter.sugars	"ATINT2 (INOSITOL TRANSPORTER 2); carbohydrate transporter/ sugar porter  Identical to Probable inositol transporter 2 (INT2) [Arabidopsis Thaliana] (GB:Q9C757); similar to ATINT3 (INOSITOL TRANSPORTER 3), carbohydrate transporter/ sugar porter [Arabidops"
MSGI1_48288	TC15022	7.1	9.5	20.7	32.8	0	0	0	-1.8	transport.amino acids	"AAP1 (AMINO ACID PERMEASE 1); amino acid permease neutral amino acid transporter expressed in seeds similar to AAP6 (AMINO ACID PERMEASE 6), amino acid permease [Arabidopsis thaliana] (TAIR:AT5G49630.1); similar to AAP8 (amino acid permease 8), amino aci"
MSGI1_58268	TC15025	30.5	27.5	10.6	41	0	2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_4277	TC1505	6.2	31.7	15.2	11.9	2.4	0	0	0	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  Identical to RING-H2 finger protein ATL5H precursor (ATL5H) [Arabidopsis Thaliana] (GB:Q8LGA5); similar to ATL6 (Arabidopsis T?xicos en Levadura 6), protein binding / zinc ion binding [Arabidopsis thal"
MSGI1_54919	TC15050	3.6	6.6	21.5	6.8	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_51263	TC15057	0.3	0.2	15.2	13.2	0	0	-5.7	-6	protein.aa activation.lysine-tRNA ligase	"lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative  Identical to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) [Arabidopsis Thaliana] (GB:Q9ZPI1); similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Ar"
MSGI1_90523	TC15059	8.7	6.7	33	23.1	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_2699	TC1506	53.7	103.4	31.6	27.5	0	0	0	1.9	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_2699	TC1506	53.7	103.4	31.6	27.5	0	0	0	1.9	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	ATMYC2 (JASMONATE INSENSITIVE 1); DNA binding / transcription factor Encodes a 68 kD MYC-related transcriptional activator with a typical DNA binding domain of a basic region helix-loop-helix leucine zipper motif. Its transcription is induced by dehydrat
MSGI1_2699	TC1506	53.7	103.4	31.6	27.5	0	0	0	1.9	protein.postranslational modification	ATMYC2 (JASMONATE INSENSITIVE 1); DNA binding / transcription factor Encodes a 68 kD MYC-related transcriptional activator with a typical DNA binding domain of a basic region helix-loop-helix leucine zipper motif. Its transcription is induced by dehydrat
MSGI1_50805	TC15081	1.9	5.5	17.1	1	0	-4.1	-3.2	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. simi"
MSGI1_5675	TC15083	2.8	7.2	27.1	4.9	0	-2.5	-3.3	0	transport.misc	xanthine/uracil permease family protein  similar to xanthine/uracil/vitamin C permease family protein [Arabidopsis thaliana] (TAIR:AT5G50300.1); similar to Os05g0332600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055224.1); similar to hypothetical
MSGI1_87096	TC15089	20.5	17.3	36.9	10.9	0	-1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_19702	TC151	22.9	39.8	12.7	9.3	0	0	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_34166	TC15122	0.1	0.2	19.7	8.5	0	0	-7.6	0	not assigned.unknown	not assigned.unknown
MSGI1_61464	TC15132	47.9	1	16.5	2.1	-5.6	-3	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_87095	TC15152	42.1	6.9	25.3	16.4	-2.6	0	0	0	transport.Major Intrinsic Proteins.unspecified	NIP4;2/NLM5 (NOD26-LIKE INTRINSIC PROTEIN 4;2); water channel  Identical to Probable aquaporin NIP4.2 (NOD26-like intrinsic protein 4.2) (Nodulin- 26-like major intrinsic protein 5) (AtNLM5) (Protein NLM5) (NodLikeMip5) (NIP4.2) [Arabidopsis Thaliana] (G
MSGI1_87095	TC15152	42.1	6.9	25.3	16.4	-2.6	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_78542	TC15153	13.8	47.9	31.6	44.6	1.8	0	0	0	transport.sulphate	"AST91 (SULFATE TRANSPORTER 91); sulfate transporter Encodes AST91 mRNA for sulfate transporter. Identical to Probable sulfate transporter 3.3 (AST91) (SULTR3;3) [Arabidopsis Thaliana] (GB:Q9SXS2;GB:O49307); similar to SULTR3,4 (SULTR3,4), sulfate transpo"
MSGI1_23237	TC15175	4.4	13.7	0.8	0.7	0	0	0	4.3	signalling.receptor kinases.DUF 26	"protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23150.1); similar to CRK10 (CYSTEINE-RICH RLK10), kinase [Arabidopsis thaliana] (TAIR:AT4G23180.1); similar to CRK6 (CYSTEINE-RICH RLK 6), kinase [Ar"
MSGI1_8773	TC152	15.6	24.7	1.8	1.9	0	0	3.1	3.7	not assigned.unknown	not assigned.unknown
MSGI1_13011	TC15201	4.9	2.3	35	5.1	0	-2.8	-2.8	0	misc.acid and other phosphatases	"PAP8 (PURPLE ACID PHOSPHATASE PRECURSOR); acid phosphatase/ protein serine/threonine phosphatase Encodes a purple acid phosphatase (PAP) belonging to the low molecular weight plant PAP group. similar to ATPAP3/PAP3 (purple acid phosphatase 3), acid phosp"
MSGI1_60752	TC15209	9.7	16.4	0.2	0	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_98906	TC15211	0.2	0	14.9	9	0	0	-6.2	0	cell wall	"peroxidase, putative  Identical to Peroxidase 31 precursor (EC 1.11.1.7) (Atperox P31) (ATP41) (PER31) [Arabidopsis Thaliana] (GB:Q9LHA7;GB:Q94CB9); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G40150.1); similar to Haem peroxidase, pl"
MSGI1_98906	TC15211	0.2	0	14.9	9	0	0	-6.2	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 31 precursor (EC 1.11.1.7) (Atperox P31) (ATP41) (PER31) [Arabidopsis Thaliana] (GB:Q9LHA7;GB:Q94CB9); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G40150.1); similar to Haem peroxidase, pl"
MSGI1_24108	TC15213	12.6	0.1	14.8	5.3	-7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_35425	TC15220	4.9	22.5	0.3	0.3	2.2	0	0	6.2	not assigned.unknown	not assigned.unknown
MSGI1_45281	TC15224	8.6	33.5	11.7	7.3	2	0	0	2.2	not assigned.unknown	not assigned.unknown
MSGI1_90521	TC15230	18.4	8.8	17.7	42.1	0	1.3	0	-2.3	protein.targeting.mitochondria	"OEP16 (OUTER ENVELOPE PROTEIN 16); protein translocase Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A.  Predominantly expressed in leaves and is also inducible by cold treatment"
MSGI1_97272	TC15233	11	14.1	0	0	0	0	4.5	4.8	not assigned.unknown	not assigned.unknown
MSGI1_3340	TC1524	43.2	9.3	56.2	28.7	-2.2	0	0	0	stress.abiotic.unspecified	"pollen Ole e 1 allergen and extensin family protein  similar to CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN), lipid binding [Arabidopsis thaliana] (TAIR:AT3G22120.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96850.1); contains InterPro"
MSGI1_3539	TC1525	261.9	503.5	256.9	200	0	0	0	1.3	signalling.in sugar and nutrient physiology	"phosphate-responsive protein, putative  similar to phosphate-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT5G09440.1); similar to erg-1 [Solanum tuberosum] (GB:AAP42136.1); contains InterPro domain Phosphate-induced protein 1 conserved regi"
MSGI1_3539	TC1525	261.9	503.5	256.9	200	0	0	0	1.3	cell wall	"phosphate-responsive protein, putative  similar to phosphate-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT5G09440.1); similar to erg-1 [Solanum tuberosum] (GB:AAP42136.1); contains InterPro domain Phosphate-induced protein 1 conserved regi"
MSGI1_43200	TC15253	0.7	0.6	13.3	14.4	0	0	-4.2	-4.6	cell.organisation	"kinesin motor family protein  similar to ATKINESIN-13A/KINESIN-13A, microtubule motor [Arabidopsis thaliana] (TAIR:AT3G16630.2); similar to BY-2 kinesin-like protein 10 [Nicotiana tabacum] (GB:BAB40710.1); contains InterPro domain Kinesin, motor region;"
MSGI1_86424	TC15264	9.9	12	26.4	2.8	0	-3.2	0	0	protein.degradation.aspartate protease	"aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G45120.1); similar to Peptidase aspartic, active site [Medicago truncatula] (GB:ABE80893.1); contains InterPro domain Peptidase A1, pepsin; (Int"
MSGI1_32618	TC15289	16.4	2.4	6.6	1.8	-2.8	0	0	0	signalling.calcium	calmodulin-binding protein  similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT4G31000.1); similar to Os02g0562300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047151.1); similar to calmodulin-binding protein (GB:AAB37246.1); simil
MSGI1_4574	TC1529	43.7	72.8	26.2	84.6	0	1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_6039	TC1530	33.6	70.9	28.1	93.7	1.1	1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_44424	TC15323	5.3	24.4	5.5	26.4	2.2	2.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_61820	TC15334	17.7	2.3	24.3	14.8	-2.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_73556	TC15339	5.4	2.5	15.5	1.5	0	-3.4	0	0	transport.misc	auxin efflux carrier family protein  similar to auxin:hydrogen symporter [Arabidopsis thaliana] (TAIR:AT2G17500.4); similar to Auxin Efflux Carrier [Medicago truncatula] (GB:ABE78073.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776)
MSGI1_73556	TC15339	5.4	2.5	15.5	1.5	0	-3.4	0	0	hormone metabolism.auxin.signal transduction	auxin efflux carrier family protein  similar to auxin:hydrogen symporter [Arabidopsis thaliana] (TAIR:AT2G17500.4); similar to Auxin Efflux Carrier [Medicago truncatula] (GB:ABE78073.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776)
MSGI1_5349	TC1534	211	65.2	101	152.4	-1.7	0	1.1	-1.2	RNA.RNA binding	"RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding encodes a chloroplast RNA-binding protein Identical to 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) (RBP31) [A"
MSGI1_5349	TC1534	211	65.2	101	152.4	-1.7	0	1.1	-1.2	RNA.regulation of transcription.unclassified	"RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding encodes a chloroplast RNA-binding protein Identical to 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) (RBP31) [A"
MSGI1_16966	TC15353	26.8	36.9	70.5	44.7	0	0	-1.4	0	cell wall.precursor synthesis.MUR4	"NAD-dependent epimerase/dehydratase family protein  Identical to Putative UDP-arabinose 4-epimerase 3 (EC 5.1.3.5) (UDP-D-xylose 4- epimerase 3) [Arabidopsis Thaliana] (GB:Q9SUN3); similar to MUR4 (MURUS 4), catalytic [Arabidopsis thaliana] (TAIR:AT1G306"
MSGI1_33652	TC15354	6	7.2	26.8	12.7	0	0	-2.2	0	protein.postranslational modification	"protein phosphatase 2C, putative / PP2C, putative  similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT1G22280.1); similar to H0815C01.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67186.1); contains InterPro dom"
MSGI1_77	TC15355	46.2	62.6	80.7	34.8	0	-1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_12400	TC15358	9	11.6	42.7	16.7	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_6132	TC15361	18	30.2	49.1	25.8	0	0	-1.4	0	cell wall.precursor synthesis.MUR4	"MUR4 (MURUS 4); catalytic encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-reside"
MSGI1_48713	TC15365	0.5	0.8	20.2	30	0	0	-5.3	-5.2	cell wall.cell wall proteins.HRGP	hydroxyproline-rich glycoprotein family protein  similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT3G22440.1); similar to putative hydroxyproline-rich glycoprotein [Oryza sativa (japonica cultivar-group)] (GB:BAC836
MSGI1_7239	TC15366	331.6	135.4	185.6	262.5	-1.3	0	0	0	PS.lightreaction.other electron carrier (ox/red).plastocyanin	"DRT112 (DNA-damage-repair/toleration protein 112); copper ion binding / electron carrier recombination and DNA-damage resistance protein (DRT112) Identical to Plastocyanin major isoform, chloroplast precursor (DNA-damage- repair/toleration protein DRT112"
MSGI1_971	TC15368	70.1	22.1	17.8	33.2	-1.7	0	2	0	transport.metabolite transporters at the mitochondrial membrane	"DIT1 (DICARBOXYLATE TRANSPORTER 1); oxoglutarate:malate antiporter  similar to DCT/DIT2.1 (DICARBOXYLATE TRANSPORT), oxoglutarate:malate antiporter [Arabidopsis thaliana] (TAIR:AT5G64290.1); similar to putative plastidic 2-oxoglutarate/malate translocato"
MSGI1_23860	TC15370	1.8	2.6	18.4	8	0	0	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_931	TC15380	75.5	59.4	34.5	18.6	0	0	1.1	1.7	not assigned.unknown	not assigned.unknown
MSGI1_87093	TC15395	5.2	6.6	13.6	27.8	0	0	0	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_10341	TC15399	2.4	20.7	11.2	26.3	3.1	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_10341	TC15399	2.4	20.7	11.2	26.3	3.1	0	0	0	hormone metabolism.ethylene.synthesis-degradation	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT5G59530.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain ATPase, F1/V1/A1 com"
MSGI1_54918	TC154	28.6	60.1	0.8	0.2	1.1	0	5.2	8.2	not assigned.unknown	not assigned.unknown
MSGI1_3838	TC15402	13.1	36.3	34.3	35.5	1.5	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_3838	TC15402	13.1	36.3	34.3	35.5	1.5	0	0	0	redox.ascorbate and glutathione	"2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT3G61400.1); similar to unknown ["
MSGI1_3838	TC15402	13.1	36.3	34.3	35.5	1.5	0	0	0	hormone metabolism.ethylene.synthesis-degradation	"2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT3G61400.1); similar to unknown ["
MSGI1_8105	TC15403	36.7	15.5	37	46	0	0	0	-1.6	cell.cycle.peptidylprolyl isomerase	ROC2 (rotamase CyP 2); peptidyl-prolyl cis-trans isomerase rotamase cyclophilin 2 (ROC2) exhibiting peptidyl-prolyl cis-trans isomerase activity involved in signal transduction. Identical to Peptidyl-prolyl cis-trans isomerase CYP19-3 (EC 5.2.1.8) (PPIas
MSGI1_20323	TC1541	141.9	104.4	35.2	89	0	1.3	2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L26 (RPL26B)  Identical to 60S ribosomal protein L26-2 (RPL26B) [Arabidopsis Thaliana] (GB:Q9FJX2); similar to 60S ribosomal protein L26 (RPL26A) [Arabidopsis thaliana] (TAIR:AT3G49910.1); similar to Ribosomal protein L24/L26 [Medic
MSGI1_114843	TC15419	48.9	29.3	18.8	43.9	0	1.2	1.4	0	protein.synthesis.elongation	"LOS1 (Low expression of osmotically responsive genes 1); translation elongation factor/ translation factor, nucleic acid binding encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene s"
MSGI1_15582	TC15426	42.2	42.2	140.6	82.6	0	0	-1.7	0	misc.peroxidases	PRXR1 (peroxidase 42); peroxidase Encodes AT4g21960 (AT4g21960/T8O5_170). Identical to Peroxidase 42 precursor (EC 1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b) (PER42) [Arabidopsis Thaliana] (GB:Q9SB81;GB:Q41937;GB:Q42579;GB:Q43730); similar to peroxida
MSGI1_53610	TC15428	0	0	21	19.4	0	0	-5.4	-5.3	not assigned.unknown	not assigned.unknown
MSGI1_28997	TC15431	786.6	905.1	396.2	637.6	0	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_13607	TC15435	1098.8	1145.6	538.3	893	0	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_2477	TC15437	328	358.7	1097.2	486.3	0	-1.2	-1.7	0	misc.peroxidases	PRXR1 (peroxidase 42); peroxidase Encodes AT4g21960 (AT4g21960/T8O5_170). Identical to Peroxidase 42 precursor (EC 1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b) (PER42) [Arabidopsis Thaliana] (GB:Q9SB81;GB:Q41937;GB:Q42579;GB:Q43730); similar to peroxida
MSGI1_2477	TC15437	328	358.7	1097.2	486.3	0	-1.2	-1.7	0	cell wall	PRXR1 (peroxidase 42); peroxidase Encodes AT4g21960 (AT4g21960/T8O5_170). Identical to Peroxidase 42 precursor (EC 1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b) (PER42) [Arabidopsis Thaliana] (GB:Q9SB81;GB:Q41937;GB:Q42579;GB:Q43730); similar to peroxida
MSGI1_21405	TC15440	274.6	137.3	123.2	133.5	0	0	1.2	0	PS.lightreaction.photosystem II.LHC-II	"LHCB6 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding Lhcb6 protein (Lhcb6), light harvesting complex of photosystem II. similar to LHCA6 (Photosystem I light harvesting complex gene 6), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G19150.1);"
MSGI1_6274	TC15441	147	165.1	584	235.3	0	-1.3	-2	0	misc.peroxidases	PRXR1 (peroxidase 42); peroxidase Encodes AT4g21960 (AT4g21960/T8O5_170). Identical to Peroxidase 42 precursor (EC 1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b) (PER42) [Arabidopsis Thaliana] (GB:Q9SB81;GB:Q41937;GB:Q42579;GB:Q43730); similar to peroxida
MSGI1_6274	TC15441	147	165.1	584	235.3	0	-1.3	-2	0	cell wall	PRXR1 (peroxidase 42); peroxidase Encodes AT4g21960 (AT4g21960/T8O5_170). Identical to Peroxidase 42 precursor (EC 1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b) (PER42) [Arabidopsis Thaliana] (GB:Q9SB81;GB:Q41937;GB:Q42579;GB:Q43730); similar to peroxida
MSGI1_5690	TC15446	2020.7	2316.3	1026.2	1808.5	0	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_1063	TC15447	118.2	77.5	54.9	118.9	0	1.1	1.1	0	protein.synthesis.elongation	"LOS1 (Low expression of osmotically responsive genes 1); translation elongation factor/ translation factor, nucleic acid binding encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene s"
MSGI1_46602	TC15449	0.7	0.7	18.1	57.8	0	1.7	-4.7	-6.4	not assigned.unknown	not assigned.unknown
MSGI1_11323	TC1545	126.1	34.4	47.9	27.4	-1.9	0	1.4	0	RNA.regulation of transcription.Nucleosome/chromatin assembly factor group	"HMGB2 (HIGH MOBILITY GROUP B 2); transcription factor Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain.  The motif confers non-sequence specific interaction"
MSGI1_101500	TC15453	3254.9	3927.9	1453	3005.8	0	1	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_39933	TC15456	40.3	73.9	14.3	18.4	0	0	1.5	2	not assigned.unknown	not assigned.unknown
MSGI1_36219	TC15467	1633.3	1777.3	722.5	1255.9	0	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_16072	TC15470	48.8	21.9	109	22.9	0	-2.3	-1.2	0	lipid metabolism.lipid transfer proteins etc	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_16072	TC15470	48.8	21.9	109	22.9	0	-2.3	-1.2	0	cell wall	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_16649	TC15471	21.1	7.6	36.9	6.9	0	-2.4	0	0	cell wall	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_16649	TC15471	21.1	7.6	36.9	6.9	0	-2.4	0	0	lipid metabolism.lipid transfer proteins etc	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_37548	TC15472	26.2	0.8	584.1	30	-5	-4.3	-4.5	-5.2	cell wall	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_37548	TC15472	26.2	0.8	584.1	30	-5	-4.3	-4.5	-5.2	lipid metabolism.lipid transfer proteins etc	LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 pre
MSGI1_442	TC15477	37.2	51.3	108	56.2	0	0	-1.5	0	transport.unspecified anions	BOR1 (REQUIRES HIGH BORON 1); anion exchanger Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitat
MSGI1_1877	TC15479	18.4	74.9	84.3	45.5	2	0	-2.2	0	secondary metabolism.isoprenoids.non-mevalonate pathway.DXR	"DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE) 1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) catalyzes the first committed step of the 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis. In Arabidopsis, DXR is encoded"
MSGI1_91924	TC15483	30.3	17.4	0	0	0	0	5.9	5.1	not assigned.unknown	not assigned.unknown
MSGI1_1477	TC15485	209.5	103.8	107.2	161.9	-1	0	1	0	protein.synthesis.elongation	"AtRABE1b/AtRab8D (Arabidopsis Rab GTPase homolog E1b); translation elongation factor  Identical to Elongation factor Tu, chloroplast precursor (EF-Tu) (TUFA) [Arabidopsis Thaliana] (GB:P17745); similar to elongation factor Tu, putative / EF-Tu, putative"
MSGI1_9479	TC15486	61.9	0.7	37	0.7	-6.5	-5.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_28012	TC155	75	112.9	0.4	0	0	0	7.6	7.8	not assigned.unknown	not assigned.unknown
MSGI1_2681	TC1550	15.6	41.7	16.4	37.1	1.4	0	0	0	stress.abiotic.light	UVR8 (UVB-RESISTANCE 8) UV-B-specific signaling component that orchestrates expression of a range of genes with vital UV-protective functions. Located in the nucleus and the cytosol. Associates with chromatin via histones. similar to Ran GTPase binding /
MSGI1_339	TC15500	32	60.5	98.9	71	0	0	-1.6	0	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS5 (Arabidopsis thaliana trehalose phosphatase/synthase 5); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that"
MSGI1_339	TC15500	32	60.5	98.9	71	0	0	-1.6	0	cell wall	"ATTPS5 (Arabidopsis thaliana trehalose phosphatase/synthase 5); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that"
MSGI1_13276	TC15502	86	77.4	2749.6	422.9	0	-2.7	-5	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_7576	TC15503	273.6	113.8	2356.6	283.7	-1.3	-3.1	-3.1	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_46601	TC15504	17.2	15.3	1146	87.2	0	-3.7	-6.1	-2.5	not assigned.unknown	not assigned.unknown
MSGI1_1095	TC15505	59.3	185.6	32.2	188.2	1.6	2.5	0	0	misc.cytochrome P450	"CYP89A5 (cytochrome P450, family 87, subfamily A, polypeptide 5); oxygen binding member of CYP89A similar to CYP89A6 (cytochrome P450, family 87, subfamily A, polypeptide 6), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G64940.1); similar to cytochrome"
MSGI1_603	TC15510	39.1	115	36.1	181.4	1.6	2.3	0	0	Co-factor and vitamine metabolism.thiamine	Encodes ThiC involved in thiamine biosynthesis.    Translation of ThiC is regulated by a riboswitch in the 3' of untranslated region of the messenger RNA.  similar to putative thiamin biosynthesis protein [Oryza sativa] (GB:AAK26130.1); similar to thiamin
MSGI1_885	TC15517	138.9	9.8	75.9	17.5	-3.8	-2.1	0	0	cell wall.cell wall proteins.proline rich proteins	PRP4 (PROLINE-RICH PROTEIN 4) Encodes one of four proline-rich proteins in Arabidopsis which are predicted to localize to the cell wall.  Transcripts are most abundant in aerial organs of the plant. similar to ATPRP2 (PROLINE-RICH PROTEIN 2) [Arabidopsis
MSGI1_6588	TC15529	55.6	115.4	61.4	79.4	1.1	0	0	0	redox.glutaredoxins	glutaredoxin family protein  similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT3G57070.1); similar to Thioredoxin fold [Medicago truncatula] (GB:ABE87618.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contain
MSGI1_17933	TC15530	16.4	41.7	14.8	22	1.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_20609	TC15531	28.3	60.5	31.1	47.9	1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_42680	TC15532	2.1	5.5	21.6	27.3	0	0	-3.4	-2.3	not assigned.unknown	not assigned.unknown
MSGI1_41717	TC15537	5.6	16.1	0	0	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_1388	TC15539	1042.4	561.2	171.4	209.2	0	0	2.6	1.4	cell wall	"TUA4 (tubulin alpha-4 chain) Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers. Identical to Tubulin alpha-6 chain (TUBA6) [Arabidopsis Thaliana] (GB:P29511); Identical to Tubulin alpha-2/alpha-4 chain (TUBA4) [Arabidopsis T"
MSGI1_1388	TC15539	1042.4	561.2	171.4	209.2	0	0	2.6	1.4	cell.organisation	"TUA4 (tubulin alpha-4 chain) Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers. Identical to Tubulin alpha-6 chain (TUBA6) [Arabidopsis Thaliana] (GB:P29511); Identical to Tubulin alpha-2/alpha-4 chain (TUBA4) [Arabidopsis T"
MSGI1_1932	TC15540	396.3	240.8	138.2	209.4	0	0	1.5	0	cell.organisation	TUA5 (tubulin alpha-5) Encodes an isoform of alpha tubulin. Closely related to adjacent gene TUA3 suggesting recent duplication. Identical to Tubulin alpha-3/alpha-5 chain (TUBA5) [Arabidopsis Thaliana] (GB:P20363); similar to TUA3 (tubulin alpha-3) [Ara
MSGI1_1932	TC15540	396.3	240.8	138.2	209.4	0	0	1.5	0	cell wall	TUA5 (tubulin alpha-5) Encodes an isoform of alpha tubulin. Closely related to adjacent gene TUA3 suggesting recent duplication. Identical to Tubulin alpha-3/alpha-5 chain (TUBA5) [Arabidopsis Thaliana] (GB:P20363); similar to TUA3 (tubulin alpha-3) [Ara
MSGI1_49174	TC15541	8.5	56.9	161.1	25.6	2.7	-2.7	-4.2	1.2	not assigned.unknown	not assigned.unknown
MSGI1_26231	TC15542	2.4	14.3	62.4	16.2	0	-1.9	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_5274	TC15543	23.7	126.3	141.4	84.9	2.4	0	-2.6	0	RNA.regulation of transcription.unclassified	"zinc-binding family protein  similar to zinc-binding family protein [Arabidopsis thaliana] (TAIR:AT1G32700.1); similar to Zinc finger, B-box [Medicago truncatula] (GB:ABE79196.1); contains InterPro domain Protein of unknown function DUF597; (InterPro:IPR"
MSGI1_8623	TC15544	38.1	68.2	99.7	63.9	0	0	-1.4	0	RNA.regulation of transcription.unclassified	"zinc-binding family protein  similar to zinc-binding family protein [Arabidopsis thaliana] (TAIR:AT1G32700.1); similar to Zinc finger, B-box [Medicago truncatula] (GB:ABE79196.1); contains InterPro domain Protein of unknown function DUF597; (InterPro:IPR"
MSGI1_17163	TC15546	22.8	26.8	37.4	12.5	0	-1.6	0	0	transport.calcium	"ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8); calcium-transporting ATPase/ calmodulin binding Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the"
MSGI1_67	TC15547	42.3	52.5	109.9	44.7	0	-1.3	-1.4	0	transport.calcium	"ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8); calcium-transporting ATPase/ calmodulin binding Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the"
MSGI1_5466	TC15548	85.4	102.9	21.5	14.3	0	0	2	2.8	not assigned.unknown	not assigned.unknown
MSGI1_11772	TC15551	12.3	11.2	57.7	35.1	0	0	-2.2	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_761	TC15554	58.5	89.6	122.7	51.4	0	-1.3	-1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_824	TC15561	8.8	24	38.8	26.1	0	0	-2.1	0	"misc.oxidases - copper, flavone etc."	"copper amine oxidase, putative  similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G43670.1); similar to peroxisomal copper-containing amine oxidase [Glycine max] (GB:AAD40979.1); similar to Copper amine oxidase [Medicago truncatul"
MSGI1_824	TC15561	8.8	24	38.8	26.1	0	0	-2.1	0	cell wall	"copper amine oxidase, putative  similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G43670.1); similar to peroxisomal copper-containing amine oxidase [Glycine max] (GB:AAD40979.1); similar to Copper amine oxidase [Medicago truncatul"
MSGI1_949	TC15563	21.9	141.1	46	73.6	2.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_14127	TC15564	68.4	111.6	58.7	47.5	0	0	0	1.2	not assigned.unknown	not assigned.unknown
MSGI1_5483	TC15565	20.5	31.1	6.1	8.7	0	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_17730	TC15566	11.6	31.5	46.3	43.5	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_80833	TC15568	11.1	14.1	2.2	0.9	0	0	0	4	not assigned.unknown	not assigned.unknown
MSGI1_21334	TC15569	9.1	13.5	0.2	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_9956	TC15576	43.5	28	17.2	24.2	0	0	1.3	0	nucleotide metabolism.salvage.nucleoside kinases.adenosine kinase	ADK1 (ADENOSINE KINASE 1) Involved in the salvage synthesis of                      adenylates and methyl recycling Identical to Adenosine kinase 1 (EC 2.7.1.20) (AK 1) (Adenosine 5'- phosphotransferase 1) (ADK1) [Arabidopsis Thaliana] (GB:Q9SF85); simil
MSGI1_54917	TC15578	22.2	14.1	54.8	51	0	0	-1.3	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_291	TC15590	126	55	195	55	-1.2	-1.8	0	0	protein.degradation.subtilases	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_291	TC15590	126	55	195	55	-1.2	-1.8	0	0	cell wall	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_13951	TC15591	199.1	90.9	70	137.8	-1.1	1	1.5	0	protein.synthesis.misc ribososomal protein	ATRPS5B (RIBOSOMAL PROTEIN 5B); structural constituent of ribosome One of two genes encoding the ribosomal protein S5. Expressed at a lower level compared to ATRPS5A. Identical to 40S ribosomal protein S5-1 (RPS5A) [Arabidopsis Thaliana] (GB:Q9ZUT9;GB:Q8
MSGI1_8892	TC15592	170.9	97.4	70.3	117	0	0	1.3	0	protein.synthesis.misc ribososomal protein	ATRPS5B (RIBOSOMAL PROTEIN 5B); structural constituent of ribosome One of two genes encoding the ribosomal protein S5. Expressed at a lower level compared to ATRPS5A. Identical to 40S ribosomal protein S5-1 (RPS5A) [Arabidopsis Thaliana] (GB:Q9ZUT9;GB:Q8
MSGI1_731	TC15593	172.2	67.8	59.4	60.1	-1.3	0	1.5	0	cell wall	"ERD3 (EARLY-RESPONSIVE TO DEHYDRATION 3)  similar to dehydration-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G31850.2); similar to dehydration-responsive protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD67956.1); similar to O"
MSGI1_731	TC15593	172.2	67.8	59.4	60.1	-1.3	0	1.5	0	stress.abiotic.drought/salt	"ERD3 (EARLY-RESPONSIVE TO DEHYDRATION 3)  similar to dehydration-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G31850.2); similar to dehydration-responsive protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD67956.1); similar to O"
MSGI1_1077	TC15595	173.6	25.4	76.9	17.4	-2.8	-2.1	1.2	0	cell wall.pectin*esterases.PME	pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT5G53370.1); similar to pectinesterase inhibitor [Lycoris aurea] (GB:ABJ99595.1); similar to Pectinesterase; Pectinesterase inhibitor [Medicago truncatu
MSGI1_1676	TC15596	17.9	39	48.2	59.3	0	0	-1.4	0	stress.biotic	"PAD4 (PHYTOALEXIN DEFICIENT 4); triacylglycerol lipase Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, anothe"
MSGI1_12247	TC15597	26	55.9	77.7	72.2	1.1	0	-1.6	0	stress.biotic	"PAD4 (PHYTOALEXIN DEFICIENT 4); triacylglycerol lipase Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, anothe"
MSGI1_25655	TC156	8.7	11.9	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_2618	TC15604	53.4	38.8	123.7	28.2	0	-2.1	-1.2	0	lipid metabolism.lipid degradation.lysophospholipases.phosphoinositide phospholipase C	"ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phosp"
MSGI1_2618	TC15604	53.4	38.8	123.7	28.2	0	-2.1	-1.2	0	signalling.phosphinositides.phosphoinositide phospholipase C	"ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phosp"
MSGI1_10283	TC15606	122.7	72.5	61.8	88.4	0	0	1	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L18A (RPL18aB)  Identical to 60S ribosomal protein L18a-2 (RPL18AB) [Arabidopsis Thaliana] (GB:P51418;GB:O64699); similar to 60S ribosomal protein L18A (RPL18aC) [Arabidopsis thaliana] (TAIR:AT3G14600.1); similar to unknown [Solanum
MSGI1_21954	TC15608	45.8	29.1	16.1	22.9	0	0	1.5	0	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L18A  (RPL18aA)  similar to RPL18AA (60S RIBOSOMAL PROTEIN L18A-1), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G29970.2); similar to Ribosomal L18ae protein [Medicago truncatula] (GB:ABE90867.1); contains Int"
MSGI1_45280	TC15616	189.1	76.8	16.3	21.2	-1.3	0	3.5	1.9	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_45280	TC15616	189.1	76.8	16.3	21.2	-1.3	0	3.5	1.9	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_32508	TC15617	81	32.3	11.6	10.1	-1.3	0	2.8	1.7	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_32508	TC15617	81	32.3	11.6	10.1	-1.3	0	2.8	1.7	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_31815	TC15618	78.1	25.9	23.7	30.1	-1.6	0	1.7	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_31815	TC15618	78.1	25.9	23.7	30.1	-1.6	0	1.7	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_45039	TC15619	175.9	60.8	52.8	53.1	-1.5	0	1.7	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_45039	TC15619	175.9	60.8	52.8	53.1	-1.5	0	1.7	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_3533	TC1562	28.5	35.2	59.2	27.2	0	-1.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_32966	TC15621	118.5	45.2	53.2	54.3	-1.4	0	1.2	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_32966	TC15621	118.5	45.2	53.2	54.3	-1.4	0	1.2	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_32724	TC15622	39.2	11.8	10.7	8.5	-1.7	0	1.9	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_32724	TC15622	39.2	11.8	10.7	8.5	-1.7	0	1.9	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_298	TC15623	47	71	18.7	37.5	0	0	1.3	0	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G28650.1); similar to CLAVATA1 receptor kinase (CLV1) [Arabidopsis thaliana] (TAIR:AT1G08590"
MSGI1_298	TC15623	47	71	18.7	37.5	0	0	1.3	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_298	TC15623	47	71	18.7	37.5	0	0	1.3	0	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G28650.1); similar to CLAVATA1 receptor kinase (CLV1) [Arabidopsis thaliana] (TAIR:AT1G08590"
MSGI1_3598	TC15629	344.5	91.8	146.1	44.3	-1.9	-1.7	1.2	1.1	cell wall	peroxidase 64 (PER64) (P64) (PRXR4)  Identical to Peroxidase 64 precursor (EC 1.11.1.7) (Atperox P64) (PRXR4) (ATP17a) (PER64) [Arabidopsis Thaliana] (GB:Q43872); similar to peroxidase [Arabidopsis thaliana] (TAIR:AT5G51890.1); similar to peroxidase [Str
MSGI1_3598	TC15629	344.5	91.8	146.1	44.3	-1.9	-1.7	1.2	1.1	misc.peroxidases	peroxidase 64 (PER64) (P64) (PRXR4)  Identical to Peroxidase 64 precursor (EC 1.11.1.7) (Atperox P64) (PRXR4) (ATP17a) (PER64) [Arabidopsis Thaliana] (GB:Q43872); similar to peroxidase [Arabidopsis thaliana] (TAIR:AT5G51890.1); similar to peroxidase [Str
MSGI1_60419	TC1563	3.6	4.6	36	12.3	0	-1.5	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_5397	TC15631	48.2	12.3	15.2	26.3	-2	0	1.7	0	cell wall.modification	"xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 6 precursor (EC 2.4.1.207) (At-XTH6) (XTH-6) (XTH6)"
MSGI1_20042	TC15632	25.1	3.3	3.8	8.3	-2.9	0	2.7	0	cell wall.modification	"xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 6 precursor (EC 2.4.1.207) (At-XTH6) (XTH-6) (XTH6)"
MSGI1_1256	TC15636	20	20.6	107.2	21.8	0	-2.3	-2.4	0	transport.peptides and oligopeptides	ATPTR2-B (NITRATE TRANSPORTER 1); transporter Encodes a peptide transport gene that mediates the transport of di- and tripeptides. Identical to Peptide transporter PTR2 (Histidine-transporting protein) (PTR2) [Arabidopsis Thaliana] (GB:P46032); similar t
MSGI1_1256	TC15636	20	20.6	107.2	21.8	0	-2.3	-2.4	0	transport.amino acids	ATPTR2-B (NITRATE TRANSPORTER 1); transporter Encodes a peptide transport gene that mediates the transport of di- and tripeptides. Identical to Peptide transporter PTR2 (Histidine-transporting protein) (PTR2) [Arabidopsis Thaliana] (GB:P46032); similar t
MSGI1_20812	TC15638	12.9	12.4	48.1	12.9	0	-1.9	-1.9	0	transport.amino acids	ATPTR2-B (NITRATE TRANSPORTER 1); transporter Encodes a peptide transport gene that mediates the transport of di- and tripeptides. Identical to Peptide transporter PTR2 (Histidine-transporting protein) (PTR2) [Arabidopsis Thaliana] (GB:P46032); similar t
MSGI1_20812	TC15638	12.9	12.4	48.1	12.9	0	-1.9	-1.9	0	transport.peptides and oligopeptides	ATPTR2-B (NITRATE TRANSPORTER 1); transporter Encodes a peptide transport gene that mediates the transport of di- and tripeptides. Identical to Peptide transporter PTR2 (Histidine-transporting protein) (PTR2) [Arabidopsis Thaliana] (GB:P46032); similar t
MSGI1_547	TC15642	21.3	47	64.1	46.6	0	0	-1.6	0	stress.abiotic.heat	HSP81-1 (HEAT SHOCK PROTEIN 81-1); ATP binding / unfolded protein binding Encodes a cytosolic heat shock protein AtHSP90.1.  AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance. Ide
MSGI1_1160	TC15644	44.9	101	50.9	105.1	1.2	1	0	0	signalling.MAP kinases	"WNK4 (Arabidopsis WNK kinase 4); kinase Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-acti"
MSGI1_1160	TC15644	44.9	101	50.9	105.1	1.2	1	0	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_1160	TC15644	44.9	101	50.9	105.1	1.2	1	0	0	cell wall	"WNK4 (Arabidopsis WNK kinase 4); kinase Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-acti"
MSGI1_24272	TC15657	84	67.4	43.4	91.2	0	1.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_11718	TC15658	85.5	69.8	43.7	81.6	0	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_2069	TC15660	45.2	83.9	63.7	124.9	0	1	0	0	lipid metabolism.lipid degradation.lipases	"lipase, putative  similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT4G18550.1); similar to lipase [Dianthus caryophyllus] (GB:AAD01804.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921)"
MSGI1_2259	TC15661	298.2	766.4	198.9	989.7	1.4	2.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_549	TC15673	39.9	50.8	26.4	21.1	0	0	0	1.3	protein.postranslational modification	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G73460.1); similar to Os05g0466900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055789.1); similar to Os01g0832900 [Oryza sativa (japonica culti
MSGI1_9913	TC15677	102.8	260.1	120.6	335.2	1.3	1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_847	TC15679	71.3	302.1	150.3	76.2	2.1	0	-1.1	2	RNA.regulation of transcription.C3H zinc finger family	CZF1/ZFAR1; transcription factor  similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G55980.1); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR0021
MSGI1_3239	TC15686	33	30	66.1	69.5	0	0	0	-1.2	protein.degradation.ubiquitin.E3.SCF.FBOX	F-box family protein  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G36090.1); similar to Os11g0155100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065788.1); similar to F-box protein-like [Oryza sativa (japonica cultivar-group)] (
MSGI1_86423	TC15687	1	2.2	21.8	45.9	0	0	-4.4	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_9763	TC15688	24.1	20	2.6	2.9	0	0	3.2	2.8	not assigned.unknown	not assigned.unknown
MSGI1_2737	TC15689	79	169	143.7	160.8	1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_709	TC15690	18.9	27.1	48.5	32	0	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_3742	TC15696	123.5	148.6	94.7	200.8	0	1.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_38179	TC15697	9.9	2.4	24.3	2	0	-3.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_5978	TC15698	39.6	74.3	31.6	20.8	0	0	0	1.8	cell wall	"phosphate-responsive protein, putative (EXO)  similar to PHI-1 (PHOSPHATE-INDUCED 1) [Arabidopsis thaliana] (TAIR:AT1G35140.1); similar to phi-1 [Nicotiana tabacum] (GB:BAA33810.1); contains InterPro domain Phosphate-induced protein 1 conserved region; ("
MSGI1_5978	TC15698	39.6	74.3	31.6	20.8	0	0	0	1.8	signalling.in sugar and nutrient physiology	"phosphate-responsive protein, putative (EXO)  similar to PHI-1 (PHOSPHATE-INDUCED 1) [Arabidopsis thaliana] (TAIR:AT1G35140.1); similar to phi-1 [Nicotiana tabacum] (GB:BAA33810.1); contains InterPro domain Phosphate-induced protein 1 conserved region; ("
MSGI1_6716	TC15699	34.1	62.4	27.3	24	0	0	0	1.4	cell wall	"phosphate-responsive protein, putative (EXO)  similar to PHI-1 (PHOSPHATE-INDUCED 1) [Arabidopsis thaliana] (TAIR:AT1G35140.1); similar to phi-1 [Nicotiana tabacum] (GB:BAA33810.1); contains InterPro domain Phosphate-induced protein 1 conserved region; ("
MSGI1_6716	TC15699	34.1	62.4	27.3	24	0	0	0	1.4	signalling.in sugar and nutrient physiology	"phosphate-responsive protein, putative (EXO)  similar to PHI-1 (PHOSPHATE-INDUCED 1) [Arabidopsis thaliana] (TAIR:AT1G35140.1); similar to phi-1 [Nicotiana tabacum] (GB:BAA33810.1); contains InterPro domain Phosphate-induced protein 1 conserved region; ("
MSGI1_50106	TC157	5.8	13.2	0	0.3	0	0	0	5.5	not assigned.unknown	not assigned.unknown
MSGI1_12487	TC15704	48.7	18.9	18	18.5	-1.4	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_35826	TC15708	27.6	30.7	20.5	8.4	0	0	0	1.9	not assigned.unknown	not assigned.unknown
MSGI1_18891	TC1571	5.1	20.5	7.9	39.3	0	2.3	0	0	secondary metabolism.flavonoids.dihydroflavonols	UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01390.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thali
MSGI1_118082	TC15713	2	1.2	30.1	31.5	0	0	-3.9	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_460	TC15714	18.1	18	49.4	32.2	0	0	-1.4	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BXL2 (BETA-XYLOSIDASE 2); hydrolase, hydrolyzing O-glycosyl compounds encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. similar t"
MSGI1_517	TC15715	144.6	23.1	60.6	18.6	-2.6	-1.7	1.3	0	"misc.gluco-, galacto- and mannosidases"	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL3 (beta-galactosidase 3), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G36360.2)"
MSGI1_517	TC15715	144.6	23.1	60.6	18.6	-2.6	-1.7	1.3	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL3 (beta-galactosidase 3), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G36360.2)"
MSGI1_2931	TC15716	114.7	38.4	84.5	102.1	-1.6	0	0	-1.4	RNA.regulation of transcription.unclassified	"mRNA-binding protein, putative  similar to catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT1G09340.1); similar to mRNA-binding protein precursor [Nicotiana tabacum] (GB:AAP87140.1); contains InterPro domain NAD-dependent epimerase/dehydratase;"
MSGI1_1808	TC15719	74	49.8	358.4	110.5	0	-1.7	-2.3	-1.1	cell wall	"SCPL48 (serine carboxypeptidase-like 48); serine carboxypeptidase  similar to SCPL47 (serine carboxypeptidase-like 47), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G22980.1); similar to SCPL49 (serine carboxypeptidase-like 49), serine carboxy"
MSGI1_1808	TC15719	74	49.8	358.4	110.5	0	-1.7	-2.3	-1.1	protein.degradation	"SCPL48 (serine carboxypeptidase-like 48); serine carboxypeptidase  similar to SCPL47 (serine carboxypeptidase-like 47), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G22980.1); similar to SCPL49 (serine carboxypeptidase-like 49), serine carboxy"
MSGI1_9508	TC15720	161.6	109.9	78.4	151.1	0	0.9	1	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S3 (RPS3C)  Identical to 40S ribosomal protein S3-3 (RPS3C) [Arabidopsis Thaliana] (GB:Q9FJA6); similar to 40S ribosomal protein S3 (RPS3A) [Arabidopsis thaliana] (TAIR:AT2G31610.1); similar to ribosomal protein S3 [Medicago truncat
MSGI1_7965	TC15721	158.9	97.1	71.3	114.2	0	0	1.2	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S3 (RPS3C)  Identical to 40S ribosomal protein S3-3 (RPS3C) [Arabidopsis Thaliana] (GB:Q9FJA6); similar to 40S ribosomal protein S3 (RPS3A) [Arabidopsis thaliana] (TAIR:AT2G31610.1); similar to ribosomal protein S3 [Medicago truncat
MSGI1_924	TC15724	33.9	186.2	240.9	74.7	2.5	-1.7	-2.8	1.3	protein.targeting.secretory pathway.vacuole	GAMMA-VPE (Vacuolar processing enzyme gamma); cysteine-type endopeptidase Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types
MSGI1_2001	TC15730	45.9	123	59.4	122.6	1.4	1	0	0	transporter.sugars.sucrose	"SUC2 (SUCROSE-PROTON SYMPORTER 2); carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter Encodes for a high-affinity  transporter essential for phloem loading and long-distance transport. A major sucrose transporter, AtSUC2 can also transpor"
MSGI1_1120	TC15731	101.8	179.5	49.6	121.8	0	1.3	1	0	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase	NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) chloroplast-targeted member of a family of  enzymes similar to nine-cis-epoxycarotenoid dioxygenase similar to NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5) [Arabidopsis thaliana] (TAIR:AT1G30100.1); similar
MSGI1_2371	TC15736	113	218.9	296.6	308.2	0	0	-1.4	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	RAP2.2; DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 A
MSGI1_471	TC15738	7.6	143.7	35.8	194.5	4.2	2.4	-2.2	0	protein.degradation.subtilases	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_471	TC15738	7.6	143.7	35.8	194.5	4.2	2.4	-2.2	0	cell wall	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_4045	TC15739	52	76.2	32	33.3	0	0	0	1.2	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	ATERF-2/ATERF2/ERF2 (ETHYLENE RESPONSE FACTOR 2); DNA binding / transcription factor/ transcriptional activator Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2). The protein contains on
MSGI1_4045	TC15739	52	76.2	32	33.3	0	0	0	1.2	hormone metabolism.ethylene.signal transduction	ATERF-2/ATERF2/ERF2 (ETHYLENE RESPONSE FACTOR 2); DNA binding / transcription factor/ transcriptional activator Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2). The protein contains on
MSGI1_5806	TC1574	58.3	40.3	24.4	42.1	0	0	1.3	0	protein.degradation.ubiquitin.proteasom	EIF2 (eukaryotic translation initiation factor 2); translation initiation factor translation initiation factor eIF2 p47 subunit homolog Identical to Eukaryotic translation initiation factor 3 subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f) (TIF3F1) [
MSGI1_164	TC15742	25.3	61	51.6	43.6	1.3	0	0	0	protein.degradation.ubiquitin.E2	"PHO2/UBC24 (PHOSPHATE 2); ubiquitin-protein ligase Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. similar to UBC23 (ubiquitin-conjugating enzyme"
MSGI1_6783	TC15743	330.8	132.6	94.2	109.6	-1.3	0	1.8	0	stress.abiotic.unspecified	"SAH7 Encodes a protein, expressed in leaves, with similarity to pollen allergens. similar to pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] (TAIR:AT1G78040.2); similar to pollen-specific protein [Vitis pseudoreticulata] (GB:AB"
MSGI1_928	TC15744	56.8	25.8	30.2	27.7	-1.1	0	0	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase, putative  similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to LOX1 (Lipoxygenase 1), lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G55020.1); similar to lipoxygenase, putati"
MSGI1_2814	TC15746	10.5	15.6	48.3	18.4	0	-1.4	-2.2	0	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G26580.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE89318.1); contains InterPro domain Zinc fi"
MSGI1_6945	TC15749	32.6	137.6	233.9	260.6	2.1	0	-2.8	0	RNA.regulation of transcription.C2H2 zinc finger family	"zinc knuckle (CCHC-type) family protein  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G33303.1); similar to Zinc knuckle containing protein [Brassica oleracea] (GB:ABD65024.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR0"
MSGI1_814	TC15752	79.9	32.6	21.2	32.1	-1.3	0	1.9	0	"cell wall.degradation.cellulases and beta -1,4-glucanases"	glycosyl hydrolase family 3 protein  similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G62710.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G20940.1); similar to glycosyl hydrolase family
MSGI1_814	TC15752	79.9	32.6	21.2	32.1	-1.3	0	1.9	0	cell wall	glycosyl hydrolase family 3 protein  similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G62710.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G20940.1); similar to glycosyl hydrolase family
MSGI1_466	TC15755	47.7	10	40.7	13.3	-2.3	-1.6	0	0	"misc.gluco-, galacto- and mannosidases"	"BGAL8 (beta-glactosidase 8); beta-galactosidase putative beta-galactosidase (BGAL8 gene) similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL9 (BETA GALACTOSIDASE 9), beta-galactosidase [A"
MSGI1_466	TC15755	47.7	10	40.7	13.3	-2.3	-1.6	0	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL8 (beta-glactosidase 8); beta-galactosidase putative beta-galactosidase (BGAL8 gene) similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL9 (BETA GALACTOSIDASE 9), beta-galactosidase [A"
MSGI1_32723	TC15756	19.8	3.8	21.7	5.1	-2.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_2355	TC15758	7	6.6	38.8	7.7	0	-2.3	-2.5	0	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.zeaxanthin epoxidase	ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase Encodes a single copy zeaxanthin epoxidase gene that functions in first step of the biosynthesis of the abiotic stress hormone abscisic acid (ABA). Mutants in this gene are unable to express female sterility i
MSGI1_16204	TC15764	51.2	88.4	102.7	45.8	0	-1.2	0	0	cell wall	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_16204	TC15764	51.2	88.4	102.7	45.8	0	-1.2	0	0	secondary metabolism.simple phenols	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_2990	TC15767	360.4	203	135	257.4	0	0	1.4	0	protein.synthesis.misc ribososomal protein	"40S ribosomal protein S2 (RPS2D)  Identical to 40S ribosomal protein S2-4 (RPS2D) [Arabidopsis Thaliana] (GB:Q9SCM3); similar to 40S ribosomal protein S2, putative [Arabidopsis thaliana] (TAIR:AT1G58684.1); similar to 40S ribosomal protein S2, putative ["
MSGI1_794	TC15768	56.6	43	22.5	47.6	0	0	1.3	0	RNA.processing	"PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed."
MSGI1_4752	TC15774	27.9	65	17	51.4	1.2	1.6	0	0	signalling.receptor kinases.leucine rich repeat XI	"BAM1 (big apical meristem 1); ATP binding / kinase/ protein serine/threonine kinase Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It ha"
MSGI1_4752	TC15774	27.9	65	17	51.4	1.2	1.6	0	0	cell wall	"BAM1 (big apical meristem 1); ATP binding / kinase/ protein serine/threonine kinase Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It ha"
MSGI1_4752	TC15774	27.9	65	17	51.4	1.2	1.6	0	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_1970	TC1578	24.4	38.1	56.1	13.4	0	-2.1	-1.2	1.5	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G28440.1); similar to leucine-rich repeat receptor-like protein kinase [Pyru"
MSGI1_1970	TC1578	24.4	38.1	56.1	13.4	0	-2.1	-1.2	1.5	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G28440.1); similar to leucine-rich repeat receptor-like protein kinase [Pyru"
MSGI1_4934	TC15785	82.5	43.6	39.2	42	0	0	1.1	0	hormone metabolism.brassinosteroid.synthesis-degradation.sterols.SMT	"SMT2 (STEROL METHYLTRANSFERASE 2) Encodes a sterol-C24-methyltransferases involved in sterol biosynthesis. Mutants display altered sterol composition, serrated petals and sepals and altered cotyledon vascular patterning as well as ectopic endoreduplicati"
MSGI1_426	TC15797	26.1	45.3	69.8	54.7	0	0	-1.4	0	stress.biotic	"ADR1-L1 (ADR1-LIKE 1); ATP binding / protein binding  Identical to Probable disease resistance protein At4g33300 [Arabidopsis Thaliana] (GB:Q9SZA7;GB:Q56WJ3); similar to ADR1-L2 (ADR1-LIKE 2), ATP binding / nucleoside-triphosphatase/ nucleotide binding /"
MSGI1_426	TC15797	26.1	45.3	69.8	54.7	0	0	-1.4	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_25227	TC158	39	48.4	9	7.4	0	0	2.1	2.7	not assigned.unknown	not assigned.unknown
MSGI1_17616	TC15812	99.1	536	38.8	23.1	2.4	0	1.4	4.5	not assigned.unknown	not assigned.unknown
MSGI1_10991	TC15813	18.4	131.4	348.8	318	2.8	0	-4.2	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_36218	TC15814	113.1	479.5	205.6	144.2	2.1	0	0	1.7	not assigned.unknown	not assigned.unknown
MSGI1_773	TC15818	22.6	69.6	89.6	74.4	1.6	0	-2	0	"misc.oxidases - copper, flavone etc."	"copper amine oxidase, putative  similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G43670.1); similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT1G62810.1); similar to amine oxidase [Canavalia lineata] (GB:AAD"
MSGI1_773	TC15818	22.6	69.6	89.6	74.4	1.6	0	-2	0	cell wall	"copper amine oxidase, putative  similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G43670.1); similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT1G62810.1); similar to amine oxidase [Canavalia lineata] (GB:AAD"
MSGI1_4128	TC15820	29.4	27	81.6	27.7	0	-1.6	-1.5	0	lipid metabolism.Phospholipid synthesis.choline kinase	"choline kinase, putative encodes a choline kinase, whose expression is induced by high salt and mannitol. similar to choline kinase, putative [Arabidopsis thaliana] (TAIR:AT4G09760.1); similar to ATCK1 (CHOLINE KINASE) [Arabidopsis thaliana] (TAIR:AT1G71"
MSGI1_11118	TC15827	92.1	48.1	39.6	78.8	0	1	1.2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L15 (RPL15A)  Identical to 60S ribosomal protein L15-2 (RPL15B) [Arabidopsis Thaliana] (GB:Q8VYF1;GB:O23582); Identical to 60S ribosomal protein L15-1 (RPL15A) [Arabidopsis Thaliana] (GB:O23515); similar to 60S ribosomal protein L15
MSGI1_9201	TC15828	250.7	144.8	56.7	123.7	0	1.1	2.1	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L15 (RPL15A)  Identical to 60S ribosomal protein L15-2 (RPL15B) [Arabidopsis Thaliana] (GB:Q8VYF1;GB:O23582); Identical to 60S ribosomal protein L15-1 (RPL15A) [Arabidopsis Thaliana] (GB:O23515); similar to 60S ribosomal protein L15
MSGI1_8622	TC15832	31.4	41.4	70.4	42	0	0	-1.2	0	secondary metabolism.isoprenoids.carotenoids.carotenoid cleavage dioxygenase	"CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1) Encodes a protein with 9-<i>cis</i>-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including &#946;-carotene, lutein, zeaxanthin, and all-<i>trans</i>-violaxanthin.  W"
MSGI1_10738	TC15842	72.7	48	109.9	23.6	0	-2.2	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	ATAUX2-11 (indoleacetic acid-induced protein 4); transcription factor Auxin inducible protein similar to transcription factors. Identical to Auxin-responsive protein IAA4 (Indoleacetic acid-induced protein 4) (Auxin-induced protein AUX2-11) (IAA4) [Arabi
MSGI1_10738	TC15842	72.7	48	109.9	23.6	0	-2.2	0	0	RNA.regulation of transcription.Aux/IAA family	ATAUX2-11 (indoleacetic acid-induced protein 4); transcription factor Auxin inducible protein similar to transcription factors. Identical to Auxin-responsive protein IAA4 (Indoleacetic acid-induced protein 4) (Auxin-induced protein AUX2-11) (IAA4) [Arabi
MSGI1_8196	TC15843	78.5	58.5	159.9	11.2	0	-3.8	0	2.4	RNA.regulation of transcription.Aux/IAA family	ATAUX2-11 (indoleacetic acid-induced protein 4); transcription factor Auxin inducible protein similar to transcription factors. Identical to Auxin-responsive protein IAA4 (Indoleacetic acid-induced protein 4) (Auxin-induced protein AUX2-11) (IAA4) [Arabi
MSGI1_8196	TC15843	78.5	58.5	159.9	11.2	0	-3.8	0	2.4	hormone metabolism.auxin.induced-regulated-responsive-activated	ATAUX2-11 (indoleacetic acid-induced protein 4); transcription factor Auxin inducible protein similar to transcription factors. Identical to Auxin-responsive protein IAA4 (Indoleacetic acid-induced protein 4) (Auxin-induced protein AUX2-11) (IAA4) [Arabi
MSGI1_10136	TC15844	69.2	42.8	118.6	47.5	0	-1.3	0	0	RNA.regulation of transcription.Aux/IAA family	ATAUX2-11 (indoleacetic acid-induced protein 4); transcription factor Auxin inducible protein similar to transcription factors. Identical to Auxin-responsive protein IAA4 (Indoleacetic acid-induced protein 4) (Auxin-induced protein AUX2-11) (IAA4) [Arabi
MSGI1_10136	TC15844	69.2	42.8	118.6	47.5	0	-1.3	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	ATAUX2-11 (indoleacetic acid-induced protein 4); transcription factor Auxin inducible protein similar to transcription factors. Identical to Auxin-responsive protein IAA4 (Indoleacetic acid-induced protein 4) (Auxin-induced protein AUX2-11) (IAA4) [Arabi
MSGI1_860	TC15845	24.3	81.7	92.6	129.5	1.7	0	-1.9	0	transport.peptides and oligopeptides	proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT5G19640.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arab
MSGI1_58593	TC15847	19.1	29.6	6.6	2.6	0	0	0	3.5	not assigned.unknown	not assigned.unknown
MSGI1_733	TC15850	62.8	20.4	369.2	19.8	-1.6	-4.2	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_997	TC15859	36.9	20.9	60.9	56.3	0	0	0	-1.4	cell wall	"LAC2 (laccase 2); copper ion binding / oxidoreductase putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1)"
MSGI1_997	TC15859	36.9	20.9	60.9	56.3	0	0	0	-1.4	secondary metabolism.simple phenols	"LAC2 (laccase 2); copper ion binding / oxidoreductase putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1)"
MSGI1_3182	TC15866	45.4	38.5	17.7	43	0	1.3	1.4	0	misc.cytochrome P450	"CYP72A14 (cytochrome P450, family 72, subfamily A, polypeptide 14); oxygen binding putative cytochrome P450 similar to CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14690.1); similar t"
MSGI1_2648	TC15867	62.6	51.4	18.2	29.6	0	0	1.8	0	TCA / org. transformation.other organic acid transformaitons.IDH	"isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative  Identical to Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial precursor (EC 1.1.1.41) (Isocitric dehydrogenase 5) (NAD(+)-specific ICDH 5) (IDH-V) (IDH5) [Arab"
MSGI1_462	TC15870	38.5	84.6	68.5	47.1	1.1	0	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	PAL2 (phenylalanine ammonia-lyase 2); phenylalanine ammonia-lyase Encodes phenylalanine lyase. Identical to Phenylalanine ammonia-lyase 2 (EC 4.3.1.5) (PAL2) [Arabidopsis Thaliana] (GB:P45724;GB:Q53ZM9;GB:Q8RWP4;GB:Q94KC9;GB:Q9SCN5); similar to PAL3 (PHE
MSGI1_319	TC15874	15.9	65.6	14.7	34.6	2	0	0	0	cell wall.cellulose synthesis.cellulose synthase	"IRX3 (IRREGULAR XYLEM 3, MURUS 10); cellulose synthase encodes a xylem-specific cellulose synthase Identical to Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) (CESA7) [Arabidopsis Thal"
MSGI1_6375	TC15882	69.8	49.3	34.5	38.5	0	0	1	0	cell. vesicle transport	clathrin adaptor complexes medium subunit-related  similar to delta-COP [Zea mays] (GB:AAF67098.1); similar to Os05g0310800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055159.1); similar to Os05g0311000 [Oryza sativa (japonica cultivar-group)] (GB
MSGI1_12904	TC15883	47.9	34.1	15.8	15.3	0	0	1.6	0	cell. vesicle transport	clathrin adaptor complexes medium subunit-related  similar to delta-COP [Zea mays] (GB:AAF67098.1); similar to Os05g0310800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055159.1); similar to Os05g0311000 [Oryza sativa (japonica cultivar-group)] (GB
MSGI1_1420	TC15887	29.7	45.1	68.3	56.8	0	0	-1.2	0	amino acid metabolism.degradation.branched-chain group.valine	"ALDH6B2 (Aldehyde dehydrogenase 6B2); 3-chloroallyl aldehyde dehydrogenase Arabidopsis thaliana methylmalonate-semialdehyde dehydrogenase Identical to Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial precursor (EC 1.2.1.27) (MMSDH) (M"
MSGI1_3344	TC15893	79.5	33.6	22.2	56.3	-1.2	1.3	1.8	0	transport.unspecified cations	bile acid:sodium symporter family protein  similar to bile acid:sodium symporter family protein [Arabidopsis thaliana] (TAIR:AT1G78560.1); similar to putative anion:sodium symporter [Lycopersicon esculentum] (GB:AAU03362.1); contains InterPro domain Bile
MSGI1_3799	TC15897	50.5	61.4	39.7	82.8	0	1.1	0	0	amino acid metabolism.degradation.serine-glycine-cysteine group.cysteine	"ST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1); thiosulfate sulfurtransferase encodes a sulfurtransferase/rhodaneses, which belongs to a group of enzymes widely distributed in all three phyla that catalyze the transfer of sulfur from a donor to a thiophilic"
MSGI1_6258	TC15898	467.3	266.9	129.5	327.5	0	1.3	1.9	0	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L8 (RPL8C)  Identical to 60S ribosomal protein L8-3 (RPL8C) [Arabidopsis Thaliana] (GB:Q42064;GB:Q7DLL7); similar to EMB2296 (EMBRYO DEFECTIVE 2296), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G18020.1); simi"
MSGI1_54383	TC159	24	29.5	0.8	0.5	0	0	4.9	5.9	not assigned.unknown	not assigned.unknown
MSGI1_41	TC15924	35.4	55.7	85	68.9	0	0	-1.3	0	development.unspecified	"GI (GIGANTEA) Together with CONSTANTS (CO) and FLOWERING LOCUS T (FT), GIGANTEA promotes flowering under long days in a circadian clock-controlled flowering pathway. GI acts earlier than CO and FT in the pathway by increasing CO and FT mRNA abundance. Lo"
MSGI1_8736	TC15926	450	48	222.4	53.9	-3.2	-2	1	0	cell wall.modification	"EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4); hydrolase, acting on glycosyl bonds EXGT-A4, endoxyloglucan transferase, Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 5 precursor (EC 2.4.1.207) (At-XTH5) (XTH-5) (XTH5) [Arabidopsis Tha"
MSGI1_11401	TC15927	420	7.3	84.3	6	-5.8	-3.8	2.3	0	cell wall.modification	"EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4); hydrolase, acting on glycosyl bonds EXGT-A4, endoxyloglucan transferase, Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 5 precursor (EC 2.4.1.207) (At-XTH5) (XTH-5) (XTH5) [Arabidopsis Tha"
MSGI1_2680	TC15932	29.5	62.3	54.9	69.2	1.1	0	0	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G03040.1); similar to unknown [Solanum tuberosum] (GB:ABB16991.1); contains InterPro domain Hel
MSGI1_5919	TC15935	44.1	69.2	25.1	23.7	0	0	0	1.5	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_5919	TC15935	44.1	69.2	25.1	23.7	0	0	0	1.5	signalling.MAP kinases	"ATMKK9 (Arabidopsis thaliana MAP kinase kinase 9); kinase member of MAP Kinase Kinase similar to ATMKK7 (MAP KINASE KINASE7), kinase [Arabidopsis thaliana] (TAIR:AT1G18350.1); similar to double MYC-tagged mitogen activated protein kinase kinase 9 [synthe"
MSGI1_5919	TC15935	44.1	69.2	25.1	23.7	0	0	0	1.5	cell wall	"ATMKK9 (Arabidopsis thaliana MAP kinase kinase 9); kinase member of MAP Kinase Kinase similar to ATMKK7 (MAP KINASE KINASE7), kinase [Arabidopsis thaliana] (TAIR:AT1G18350.1); similar to double MYC-tagged mitogen activated protein kinase kinase 9 [synthe"
MSGI1_99725	TC1594	0	0	39.8	17.8	0	0	-6.3	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_344	TC15943	16.5	57.9	31.2	33.7	1.8	0	0	0	stress.abiotic.heat	"ATHSP101 (HEAT SHOCK PROTEIN 101); ATP binding / ATPase Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHs"
MSGI1_3192	TC15944	94.7	207.3	133.1	62.6	1.1	-1.1	0	1.7	protein.targeting.secretory pathway.vacuole	"(AT)SRC2/SRC2 (SOYBEAN GENE REGULATED BY COLD-2); protein binding SRC2 specifically binds the peptide PIEPPPHH, and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting. similar to C2 domain-contai"
MSGI1_2905	TC15946	88.5	39.5	50.1	58.4	-1.2	0	0	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"RPS1 (ribosomal protein S1); RNA binding  similar to S1 RNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G71720.1); similar to 30S ribosomal protein S1, chloroplast precursor (CS1) (GB:P29344); contains InterPro domain Nucleic acid-b"
MSGI1_6110	TC15948	255.3	12	36.2	11.9	-4.4	-1.6	2.8	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22142.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71274.1); contains InterPro domain Plant lipid t
MSGI1_22380	TC15949	203.9	10.1	24.7	9.8	-4.3	0	3	0	not assigned.unknown	not assigned.unknown
MSGI1_2760	TC1595	106.7	77.6	229.5	140.9	0	0	-1.1	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"ribosomal protein L1 family protein  Identical to 50S ribosomal protein L1, chloroplast precursor (CL1) (RPL1) [Arabidopsis Thaliana] (GB:Q9LY66;GB:Q9LWB4); similar to ribosomal protein L1 family protein [Arabidopsis thaliana] (TAIR:AT2G42710.1); similar"
MSGI1_40435	TC15950	59.1	3.1	11.4	3.3	-4.3	0	2.4	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22142.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71274.1); contains InterPro domain Plant lipid t
MSGI1_1836	TC15953	71.3	31.8	53.6	37.4	-1.2	0	0	0	cell wall.cellulose synthesis.COBRA	COB (COBRA) Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis.  Cob mutants have abnormal roots that expand rad
MSGI1_1466	TC15958	87.4	32.4	29.1	44.4	-1.4	0	1.6	0	cell wall.pectin*esterases.PME	ATPME3 (Arabidopsis thaliana pectin methylesterase 3) encodes a pectin methylesterase similar to ATPME2 (Arabidopsis thaliana pectin methylesterase 2) [Arabidopsis thaliana] (TAIR:AT1G53830.1); similar to pectin methyl esterase [Solanum tuberosum] (GB:AA
MSGI1_1943	TC15959	44.1	30.9	16.9	32.1	0	0	1.4	0	protein.folding	"chaperonin, putative  similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G18190.1); similar to hypothetical protein DDBDRAFT_0217758 [Dictyostelium discoideum AX4] (GB:XP_643258.1); similar to Os03g0804800 [Oryza sativa (japonica cultivar-gr"
MSGI1_1979	TC1596	61.5	39.7	102.7	29.9	0	-1.8	0	0	cell wall	"CIPK3 (CBL-INTERACTING PROTEIN KINASE 3); kinase/ protein kinase encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing see"
MSGI1_1979	TC1596	61.5	39.7	102.7	29.9	0	-1.8	0	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_1979	TC1596	61.5	39.7	102.7	29.9	0	-1.8	0	0	protein.postranslational modification	"CIPK3 (CBL-INTERACTING PROTEIN KINASE 3); kinase/ protein kinase encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing see"
MSGI1_1541	TC15962	35.5	43.3	86.7	32.1	0	-1.4	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_2443	TC15963	29.4	40.1	86.6	40.3	0	-1.1	-1.6	0	hormone metabolism.abscisic acid.signal transduction	ABI2 (ABA INSENSITIVE 2); protein phosphatase type 2C Encodes a protein phosphatase 2C and is involved in ABA signal transduction. Binds fibrillin preprotein in vitro and in vivo. Identical to Protein phosphatase 2C ABI2 (EC 3.1.3.16) (PP2C) (Abscisic ac
MSGI1_5617	TC15964	75.7	37.3	31	47.7	-1	0	1.3	0	transport.porins	"porin, putative  Identical to Outer mitochondrial membrane protein porin 1 (Voltage-dependent anion- selective channel protein 1) (VDAC 1) [Arabidopsis Thaliana] (GB:Q9SRH5); similar to porin, putative / voltage-dependent anion-selective channel protein,"
MSGI1_10060	TC1597	84.7	126.2	53.3	127.5	0	1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_1353	TC15985	113.5	89.1	57	104.3	0	0	1	0	S-assimilation.APR	"APR1 (PAPS REDUCTASE HOMOLOG 19) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group"
MSGI1_3180	TC15991	164.4	55.4	64.3	45.2	-1.6	0	1.4	0	cell wall.degradation.pectate lyases and polygalacturonases	pectate lyase family protein  Identical to Probable pectate lyase 22 precursor (EC 4.2.2.2) [Arabidopsis Thaliana] (GB:Q93Z25;GB:Q9FMK5); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G24780.1); similar to pectate lyase family p
MSGI1_6880	TC160	12.4	16.3	0.1	0	0	0	7	5	stress.biotic	"disease resistance protein (NBS-LRR class), putative  Identical to Putative disease resistance protein At4g27190 [Arabidopsis Thaliana] (GB:Q9T048); similar to disease resistance protein (NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G27220.1)"
MSGI1_4102	TC16000	20	31.5	92.2	39.3	0	-1.2	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_5793	TC16001	61.6	45.1	28.7	44.6	0	0	1.1	0	cell wall.cell wall proteins.RGP	"reversibly glycosylated polypeptide, putative  similar to RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1) [Arabidopsis thaliana] (TAIR:AT3G02230.1); similar to Alpha-1,4-glucan-protein synthase (UDP-forming) [Medicago truncatula] (GB:ABD28560.1); contains I"
MSGI1_3764	TC16004	104.6	61.9	28.6	52.3	0	0	1.9	0	DNA.synthesis/chromatin structure.histone	"histone H1.2  Identical to Histone H1.2 [Arabidopsis Thaliana] (GB:P26569); similar to histone H1, putative [Arabidopsis thaliana] (TAIR:AT1G06760.1); similar to histone H1 [Apium graveolens] (GB:CAA73171.1); contains InterPro domain Linker histone, N-te"
MSGI1_6494	TC16012	15.5	40	37.4	44.4	1.4	0	0	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"tropinone reductase, putative / tropine dehydrogenase, putative  similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29290.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japo"
MSGI1_9439	TC16013	31.9	9.9	22.4	12.8	-1.7	0	0	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"tropinone reductase, putative / tropine dehydrogenase, putative  similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29290.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japo"
MSGI1_81985	TC16014	2.4	12.9	22.6	12.1	0	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_4247	TC16016	27.2	59	50.8	53.8	1.1	0	0	0	cell.organisation	"ATMAP65-6; microtubule binding Binds microtubules. Induces a crisscross mesh of microtubules, not bundles.  Not involved in microtubule polymerization nor nucleation. Localizes to mitochondria. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G"
MSGI1_6866	TC16022	54.1	14.7	20.7	24.2	-1.9	0	1.4	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"RPL4 (ribosomal protein L4); structural constituent of ribosome encodes a plastid ribosomal protein L4 Identical to 50S ribosomal protein L4, chloroplast precursor (CL4) (R-protein L4) (RPL4) [Arabidopsis Thaliana] (GB:O50061;GB:Q8LF27;GB:Q8VZS1;GB:Q9LNV"
MSGI1_72157	TC16023	24.7	6.2	0.4	0.2	-2	0	5.9	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"RPL4 (ribosomal protein L4); structural constituent of ribosome encodes a plastid ribosomal protein L4 Identical to 50S ribosomal protein L4, chloroplast precursor (CL4) (R-protein L4) (RPL4) [Arabidopsis Thaliana] (GB:O50061;GB:Q8LF27;GB:Q8VZS1;GB:Q9LNV"
MSGI1_10340	TC16027	16	28.8	7	7.7	0	0	0	1.9	not assigned.unknown	not assigned.unknown
MSGI1_7478	TC1603	23.5	23.4	44.5	51.9	0	0	0	-1.1	nucleotide metabolism.phosphotransfer and pyrophosphatases.misc	"inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative  similar to inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative [Arabidopsis thaliana] (TA"
MSGI1_5854	TC16032	42	49.4	104.6	30.6	0	-1.8	-1.3	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	HAT22 (homeobox-leucine zipper protein 22); transcription factor Encodes homeobox protein HAT22. Identical to Homeobox-leucine zipper protein HAT22 (Homeodomain-leucine zipper protein HAT22) (HD-ZIP protein 22) (HAT22) [Arabidopsis Thaliana] (GB:P46604;G
MSGI1_5854	TC16032	42	49.4	104.6	30.6	0	-1.8	-1.3	0	development.unspecified	HAT22 (homeobox-leucine zipper protein 22); transcription factor Encodes homeobox protein HAT22. Identical to Homeobox-leucine zipper protein HAT22 (Homeodomain-leucine zipper protein HAT22) (HD-ZIP protein 22) (HAT22) [Arabidopsis Thaliana] (GB:P46604;G
MSGI1_4561	TC16040	81.7	49.7	57.2	18.9	0	-1.6	0	1.4	cell wall	"peroxidase, putative  Identical to Peroxidase 67 precursor (EC 1.11.1.7) (Atperox P67) (ATP44) (PER67) [Arabidopsis Thaliana] (GB:Q9LVL2); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to peroxidase precursor [Quercus"
MSGI1_4561	TC16040	81.7	49.7	57.2	18.9	0	-1.6	0	1.4	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 67 precursor (EC 1.11.1.7) (Atperox P67) (ATP44) (PER67) [Arabidopsis Thaliana] (GB:Q9LVL2); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to peroxidase precursor [Quercus"
MSGI1_13606	TC16045	28.6	40.7	2.6	2.8	0	0	3.5	3.9	minor CHO metabolism.sugar alcohols	"sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative  similar to oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT5G63620.1); similar to sorbitol related enzyme [Solanum lycopersicum] (GB:BAE47038."
MSGI1_4287	TC16049	39.1	20.9	13.2	9.9	0	0	1.6	0	cell wall	"SKU5 (skewed 5); copper ion binding encodes a protein of unknown function involved in directed root tip growth. It is a member of 19-member gene family and is distantly related structurally to the multiple-copper oxidases ascorbate oxidase and laccase, t"
MSGI1_2585	TC16050	69.5	33.6	30.2	48.8	-1	0	1.2	0	tetrapyrrole synthesis.porphobilinogen deaminase	"HEMC (HYDROXYMETHYLBILANE SYNTHASE); hydroxymethylbilane synthase Encodes a protein with porphobilinogen deaminase activity. This protein is targeted to the chloroplast. Identical to Porphobilinogen deaminase, chloroplast precursor (EC 2.5.1.61) (PBG) (H"
MSGI1_4327	TC16062	87.1	82.4	31.8	131.2	0	2	1.5	0	"misc.gluco-, galacto- and mannosidases"	glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G18070.1); similar to beta-mannosidase enzyme [Lycopersicon esculentum] (GB:AAL37714.1); similar to beta-mannosidase 3 [Oncidium Gower Ram
MSGI1_4327	TC16062	87.1	82.4	31.8	131.2	0	2	1.5	0	cell wall	glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G18070.1); similar to beta-mannosidase enzyme [Lycopersicon esculentum] (GB:AAL37714.1); similar to beta-mannosidase 3 [Oncidium Gower Ram
MSGI1_505	TC16065	58.9	65.6	20.5	33.7	0	0	1.5	0	signalling.receptor kinases.leucine rich repeat III	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G68400.1); similar to putative receptor kinase [Malus x domestica] (GB:ABA82081.1); similar"
MSGI1_505	TC16065	58.9	65.6	20.5	33.7	0	0	1.5	0	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G68400.1); similar to putative receptor kinase [Malus x domestica] (GB:ABA82081.1); similar"
MSGI1_1532	TC16069	29.2	61.2	59	43.1	1.1	0	0	0	DNA.unspecified	"TBP1 (TELOMERIC DNA BINDING PROTEIN 1); DNA binding Encodes a protein that specifically binds plant telomeric DNA  repeats. similar to TRFL9 (TRF-LIKE 9), DNA binding [Arabidopsis thaliana] (TAIR:AT3G12560.1); similar to MYB-like DNA-binding protein [Cat"
MSGI1_1532	TC16069	29.2	61.2	59	43.1	1.1	0	0	0	RNA.regulation of transcription.unclassified	"TBP1 (TELOMERIC DNA BINDING PROTEIN 1); DNA binding Encodes a protein that specifically binds plant telomeric DNA  repeats. similar to TRFL9 (TRF-LIKE 9), DNA binding [Arabidopsis thaliana] (TAIR:AT3G12560.1); similar to MYB-like DNA-binding protein [Cat"
MSGI1_8937	TC1607	47.5	44.1	5.2	5.7	0	0	3.2	3	not assigned.unknown	not assigned.unknown
MSGI1_5027	TC16073	96	70.5	24.7	38.9	0	0	2	0	protein.degradation.ubiquitin.proteasom	PAG1 (20S proteasome alpha subunit G1); peptidase Encodes 20S proteasome subunit PAG1 (PAG1). Identical to Proteasome subunit alpha type 3 (EC 3.4.25.1) (Proteasome subunit alpha type 7) (20S proteasome alpha subunit G-1) (Proteasome component 8) (DiDi 1
MSGI1_5768	TC16074	48.6	33.3	45.8	69.7	0	0	0	-1.1	protein.degradation.ubiquitin.proteasom	PAG1 (20S proteasome alpha subunit G1); peptidase Encodes 20S proteasome subunit PAG1 (PAG1). Identical to Proteasome subunit alpha type 3 (EC 3.4.25.1) (Proteasome subunit alpha type 7) (20S proteasome alpha subunit G-1) (Proteasome component 8) (DiDi 1
MSGI1_36217	TC16076	13.8	18.8	40.6	21.9	0	0	-1.6	0	protein.postranslational modification	"ATSR1 (SERINE/THREONINE PROTEIN KINASE 1); kinase Encodes a CBL-interacting serine/threonine protein kinase. similar to CIPK11 (SNF1-RELATED PROTEIN KINASE 3.22, SOS3-INTERACTING PROTEIN 4), kinase [Arabidopsis thaliana] (TAIR:AT2G30360.1); similar to CB"
MSGI1_3975	TC16077	121.8	63.6	38.5	76.9	0	1	1.7	0	protein.synthesis.misc ribososomal protein	P40 (40S ribosomal protein SA); structural constituent of ribosome acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue. Identical to 40S rib
MSGI1_118081	TC1608	14.1	13.9	0.4	1.6	0	0	5.1	3.1	not assigned.unknown	not assigned.unknown
MSGI1_28655	TC16095	0	0	44.5	42.8	0	0	-6.5	-6.4	not assigned.unknown	not assigned.unknown
MSGI1_8772	TC16098	19.1	19.2	45.8	57.6	0	0	0	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_19605	TC161	16.2	25.4	0.4	0.1	0	0	5.3	8	not assigned.unknown	not assigned.unknown
MSGI1_669	TC16110	40.1	59.2	88.7	51.1	0	0	-1.1	0	transport.unspecified cations	NHX2 (sodium proton exchanger 2); sodium:hydrogen antiporter member of Sodium proton exchanger family Identical to Sodium/hydrogen exchanger 2 (Na(+)/H(+) exchanger 2) (NHE-2) (NHX2) [Arabidopsis Thaliana] (GB:Q56XP4;GB:Q9CAW6); similar to NHX4 (sodium p
MSGI1_9106	TC16114	244.2	204	122.6	209.9	0	0	1	0	DNA.synthesis/chromatin structure	"NAP1;3 (NUCLEOSOME ASSEMBLY PROTEIN1;3); DNA binding  similar to NAP1,1 (NUCLEOSOME ASSEMBLY PROTEIN1,1), DNA binding [Arabidopsis thaliana] (TAIR:AT4G26110.1); similar to nucleosome assembly protein I-like protein; similar to mouse nap I, PIR Accession"
MSGI1_4881	TC16116	62.6	30.9	35.7	53.5	-1	0	0	0	"misc.oxidases - copper, flavone etc."	"oxidoreductase, zinc-binding dehydrogenase family protein  Identical to Quinone oxidoreductase-like protein At1g23740, chloroplast precursor (EC 1.-.-.-) [Arabidopsis Thaliana] (GB:Q9ZUC1;GB:Q945P3); similar to oxidoreductase, zinc-binding dehydrogenase"
MSGI1_10851	TC16117	39.1	8.7	53.6	43.4	-2.2	0	0	-2.3	misc.invertase/pectin methylesterase inhibitor family protein	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT3G47380.1); similar to putative ripening-related protein [Vitis vinife
MSGI1_10851	TC16117	39.1	8.7	53.6	43.4	-2.2	0	0	-2.3	cell wall	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT3G47380.1); similar to putative ripening-related protein [Vitis vinife
MSGI1_3055	TC16118	50.2	24.1	18.2	23.3	0	0	1.5	0	cell wall.cell wall proteins.RGP	"RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3); alpha-1,4-glucan-protein synthase (UDP-forming) Encodes a reversible autoglycosylated protein peripherally associated with cell membranes.  Highly expressed in roots ans suspension-cultured cells. similar to"
MSGI1_1724	TC16119	63.3	45.9	31.6	47.6	0	0	1	0	protein.targeting.nucleus	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein  similar to nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G25150.1); sim
MSGI1_2663	TC16121	79.6	88.2	189.1	85.7	0	-1.1	-1.2	0	misc.misc2	"epoxide hydrolase, putative  similar to epoxide hydrolase, putative [Arabidopsis thaliana] (TAIR:AT3G05600.1); similar to soluble epoxide hydrolase [Citrus jambhiri] (GB:BAD13534.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000"
MSGI1_14776	TC16123	13.9	31.4	134.6	87.4	0	0	-3.3	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_26780	TC16124	0.1	0.2	14	38.4	0	1.5	-7.1	-7.6	not assigned.unknown	not assigned.unknown
MSGI1_3989	TC16126	20.9	16.5	63.8	27.3	0	-1.2	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_1046	TC16131	64.4	13.8	62	47.7	-2.2	0	0	-1.8	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX2 (LIPOXYGENASE 2) Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection. Identical to Lipoxygenase, chloroplast precur"
MSGI1_17570	TC16133	246.5	219.1	100.5	168.7	0	0	1.3	0	stress.abiotic.heat	"HSP81-2 (EARLY-RESPONSIVE TO DEHYDRATION 8); ATP binding a member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl."
MSGI1_810	TC16135	112.3	85.9	57.9	80.4	0	0	1	0	RNA.processing	"PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed."
MSGI1_8068	TC16136	124.9	76.9	40.3	62	0	0	1.6	0	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L18 (RPL18C)  Identical to 60S ribosomal protein L18-3 (RPL18C) [Arabidopsis Thaliana] (GB:Q940B0); similar to RPL18 (RIBOSOMAL PROTEIN L18), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G05590.1); similar to c"
MSGI1_8552	TC1614	14.1	27.5	16.8	48.2	0	1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_1170	TC16143	62.8	55.8	31.3	46.4	0	0	1	0	amino acid metabolism.synthesis.aspartate family.lysine.diaminopimelate decarboxylase	"diaminopimelate decarboxylase, putative / DAP carboxylase, putative  similar to diaminopimelate decarboxylase, putative / DAP carboxylase, putative [Arabidopsis thaliana] (TAIR:AT5G11880.1); similar to Os02g0440000 [Oryza sativa (japonica cultivar-group)"
MSGI1_13504	TC16145	211.9	131.5	337.4	274.3	0	0	0	-1.1	PS.lightreaction.photosystem II.PSII polypeptide subunits	"photosystem II reaction center W (PsbW) protein-related Encodes a protein similar to photosystem II reaction center subunit W. Identical to Photosystem II reaction center W protein, chloroplast precursor (PSII 6.1 kDa protein) (PSBW) [Arabidopsis Thalian"
MSGI1_39534	TC16150	3.6	3.2	45.7	11.6	0	-2	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_50320	TC16153	0	0	46.4	23.9	0	0	-6.5	-5.6	not assigned.unknown	not assigned.unknown
MSGI1_25824	TC16154	6	11	32.1	16.6	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_42679	TC16158	11	17.6	0.9	0.9	0	0	0	4.3	not assigned.unknown	not assigned.unknown
MSGI1_3318	TC16162	29.7	19.2	69.5	22	0	-1.7	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_302	TC16165	7.6	16.9	32.2	14.8	0	0	-2.1	0	cell wall	"ATTPS9 (Arabidopsis thaliana trehalose-phosphatase/synthase 9); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that"
MSGI1_302	TC16165	7.6	16.9	32.2	14.8	0	0	-2.1	0	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS9 (Arabidopsis thaliana trehalose-phosphatase/synthase 9); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that"
MSGI1_10170	TC16168	6	34.3	11.6	23.1	2.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_6747	TC16169	6.2	33.7	16.2	25.3	2.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_3106	TC16174	13.1	26.4	6	32.7	0	2.4	0	0	hormone metabolism.gibberelin.synthesis-degradation.ent-kaurenoic acid hydroxylase/oxygenase	KAO2 (ENT-KAURENOIC ACID HYDROXYLASE 2); oxygen binding ent-kaurenoic acid hydroxylase (KAO2) Identical to Ent-kaurenoic acid oxidase 2 (EC 1.14.13.79) (AtKAO2) (Cytochrome P450 88A4) (KAO2) [Arabidopsis Thaliana] (GB:Q9C5Y2;GB:Q9ZV72); similar to CYP88A
MSGI1_5095	TC16179	16.2	45.2	64.5	60.7	1.5	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_7985	TC16180	75.6	61.9	33.1	58.5	0	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_46600	TC16181	47.8	43.9	15.1	18.6	0	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_1986	TC1619	62.9	41.8	32	26	0	0	1	0	TCA / org. transformation.TCA.pyruvate DH.E1	"IAR4 (IAA-conjugate-resistant 4); pyruvate dehydrogenase (acetyl-transferring) Arabidopsis thaliana pyruvate dehydrogenase E1a-like subunit. 81% identical to a previously characterized Arabidopsis mitochondrial PDH E1a-subunit, At1g59900 Identical to Pyr"
MSGI1_79693	TC162	13.7	31.1	0	0	0	0	4.8	6	not assigned.unknown	not assigned.unknown
MSGI1_1472	TC16202	24.7	62.4	51.6	47.9	1.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_4643	TC16207	123.2	85.5	49.8	79.3	0	0	1.3	0	protein.degradation.ubiquitin.proteasom	PAD2 (20S proteasome alpha subunit D2); peptidase Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation. Identical to Proteasome subunit alpha type 7-B (EC 3.4.25.1) (Proteasome subunit alpha type 4) (20S proteasome alpha subun
MSGI1_362	TC1621	23	19	15.7	56.8	0	1.9	0	-1.6	secondary metabolism.isoprenoids.terpenoids	"beta-amyrin synthase, putative  similar to LUP1 (LUPEOL SYNTHASE 1), lupeol synthase [Arabidopsis thaliana] (TAIR:AT1G78970.1); similar to ATLUP2 (Arabidopsis thaliana lupeol synthase 2), lupeol synthase [Arabidopsis thaliana] (TAIR:AT1G78960.1); similar"
MSGI1_7189	TC16213	10.9	49	23.1	28.9	2.2	0	0	0	transport.misc	permease  Identical to Nucleobase-ascorbate transporter 11 (AtNAT11) (NAT11) [Arabidopsis Thaliana] (GB:Q6SZ87;GB:Q8GWX5;GB:Q8LC52;GB:Q9SZK5); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:AT2G27810.1); similar to putativ
MSGI1_2846	TC16220	59.6	41.5	28.5	39	0	0	1.1	0	protein.aa activation.serine-tRNA ligase	"seryl-tRNA synthetase / serine--tRNA ligase  Identical to Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) [Arabidopsis Thaliana] (GB:Q39230); similar to AtSRS (OVULE ABORTION 7), serine-tRNA ligase [Arabidopsis thaliana] (TAIR:AT1G11870"
MSGI1_237	TC16223	29.6	83.1	125.6	58	1.5	-1.1	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_10457	TC16227	31.1	68.6	67	54.2	1.1	0	-1.1	0	hormone metabolism.auxin.induced-regulated-responsive-activated	auxin-responsive family protein  similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT3G61900.1); similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G00880.1); similar to Auxin responsive SAUR protein [Medicago
MSGI1_13503	TC16231	7.1	16.4	32.1	5.6	0	-2.5	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_7873	TC16235	58.8	124.3	139.3	113	1.1	0	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_14049	TC16237	9.8	14.4	5.5	1.8	0	0	0	3	RNA.regulation of transcription.WRKY domain transcription factor family	TTR1 (WRKY domain family protein 16); transcription factor Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. Identical to Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16)
MSGI1_14049	TC16237	9.8	14.4	5.5	1.8	0	0	0	3	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G27180.1); similar to TIR-NBS disease resistance-like protein [Populus trichocarpa] (GB:ABB82029"
MSGI1_20086	TC1624	5.7	6.9	22.3	3.6	0	-2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_4727	TC16240	24.6	27.9	14.7	4.8	0	0	0	2.5	stress.biotic	"ATP binding / protein binding / transmembrane receptor  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G09430.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thalia"
MSGI1_4727	TC16240	24.6	27.9	14.7	4.8	0	0	0	2.5	RNA.regulation of transcription.WRKY domain transcription factor family	TTR1 (WRKY domain family protein 16); transcription factor Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. Identical to Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16)
MSGI1_32506	TC16241	40	48.2	3.7	2.5	0	0	3.4	4.3	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G19510.2); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thal"
MSGI1_48923	TC16244	25	39.2	45.8	8.2	0	-2.5	0	2.3	DNA.repair	heavy-metal-associated domain-containing protein  similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G23760.1); similar to Unknown (protein for MGC:78286) [Mus musculus] (GB:AAH71252.1); contains InterPro domain He
MSGI1_44803	TC16245	66.8	141.6	141.9	33.5	1.1	-2.1	-1.1	2.1	DNA.repair	heavy-metal-associated domain-containing protein  similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G23760.1); similar to Unknown (protein for MGC:78286) [Mus musculus] (GB:AAH71252.1); contains InterPro domain He
MSGI1_3577	TC16246	20.1	69	34.9	73	1.8	1.1	0	0	protein.postranslational modification	"CIPK12 (CIPK12); kinase Encodes CBL-interacting protein kinase 12 (CIPK12). similar to CIPK19 (CIPK19), kinase [Arabidopsis thaliana] (TAIR:AT5G45810.1); similar to CIPK13 (CIPK13), kinase [Arabidopsis thaliana] (TAIR:AT2G34180.1); similar to CIPK18 (CIP"
MSGI1_3577	TC16246	20.1	69	34.9	73	1.8	1.1	0	0	cell wall	"CIPK12 (CIPK12); kinase Encodes CBL-interacting protein kinase 12 (CIPK12). similar to CIPK19 (CIPK19), kinase [Arabidopsis thaliana] (TAIR:AT5G45810.1); similar to CIPK13 (CIPK13), kinase [Arabidopsis thaliana] (TAIR:AT2G34180.1); similar to CIPK18 (CIP"
MSGI1_3577	TC16246	20.1	69	34.9	73	1.8	1.1	0	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_12150	TC16251	131.9	32.4	37.3	32.6	-2	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_27304	TC16252	188.1	43.4	80	62.9	-2.1	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_2154	TC16258	15.8	11.8	57	12.7	0	-2.2	-1.9	0	cell wall	"glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G54570.1); similar to Os03g0212800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049358.1); similar to beta-glucosidase, putative [Me"
MSGI1_2154	TC16258	15.8	11.8	57	12.7	0	-2.2	-1.9	0	"misc.gluco-, galacto- and mannosidases"	"glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G54570.1); similar to Os03g0212800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049358.1); similar to beta-glucosidase, putative [Me"
MSGI1_4171	TC16265	20.4	14.9	45.1	50.1	0	0	0	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_59186	TC16268	31.5	16.2	10.2	9.4	0	0	1.6	0	cell wall	RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1); kinase Encodes a receptor-like kinase that does not contain an extracellular leucine-rich repeat domain.  A novel type of dominant disease-resistance protein that confers resistance to a broad spectrum of Fusari
MSGI1_59186	TC16268	31.5	16.2	10.2	9.4	0	0	1.6	0	signalling.receptor kinases.wall associated kinase	RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1); kinase Encodes a receptor-like kinase that does not contain an extracellular leucine-rich repeat domain.  A novel type of dominant disease-resistance protein that confers resistance to a broad spectrum of Fusari
MSGI1_87744	TC1627	108.3	9	17.4	8.6	-3.6	0	2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_9225	TC1628	94	7.8	20	6.8	-3.6	0	2.2	0	development.unspecified	"PDF1 (PROTODERMAL FACTOR 1) Encodes a putative extracellular proline-rich protein is exclusively expressed in the L1 layer of vegetative, inflorescence and floral meristems and the protoderm of organ primordia. similar to leucine-rich repeat family prote"
MSGI1_3198	TC16287	13.2	38.2	20.9	29.9	1.5	0	0	0	signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related  similar to MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinas
MSGI1_38928	TC163	24.8	32.7	1.2	1.5	0	0	4.4	4.4	not assigned.unknown	not assigned.unknown
MSGI1_2833	TC16300	18.8	54.6	85.7	45.3	1.5	0	-2.2	0	minor CHO metabolism.others	aldose 1-epimerase family protein  similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT3G01590.1); similar to Galactose mutarotase-like [Medicago truncatula] (GB:ABE86317.1); contains InterPro domain Galactose mutarotase-like; (Int
MSGI1_559	TC16302	74.8	44.5	245.1	45.5	0	-2.4	-1.7	0	stress.abiotic.drought/salt	ERD4 (EARLY-RESPONSIVE TO DEHYDRATION 4)  similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT1G32090.1); similar to Os07g0150100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058898.1); sim
MSGI1_3309	TC16304	51.6	76.7	107.3	80	0	0	-1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_868	TC1631	13.2	43.6	12.4	24.6	1.7	0	0	0	protein.postranslational modification	"protein kinase family protein  similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G04810.2); similar to Protein kinase [Medicago truncatula] (GB:ABE80294.1); similar to NIMA-related protein kinase [Populus tremula x Populus alba] (GB:AAL"
MSGI1_868	TC1631	13.2	43.6	12.4	24.6	1.7	0	0	0	cell wall	"protein kinase family protein  similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G04810.2); similar to Protein kinase [Medicago truncatula] (GB:ABE80294.1); similar to NIMA-related protein kinase [Populus tremula x Populus alba] (GB:AAL"
MSGI1_12127	TC16317	47.8	136.4	92.4	108	1.5	0	0	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_12127	TC16317	47.8	136.4	92.4	108	1.5	0	0	0	protein.postranslational modification	"CIPK7 (CBL-INTERACTING PROTEIN KINASE 7); kinase Encodes a serine/threonine protein kinase with similarities to CBL-interacting protein kinases, SNF1 and SOS2. similar to CIPK4 (CBL-INTERACTING PROTEIN KINASE 4), kinase [Arabidopsis thaliana] (TAIR:AT4G1"
MSGI1_12127	TC16317	47.8	136.4	92.4	108	1.5	0	0	0	cell wall	"CIPK7 (CBL-INTERACTING PROTEIN KINASE 7); kinase Encodes a serine/threonine protein kinase with similarities to CBL-interacting protein kinases, SNF1 and SOS2. similar to CIPK4 (CBL-INTERACTING PROTEIN KINASE 4), kinase [Arabidopsis thaliana] (TAIR:AT4G1"
MSGI1_10431	TC1632	26.4	57.6	78.6	93.7	1.1	0	-1.6	0	cell wall	UNE11 (unfertilized embryo sac 11); pectinesterase inhibitor  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G62770.1); similar to putative 21kD protein precursor [Medicago sativa subsp. x varia] (GB:CA
MSGI1_10431	TC1632	26.4	57.6	78.6	93.7	1.1	0	-1.6	0	misc.invertase/pectin methylesterase inhibitor family protein	UNE11 (unfertilized embryo sac 11); pectinesterase inhibitor  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G62770.1); similar to putative 21kD protein precursor [Medicago sativa subsp. x varia] (GB:CA
MSGI1_2213	TC16328	12.3	29.8	59.1	41	0	0	-2.3	0	protein.degradation	"peptidase S41 family protein  similar to C-terminal processing protease, putative [Arabidopsis thaliana] (TAIR:AT4G17740.2); similar to carboxyl-terminal processing protease [Nostoc sp. PCC 7120] (GB:NP_487460.1); similar to Os06g0318600 [Oryza sativa (j"
MSGI1_5501	TC16330	25.6	35.9	71.7	28.1	0	-1.4	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_3082	TC16342	146.8	93	55	70.2	0	0	1.4	0	TCA / org. transformation.other organic acid transformaitons.atp-citrate lyase	ACLB-1 (ATP-citrate lyase B-1) One of the two genes encoding subunit B of the trimeric enzyme ATP Citrate lyase similar to ACLB-2 (ATP-citrate lyase B-2) [Arabidopsis thaliana] (TAIR:AT5G49460.1); similar to ATP citrate lyase a-subunit [Lupinus albus] (G
MSGI1_4861	TC16343	85.6	44.6	384.6	40.2	0	-3.3	-2.2	0	redox.ascorbate and glutathione.glutathione	"ATGPX6 (GLUTATHIONE PEROXIDASE 6); glutathione peroxidase Encodes glutathione peroxidase. Identical to Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial precursor (EC 1.11.1.12) (PHGPx) (AtGPX1) (GPX6) [Arabidopsis Thaliana] (GB"
MSGI1_5180	TC16345	29.8	75.2	46.9	85.7	1.3	0	0	0	cell wall.pectin*esterases.acetyl esterase	"pectinacetylesterase, putative  similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT5G45280.2); similar to OSJNBa0041A02.14 [Oryza sativa (japonica cultivar-group)] (GB:CAD41867.2); similar to pectinacetylesterase precursor [Vigna ra"
MSGI1_2086	TC16350	22.8	82.5	53.8	53	1.9	0	-1.2	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY21 (WRKY DNA-binding protein 21); transcription factor Encodes WRKY DNA-binding protein 21 (WRKY21). Identical to Probable WRKY transcription factor 21 (WRKY DNA-binding protein 21) (WRKY21) [Arabidopsis Thaliana] (GB:O04336); similar to WRKY74 (WRKY
MSGI1_2398	TC16352	11.9	13	150	9.8	0	-3.9	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_389	TC16359	29.3	56.3	76.7	41.7	0	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_13950	TC16360	33.1	53.1	74.6	52.3	0	0	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_2082	TC16363	37.8	25.5	0.1	0	0	0	8.6	5.7	protein.degradation.serine protease	"serine-type peptidase/ trypsin  Identical to Putative protease Do-like 14 (EC 3.4.21.-) (DEGP14) [Arabidopsis Thaliana] (GB:Q3E6S8); similar to DEGP1 (DEGP PROTEASE 1), serine-type peptidase [Arabidopsis thaliana] (TAIR:AT3G27925.1); similar to PREDICTED"
MSGI1_4654	TC16365	9.9	53.7	53.4	75.5	2.4	0	-2.4	0	cell wall	MYB111 (myb domain protein 111); DNA binding / transcription factor Encodes a putative transcription factor (MYB48). Identical to Transcription factor MYB48 (Myb-related protein 48) (AtMYB48) (MYB48) [Arabidopsis Thaliana] (GB:Q9LX82;GB:Q4JL82;GB:Q67YJ3)
MSGI1_4654	TC16365	9.9	53.7	53.4	75.5	2.4	0	-2.4	0	RNA.regulation of transcription.MYB domain transcription factor family	MYB111 (myb domain protein 111); DNA binding / transcription factor Encodes a putative transcription factor (MYB48). Identical to Transcription factor MYB48 (Myb-related protein 48) (AtMYB48) (MYB48) [Arabidopsis Thaliana] (GB:Q9LX82;GB:Q4JL82;GB:Q67YJ3)
MSGI1_5482	TC16366	267.3	249.9	66.5	72.7	0	0	2	1.8	not assigned.unknown	not assigned.unknown
MSGI1_12547	TC16367	62.2	30.7	0	0.1	-1	0	7	8.3	not assigned.unknown	not assigned.unknown
MSGI1_861	TC16370	27.3	139.4	50.8	95.6	2.4	0	0	0	protein.degradation.ubiquitin.E2	"PHO2/UBC24 (PHOSPHATE 2); ubiquitin-protein ligase Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. similar to UBC23 (ubiquitin-conjugating enzyme"
MSGI1_1084	TC16372	53.2	17	26.7	19.2	-1.6	0	0	0	"misc.oxidases - copper, flavone etc."	"ATPAO2 (POLYAMINE OXIDASE 2); amine oxidase  similar to ATPAO3 (POLYAMINE OXIDASE 3), oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G59050.1); similar to amine oxidase family protein [Musa acuminata] (GB:ABF69974.1); similar to H0215F08.3 [Oryza sativa"
MSGI1_1893	TC16381	33	60.8	170	63.1	0	-1.4	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_9200	TC16385	146.9	117.4	62.4	63.1	0	0	1.2	0	cell wall.cell wall proteins.AGPs	FLA11 (fasciclin-like arabinogalactan-protein 11)  Identical to Fasciclin-like arabinogalactan protein 11 precursor (FLA11) [Arabidopsis Thaliana] (GB:Q8LEJ6;GB:Q9LYW8); similar to FLA12 (fasciclin-like arabinogalactan-protein 12) [Arabidopsis thaliana] (
MSGI1_5710	TC16387	193.3	114	94.4	94.9	0	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_5361	TC1639	37.7	21.8	16.3	44.8	0	1.5	0	0	RNA.regulation of transcription.unclassified	"RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding encodes a chloroplast RNA-binding protein Identical to 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) (RBP31) [A"
MSGI1_5361	TC1639	37.7	21.8	16.3	44.8	0	1.5	0	0	RNA.RNA binding	"RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding encodes a chloroplast RNA-binding protein Identical to 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) (RBP31) [A"
MSGI1_1890	TC16390	40.5	42	190.3	57.3	0	-1.7	-2.2	0	protein.degradation.aspartate protease	aspartyl protease family protein  similar to pepsin A [Arabidopsis thaliana] (TAIR:AT1G62290.2); similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT4G04460.1); similar to aspartic protease (GB:AAB03108.1); similar to Aspartic prot
MSGI1_12986	TC16392	175.8	80.7	76.4	78.4	-1.1	0	1.2	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S25 (RPS25B)  Identical to 40S ribosomal protein S25-2 (RPS25B) [Arabidopsis Thaliana] (GB:Q9SIK2); similar to 40S ribosomal protein S25 (RPS25E) [Arabidopsis thaliana] (TAIR:AT4G39200.1); similar to S25 ribosomal protein [Medicago t
MSGI1_83213	TC16393	0	0	65.9	45.1	0	0	-7	-6.5	not assigned.unknown	not assigned.unknown
MSGI1_724	TC16395	7.3	16.3	30.9	10.2	0	0	-2.1	0	stress.abiotic.heat	APG6/CLPB-P/CLPB3 (ALBINO AND PALE GREEN 6); ATP binding / ATPase Encodes a chloroplast-targeted Hsp101 homologue.  Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring ther
MSGI1_3617	TC16398	8.9	12	48.5	16.6	0	-1.5	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_3081	TC16400	103.4	83.6	46.7	64.6	0	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_8133	TC16402	18.9	62.3	181.2	34.3	1.7	-2.4	-3.3	0	misc.glutathione S transferases	ATGSTU25 (Arabidopsis thaliana Glutathione S-transferase (class tau) 25); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU24 (Arabidopsis th
MSGI1_9199	TC1641	24.4	12.6	55.1	22.5	0	-1.3	-1.2	0	stress.abiotic.heat	heat shock family protein  similar to heat shock family protein [Arabidopsis thaliana] (TAIR:AT5G20970.1); similar to Heat shock protein Hsp20 [Medicago truncatula] (GB:ABE78853.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); cont
MSGI1_47604	TC16410	14.9	10.3	0	0	0	0	4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_2832	TC16414	18.1	20.6	27.9	47	0	0	0	-1.2	amino acid metabolism.degradation.branched-chain group.leucine	"hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative  similar to MAM1 (2-isopropylmalate synthase 3), 2-isopropylmalate synthase [Arabidopsis thaliana] (TAIR:AT5G23010.1); similar to putati"
MSGI1_14087	TC16415	54.8	74.1	73	35.7	0	0	0	1.1	protein.degradation.ubiquitin.E3.SCF.FBOX	"F-box family protein-related  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48020.1); similar to IS10 transposase, putative [Lycopersicon esculentum] (GB:ABI34274.1); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); c"
MSGI1_7937	TC16418	47	87.2	52.1	27	0	0	0	1.7	cell wall	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G21130.1); similar to Harpin-induced 1 [Medicago truncatula] (GB:ABE82616.1); contains InterPro domain Harpin-ind
MSGI1_3280	TC1642	29.8	143.6	139.9	201.9	2.3	0	-2.2	0	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN1 (DARK INDUCIBLE 6) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumul"
MSGI1_1499	TC16427	443.6	208.9	260.7	409.8	-1.1	0	0	0	PS.calvin cyle.GAP	"GAPA-2; glyceraldehyde-3-phosphate dehydrogenase  similar to GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT), glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G26650.1); similar to glyceraldehyde-3-phosphate dehydrogenas"
MSGI1_4911	TC16429	22.3	43.2	154.7	41.2	0	-1.9	-2.8	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	ATHB-1 (Homeobox-leucine zipper protein HAT5); transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf development. Identical to Homeobox-leucine zipper protein HAT5 (Homeodomain-leucine zip
MSGI1_1991	TC16431	29.8	70.6	77.2	53.7	1.2	0	-1.4	0	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to IKU2 (HAIKU2), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G19700.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TA"
MSGI1_1991	TC16431	29.8	70.6	77.2	53.7	1.2	0	-1.4	0	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to IKU2 (HAIKU2), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G19700.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TA"
MSGI1_1991	TC16431	29.8	70.6	77.2	53.7	1.2	0	-1.4	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_8067	TC16432	37.6	33.3	119	50.3	0	-1.2	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_834	TC16438	79.2	52.3	33.5	22.9	0	0	1.2	1.2	signalling.receptor kinases.leucine rich repeat III	"RKL1 (Receptor-like kinase 1); ATP binding / kinase/ protein serine/threonine kinase Arabidopsis thaliana receptor-like protein kinase (RKL1) gene similar to RLK902 (receptor-like kinase 902), ATP binding / kinase/ protein serine/threonine kinase [Arabid"
MSGI1_834	TC16438	79.2	52.3	33.5	22.9	0	0	1.2	1.2	cell wall	"RKL1 (Receptor-like kinase 1); ATP binding / kinase/ protein serine/threonine kinase Arabidopsis thaliana receptor-like protein kinase (RKL1) gene similar to RLK902 (receptor-like kinase 902), ATP binding / kinase/ protein serine/threonine kinase [Arabid"
MSGI1_3047	TC16439	99.7	213.8	171.1	213.6	1.1	0	0	0	protein.degradation.cysteine protease	"cysteine proteinase, putative  Identical to Thiol protease aleurain-like precursor (EC 3.4.22.16) [Arabidopsis Thaliana] (GB:Q8RWQ9;GB:Q9M3E7); similar to AALP (ARABIDOPSIS ALEURAIN-LIKE PROTEASE), cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT5"
MSGI1_1074	TC16442	35.3	38.5	101.5	62.8	0	0	-1.5	0	cell wall	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_1074	TC16442	35.3	38.5	101.5	62.8	0	0	-1.5	0	protein.degradation.subtilases	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_7696	TC16447	11.5	18.7	60.6	23.1	0	-1.4	-2.4	0	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G22920.1); similar to Zinc finger, RING-type; Zinc finger, CHY-type [Medicago truncatula] (GB:ABE83637.1);"
MSGI1_11358	TC1645	53.2	17.9	22.3	27.2	-1.6	0	1.3	0	RNA.regulation of transcription.unclassified	"RNA recognition motif (RRM)-containing protein  similar to CP33 (PIGMENT DEFECTIVE 322), RNA binding [Arabidopsis thaliana] (TAIR:AT3G52380.1); similar to Plastid-specific 30S ribosomal protein 2, chloroplast precursor (PSRP-2) (GB:P82277); contains Inte"
MSGI1_1245	TC16451	279.1	103.7	83.1	248.7	-1.4	1.6	1.7	-1.3	misc.UDP glucosyl and glucoronyl transferases	"UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22340.1); similar to transcription factor/ transferase, transferring glycosyl groups [Arabidops"
MSGI1_1245	TC16451	279.1	103.7	83.1	248.7	-1.4	1.6	1.7	-1.3	cell wall	"UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22340.1); similar to transcription factor/ transferase, transferring glycosyl groups [Arabidops"
MSGI1_1814	TC16453	0.9	92.6	42.9	63.6	6.7	0	-5.6	0	nucleotide metabolism.degradation	"AHL (HAL2-LIKE); 3'(2'),5'-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase Encodes a 3'-phosphoadenosine-5'-phosphate (PAP) phosphatase that is sensitive to physiological concentrations of Na+.  It does not also act as inositol po"
MSGI1_4355	TC16456	62.1	25	38.7	31.2	-1.3	0	0	0	cell wall	"peroxidase 73 (PER73) (P73) (PRXR11)  Identical to Peroxidase 73 precursor (EC 1.11.1.7) (Atperox P73) (PRXR11) (ATP10a) (PER73) [Arabidopsis Thaliana] (GB:Q43873); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT3G49960.1); similar to per"
MSGI1_4355	TC16456	62.1	25	38.7	31.2	-1.3	0	0	0	misc.peroxidases	"peroxidase 73 (PER73) (P73) (PRXR11)  Identical to Peroxidase 73 precursor (EC 1.11.1.7) (Atperox P73) (PRXR11) (ATP10a) (PER73) [Arabidopsis Thaliana] (GB:Q43873); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT3G49960.1); similar to per"
MSGI1_32391	TC16457	44.9	23.7	7.5	8	0	0	2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_22767	TC16458	26.9	16.1	6.7	5.1	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_6914	TC16459	5	29.5	4.8	28.7	2.6	2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_27450	TC16460	4.9	23	2.3	13.6	2.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_17162	TC1648	47.4	55.1	240.1	57.2	0	-2.1	-2.3	0	fermentation.aldehyde dehydrogenase	ALDH7B4 (ALDEHYDE DEHYDROGENASE 7B4); 3-chloroallyl aldehyde dehydrogenase Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 7B4 (EC 1.2.1.3) (Antiquitin-1) (Turgor- responsive ALDH) (ALDH7B4) [Arabidopsis Thaliana] (GB:Q9SYG7;GB:Q546B7); simila
MSGI1_117378	TC16482	33.1	1.2	21.3	4.7	-4.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_25505	TC16483	191.5	128.7	190.8	76.3	0	-1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_53322	TC16484	271.4	108.3	110.1	63.5	-1.3	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_3818	TC16486	22.5	25.3	62.8	36.5	0	0	-1.5	0	"RNA.regulation of transcription.CCAAT box binding factor family, HAP2"	"CCAAT-binding transcription factor (CBF-B/NF-YA) family protein  Identical to Nuclear transcription factor Y subunit A-8 (AtNF-YA-8) (NFYA8) [Arabidopsis Thaliana] (GB:Q9LNP6); similar to HAP2C (Heme activator protein (yeast) homolog 2C), transcription f"
MSGI1_2643	TC16494	20.3	51.1	58.6	50.5	1.3	0	-1.5	0	RNA.regulation of transcription.MYB-related transcription factor family	DNA-binding family protein  similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G47390.1); similar to MYB transcription factor MYB138 [Glycine max] (GB:ABH02859.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287)
MSGI1_5889	TC165	6.4	16.3	0.1	0.7	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_859	TC16506	443.9	98.6	79.2	75.8	-2.2	0	2.5	0	cell wall	"SKS5 (SKU5 Similar 5); copper ion binding / oxidoreductase  similar to SKS6 (SKU5 Similar 6), pectinesterase [Arabidopsis thaliana] (TAIR:AT1G41830.1); similar to SKS8 (SKU5 Similar 8), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1"
MSGI1_1845	TC16510	21.8	19.5	442.4	40.2	0	-3.5	-4.3	0	not assigned.unknown	not assigned.unknown
MSGI1_39366	TC16513	0	0	52	81.8	0	0	-6.7	-7.4	not assigned.unknown	not assigned.unknown
MSGI1_114533	TC16514	0	0	45.6	49	0	0	-6.5	-6.6	not assigned.unknown	not assigned.unknown
MSGI1_57042	TC16515	0	0	33.4	72	0	1.1	-6.1	-7.2	not assigned.unknown	not assigned.unknown
MSGI1_11534	TC16520	7.4	24.3	27.2	5	0	-2.4	-1.9	2.3	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-"
MSGI1_11534	TC16520	7.4	24.3	27.2	5	0	-2.4	-1.9	2.3	hormone metabolism.ethylene.signal transduction	"AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-"
MSGI1_14268	TC16524	41.3	365	251.1	334.2	3.1	0	-2.6	0	development.unspecified	dormancy/auxin associated family protein  similar to dormancy/auxin associated protein-related [Arabidopsis thaliana] (TAIR:AT1G54070.1); similar to Dormancyauxin associated [Medicago truncatula] (GB:ABE80617.1); contains InterPro domain Dormancyauxin ass
MSGI1_69931	TC1653	30.3	3.6	63.8	8.9	-3.1	-2.8	-1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_61	TC16532	16.8	22.6	0.6	0.6	0	0	4.8	5.2	DNA.unspecified	"reverse transcriptase, putative / RNA-dependent DNA polymerase, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G34320.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1); contains InterPro domain Polynucleotidy"
MSGI1_3831	TC16533	23.2	1.8	9.2	1.8	-3.7	0	0	0	lipid metabolism.Phospholipid synthesis	ATGPAT6/GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase Encodes a protein with glycerol-3-phosphate acyltransferase activity. Identical to Glycerol-3-phosphate acyltransferase 6 (EC 2.3.1.15)
MSGI1_2557	TC16540	52	25.3	18.7	34	0	0	1.5	0	lipid metabolism.FA synthesis and FA elongation.pyruvate DH	"transketolase family protein  similar to PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA), pyruvate dehydrogenase (acetyl-transferring) [Arabidopsis thaliana] (TAIR:AT1G30120.1); similar to Os12g0616900 [Oryza sativa (japonica cultivar-group)] (GB:NP_0010672"
MSGI1_12629	TC16546	7.5	30.6	50.3	39.4	2	0	-2.7	0	"misc.oxidases - copper, flavone etc."	"copper amine oxidase family protein  similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT4G12290.1); similar to amine oxidase [Canavalia lineata] (GB:AAD49420.1); contains InterPro domain Copper amine oxidase; (InterPro:IPR000269)"
MSGI1_3090	TC16553	7.2	13	70	26.3	0	-1.4	-3.3	0	hormone metabolism.ethylene.synthesis-degradation	"2A6  similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G03400.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123)"
MSGI1_3090	TC16553	7.2	13	70	26.3	0	-1.4	-3.3	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_3488	TC16556	32.9	46.5	71.6	51.9	0	0	-1.1	0	cell wall.modification	"EXGT-A3 (endo-xyloglucan transferase A3); hydrolase, acting on glycosyl bonds EXGT-A3 has homology to xyloglucan endotransglucosylases/hydrolases (XTHs). Mutants in this gene show a lesion mimic phenotype associated with leaf maturation and a reduction i"
MSGI1_6153	TC16557	149.9	3.3	18.6	4.6	-5.5	0	3	0	cell wall	DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); protein binding Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. Identical to DNA-damage-repair/toleration protein DRT100 precursor (DRT100) [Arabidopsis Thaliana] (GB:Q00874;G
MSGI1_6153	TC16557	149.9	3.3	18.6	4.6	-5.5	0	3	0	DNA.repair	DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); protein binding Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. Identical to DNA-damage-repair/toleration protein DRT100 precursor (DRT100) [Arabidopsis Thaliana] (GB:Q00874;G
MSGI1_10259	TC16558	108.9	3.3	11.3	2	-5	0	3.3	0	cell wall	DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); protein binding Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. Identical to DNA-damage-repair/toleration protein DRT100 precursor (DRT100) [Arabidopsis Thaliana] (GB:Q00874;G
MSGI1_10259	TC16558	108.9	3.3	11.3	2	-5	0	3.3	0	DNA.repair	DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); protein binding Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. Identical to DNA-damage-repair/toleration protein DRT100 precursor (DRT100) [Arabidopsis Thaliana] (GB:Q00874;G
MSGI1_7374	TC16567	135	41.2	52.7	23.4	-1.7	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_4419	TC16568	79.1	122.3	35.2	135.9	0	1.9	1.2	0	cell wall.modification	"ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to E"
MSGI1_4620	TC16573	111.4	88.3	55.2	123.2	0	1.2	1	0	C1-metabolism.Methylenetetrahydrofolate dehydrogenase & Methenyltetrahydrofolate cyclohydrolase	"tetrahydrofolate dehydrogenase/cyclohydrolase, putative  similar to tetrahydrofolate dehydrogenase/cyclohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G00620.1); similar to 5,10-methylenetetrahydrofolate dehydrogenase-5,10-methenyltetrahydrofolate c"
MSGI1_4093	TC16574	48.6	15.2	60.9	24.7	-1.7	-1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_3272	TC16576	10.6	34.9	21.3	34.6	1.7	0	0	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	"BLH1 (BLH1); DNA binding / transcription factor BEL1-like homeodomain 1 (BLH1) similar to BLH4 (BLH4), DNA binding [Arabidopsis thaliana] (TAIR:AT2G23760.3); similar to BEL1-like homeodomain transcription factor [Trifolium pratense] (GB:BAE71188.1); cont"
MSGI1_2440	TC16578	40.8	88.3	102.8	50.9	1.1	0	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_3763	TC16580	33.2	71.7	59.4	34.7	1.1	0	0	1	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY11 (WRKY DNA-binding protein 11); transcription factor member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae. Identical to Probable WRKY transcription factor 11 (WRKY DNA-binding protein 11) (
MSGI1_1892	TC16588	39.9	28.4	84.1	37.6	0	-1.2	-1.1	0	cell wall.degradation.pectate lyases and polygalacturonases	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT4G23500.1); similar to Glycoside hydrolas
MSGI1_3792	TC16594	43.8	89	70.4	75.1	1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_7557	TC16598	17.4	43.3	37.6	38.5	1.3	0	0	0	nucleotide metabolism.degradation	"uricase / urate oxidase / nodulin 35, putative  Identical to Uricase (EC 1.7.3.3) (Urate oxidase) (Nodulin 35 homolog) [Arabidopsis Thaliana] (GB:O04420;GB:O64848); similar to uricase [Lotus japonicus] (GB:BAB18538.1); contains InterPro domain Uricase; ("
MSGI1_7557	TC16598	17.4	43.3	37.6	38.5	1.3	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_117656	TC166	13	18.5	0	0	0	0	4.7	5.2	not assigned.unknown	not assigned.unknown
MSGI1_2915	TC16603	31	7.2	50	11.1	-2.1	-2.2	0	0	transport.cyclic nucleotide or calcium regulated channels	"DND1 (DEFENSE NO DEATH 1); calmodulin binding / cation channel/ cyclic nucleotide binding / inward rectifier potassium channel 'defense, no death' gene (DND1) encodes a mutated cyclic nucleotide-gated cation channel; Same as CNGC2 (article ID 229): Cycli"
MSGI1_28466	TC16614	61.3	509	226.8	447.8	3.1	1	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_69930	TC16615	13	100.2	29.9	70.4	2.9	1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_58913	TC16616	3.2	1.6	110.9	140	0	0	-5.1	-6.5	PS.lightreaction.photosystem I.PSI polypeptide subunits	"PSAK (PHOTOSYSTEM I SUBUNIT K) Encodes subunit K of photosystem I reaction center. Identical to Photosystem I reaction center subunit psaK, chloroplast precursor (Photosystem I subunit X) (PSI-K) (PSAK) [Arabidopsis Thaliana] (GB:Q9SUI5;GB:Q9C8G7); simil"
MSGI1_13464	TC16617	406.5	175.5	168.4	206.1	-1.2	0	1.3	0	PS.lightreaction.photosystem I.PSI polypeptide subunits	"PSAK (PHOTOSYSTEM I SUBUNIT K) Encodes subunit K of photosystem I reaction center. Identical to Photosystem I reaction center subunit psaK, chloroplast precursor (Photosystem I subunit X) (PSI-K) (PSAK) [Arabidopsis Thaliana] (GB:Q9SUI5;GB:Q9C8G7); simil"
MSGI1_3676	TC16623	6.4	17	3.7	29	0	3	0	0	protein.degradation.subtilases	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14067.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_3676	TC16623	6.4	17	3.7	29	0	3	0	0	cell wall	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14067.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_2486	TC16624	46.5	24	13.1	27.4	0	0	1.8	0	protein.synthesis.elongation	"elongation factor Tu, putative / EF-Tu, putative  Identical to Elongation factor Tu, mitochondrial precursor (TUFA) [Arabidopsis Thaliana] (GB:Q9ZT91;GB:Q39206); similar to AtRABE1b/AtRab8D (Arabidopsis Rab GTPase homolog E1b), translation elongation fac"
MSGI1_12817	TC16625	11.2	40.6	9.5	18.7	1.9	0	0	0	protein.degradation.ubiquitin.E3.RING	"RHA2A (RING-H2 finger A2A); protein binding / zinc ion binding Encodes a putative RING-H2 finger protein RHA2a. Identical to RING-H2 zinc finger protein RHA2a (RHA2A) [Arabidopsis Thaliana] (GB:Q9ZT50); similar to RHA2B (RING-H2 FINGER PROTEIN 2B), prote"
MSGI1_62120	TC16626	6.4	20.5	25.5	23.6	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_10282	TC16632	22.8	42.9	52.8	41.5	0	0	-1.2	0	RNA.regulation of transcription.TCP transcription factor family	"AT-TCP20 (Arabidopsis thaliana teosinte branched 1, cycloidea, PCF (TCP)-domain family protein 20); transcription factor Belongs to a TCP protein transcription factor family. Members of this family contain a predicted basic-helix-loop-helix domain in"
MSGI1_14173	TC16639	6.5	19.6	73.7	17.2	0	-2.1	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_8233	TC16641	0	0	44.5	19.1	0	0	-6.5	-5.3	signalling.receptor kinases.leucine rich repeat I	"light repressible receptor protein kinase  similar to FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT2G19190.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G19230.1); simila"
MSGI1_14670	TC16652	384.9	138.8	331.5	177	-1.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_113788	TC16653	440.3	117.2	185	78.3	-1.9	-1.2	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_41143	TC16656	33.6	10.1	12.2	23.4	-1.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_14824	TC16657	38.3	11.6	25	12.9	-1.7	0	0	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	photosystem II family protein  similar to photosystem II 11 kD protein [Thermosynechococcus elongatus BP-1] (GB:NP_683253.1); similar to Os03g0333400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050024.1)
MSGI1_2047	TC16670	10.1	9.6	35.5	10.6	0	-1.7	-1.8	0	amino acid metabolism.degradation.branched-chain group.leucine	MCCB (3-METHYLCROTONYL-COA CARBOXYLASE); biotin carboxylase MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not. Identical to Methylcrotonoyl-CoA carboxyla
MSGI1_1306	TC16671	5.5	29.7	13.5	24.3	2.4	0	0	0	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G09970.1); similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine ki"
MSGI1_1306	TC16671	5.5	29.7	13.5	24.3	2.4	0	0	0	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G09970.1); similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine ki"
MSGI1_6943	TC16673	428.3	3.8	104.1	4.3	-6.8	-4.6	2	0	cell wall.modification	"EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4); hydrolase, acting on glycosyl bonds EXGT-A4, endoxyloglucan transferase, Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 5 precursor (EC 2.4.1.207) (At-XTH5) (XTH-5) (XTH5) [Arabidopsis Tha"
MSGI1_33129	TC16674	38.8	15	17.7	27	-1.4	0	0	0	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit JP650 precursor (Aromatic-rich glycoprotein JP650) (JP650) [Arabidopsis Thaliana] (GB:P92990;GB:O64599;GB:Q8H7B8;GB:Q93ZQ4); simil"
MSGI1_71208	TC16675	51.5	20.6	4.9	24.9	-1.3	2.3	3.4	0	cell wall.degradation.pectate lyases and polygalacturonases	JP630; polygalacturonase Encodes aromatic rich glycoprotein JP630. Identical to Probable polygalacturonase non-catalytic subunit JP630 precursor (Aromatic-rich glycoprotein JP630) (JP630) [Arabidopsis Thaliana] (GB:P92982;GB:Q9S9K5); similar to BURP doma
MSGI1_13874	TC16678	25.9	42.6	67.2	62.5	0	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_1793	TC1668	24.9	42.9	25	14.9	0	0	0	1.5	not assigned.unknown	not assigned.unknown
MSGI1_2160	TC16680	15.9	19.8	110.4	17	0	-2.7	-2.8	0	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2) Leucine zipper transcription factor that binds to the abscisic acid (ABA)?responsive element (ABRE) motif in the promoter region of ABA-inducible genes. Enhances drought tolerance in vegetative ti
MSGI1_2160	TC16680	15.9	19.8	110.4	17	0	-2.7	-2.8	0	RNA.regulation of transcription.bZIP transcription factor family	ABF4 (ABRE BINDING FACTOR 4); DNA binding / transcription factor/ transcriptional activator bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediate ABA-dependent stress responses. similar to ABF1 (ABSCISIC ACID RE
MSGI1_4472	TC16682	38.3	51	113.2	73.9	0	0	-1.6	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_4472	TC16682	38.3	51	113.2	73.9	0	0	-1.6	0	development.unspecified	"nodulin MtN21 family protein  similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT3G28080.1); similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT3G28100.1); similar to Protein of unknown function DUF6, transmembrane"
MSGI1_6538	TC16684	8.9	12.4	36.1	8.4	0	-2.1	-2	0	cell wall.modification	"XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4); hydrolase, acting on glycosyl bonds xyloglucan endotransglycosylase-related protein (XTR4) Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 30 precursor (EC 2.4.1.207) (At-XTH30) (XTH-30) ("
MSGI1_37547	TC16685	2.9	5.3	46.3	11.8	0	-2	-4	0	cell wall.modification	"XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4); hydrolase, acting on glycosyl bonds xyloglucan endotransglycosylase-related protein (XTR4) Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 30 precursor (EC 2.4.1.207) (At-XTH30) (XTH-30) ("
MSGI1_6306	TC16687	25.2	21.9	10.9	32.4	0	1.6	0	0	major CHO metabolism.degradation.starch.starch cleavage	AMY3/ATAMY3 (ALPHA-AMYLASE-LIKE 3); alpha-amylase Encodes a plastid-localized &#945;-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation.  Expression follows circadi
MSGI1_1705	TC16688	8.7	38.5	3.6	24.7	2.1	2.8	0	0	transport.ammonium	"ATAMT2 (AMMONIUM TRANSPORTER 2); ammonium transporter encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively. Identical to Ammonium tr"
MSGI1_3343	TC1669	8.8	22.9	48.7	48.3	0	0	-2.5	0	RNA.regulation of transcription.Psudo ARR transcription factor family	"APRR5 (PSEUDO-RESPONSE REGULATOR 5); transcription regulator Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of"
MSGI1_1034	TC16692	12.8	18.1	25	48.2	0	0	0	-1.4	"misc.oxidases - copper, flavone etc."	"ARP protein (REF)  similar to oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT3G56460.1); similar to Alcohol dehydrogenase superfamily, zinc-containing; Short-chain dehydrogenase/reductase SDR [Medicago truncatula"
MSGI1_6993	TC16696	125.5	14.9	9.5	19.5	-3.1	0	3.7	0	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit JP650 precursor (Aromatic-rich glycoprotein JP650) (JP650) [Arabidopsis Thaliana] (GB:P92990;GB:O64599;GB:Q8H7B8;GB:Q93ZQ4); simil"
MSGI1_4852	TC16702	41	109.5	117	111.2	1.4	0	-1.5	0	misc.glutathione S transferases	"similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45020.1); similar to Glutathione S-transferase, C-terminal-like [Medicago truncatula] (GB:ABC75353.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro d"
MSGI1_10168	TC16710	105.4	42.5	76.4	65.7	-1.3	0	0	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"ribosomal protein L35 family protein  similar to 50S ribosomal protein L35, chloroplast precursor (CL35) (GB:P23326); contains InterPro domain Ribosomal protein L35; (InterPro:IPR001706)"
MSGI1_20362	TC16716	283	112.2	82.8	125	-1.3	0	1.8	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L27 (RPL27C)  Identical to 60S ribosomal protein L27-3 (RPL27C) [Arabidopsis Thaliana] (GB:P51419;GB:O23354); similar to 60S ribosomal protein L27 (RPL27B) [Arabidopsis thaliana] (TAIR:AT3G22230.1); similar to Ribosomal protein L27e;
MSGI1_13319	TC16721	116	173	84.2	71	0	0	0	1.3	redox.ascorbate and glutathione	B5 #4 (cytochrome b5 family protein #4); heme binding / transition metal ion binding member of Cytochromes b5 Identical to Probable cytochrome b5 isoform 2 [Arabidopsis Thaliana] (GB:O48845); similar to ATB5-B (Cytochrome b5 B) [Arabidopsis thaliana] (TAI
MSGI1_10825	TC16722	16.6	15.5	43.8	12.7	0	-1.8	-1.4	0	stress.biotic	"disease resistance protein (CC-NBS-LRR class), putative  Identical to Probable disease resistance RPP8-like protein 4 (RPP8L4) [Arabidopsis Thaliana] (GB:Q9FJK8); similar to RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8) [Arabidopsis thaliana] (TAIR:AT5G"
MSGI1_1726	TC16723	13.6	59.5	3	2.3	2.1	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_4679	TC16725	4.3	21.6	7.7	16.6	2.3	0	0	0	transport.ABC transporters and multidrug resistance systems	"ABC transporter family protein  Identical to Multidrug resistance protein 13 (P-glycoprotein 15) (MDR13) [Arabidopsis Thaliana] (GB:Q9LHD1); similar to PGP18 (P-GLYCOPROTEIN 18), ATPase, coupled to transmembrane movement of substances [Arabidopsis thalia"
MSGI1_20872	TC16726	2	18	10	12.4	3.2	0	0	0	transport.ABC transporters and multidrug resistance systems	"ABC transporter family protein  Identical to Multidrug resistance protein 13 (P-glycoprotein 15) (MDR13) [Arabidopsis Thaliana] (GB:Q9LHD1); similar to PGP18 (P-GLYCOPROTEIN 18), ATPase, coupled to transmembrane movement of substances [Arabidopsis thalia"
MSGI1_842	TC16729	10.3	37	36	13.2	1.8	0	-1.8	1.5	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS5 (Arabidopsis thaliana trehalose phosphatase/synthase 5); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that"
MSGI1_1942	TC1673	35.9	5.5	36.4	6.7	-2.7	-2.4	0	0	cell wall	"CYP77A4 (cytochrome P450, family 77, subfamily A, polypeptide 4); oxygen binding encodes a protein with cytochrome P450 domain similar to CYP77A7 (cytochrome P450, family 77, subfamily A, polypeptide 7, unfertilized embryo sac 9), oxygen binding [Arabido"
MSGI1_1942	TC1673	35.9	5.5	36.4	6.7	-2.7	-2.4	0	0	misc.cytochrome P450	"CYP77A4 (cytochrome P450, family 77, subfamily A, polypeptide 4); oxygen binding encodes a protein with cytochrome P450 domain similar to CYP77A7 (cytochrome P450, family 77, subfamily A, polypeptide 7, unfertilized embryo sac 9), oxygen binding [Arabido"
MSGI1_7456	TC16730	106.7	51.2	50.3	59.3	-1.1	0	1.1	0	mitochondrial electron transport / ATP synthesis.cytochrome c oxidase	"COX6B (CYTOCHROME C OXIDASE 6B); cytochrome-c oxidase subunit 6b of cytochrome c oxidase similar to cytochrome c oxidase subunit 6b, putative [Arabidopsis thaliana] (TAIR:AT5G57815.1); similar to putative cytochrome c oxidase subunit [Triticum aestivum]"
MSGI1_59824	TC16731	25	14.3	4.1	7.6	0	0	2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_5791	TC16732	793.1	4.7	425.4	85.3	-7.4	-2.3	0	-4.2	cell wall	"acid phosphatase, putative  similar to acid phosphatase, putative [Arabidopsis thaliana] (TAIR:AT5G51260.1); similar to acid phosphatase 1 (GB:1908418A); contains InterPro domain Acid phosphatase (Class B); (InterPro:IPR005519); contains InterPro domain"
MSGI1_5791	TC16732	793.1	4.7	425.4	85.3	-7.4	-2.3	0	-4.2	misc.acid and other phosphatases	"acid phosphatase, putative  similar to acid phosphatase, putative [Arabidopsis thaliana] (TAIR:AT5G51260.1); similar to acid phosphatase 1 (GB:1908418A); contains InterPro domain Acid phosphatase (Class B); (InterPro:IPR005519); contains InterPro domain"
MSGI1_1088	TC16740	18.6	20.4	92.2	14.4	0	-2.7	-2.3	0	transport.nitrate	nitrate transporter (NTP3)  similar to nitrate transporter (NTP2) [Arabidopsis thaliana] (TAIR:AT2G26690.1); similar to Os02g0580900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047240.1); similar to nitrate transporter [Prunus persica] (GB:BAC8142
MSGI1_12515	TC16741	237.4	99.9	59.1	95.6	-1.2	0	2	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S12 (RPS12C)  Identical to 40S ribosomal protein S12-2 (RPS12C) [Arabidopsis Thaliana] (GB:Q9SKZ3); similar to 40S ribosomal protein S12 (RPS12A) [Arabidopsis thaliana] (TAIR:AT1G15930.1); similar to Ribosomal protein L7Ae/L30e/S12e/
MSGI1_3757	TC16745	10.4	33.7	9.4	12.9	1.7	0	0	0	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase I	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G56050.2); similar to ser-thr protein kinase [Gossypium hirsutum] (GB:AAO59488.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009);
MSGI1_3757	TC16745	10.4	33.7	9.4	12.9	1.7	0	0	0	cell wall	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G56050.2); similar to ser-thr protein kinase [Gossypium hirsutum] (GB:AAO59488.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009);
MSGI1_2119	TC16747	29.3	23.5	71.9	64.3	0	0	-1.3	-1.5	transport.peptides and oligopeptides	proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G54140.1); similar to Os06g0264500 [Oryza sativa (japonica cultivar-group)] (GB:NP_00105
MSGI1_42088	TC1675	18.7	16.9	38.5	7.3	0	-2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_30156	TC16760	15.8	28.5	6.3	3.9	0	0	0	2.9	not assigned.unknown	not assigned.unknown
MSGI1_10716	TC16770	46.6	32.5	20.6	35.4	0	0	1.2	0	RNA.regulation of transcription.Alfin-like	"PHD finger family protein  similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT5G05610.2); similar to PHD4 [Medicago truncatula] (GB:ABJ99761.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro"
MSGI1_2669	TC1678	115.5	59.5	0	0	0	0	7.9	6.9	not assigned.unknown	not assigned.unknown
MSGI1_301	TC16780	62.4	51.4	101.7	25.4	0	-2	0	0	lipid metabolism.lipid degradation.lysophospholipases.phospholipase D	ATPLDDELTA (Arabidopsis thaliana phospholipase D delta); phospholipase D Encodes a protein with phospholipase D activity. Involved in phospolipase metabolism. Mutants are affected in hydrogen peroxide mediated cell death. Identical to Phospholipase D del
MSGI1_2811	TC16785	6.5	23.6	29.8	20.3	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_7308	TC16786	2.6	8.7	21.1	17.9	0	0	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_4170	TC16787	14	64.4	21.5	53.3	2.2	1.3	0	0	transport.amino acids	"ProT2 (PROLINE TRANSPORTER 2); amino acid permease Encodes a proline transporter with affinity for gly betaine, proline, and GABA.  Protein is expressed most highly in the roots. similar to ProT1 (PROLINE TRANSPORTER 1) [Arabidopsis thaliana] (TAIR:AT2G3"
MSGI1_1672	TC16788	24.1	22.9	39.4	55	0	0	0	-1.3	TCA / org. transformation.other organic acid transformaitons.aconitase	"aconitase family protein / aconitate hydratase family protein  similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT4G26970.1); similar to 3-isopropylmalate dehydratase large subun"
MSGI1_1672	TC16788	24.1	22.9	39.4	55	0	0	0	-1.3	TCA / org. transformation.TCA.aconitase	"aconitase family protein / aconitate hydratase family protein  similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT4G26970.1); similar to 3-isopropylmalate dehydratase large subun"
MSGI1_17569	TC1679	226.7	145.7	580.2	206.7	0	-1.5	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_2914	TC16799	20.1	17.9	46.3	16.6	0	-1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_14942	TC168	11.2	18.6	1.4	1.6	0	0	0	3.5	not assigned.unknown	not assigned.unknown
MSGI1_8770	TC16806	54	39.1	96.1	34.7	0	-1.5	0	0	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19180.1); similar to PnFL-2 [Ipomoea nil] (GB:AAG49896.1); contains InterPro domain ZIM; (InterPro:IPR010399)
MSGI1_4606	TC1681	89.9	33	30.1	49.3	-1.4	0	1.6	0	protein.synthesis.mito/plastid ribosomal protein.unknown	"ribosomal protein S5 family protein  Identical to 30S ribosomal protein S5, chloroplast precursor (rps5) [Arabidopsis Thaliana] (GB:P93014); similar to ribosomal protein S5 family protein [Arabidopsis thaliana] (TAIR:AT1G64880.1); similar to 30S ribosoma"
MSGI1_2873	TC16821	9.9	31.3	22.1	20.6	1.7	0	0	0	signalling.receptor kinases.extensin	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G20300.1); similar to Os01g0709500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044034.1); similar to putative receptor protein kinase PERK1 [Or
MSGI1_2873	TC16821	9.9	31.3	22.1	20.6	1.7	0	0	0	cell wall	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G20300.1); similar to Os01g0709500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044034.1); similar to putative receptor protein kinase PERK1 [Or
MSGI1_15348	TC16853	110	57.8	37	52.2	0	0	1.6	0	protein.synthesis.misc ribososomal protein	ATRPS13A (RIBOSOMAL PROTEIN S13A); structural constituent of ribosome Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development Identical to 40S ribosomal protein S13-1 (RPS13A) [Arabidopsis Thaliana] (GB:P59223;GB:P49203;G
MSGI1_12214	TC16856	219	112.8	80.9	95.9	0	0	1.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L30 (RPL30A)  Identical to Putative 60S ribosomal protein L30-1 (RPL30A) [Arabidopsis Thaliana] (GB:Q9C8F7); similar to 60S ribosomal protein L30 (RPL30B) [Arabidopsis thaliana] (TAIR:AT1G77940.1); similar to 60S ribosomal protein L3
MSGI1_2933	TC16860	50.3	38.2	70.9	77.1	0	0	0	-1	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	"mannitol dehydrogenase, putative  Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G2"
MSGI1_10715	TC16863	197	126.7	95	292	0	1.6	1.1	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_6942	TC16874	13.9	12.8	38.2	9	0	-2.1	0	0	transport.unspecified anions	CLC-B (chloride channel protein B); anion channel/ voltage-gated chloride channel member of Anion channel protein family Identical to Chloride channel protein CLC-b (AtCLC-b) (CLC-B) [Arabidopsis Thaliana] (GB:P92942); similar to chloride channel-like (C
MSGI1_10474	TC16881	19.7	23.8	91.9	15.8	0	-2.5	-2.2	0	redox.ascorbate and glutathione.glutathione	"ATGPX5 (GLUTATHIONE PEROXIDASE 5); glutathione peroxidase Encodes glutathione peroxidase. Identical to Probable glutathione peroxidase 5 (EC 1.11.1.9) (GPX5) [Arabidopsis Thaliana] (GB:Q9LYB4); similar to ATGPX4 (GLUTATHIONE PEROXIDASE 4), glutathione pe"
MSGI1_7173	TC16888	35.2	46	34.8	108.1	0	1.6	0	-1.2	cell wall	"APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3); adenine phosphoribosyltransferase Encodes an adenine phosphoribosyltransferase (APT; EC 2.4.2.7), which is a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. APT3 has higher"
MSGI1_7173	TC16888	35.2	46	34.8	108.1	0	1.6	0	-1.2	nucleotide metabolism.salvage.phosphoribosyltransferases.aprt	"APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3); adenine phosphoribosyltransferase Encodes an adenine phosphoribosyltransferase (APT; EC 2.4.2.7), which is a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. APT3 has higher"
MSGI1_2397	TC16889	42.9	67.6	24.3	58.8	0	1.3	0	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	ATHB-1 (Homeobox-leucine zipper protein HAT5); transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf development. Identical to Homeobox-leucine zipper protein HAT5 (Homeodomain-leucine zip
MSGI1_16317	TC16892	18.2	147.7	152.3	370.9	3	1.3	-3.1	-1.3	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"esterase, putative  similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT2G23580.1); similar to ethylene-induced esterase [Citrus sinensis] (GB:AAK58599.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:I"
MSGI1_16317	TC16892	18.2	147.7	152.3	370.9	3	1.3	-3.1	-1.3	hormone metabolism.ethylene.induced-regulated-responsive-activated	"esterase, putative  similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT2G23580.1); similar to ethylene-induced esterase [Citrus sinensis] (GB:AAK58599.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:I"
MSGI1_7408	TC16895	85	38.1	48.7	72.3	-1.2	0	0	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"RPL15 (ribosomal protein L15) encodes a plastid ribosomal protein CL15, a constituent of the large subunit of the ribosomal complex Identical to 50S ribosomal protein L15, chloroplast precursor (CL15) (RPL15) [Arabidopsis Thaliana] (GB:P25873;GB:Q9LU99);"
MSGI1_74422	TC169	60.6	81.1	1	0	0	0	5.9	7.3	not assigned.unknown	not assigned.unknown
MSGI1_4821	TC1690	17.4	42.5	41.1	30.2	1.3	0	0	0	stress.abiotic.touch/wounding	wound-responsive protein-related  similar to wound-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G19660.2); similar to wound inducive gene [Nicotiana tabacum] (GB:BAA95791.1); contains domain no description (G3D.4.10.860.10)
MSGI1_17110	TC16901	23.7	81.4	46.9	91.3	1.8	1	0	0	protein.postranslational modification	"CIPK12 (CIPK12); kinase Encodes CBL-interacting protein kinase 12 (CIPK12). similar to CIPK19 (CIPK19), kinase [Arabidopsis thaliana] (TAIR:AT5G45810.1); similar to CIPK13 (CIPK13), kinase [Arabidopsis thaliana] (TAIR:AT2G34180.1); similar to CIPK18 (CIP"
MSGI1_3031	TC16902	46.2	13.2	21.6	16.6	-1.8	0	0	0	misc.UDP glucosyl and glucoronyl transferases	"FRA8 (FRAGILE FIBER8); transferase Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransfer"
MSGI1_3031	TC16902	46.2	13.2	21.6	16.6	-1.8	0	0	0	cell wall	"FRA8 (FRAGILE FIBER8); transferase Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransfer"
MSGI1_8386	TC16903	63.9	40.1	28.4	31.4	0	0	1.2	0	mitochondrial electron transport / ATP synthesis.cytochrome c reductase	"ubiquinol-cytochrome C reductase complex 14 kDa protein, putative  similar to ubiquinol-cytochrome C reductase complex 14 kDa protein, putative [Arabidopsis thaliana] (TAIR:AT4G32470.1); similar to Ubiquinol-cytochrome c reductase complex 14 kDa protein"
MSGI1_3016	TC1691	33.1	35.9	158.3	53.8	0	-1.6	-2.3	0	cell wall	"alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative  similar to ATAGAL2 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 2), alpha-galactosidase [Arabidopsis thaliana] (TAIR:AT5G08370.2); similar to glycosyl hydr"
MSGI1_3016	TC1691	33.1	35.9	158.3	53.8	0	-1.6	-2.3	0	minor CHO metabolism.galactose.alpha-galactosidases	"alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative  similar to ATAGAL2 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 2), alpha-galactosidase [Arabidopsis thaliana] (TAIR:AT5G08370.2); similar to glycosyl hydr"
MSGI1_20138	TC16917	36.7	19.5	13.9	18.8	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_8440	TC16919	44.2	139.8	114	35.5	1.7	-1.7	-1.4	2	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	RAP2.4 (related to AP2 4); DNA binding / transcription factor encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. There are 8 members in this subfamily. similar to AP2 domain-co
MSGI1_6612	TC16929	43.1	129.4	14.4	65.5	1.6	2.2	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_12728	TC1693	58.7	28.3	17.3	14.1	0	0	1.8	0	cell wall.pectin*esterases.PME	ATPME1 (Arabidopsis thaliana pectin methylesterase 1); pectinesterase encodes a pectin methylesterase Identical to Pectinesterase-1 precursor (EC 3.1.1.11) (Pectin methylesterase 1) (PE 1) (PME1) [Arabidopsis Thaliana] (GB:Q43867); similar to pectinester
MSGI1_7213	TC16931	38.6	57.9	36.1	72.1	0	1	0	0	protein.degradation.ubiquitin.E3.SCF.FBOX	F-box family protein  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G07610.1); similar to F-box protein [Capsella rubella] (GB:AAR15468.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galac
MSGI1_17987	TC16932	77.8	37.9	27.4	44.1	-1	0	1.5	0	protein.synthesis.misc ribososomal protein	"EMB1080 (EMBRYO DEFECTIVE 1080); structural constituent of ribosome  Identical to 40S ribosomal protein S11-1 (RPS11A) [Arabidopsis Thaliana] (GB:P16181); similar to RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA), structural constituent of ribosome [Arabidopsis"
MSGI1_5536	TC16936	231.3	13.6	53.2	7.1	-4.1	-2.9	2.1	0	hormone metabolism.auxin.induced-regulated-responsive-activated	IAA14 (SOLITARY ROOT); transcription factor IAA14 is a member of the Aux/IAA protein family.   Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in st
MSGI1_5536	TC16936	231.3	13.6	53.2	7.1	-4.1	-2.9	2.1	0	RNA.regulation of transcription.Aux/IAA family	IAA14 (SOLITARY ROOT); transcription factor IAA14 is a member of the Aux/IAA protein family.   Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in st
MSGI1_1339	TC16937	16	23.8	38.4	10.3	0	-1.9	0	0	transport.unspecified cations	ATSDAT/ATTDT (TONOPLAST DICARBOXYLATE TRANSPORTER); malate transporter/ sodium:dicarboxylate symporter Encodes a tonoplast malate/fumarate transporter. Identical to Tonoplast dicarboxylate transporter (AttDT) (Vacuolar malate transporter) (Sodium-dicarbo
MSGI1_4118	TC1694	14.7	26.1	46.8	22.7	0	0	-1.7	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	basic helix-loop-helix (bHLH) family protein  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G51140.1); similar to Os08g0506700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062190.1); similar to Aldehyde dehy
MSGI1_6782	TC16940	1.5	33.9	11.3	30	4.5	0	0	0	misc.cytochrome P450	"CYP76C4 (cytochrome P450, family 76, subfamily C, polypeptide 4); oxygen binding member of CYP76C Identical to Cytochrome P450 76C4 (EC 1.14.-.-) (CYP76C4) [Arabidopsis Thaliana] (GB:O64635); similar to CYP76C2 (cytochrome P450, family 76, subfamily C, p"
MSGI1_14823	TC16941	115.2	6.1	88.6	18.2	-4.2	-2.3	0	0	cell wall.modification	"ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thalian"
MSGI1_85731	TC16942	43	2.6	20.5	9.4	-4	0	0	0	cell wall.modification	"ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thalian"
MSGI1_14014	TC16949	42.4	13.9	18.2	14.8	-1.6	0	0	0	hormone metabolism.ethylene.synthesis-degradation	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT5G20400.1); similar to ethylene-forming-enzyme-like dioxygenase [Prunus armeniaca] (GB:AAB88878.1); contain"
MSGI1_14014	TC16949	42.4	13.9	18.2	14.8	-1.6	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_63914	TC16951	47.7	6.2	8.6	5.2	-2.9	0	2.5	0	hormone metabolism.ethylene.synthesis-degradation	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT5G20400.1); similar to ethylene-forming-enzyme-like dioxygenase [Prunus armeniaca] (GB:AAB88878.1); contain"
MSGI1_1586	TC16962	80.3	5.8	12.4	9.6	-3.8	0	2.7	0	cell wall	"SKS4 (SKU5 Similar 4); copper ion binding / oxidoreductase  similar to SKS6 (SKU5 Similar 6), pectinesterase [Arabidopsis thaliana] (TAIR:AT1G41830.1); similar to SKS8 (SKU5 Similar 8), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1"
MSGI1_1586	TC16962	80.3	5.8	12.4	9.6	-3.8	0	2.7	0	"misc.oxidases - copper, flavone etc."	"SKS4 (SKU5 Similar 4); copper ion binding / oxidoreductase  similar to SKS6 (SKU5 Similar 6), pectinesterase [Arabidopsis thaliana] (TAIR:AT1G41830.1); similar to SKS8 (SKU5 Similar 8), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1"
MSGI1_2705	TC16964	67.6	8.5	61.8	13.5	-3	-2.2	0	0	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit JP650 precursor (Aromatic-rich glycoprotein JP650) (JP650) [Arabidopsis Thaliana] (GB:P92990;GB:O64599;GB:Q8H7B8;GB:Q93ZQ4); simil"
MSGI1_6070	TC16965	85.9	198.8	52.6	120.4	1.2	1.2	0	0	cell wall.cell wall proteins.AGPs	FLA12 (fasciclin-like arabinogalactan-protein 12)  Identical to Fasciclin-like arabinogalactan protein 12 precursor (FLA12) [Arabidopsis Thaliana] (GB:Q8LEE9;GB:Q94EG7;GB:Q9FKJ8); similar to FLA11 (fasciclin-like arabinogalactan-protein 11) [Arabidopsis t
MSGI1_23706	TC16966	38.4	17.1	7.2	6.9	0	0	2.4	0	nucleotide metabolism.deoxynucleotide metabolism.ribonucleoside-diphosphate reductase	TSO2 (TSO2); ribonucleoside-diphosphate reductase Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in
MSGI1_33495	TC16967	29.4	13.1	7.5	8.4	0	0	2	0	nucleotide metabolism.deoxynucleotide metabolism.ribonucleoside-diphosphate reductase	TSO2 (TSO2); ribonucleoside-diphosphate reductase Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in
MSGI1_3230	TC16968	34	21.6	12.2	18.3	0	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_13235	TC16973	89.8	33.8	67.2	47.2	-1.4	0	0	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"50S ribosomal protein L24, chloroplast  (CL24)  Identical to 50S ribosomal protein L24, chloroplast precursor (CL24) (RPL24) [Arabidopsis Thaliana] (GB:P92959;GB:Q9FIU4); similar to KOW domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G23535.1);"
MSGI1_1299	TC16975	63.1	3.1	14.7	13.2	-4.3	0	2.1	0	misc.acid and other phosphatases	"ATPAP27/PAP27 (purple acid phosphatase 27); acid phosphatase/ protein serine/threonine phosphatase  similar to ATPAP24/PAP24 (purple acid phosphatase 24), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT4G24890.1); s"
MSGI1_1299	TC16975	63.1	3.1	14.7	13.2	-4.3	0	2.1	0	cell wall	"ATPAP27/PAP27 (purple acid phosphatase 27); acid phosphatase/ protein serine/threonine phosphatase  similar to ATPAP24/PAP24 (purple acid phosphatase 24), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT4G24890.1); s"
MSGI1_3967	TC16976	16.9	26.7	17.5	7.6	0	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_31444	TC16982	0.1	0.1	50	60.6	0	0	-9	-9.2	not assigned.unknown	not assigned.unknown
MSGI1_9038	TC16985	7.8	11.8	34.1	28.5	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_8151	TC170	22.2	31.9	12.6	9.4	0	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_4259	TC17001	309.9	275.4	147.3	216.8	0	0	1.1	0	cell wall	GRF2 (GENERAL REGULATORY FACTOR 2); protein phosphorylated amino acid binding G-box binding factor GF14 omega encoding a 14-3-3 protein Identical to 14-3-3-like protein GF14 omega (General regulatory factor 2) (GRF2) [Arabidopsis Thaliana] (GB:Q01525); s
MSGI1_4259	TC17001	309.9	275.4	147.3	216.8	0	0	1.1	0	signalling.14-3-3 proteins	GRF2 (GENERAL REGULATORY FACTOR 2); protein phosphorylated amino acid binding G-box binding factor GF14 omega encoding a 14-3-3 protein Identical to 14-3-3-like protein GF14 omega (General regulatory factor 2) (GRF2) [Arabidopsis Thaliana] (GB:Q01525); s
MSGI1_7407	TC17003	25.5	169.3	25.7	106.3	2.7	2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_3984	TC17005	60.9	53.5	51.3	9.7	0	-2.4	0	2.5	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY70 (WRKY DNA-binding protein 70); transcription factor member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of  JA-signaling is partly
MSGI1_6865	TC17009	11.4	42	42.2	43.5	1.9	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_3919	TC17010	6.2	7.4	36.1	24.4	0	0	-2.5	0	amino acid metabolism.degradation.branched-chain group.shared	"alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative  Identical to Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial precursor (EC 2.6.1.44) (Beta-alanine-pyruvate aminotransferas"
MSGI1_3919	TC17010	6.2	7.4	36.1	24.4	0	0	-2.5	0	amino acid metabolism.synthesis.central amino acid metabolism.alanine.alanine-glyoxylate aminotransferase	"alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative  Identical to Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial precursor (EC 2.6.1.44) (Beta-alanine-pyruvate aminotransferas"
MSGI1_3176	TC17018	56.9	28.7	18.2	45.4	0	1.3	1.6	0	RNA.RNA binding	"29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative  Identical to Putative ribonucleoprotein At2g37220, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9ZUU4); similar to CP29 (chloroplast 29 kDa ribonucleoprotein), RNA"
MSGI1_3176	TC17018	56.9	28.7	18.2	45.4	0	1.3	1.6	0	RNA.regulation of transcription.unclassified	"29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative  Identical to Putative ribonucleoprotein At2g37220, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9ZUU4); similar to CP29 (chloroplast 29 kDa ribonucleoprotein), RNA"
MSGI1_18680	TC1702	216.8	155.8	467.5	370.3	0	0	-1.1	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_3258	TC17027	7.8	11.6	32	11.1	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_5574	TC17038	14.6	19.3	1539.2	37.1	0	-5.4	-6.7	0	not assigned.unknown	not assigned.unknown
MSGI1_16561	TC17045	13.7	22.4	50	37.7	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_4001	TC17055	13.4	14.2	54.2	14.8	0	-1.9	-2	0	hormone metabolism.cytokinin.signal transduction	"AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2. similar to WOL (CYTOKININ RESPONSE 1) [Arabidopsis"
MSGI1_11966	TC17059	29.1	65.9	20.4	30.1	1.2	0	0	1.1	not assigned.unknown	not assigned.unknown
MSGI1_40070	TC17062	9.1	13.6	1.1	1	0	0	0	3.8	secondary metabolism.phenylpropanoids	"4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0"
MSGI1_8173	TC17070	13.6	84.3	49.9	33.7	2.6	0	-1.9	1.3	RNA.regulation of transcription.C3H zinc finger family	"zinc finger (CCCH-type) family protein  similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT4G29190.1); similar to Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE91976.1); contains InterPro domain Zinc finger, CCCH-type;"
MSGI1_4790	TC17076	27.1	69.6	50.2	88.7	1.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_40966	TC17077	23.3	42.7	9.3	32.3	0	1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_5212	TC1708	44.3	94.5	53.6	70.4	1.1	0	0	0	RNA.regulation of transcription.MYB-related transcription factor family	myb family transcription factor  similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G58900.1); similar to MYB transcription factor [Hevea brasiliensis] (GB:AAU06309.1); contains InterPro domain Homeodomain-related; (InterPro:IPR01
MSGI1_20418	TC17086	34.4	47.3	71.9	54.5	0	0	-1.1	0	stress.abiotic.heat	"ATHSP17.4 (Arabidopsis thaliana heat shock protein 17.4) member of the class I small heat-shock protein (sHSP) family, which accounts for the majority of sHSPs in maturing seeds Identical to 17.4 kDa class I heat shock protein (HSP 17.4) (HSP17.4) [Arabi"
MSGI1_15347	TC17093	31	61.9	45.2	138.2	0	1.6	0	-1.2	"RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family"	LOB domain protein 38 / lateral organ boundaries domain protein 38 (LBD38)  Identical to LOB domain-containing protein 38 (LBD38) [Arabidopsis Thaliana] (GB:Q9SN23;GB:Q8LDW4); similar to LOB domain protein 37 / lateral organ boundaries domain protein 37
MSGI1_2988	TC17094	57.5	217.3	77.7	178.2	1.9	1.2	0	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN); lipid binding cell wall-plasma membrane linker protein homolog (CWLP) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22142.1); similar to cell wall-plasma membrane linker protein [Brassica napu
MSGI1_8010	TC17098	34.7	9.5	14.4	21	-1.9	0	0	0	major CHO metabolism.synthesis.starch.starch synthase	"starch synthase, putative  Identical to Probable granule-bound starch synthase 1, chloroplast precursor (EC 2.4.1.242) (Granule-bound starch synthase I) (GBSS-I) (WAXY) [Arabidopsis Thaliana] (GB:Q9MAQ0); similar to glycogen synthase, putative [Arabidops"
MSGI1_29751	TC171	9.5	13.9	0.8	0.6	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_4221	TC17103	21.8	40.5	76.8	45.7	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_4010	TC17109	8.4	5.6	31.6	5.7	0	-2.5	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_11481	TC17110	48.6	49.8	19.1	37.3	0	0	1.3	0	RNA.regulation of transcription.unclassified	zinc finger (Ran-binding) family protein  similar to zinc finger (Ran-binding) family protein [Arabidopsis thaliana] (TAIR:AT5G25490.1); similar to zinc finger protein-like protein [Gossypium hirsutum] (GB:AAZ94630.1); contains InterPro domain Zinc finge
MSGI1_11481	TC17110	48.6	49.8	19.1	37.3	0	0	1.3	0	signalling.G-proteins	zinc finger (Ran-binding) family protein  similar to zinc finger (Ran-binding) family protein [Arabidopsis thaliana] (TAIR:AT5G25490.1); similar to zinc finger protein-like protein [Gossypium hirsutum] (GB:AAZ94630.1); contains InterPro domain Zinc finge
MSGI1_3711	TC17113	7.5	19	27.2	14.4	0	0	-1.9	0	signalling.calcium	"CPK9 (CALMODULIN-DOMAIN PROTEIN KINASE 9); calcium- and calmodulin-dependent protein kinase/ kinase calmodulin-domain protein kinase CDPK isoform 9 (CPK9) similar to CPK33 (calcium-dependent protein kinase 33), calcium- and calmodulin-dependent protein k"
MSGI1_6765	TC17114	11.5	3.9	34.2	10.7	0	-1.7	-1.6	0	transport.peptides and oligopeptides	"proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G16180.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32296.1); sim"
MSGI1_10909	TC17115	245.4	145.5	105.9	219.1	0	1	1.2	0	protein.synthesis.misc ribososomal protein	ATBBC1 (breast basic conserved 1); structural constituent of ribosome Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1). Identical to 60S ribosomal protein L13-1 (Protein BBC1 homolog) (RPL13B) [Arabidopsis Thaliana] (GB:
MSGI1_70826	TC17131	6.2	26.6	0	0	2.1	0	0	5.7	not assigned.unknown	not assigned.unknown
MSGI1_19152	TC17132	11.9	42.9	16.6	14.4	1.9	0	0	1.6	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase I	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G40270.1); similar to ser-thr protein kinase [Gossypium hirsutum] (GB:AAO59488.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009);
MSGI1_2479	TC17135	7	13.6	27.6	9.2	0	0	-2	0	protein.postranslational modification	"protein phosphatase 2C, putative / PP2C, putative  similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT3G05640.2); similar to Protein phosphatase 2C-like [Medicago truncatula] (GB:ABE85677.1); contains InterPro dom"
MSGI1_6057	TC17138	96.6	193.4	570.4	131.4	1	-2.1	-2.6	0	hormone metabolism.auxin.induced-regulated-responsive-activated	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15450.1); similar to unknown [Glycine max] (GB:AAG00940.1); contains domain no description (G3D.3.60.20.10); contains domain N-terminal nucleophile aminohydrolases (Ntn hydrolases) (SSF56235)
MSGI1_4229	TC17140	25.4	100.2	13.2	13.1	2	0	0	2.9	transport.metal	ZIP1 (ZINC TRANSPORTER 1 PRECURSOR); zinc ion transporter A member of Zrt- and Irt-related protein (ZIP) family.  transcript is induced in response to zinc deficiency in the root. Identical to Zinc transporter 1 precursor (ZRT/IRT-like protein 1) (ZIP1)
MSGI1_14013	TC17143	18.8	0.6	4.7	1.5	-5	0	0	0	misc.UDP glucosyl and glucoronyl transferases	UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22360.1); similar to UDP-glycosyltransferase 85A8 [Stevia rebaudiana] (GB:AAR06913.1); contains
MSGI1_9438	TC17146	75.2	8.8	15.8	12.1	-3.1	0	2.3	0	cell wall.degradation.pectate lyases and polygalacturonases	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G41870.1); similar to Os05g0587000 [Oryz
MSGI1_4662	TC17149	98.4	161.4	205.3	162.3	0	0	-1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_16965	TC17152	250.9	146.9	90.6	130.3	0	0	1.5	0	protein.synthesis.misc ribososomal protein	"40S ribosomal protein S15A (RPS15aF)  Identical to 40S ribosomal protein S15a-1 (RPS15AF) [Arabidopsis Thaliana] (GB:P42798;GB:Q7GD83); similar to RPS15A (RIBOSOMAL PROTEIN S15A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G07770."
MSGI1_3279	TC17153	4.9	36	4.3	44.5	2.9	3.4	0	0	misc.cytochrome P450	"CYP709B2 (cytochrome P450, family 709, subfamily B, polypeptide 2); oxygen binding member of CYP709B similar to CYP709B3 (cytochrome P450, family 709, subfamily B, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G27710.1); similar to CYP70"
MSGI1_9024	TC1716	45.7	26.8	356.3	25.9	0	-3.8	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_6638	TC17169	28	50.8	8.7	14.3	0	0	1.7	1.8	transport.metal	"ZIP4 (ZINC TRANSPORTER 4 PRECURSOR); cation transporter A member of Zrt- and Irt-related protein (ZIP) family.  transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficien"
MSGI1_5272	TC17172	19.5	36.6	15.3	40.6	0	1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_15162	TC17177	4	10.5	20	10.4	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_1730	TC17180	13	17.5	51.8	16.4	0	-1.7	-2	0	cell wall	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G51330.1); similar to Os04g0228000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052287.1); similar to H0209A05.1 [Oryza sativa (indica cul
MSGI1_1730	TC17180	13	17.5	51.8	16.4	0	-1.7	-2	0	protein.degradation.aspartate protease	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G51330.1); similar to Os04g0228000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052287.1); similar to H0209A05.1 [Oryza sativa (indica cul
MSGI1_4152	TC17188	17.8	41.5	6.8	33.4	0	2.3	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_4152	TC17188	17.8	41.5	6.8	33.4	0	2.3	0	0	development.unspecified	"nodulin MtN21 family protein  similar to integral membrane family protein / nodulin MtN21-related [Arabidopsis thaliana] (TAIR:AT1G43650.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE81602.1); contains InterP"
MSGI1_6672	TC17198	102.9	12.5	42.4	27.4	-3	0	1.3	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT2G27130.1); similar to Plant lipid transfer protein/Par alle
MSGI1_98103	TC172	50.9	81.4	0	0	0	0	6.7	7.3	not assigned.unknown	not assigned.unknown
MSGI1_7913	TC17202	86.3	9	15	11.3	-3.3	0	2.5	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL10 (beta-galactosidase 10); beta-galactosidase member of Glycoside Hydrolase Family 35 similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative"
MSGI1_7913	TC17202	86.3	9	15	11.3	-3.3	0	2.5	0	"misc.gluco-, galacto- and mannosidases"	"BGAL10 (beta-galactosidase 10); beta-galactosidase member of Glycoside Hydrolase Family 35 similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative"
MSGI1_8870	TC17216	23	20.7	5.4	13.1	0	0	2.1	0	protein.degradation.ubiquitin.E3.SCF.FBOX	kelch repeat-containing F-box family protein  similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G67480.2); similar to Kelch motif family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA95749.1); similar to Os
MSGI1_20811	TC1722	242.3	103.4	53.8	40.2	-1.2	0	2.2	1.4	not assigned.unknown	not assigned.unknown
MSGI1_9722	TC17228	146.6	177.1	66.9	74.8	0	0	1.1	1.2	cell wall.cell wall proteins.AGPs	FLA12 (fasciclin-like arabinogalactan-protein 12)  Identical to Fasciclin-like arabinogalactan protein 12 precursor (FLA12) [Arabidopsis Thaliana] (GB:Q8LEE9;GB:Q94EG7;GB:Q9FKJ8); similar to FLA11 (fasciclin-like arabinogalactan-protein 11) [Arabidopsis t
MSGI1_19854	TC17231	61.5	16.9	9.4	12.5	-1.9	0	2.7	0	DNA.synthesis/chromatin structure.histone	"histone H2B, putative  Identical to Histone H2B.1 (HTB1) [Arabidopsis Thaliana] (GB:Q9LQQ4;GB:Q8L950); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold; (InterPro:"
MSGI1_57372	TC17232	139.7	40.6	25.5	21.6	-1.8	0	2.5	0	DNA.synthesis/chromatin structure.histone	histone H2B  Identical to Histone H2B.11 (HTB4) [Arabidopsis Thaliana] (GB:P40283;GB:Q5PP00;GB:Q8LDE5;GB:Q9FJE5); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold;
MSGI1_30999	TC17235	1.2	1	21.7	4.4	0	-2.3	-4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_2500	TC17239	7.6	35.5	10.4	19.4	2.2	0	0	0	misc.cytochrome P450	"CYP76C2 (cytochrome P450, family 76, subfamily C, polypeptide 2); oxygen binding member of CYP76C Identical to Cytochrome P450 76C2 (EC 1.14.-.-) (CYP76C2) [Arabidopsis Thaliana] (GB:O64637); similar to CYP76C4 (cytochrome P450, family 76, subfamily C, p"
MSGI1_15016	TC17246	19.6	28.8	25.7	7.3	0	0	0	2	cell wall	leucine-rich repeat family protein  similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G33020.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT2G32680.1); similar to leucine-rich repeat family pro
MSGI1_39734	TC17247	8.2	16.1	11.6	0.8	0	0	0	4.3	stress.biotic	leucine-rich repeat family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT5G27060.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT2G15080.2); similar to disease resistance family prote
MSGI1_11037	TC17250	9.4	29.4	53.4	15.9	0	-1.7	-2.5	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_11037	TC17250	9.4	29.4	53.4	15.9	0	-1.7	-2.5	0	stress.abiotic.unspecified	universal stress protein (USP) family protein  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49050.1); similar to fiber protein Fb19 [Gossypium barbadense] (GB:AAR07598.1); contains InterPro domain Universal stress protein (Usp); (InterPro:I
MSGI1_21952	TC17251	59.3	33.6	20.4	30.3	0	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_10598	TC17256	28.9	26.4	62.1	57.1	0	0	-1.1	-1.1	development.late embryogenesis abundant	"late embryogenesis abundant protein, putative / LEA protein, putative  similar to ATECP31 (late embryogenesis abundant protein ECP31) [Arabidopsis thaliana] (TAIR:AT3G22500.1); similar to Late embryogenesis abundant protein D-34 (LEA D-34) (GB:P09444); c"
MSGI1_8935	TC17260	12.9	39.2	12.8	24.5	1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_13846	TC17269	23.1	21.5	1.9	3.6	0	0	3.6	2.6	RNA.transcription	"ATRPB13.6 (Arabidopsis thaliana RNA polymerase II 13.6 kDa subunit); DNA binding / DNA-directed RNA polymerase RNA polymerase II 13.6 kDa subunit (AtRPB13.6) mRNA, Identical to DNA-directed RNA polymerase II subunit J (EC 2.7.7.6) (DNA-directed RNA polym"
MSGI1_9125	TC17272	5.5	11.8	41.1	18.3	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_4795	TC17280	30.3	4.9	48.3	12.1	-2.6	-2	0	0	stress.biotic	glycosyl hydrolase family 18 protein  similar to glycosyl hydrolase family 18 protein [Arabidopsis thaliana] (TAIR:AT4G19820.1); similar to chitinase/lysozyme [Nicotiana tabacum] (GB:CAA55128.1); contains InterPro domain Chitinase II; (InterPro:IPR011583
MSGI1_34736	TC17304	1.7	24	1.7	6.5	3.8	0	0	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	ILR3 (IAA-LEUCINE RESISTANT3); DNA binding / transcription factor  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G51070.1); similar to Prefoldin; Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE93168.1);
MSGI1_12125	TC17305	2	24.1	4.3	11.6	3.6	0	0	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	ILR3 (IAA-LEUCINE RESISTANT3); DNA binding / transcription factor  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G51070.1); similar to Prefoldin; Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE93168.1);
MSGI1_7235	TC17311	47.9	26.2	16	20.8	0	0	1.6	0	DNA.synthesis/chromatin structure	high-mobility-group protein / HMG-I/Y protein Encodes a protein belonging to the subgroup of HMGA (high mobility group A) proteins that interact with A/T-rich stretches of DNA. similar to histone H1/H5 family protein [Arabidopsis thaliana] (TAIR:AT1G4862
MSGI1_4560	TC17323	7.8	43.2	38.2	15.3	2.5	0	-2.3	1.5	RNA.regulation of transcription.GRAS transcription factor family	"SCL5; transcription factor Encodes a scarecrow-like protein (SCL5). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to Putative SCARECROW gene regu"
MSGI1_4560	TC17323	7.8	43.2	38.2	15.3	2.5	0	-2.3	1.5	development.unspecified	"SCL5; transcription factor Encodes a scarecrow-like protein (SCL5). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to Putative SCARECROW gene regu"
MSGI1_16696	TC17338	51	32.2	12.7	20.3	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_835	TC17343	35.2	28	10.9	23	0	0	1.7	0	lipid metabolism.FA synthesis and FA elongation.pyruvate kinase	"pyruvate kinase, putative  similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT5G52920.1); similar to Pyruvate kinase isozyme A, chloroplast precursor (GB:Q40545); similar to Pyruvate kinase isozyme A, chloroplast precursor (GB:Q43117); s"
MSGI1_20514	TC17347	40.7	14	78.1	61.2	-1.5	0	0	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_4994	TC1735	39	13.3	15.3	13.9	-1.6	0	1.3	0	hormone metabolism.brassinosteroid.synthesis-degradation.sterols.SMT	SMT1 (STEROL METHYLTRANSFERASE 1) SMT1 controls the level of cholesterol in plants Identical to Cycloartenol-C-24-methyltransferase (EC 2.1.1.41) (24-sterol C- methyltransferase 1) (Sterol C-methyltransferase 1) (Protein STEROL METHYLTRANSFERASE 1) (Prot
MSGI1_1328	TC17353	4.2	15.7	8.2	61.7	0	2.9	0	-2	transport.peptides and oligopeptides	"proton-dependent oligopeptide transport (POT) family protein  similar to ATPTR2-B (NITRATE TRANSPORTER 1), transporter [Arabidopsis thaliana] (TAIR:AT2G02040.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thalian"
MSGI1_8438	TC17357	4.9	21	26.5	9.4	0	0	-2.4	0	development.unspecified	nodulin MtN21 family protein  similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT4G08300.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT58856.1); similar to Os02g0768300 [Oryza sativa (japonica cultivar
MSGI1_8438	TC17357	4.9	21	26.5	9.4	0	0	-2.4	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_2073	TC17359	0	0	27.7	33.3	0	0	-5.8	-6.1	not assigned.unknown	not assigned.unknown
MSGI1_19745	TC17361	51.6	18.4	21.1	45.4	-1.5	0	1.3	-1.3	protein.synthesis.mito/plastid ribosomal protein.plastid	"ribosomal protein L17 family protein  Identical to 50S ribosomal protein L17, chloroplast precursor (CL17) (RPL17) [Arabidopsis Thaliana] (GB:Q9M385;GB:Q8LCR3); similar to ribosomal protein L17 family protein [Arabidopsis thaliana] (TAIR:AT5G09770.1); si"
MSGI1_358	TC17373	36	41.9	18.9	54.2	0	1.5	0	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase family protein  similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to lipoxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G72520.1); similar to LOX2 (LIPOXYGENASE 2) [Arabi"
MSGI1_2396	TC17378	6.3	11.9	25.7	12.8	0	0	-2	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY6 (WRKY DNA-binding protein 6); transcription factor transcription factor WRKY6 (WRKY6) Identical to WRKY transcription factor 6 (WRKY DNA-binding protein 6) (AtWRKY6) (WRKY6) [Arabidopsis Thaliana] (GB:Q9C519;GB:O04594;GB:Q9C5T1); similar to WRKY31
MSGI1_5320	TC17382	9.3	4.2	74.3	7.2	0	-3.4	-3	0	cell wall	"ATPAP27/PAP27 (purple acid phosphatase 27); acid phosphatase/ protein serine/threonine phosphatase  similar to ATPAP24/PAP24 (purple acid phosphatase 24), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT4G24890.1); s"
MSGI1_5320	TC17382	9.3	4.2	74.3	7.2	0	-3.4	-3	0	misc.acid and other phosphatases	"ATPAP27/PAP27 (purple acid phosphatase 27); acid phosphatase/ protein serine/threonine phosphatase  similar to ATPAP24/PAP24 (purple acid phosphatase 24), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT4G24890.1); s"
MSGI1_5179	TC17384	94.9	50.6	190.7	41.6	0	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_13275	TC17389	10.7	9.5	25.3	35.1	0	0	0	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_2473	TC1739	20.6	5.2	74.1	1.8	0	-5.4	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_15816	TC17390	20.4	16.1	30.6	46.1	0	0	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_27386	TC174	9.4	13.6	2.3	0.5	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_17271	TC17403	81.3	35.9	28	44.4	-1.2	0	1.5	0	protein.synthesis.misc ribososomal protein	"40S ribosomal protein S15 (RPS15D)  Identical to 40S ribosomal protein S15-4 (RPS15D) [Arabidopsis Thaliana] (GB:Q9FY64); Identical to 40S ribosomal protein S15-1 (RPS15A) [Arabidopsis Thaliana] (GB:Q08112); similar to RPS15 (RIBOSOMAL PROTEIN S15), stru"
MSGI1_3406	TC17405	119.9	5.1	14.5	2.3	-4.6	0	3	0	cell wall	"chloroplast nucleoid DNA-binding protein-related  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G54400.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71208.1); contains InterPro domain Peptidase A1, pepsin;"
MSGI1_3406	TC17405	119.9	5.1	14.5	2.3	-4.6	0	3	0	RNA.regulation of transcription.unclassified	"chloroplast nucleoid DNA-binding protein-related  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G54400.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71208.1); contains InterPro domain Peptidase A1, pepsin;"
MSGI1_3166	TC17406	48.8	11.1	77	13.1	-2.1	-2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_4258	TC17408	47.6	19.3	26.3	23.3	-1.3	0	0	0	transport.porins	"porin, putative  similar to porin, putative [Arabidopsis thaliana] (TAIR:AT3G49920.1); similar to porin-like protein [Brassica napus] (GB:AAW22622.1); contains InterPro domain Porin, eukaryotic type; (InterPro:IPR001925)"
MSGI1_15657	TC17416	30.2	13.6	32.1	5.9	0	-2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_5309	TC17425	8.3	17.1	36.2	29.1	0	0	-2.1	0	minor CHO metabolism.others	aldo/keto reductase family protein  similar to oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G37770.2); similar to aldose reductase [Di (GB:CAC32834.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395)
MSGI1_7057	TC17427	1	22.6	5.9	31.8	4.5	2.4	0	0	stress.biotic	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_7057	TC17427	1	22.6	5.9	31.8	4.5	2.4	0	0	cell wall	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_21333	TC17428	2.9	5	17.2	68.2	0	2	0	-3.8	stress.biotic	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_21333	TC17428	2.9	5	17.2	68.2	0	2	0	-3.8	cell wall	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_8958	TC17429	54.5	24.7	129.6	23.1	-1.1	-2.5	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_23235	TC17436	4.1	4.9	22.3	19.9	0	0	-2.4	0	DNA.synthesis/chromatin structure	tRNA-splicing endonuclease positive effector-related  similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:AT1G65780.1); similar to putative helicase [Oryza sativa (japonica cultivar-group)] (GB:AAM76346.1); similar
MSGI1_2922	TC17440	23.2	6.1	37.2	6.5	0	-2.5	0	0	protein.degradation.ubiquitin.E3.RING	zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G54780.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2
MSGI1_5778	TC17442	4	5.7	20.4	9.9	0	0	-2.4	0	lipid metabolism.lipid degradation.beta-oxidation.mutifunctional	MFP2 (MULTIFUNCTIONAL PROTEIN); enoyl-CoA hydratase Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA
MSGI1_10648	TC17444	12.6	29	10.8	32.3	0	1.6	0	0	cell wall	"BAM1 (big apical meristem 1); ATP binding / kinase/ protein serine/threonine kinase Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It ha"
MSGI1_10648	TC17444	12.6	29	10.8	32.3	0	1.6	0	0	signalling.receptor kinases.leucine rich repeat XI	"BAM1 (big apical meristem 1); ATP binding / kinase/ protein serine/threonine kinase Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It ha"
MSGI1_7723	TC17446	174.9	83	196.9	148.9	-1.1	0	0	0	cell wall	"ATHM4 (Arabidopsis thioredoxin M-type 4); thiol-disulfide exchange intermediate encodes a prokaryotic thioredoxin Identical to Thioredoxin M-type 4, chloroplast precursor (TRX-M4) [Arabidopsis Thaliana] (GB:Q9SEU6;GB:Q9LDP6); similar to ATHM2 (Arabidopsi"
MSGI1_7723	TC17446	174.9	83	196.9	148.9	-1.1	0	0	0	redox.thioredoxin	"ATHM4 (Arabidopsis thioredoxin M-type 4); thiol-disulfide exchange intermediate encodes a prokaryotic thioredoxin Identical to Thioredoxin M-type 4, chloroplast precursor (TRX-M4) [Arabidopsis Thaliana] (GB:Q9SEU6;GB:Q9LDP6); similar to ATHM2 (Arabidopsi"
MSGI1_618	TC17448	13.1	18.1	89.9	7.1	0	-3.7	-2.8	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"DIN10 (DARK INDUCIBLE 10); hydrolase, hydrolyzing O-glycosyl compounds encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. In"
MSGI1_5872	TC17451	12.5	47.1	18.8	27.5	1.9	0	0	0	transport.amino acids	"AAP6 (AMINO ACID PERMEASE 6); amino acid permease Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem. similar to AAP1 (AMINO ACID PERMEASE 1), amino acid permeas"
MSGI1_2921	TC17457	5.7	5.8	53.9	12.2	0	-2.1	-3.2	0	transport.amino acids	"AAP2 (AMINO ACID PERMEASE 2); amino acid permease member of AAAP family similar to AAP4 (amino acid permease 4), amino acid permease [Arabidopsis thaliana] (TAIR:AT5G63850.1); similar to AAP3 (amino acid permease 3), amino acid permease [Arabidopsis thal"
MSGI1_7073	TC17461	23	69.9	12.7	57.2	1.6	2.2	0	0	cell wall.cellulose synthesis.COBRA	"COBL4/IRX6 (COBRA-LIKE4); hydrolase, hydrolyzing O-glycosyl compounds / polysaccharide binding Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduc"
MSGI1_2344	TC17462	10.2	24.1	33.5	17	0	0	-1.7	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	ATHB-1 (Homeobox-leucine zipper protein HAT5); transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf development. Identical to Homeobox-leucine zipper protein HAT5 (Homeodomain-leucine zip
MSGI1_6438	TC17471	28.5	49	24.5	75.7	0	1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_8621	TC17481	32.7	37.1	20.5	51	0	1.3	0	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase family protein  similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to lipoxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G72520.1); similar to LOX2 (LIPOXYGENASE 2) [Arabi"
MSGI1_3925	TC17496	5.3	15	64.9	15.7	0	-2	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_34589	TC175	5.4	14.6	0.1	0.5	0	0	0	4.9	not assigned.unknown	not assigned.unknown
MSGI1_22238	TC17510	43.3	42.1	25.1	72.2	0	1.5	0	0	"misc.gluco-, galacto- and mannosidases"	glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G18070.1); similar to beta-mannosidase enzyme [Lycopersicon esculentum] (GB:AAL37714.1); similar to beta-mannosidase 3 [Oncidium Gower Ram
MSGI1_72607	TC17513	0	0	45.8	31.2	0	0	-6.5	-6	not assigned.unknown	not assigned.unknown
MSGI1_29566	TC17514	80.6	56.1	179.4	70.7	0	-1.3	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_14336	TC17519	12	9.4	103.5	17.2	0	-2.6	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_730	TC1752	65.3	50.5	33.5	49	0	0	1	0	protein.folding	"chaperonin, putative  similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G11830.1); similar to PREDICTED: similar to Chaperonin containing TCP1, subunit 3 (gamma) isoform 1 [Strongylocentrotus purpuratus] (GB:XP_780013.2); similar to Chapero"
MSGI1_8210	TC17522	51	8	61.7	22.8	-2.7	-1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_14579	TC17523	14	35.4	13	8.5	0	0	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_7681	TC17525	58	70.8	27.2	28.2	0	0	1.1	1.3	not assigned.unknown	not assigned.unknown
MSGI1_58265	TC17528	14	5.2	31.1	9.1	0	-1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_87743	TC17529	17.2	3.8	88.9	17	0	-2.4	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_3306	TC1753	159.7	73.5	155.4	120	-1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_48285	TC17530	7.3	2.2	80.4	52.6	0	0	-3.5	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_2880	TC17534	4.9	31.9	6.6	37.1	2.7	2.5	0	0	transport.phosphate	PHO1 (PHOSPHATE 1) mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains. Identical
MSGI1_3660	TC17538	25.3	25.1	118.6	26.1	0	-2.2	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_1721	TC1754	15.3	26.5	73.1	26.8	0	-1.4	-2.3	0	glycolysis.PPFK	phosphofructokinase family protein  similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT4G26270.1); similar to putative pyrophosphate-dependent phosphofructo-1-kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD86939.1); simil
MSGI1_9185	TC17571	8.2	11.1	32.9	28.6	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_10907	TC17575	16.5	78.2	15.2	64.6	2.2	2.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_9865	TC17576	166.6	334.8	220.5	234.5	1	0	0	0	protein.degradation.ubiquitin.E2	"UBC28; ubiquitin-protein ligase  similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT4G27960.2); similar to ubiquitin carrier-like protein [Arachis hypogaea] (GB:ABI84263.1); similar to ubiquitin conj"
MSGI1_26368	TC17577	36.2	39.5	26.3	54.1	0	1	0	0	protein.degradation.ubiquitin.E3.RING	zinc finger (C3HC4-type RING finger) family protein  similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G14250.1); similar to putative ubiquitin conjugating enzyme 7 interacting protein 4 [Oryza sativa (japonica cultivar-group)
MSGI1_7936	TC17581	8.3	5.6	48.4	2.4	0	-4.3	-2.5	0	misc.cytochrome P450	"CYP81D3 (cytochrome P450, family 81, subfamily D, polypeptide 3); oxygen binding member of CYP81D similar to CYP81D2 (cytochrome P450, family 81, subfamily D, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37360.1); similar to CYP81D8 (c"
MSGI1_7984	TC17589	6.8	34.3	8.4	22	2.3	0	0	0	protein.degradation.ubiquitin.E3.RING	zinc finger (C3HC4-type RING finger) family protein  Identical to RING-H2 finger protein ATL1L (ATL1L) [Arabidopsis Thaliana] (GB:Q6NQG7;GB:Q9M9C1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G49200.1);
MSGI1_966	TC1759	76.8	88.7	162.6	85.1	0	0	-1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_929	TC17595	1.7	6.6	94.3	4.4	0	-4.4	-5.8	0	amino acid metabolism.degradation.aspartate family.lysine	LKR (SACCHAROPINE DEHYDROGENASE)  Identical to Alpha-aminoadipic semialdehyde synthase (LKR/SDH) (cAt-LKR/SDH) [Includes: Lysine ketoglutarate reductase (EC 1.5.1.8) (LKR); Saccharopine dehydrogenase (EC 1.5.1.9) (SDH) (cAt-SDH)] (LKR/SDH) [Arabidopsis T
MSGI1_1144	TC17597	50.8	24.6	13.1	17.4	0	0	2	0	redox.thioredoxin	"ATPDIL1-4 (PDI-LIKE 1-4); thiol-disulfide exchange intermediate Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. similar to ATPDIL1-3 (PDI-LIKE 1-3), thiol-disulfide excha"
MSGI1_1144	TC17597	50.8	24.6	13.1	17.4	0	0	2	0	cell wall	"ATPDIL1-4 (PDI-LIKE 1-4); thiol-disulfide exchange intermediate Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. similar to ATPDIL1-3 (PDI-LIKE 1-3), thiol-disulfide excha"
MSGI1_3803	TC17603	39.1	42.8	104.2	21.6	0	-2.3	-1.4	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY40 (WRKY DNA-binding protein 40); transcription factor Pathogen-induced transcription factor. Binds W-box sequences  in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more suscept
MSGI1_1633	TC17608	34.9	1.4	33	7.3	-4.6	-2.2	0	0	cell wall.pectin*esterases.acetyl esterase	"pectinacetylesterase, putative  similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT5G26670.1); similar to Pectinacetylesterase [Medicago truncatula] (GB:ABD33181.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963"
MSGI1_13273	TC17616	37	26.7	97.1	18.5	0	-2.4	-1.4	0	amino acid metabolism.degradation.aspartate family.threonine	lactoylglutathione lyase family protein / glyoxalase I family protein  similar to lactoylglutathione lyase [Arabidopsis thaliana] (TAIR:AT1G15380.2); similar to Glyoxalase/bleomycin resistance protein/dioxygenase [Medicago truncatula] (GB:ABD28405.1); con
MSGI1_13273	TC17616	37	26.7	97.1	18.5	0	-2.4	-1.4	0	Biodegradation of Xenobiotics.lactoylglutathione lyase	lactoylglutathione lyase family protein / glyoxalase I family protein  similar to lactoylglutathione lyase [Arabidopsis thaliana] (TAIR:AT1G15380.2); similar to Glyoxalase/bleomycin resistance protein/dioxygenase [Medicago truncatula] (GB:ABD28405.1); con
MSGI1_7642	TC17617	38.4	14.7	22	25.2	-1.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_11447	TC17622	46.4	32.8	15.3	33.3	0	0	1.6	0	RNA.regulation of transcription.putative transcription regulator	FtsJ-like methyltransferase family protein  similar to FtsJ-like methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G01230.1); similar to FtsJ-like methyltransferase family protein [Musa acuminata] (GB:ABF69946.1); similar to Ribosomal RNA
MSGI1_11035	TC17629	30.2	70.3	40.4	68.5	1.2	0	0	0	cell.cycle	ROC3 (rotamase CyP 3); peptidyl-prolyl cis-trans isomerase Encodes cytosolic cyclophilin ROC3. Identical to Peptidyl-prolyl cis-trans isomerase CYP19-1 (EC 5.2.1.8) (PPIase CYP19-1) (Rotamase cyclophilin-3) (Cyclophilin of 19 kDa 1) (CYP19-1) [Arabidopsi
MSGI1_11035	TC17629	30.2	70.3	40.4	68.5	1.2	0	0	0	misc.misc2	ROC3 (rotamase CyP 3); peptidyl-prolyl cis-trans isomerase Encodes cytosolic cyclophilin ROC3. Identical to Peptidyl-prolyl cis-trans isomerase CYP19-1 (EC 5.2.1.8) (PPIase CYP19-1) (Rotamase cyclophilin-3) (Cyclophilin of 19 kDa 1) (CYP19-1) [Arabidopsi
MSGI1_6336	TC17636	14.7	19.3	58.8	38.9	0	0	-2	0	signalling.G-proteins	"ATGB2 (GTP-BINDING 2); GTP binding GTP-binding protein ATGB2 similar to AT-RAB2 (Arabidopsis Rab GTPase homolog B1c), GTP binding [Arabidopsis thaliana] (TAIR:AT4G17170.1); similar to small GTP-binding protein [Carica papaya] (GB:BAA88497.1); contains In"
MSGI1_3569	TC17655	45.6	92.4	238.3	296.6	1	0	-2.4	-1.7	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_3569	TC17655	45.6	92.4	238.3	296.6	1	0	-2.4	-1.7	development.unspecified	nodulin MtN3 family protein  similar to nodulin MtN3 family protein [Arabidopsis thaliana] (TAIR:AT4G25010.1); similar to N3 like protein [Medicago truncatula] (GB:CAC44123.1); contains InterPro domain MtN3 and saliva related transmembrane protein; (Inter
MSGI1_9458	TC17656	27.5	15.3	33.2	10.9	0	-1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_2564	TC1766	28	29.9	82.3	38.5	0	-1.1	-1.6	0	"misc.oxidases - copper, flavone etc."	flavin-containing monooxygenase family protein / FMO family protein  similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G21430.1); similar to Os12g0189500 [Oryza sativa (japonica cultivar-group)
MSGI1_2564	TC1766	28	29.9	82.3	38.5	0	-1.1	-1.6	0	secondary metabolism.sulfur-containing.glucosinolates	flavin-containing monooxygenase family protein / FMO family protein  similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G21430.1); similar to Os12g0189500 [Oryza sativa (japonica cultivar-group)
MSGI1_576	TC17665	6.6	30.2	7	13.1	2.2	0	0	0	transport.metal	"HMA2 (Heavy metal ATPase 2); cadmium-transporting ATPase encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc Identical to Putative cadmium/zinc-transporting ATPase 3 (EC 3.6.3.3) (EC 3.6.3.5) (HMA2) [Arabidopsis Thaliana] (GB:Q9SZW4"
MSGI1_8026	TC17680	53.8	17.3	13.3	11.4	-1.6	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_3900	TC17690	27	28.4	66.4	17	0	-2	-1.3	0	cell wall.precursor synthesis.UGE	UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1); UDP-glucose 4-epimerase/ protein dimerization Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate.
MSGI1_6536	TC17695	12.6	21.6	40.9	41	0	0	-1.7	0	secondary metabolism.phenylpropanoids	isochorismatase hydrolase family protein  similar to hypothetical protein [Plantago major] (GB:CAH59421.1); contains InterPro domain Isochorismatase hydrolase; (InterPro:IPR000868)
MSGI1_5453	TC17698	27.1	14.6	66.5	31.4	0	-1.1	-1.3	0	secondary metabolism.phenylpropanoids	"O-methyltransferase family 2 protein  similar to O-methyltransferase family 2 protein [Arabidopsis thaliana] (TAIR:AT4G35150.1); similar to O-methyltransferase, family 2 [Medicago truncatula] (GB:ABE89160.1); contains InterPro domain SAM (and some other"
MSGI1_9657	TC17705	4.3	17	30.1	18.3	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_26505	TC17716	21.4	10.7	4.5	10.2	0	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_4880	TC17719	9.2	43.5	18.8	33.4	2.2	0	0	0	transport.ABC transporters and multidrug resistance systems	"ABC transporter family protein  Identical to Multidrug resistance protein 13 (P-glycoprotein 15) (MDR13) [Arabidopsis Thaliana] (GB:Q9LHD1); similar to PGP18 (P-GLYCOPROTEIN 18), ATPase, coupled to transmembrane movement of substances [Arabidopsis thalia"
MSGI1_9069	TC17723	9.3	6.1	32.6	7.1	0	-2.2	-1.8	0	lipid metabolism.lipid degradation.lysophospholipases.phosphoinositide phospholipase C	"ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phosp"
MSGI1_9069	TC17723	9.3	6.1	32.6	7.1	0	-2.2	-1.8	0	signalling.phosphinositides.phosphoinositide phospholipase C	"ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phosp"
MSGI1_5359	TC17725	10.2	20.5	74.8	29.3	0	-1.4	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_69928	TC1773	6.2	13.5	0	0	0	0	0	4.8	RNA.regulation of transcription.MYB-related transcription factor family	myb family transcription factor  similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT2G38090.1); similar to MYB-like transcription factor DIVARICATA [Antirrhinum majus] (GB:AAL78741.1); contains InterPro domain Homeodomain-related;
MSGI1_19942	TC17731	145.4	153.5	66.3	101.8	0	0	1.1	0	protein.synthesis.misc ribososomal protein	RPL34 (RIBOSOMAL PROTEIN L34); structural constituent of ribosome putative 60S ribosomal protein L34 Identical to 60S ribosomal protein L34-2 (RPL34B) [Arabidopsis Thaliana] (GB:Q9FE65); similar to 60S ribosomal protein L34 (RPL34A) [Arabidopsis thaliana]
MSGI1_38927	TC17734	1.1	2.4	225	119	0	0	-7.7	-5.6	not assigned.unknown	not assigned.unknown
MSGI1_20137	TC17735	27.1	70	167.4	68.2	1.4	-1.3	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_5211	TC1778	216	392.7	467.5	322.8	0	0	-1.1	0	protein.synthesis.initiation	"eukaryotic translation initiation factor SUI1, putative  Identical to Protein translation factor SUI1 homolog 1 [Arabidopsis Thaliana] (GB:P41568;GB:Q9SLK5); similar to eukaryotic translation initiation factor SUI1, putative [Arabidopsis thaliana] (TAIR:"
MSGI1_14525	TC17781	38.9	11.7	17.3	33.9	-1.7	0	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_11322	TC17792	38.1	19.4	14.4	16.5	0	0	1.4	0	signalling.G-proteins	"AtRABG3a; GTP binding  similar to RAB7 (Ras-related protein 7), GTP binding [Arabidopsis thaliana] (TAIR:AT1G22740.1); similar to RAB7A [Lotus japonicus] (GB:CAA98168.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); co"
MSGI1_24667	TC17795	7.5	47.8	29.8	52.4	2.7	0	-2	0	hormone metabolism.auxin.induced-regulated-responsive-activated	dormancy/auxin associated protein-related  similar to dormancy/auxin associated family protein [Arabidopsis thaliana] (TAIR:AT1G56220.1); similar to auxin-repressed protein-like protein [Nicotiana tabacum] (GB:AAO21304.1); contains InterPro domain Dormanc
MSGI1_22237	TC178	11.5	15	0	0	0	0	4.5	4.9	not assigned.unknown	not assigned.unknown
MSGI1_13771	TC17807	20.4	64.8	50.6	65.7	1.7	0	-1.3	0	RNA.regulation of transcription.bZIP transcription factor family	"TGA4 (TGACG MOTIF-BINDING FACTOR 4); DNA binding / calmodulin binding / transcription factor Encodes a member of basic leucine zipper transcription gene family.  Nomenclature according to Xiang, et al. (1997). Identical to Transcription factor TGA4 (Ocs"
MSGI1_22030	TC17808	10.6	85.2	37.5	70.6	3	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_6637	TC17809	12.6	53	22.8	34.7	2.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_5148	TC1782	90.5	22.3	36.3	49.9	-2	0	1.3	-1.2	nucleotide metabolism.phosphotransfer and pyrophosphatases.nucleoside diphosphate kinase	"nucleoside diphosphate kinase 4 (NDK4)  Identical to Nucleoside diphosphate kinase IV, chloroplast/mitochondrial precursor (EC 2.7.4.6) (NDK IV) (NDP kinase IV) (NDPK IV) (Nucleoside diphosphate kinase 4) (NDK4) [Arabidopsis Thaliana] (GB:Q8LAH8;GB:Q9T0A"
MSGI1_21595	TC17824	117.6	34.3	55.4	78.8	-1.8	0	1.1	-1.2	protein.synthesis.mito/plastid ribosomal protein.plastid	"plastid-specific ribosomal protein-related plastid-specific ribosomal protein 6 precursor (Psrp-6) - like Identical to Plastid-specific 50S ribosomal protein 6, chloroplast precursor (PSRP- 6) (CL25) (PSRP6) [Arabidopsis Thaliana] (GB:Q9FKP0); similar to"
MSGI1_3405	TC17825	9.4	30.4	11.5	20.8	1.7	0	0	0	transport.phosphate	PHT5 (phosphate transporter 5); inorganic phosphate transporter/ phosphate transporter phosphate transporter Identical to Inorganic phosphate transporter 1-5 (AtPht1;5) (H(+)/Pi cotransporter) (PHT1-5) [Arabidopsis Thaliana] (GB:Q8GYF4;GB:O50040;GB:Q8S9I
MSGI1_14982	TC17833	1.9	27.3	16.9	24.2	3.8	0	-3.2	0	transport.ABC transporters and multidrug resistance systems	"ABC transporter family protein  Identical to Multidrug resistance protein 13 (P-glycoprotein 15) (MDR13) [Arabidopsis Thaliana] (GB:Q9LHD1); similar to PGP18 (P-GLYCOPROTEIN 18), ATPase, coupled to transmembrane movement of substances [Arabidopsis thalia"
MSGI1_9621	TC17836	4.5	29	1.6	7.6	2.7	0	0	1.9	not assigned.unknown	not assigned.unknown
MSGI1_15190	TC1785	78.6	56.4	26.7	67.6	0	1.3	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_20222	TC17858	8.5	33.6	3	18.5	2	2.6	0	0	cell wall	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G20530.1); similar to Protein kinase [Medicago truncatula] (GB:ABE83211.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contai
MSGI1_20222	TC17858	8.5	33.6	3	18.5	2	2.6	0	0	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G20530.1); similar to Protein kinase [Medicago truncatula] (GB:ABE83211.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contai
MSGI1_12661	TC1786	33	20.6	17.6	77.6	0	2.1	0	-1.9	cell wall	glycosyl hydrolase family protein 17  similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT5G08000.1); similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT5G61130.1); similar to putative glycosyl hydrol
MSGI1_12661	TC1786	33	20.6	17.6	77.6	0	2.1	0	-1.9	"misc.beta 1,3 glucan hydrolases"	glycosyl hydrolase family protein 17  similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT5G08000.1); similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT5G61130.1); similar to putative glycosyl hydrol
MSGI1_8009	TC17864	124.3	69.3	35	53.7	0	0	1.8	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S10 (RPS10C)  Identical to 40S ribosomal protein S10-3 (RPS10C) [Arabidopsis Thaliana] (GB:Q9LTF2;GB:Q8VZ66); similar to 40S ribosomal protein S10 (RPS10A) [Arabidopsis thaliana] (TAIR:AT4G25740.1); similar to 40S ribosomal protein
MSGI1_9521	TC17868	7.5	18.8	36.3	13.1	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_8934	TC1787	5.5	16.6	27.7	26.6	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_21256	TC17870	21.3	151.4	93.5	10.4	2.8	-3.2	-2.1	3.9	RNA.regulation of transcription.C3H zinc finger family	zinc finger (CCCH-type) family protein  similar to CZF1/ZFAR1 [Arabidopsis thaliana] (TAIR:AT2G40140.2); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro
MSGI1_14477	TC17878	76.9	33	29.1	28.2	-1.2	0	1.4	0	lipid metabolism.FA synthesis and FA elongation.ACP protein	"acyl carrier family protein / ACP family protein  similar to mtACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1), acyl carrier [Arabidopsis thaliana] (TAIR:AT2G44620.1); similar to Acyl carrier protein (ACP) [Medicago truncatula] (GB:ABE78017.1); contains Int"
MSGI1_4558	TC17898	8.1	17.9	63.5	13.8	0	-2.2	-3	0	cell wall.precursor synthesis.UGE	UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5); UDP-glucose 4-epimerase/ protein dimerization Encodes a protein with UDP-D-glucose 4-epimerase activity. Identical to Probable UDP-glucose 4-epimerase At4g10960 (EC 5.1.3.2) (Galactowaldenase) (UDP-gala
MSGI1_22765	TC179	11.8	18.9	0.1	0.3	0	0	6.9	6	not assigned.unknown	not assigned.unknown
MSGI1_8850	TC17908	88.1	43.8	21.2	42.1	-1	0	2.1	0	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L8 (RPL8C)  Identical to 60S ribosomal protein L8-3 (RPL8C) [Arabidopsis Thaliana] (GB:Q42064;GB:Q7DLL7); similar to EMB2296 (EMBRYO DEFECTIVE 2296), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G18020.1); simi"
MSGI1_16964	TC17915	52.7	22.6	22.5	17.2	-1.2	0	1.2	0	cell wall	"glycosyl hydrolase family 17 protein  similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT4G34480.1); similar to beta-1,3-glucanase-like protein [Olea europaea] (GB:AAK58515.1); contains InterPro domain X8; (InterPro:IPR012946)"
MSGI1_10737	TC17928	4.1	9.3	38.2	7.3	0	-2.4	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_19427	TC17929	57.3	224.4	178.8	605.9	2	1.8	-1.6	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_3265	TC17931	4.6	7.8	78.6	13.1	0	-2.6	-4.1	0	transport.amino acids	amino acid transporter family protein  similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT2G39130.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABE77592.1); contains InterPro domain Amino acid/p
MSGI1_19941	TC17936	5.6	4.4	336.7	1.4	0	-7.9	-5.9	0	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase	"NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE3) Encodes  9-<i>cis</i>-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chl"
MSGI1_2039	TC17938	11.6	33.5	24	25	1.5	0	0	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_32722	TC17940	19.5	45.7	10.5	14.1	1.2	0	0	1.7	protein.postranslational modification	ATMYC2 (JASMONATE INSENSITIVE 1); DNA binding / transcription factor Encodes a 68 kD MYC-related transcriptional activator with a typical DNA binding domain of a basic region helix-loop-helix leucine zipper motif. Its transcription is induced by dehydrat
MSGI1_32722	TC17940	19.5	45.7	10.5	14.1	1.2	0	0	1.7	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	ATMYC2 (JASMONATE INSENSITIVE 1); DNA binding / transcription factor Encodes a 68 kD MYC-related transcriptional activator with a typical DNA binding domain of a basic region helix-loop-helix leucine zipper motif. Its transcription is induced by dehydrat
MSGI1_26298	TC17948	6.2	14.4	15.3	101.3	0	2.7	0	-2.8	major CHO metabolism.synthesis.starch.AGPase	"APL4 (large subunit of AGP 4); glucose-1-phosphate adenylyltransferase Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role wh"
MSGI1_9223	TC17952	13.2	40.5	28.4	23.9	1.6	0	0	0	RNA.regulation of transcription.MYB domain transcription factor family	"MYB85 (myb domain protein 85); DNA binding / transcription factor Encodes a putative transcription factor (MYB85). similar to MYB43 (myb domain protein 43), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G16600.1); similar to myb-rela"
MSGI1_9223	TC17952	13.2	40.5	28.4	23.9	1.6	0	0	0	cell wall	"MYB85 (myb domain protein 85); DNA binding / transcription factor Encodes a putative transcription factor (MYB85). similar to MYB43 (myb domain protein 43), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G16600.1); similar to myb-rela"
MSGI1_5548	TC17971	64.4	1.8	855.3	7.9	-5.2	-6.8	-3.7	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_5548	TC17971	64.4	1.8	855.3	7.9	-5.2	-6.8	-3.7	0	development.unspecified	MTN3 (ARABIDOPSIS HOMOLOG OF MEDICAGO TRUNCATULA MTN3) homolog of the Medicago nodulin MTN3 similar to nodulin MtN3 family protein [Arabidopsis thaliana] (TAIR:AT3G48740.1); similar to MtN3 [Medicago truncatula] (GB:CAA69976.1); similar to Os11g0508600 [O
MSGI1_7270	TC17994	8.3	19.7	32.7	7.8	0	-2.1	-2	0	protein.degradation.ubiquitin.E3.RING	"protein binding / zinc ion binding  similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G21500.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE79651.1); contains InterPro domain Zinc finger, RING-type; (InterP"
MSGI1_9334	TC18	45	9	21	18.5	-2.3	0	0	0	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_40069	TC180	39.1	56.4	0.5	0	0	0	6.3	6.8	not assigned.unknown	not assigned.unknown
MSGI1_15462	TC18008	54.6	26.3	14	21.2	0	0	2	0	misc.plastocyanin-like	plastocyanin-like domain-containing protein  Identical to Lamin-like protein precursor [Arabidopsis Thaliana] (GB:Q39131;GB:Q8H7E7); similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G12880.1); similar to lamin [Brassi
MSGI1_15462	TC18008	54.6	26.3	14	21.2	0	0	2	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_29979	TC18009	32.3	51.3	60.2	18.9	0	-1.7	0	1.4	not assigned.unknown	not assigned.unknown
MSGI1_4220	TC18021	41.7	13.8	100.7	51.9	-1.6	0	-1.3	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_22997	TC18026	14.1	9.1	0.2	0.1	0	0	6.1	0	not assigned.unknown	not assigned.unknown
MSGI1_15306	TC18031	65	0.3	23	1.1	-7.8	-4.4	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_9912	TC18038	27.9	19.5	48.8	19.4	0	-1.3	0	0	misc.GCN5-related N-acetyltransferase	"GCN5-related N-acetyltransferase (GNAT) family protein  similar to GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] (TAIR:AT2G39030.1); similar to GCN5-related N-acetyltransferase, putative, expressed [Oryza sativa (japonica"
MSGI1_9505	TC1804	6.8	15.9	49.5	29.8	0	0	-2.9	0	secondary metabolism.N misc.alkaloid-like	YLS2 (yellow-leaf-specific gene 2); strictosidine synthase strictosidine synthase-like protein similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G51450.1); similar to strictosidine synthase family protein [Arabidopsis thalia
MSGI1_9505	TC1804	6.8	15.9	49.5	29.8	0	0	-2.9	0	cell wall	YLS2 (yellow-leaf-specific gene 2); strictosidine synthase strictosidine synthase-like protein similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G51450.1); similar to strictosidine synthase family protein [Arabidopsis thalia
MSGI1_13808	TC18041	34.6	23	8.4	13.4	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_4385	TC1805	19.2	36.5	66.4	31.6	0	-1.1	-1.8	0	misc.acid and other phosphatases	"ATPAP18/PAP18 (purple acid phosphatase 18); acid phosphatase/ protein serine/threonine phosphatase  similar to ATPAP22/PAP22 (purple acid phosphatase 22), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT3G52820.1); s"
MSGI1_4385	TC1805	19.2	36.5	66.4	31.6	0	-1.1	-1.8	0	cell wall	"ATPAP18/PAP18 (purple acid phosphatase 18); acid phosphatase/ protein serine/threonine phosphatase  similar to ATPAP22/PAP22 (purple acid phosphatase 22), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT3G52820.1); s"
MSGI1_17844	TC18050	63.5	46.7	22	44.6	0	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_12425	TC18051	3.3	4.1	18.9	16	0	0	-2.5	0	stress.biotic	"disease resistance protein (CC-NBS-LRR class), putative  Identical to Probable disease resistance protein At5g66900 [Arabidopsis Thaliana] (GB:Q9FKZ1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G66"
MSGI1_16071	TC18059	5.9	9.3	31.3	59.7	0	0	-2.4	-2.7	protein.degradation.serine protease	"SCPL31 (serine carboxypeptidase-like 31); serine carboxypeptidase  similar to SCPL30 (serine carboxypeptidase-like 30), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT4G15100.1); similar to serine carboxypeptidase S10 family protein [Arabidopsis"
MSGI1_26148	TC18061	6.7	48.7	29.8	54	2.9	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_20261	TC18068	60.8	81.4	39.5	29.8	0	0	0	1.4	not assigned.unknown	not assigned.unknown
MSGI1_6535	TC1807	46.5	28.8	40.4	65.8	0	0	0	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_10366	TC18072	54	21.8	18	11.6	-1.3	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_7162	TC18079	46.1	18.5	28.4	24.1	-1.3	0	0	0	cell.organisation	"ANNAT2 (ANNEXIN ARABIDOPSIS 2); calcium ion binding / calcium-dependent phospholipid binding Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane.  They may be invo"
MSGI1_15849	TC18105	13	33.9	23.1	6.9	0	0	0	2.3	not assigned.unknown	not assigned.unknown
MSGI1_14981	TC18107	18.5	18.4	3.3	3.1	0	0	2.5	2.6	not assigned.unknown	not assigned.unknown
MSGI1_8716	TC18108	6.8	9.6	244.1	2.7	0	-6.5	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_10430	TC18109	7.6	10.9	282.6	3.7	0	-6.3	-5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_12036	TC1811	49.8	50.1	90.8	27.8	0	-1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_13233	TC18113	158.3	144.5	26.2	72.6	0	1.5	2.6	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_13233	TC18113	158.3	144.5	26.2	72.6	0	1.5	2.6	0	misc.plastocyanin-like	ARPN (PLANTACYANIN); copper ion binding Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil. Identical to Putative basic blue protein precursor (Plantacyanin)
MSGI1_14940	TC18119	1.8	25.9	40.1	9.9	3.8	-2	-4.5	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_14940	TC18119	1.8	25.9	40.1	9.9	3.8	-2	-4.5	0	hormone metabolism.ethylene.induced-regulated-responsive-activated	"universal stress protein (USP) family protein  similar to ethylene-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G09740.1); similar to universal stress protein family [Medicago truncatula] (GB:ABE78101.1); contains InterPro domain Universa"
MSGI1_4851	TC18127	8.5	12.1	43.5	17.1	0	0	-2.4	0	redox.glutaredoxins	glutaredoxin family protein  similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G10630.1); similar to Os01g0235900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042526.1); similar to hypothetical protein MtrDRAFT_AC139526g15v1 [Me
MSGI1_1525	TC1816	22.6	18.6	58.3	21.8	0	-1.4	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_18363	TC18160	51.3	15.8	23.2	16.6	-1.7	0	1.1	0	RNA.regulation of transcription.unclassified	similar to SGR5 (SHOOT GRAVITROPISM 5) [Arabidopsis thaliana] (TAIR:AT2G01940.3); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD23182.1)
MSGI1_6506	TC18184	6.4	59.8	36.1	3.3	3.2	-3.5	-2.5	4.2	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. simi"
MSGI1_18431	TC18186	13.8	1.1	20.9	2.2	-3.6	-3.2	0	0	lipid metabolism.FA synthesis and FA elongation.long chain fatty acid CoA ligase	"LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2) Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. similar to long-chain-fatty-acid--CoA ligase, putative / long-"
MSGI1_17109	TC18191	28.5	7.8	21.9	14.5	-1.9	0	0	0	PS.lightreaction.photosystem I.LHC-I	"LHCA6 (Photosystem I light harvesting complex gene 6); chlorophyll binding PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA, similar to LHCA2 (Photosystem I light harvesting complex gene 2), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT3G"
MSGI1_20221	TC18198	4	12.5	43.6	26.5	0	0	-3.4	0	secondary metabolism.N misc.alkaloid-like	"strictosidine synthase family protein  similar to YLS2 (yellow-leaf-specific gene 2), strictosidine synthase [Arabidopsis thaliana] (TAIR:AT3G51430.1); similar to mucin-like protein [Oryza sativa] (GB:AAG13594.1); contains InterPro domain Strictosidine s"
MSGI1_14237	TC18200	24.8	55.8	86.7	65.8	1.2	0	-1.8	0	stress.abiotic.unspecified	RD2 (RESPONSIVE TO DESSICATION 2) Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment. similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT
MSGI1_4360	TC18202	8.3	7.8	41.9	10.4	0	-2	-2.3	0	secondary metabolism.isoprenoids.tocopherol biosynthesis.hydroxyphenylpyruvate dioxygenase	"PDS1 (PHYTOENE DESATURATION 1) Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants. Identical to 4-hydroxyphenylpyruv"
MSGI1_4360	TC18202	8.3	7.8	41.9	10.4	0	-2	-2.3	0	amino acid metabolism.degradation.aromatic aa.tyrosine	"PDS1 (PHYTOENE DESATURATION 1) Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants. Identical to 4-hydroxyphenylpyruv"
MSGI1_22832	TC18203	285	5.5	112.6	22.3	-5.7	-2.3	1.3	-2	hormone metabolism.gibberelin.induced-regulated-responsive-activated	"GASA4 (GAST1 PROTEIN HOMOLOG 4) gibberellin-regulated (GASA4) Identical to Gibberellin-regulated protein 4 precursor (GASA4) [Arabidopsis Thaliana] (GB:P46690;GB:O49593); similar to gibberellin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT"
MSGI1_16409	TC18206	4.4	6.7	24.2	21.7	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_9863	TC18212	11.1	36.5	42.2	40.8	1.7	0	-1.9	0	RNA.regulation of transcription.bZIP transcription factor family	"BZO2H2 (basic leucine zipper O2 homolog 2); DNA binding / transcription factor Encodes bZIP protein BZO2H2. similar to BZO2H1 (basic leucine zipper O2 homolog 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G02640.2); similar to bZ"
MSGI1_23161	TC18218	8.3	41.1	18.5	31.7	2.3	0	0	0	transport.nucleotides	"PUP1 (PURINE PERMEASE 1); purine transporter Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation. similar to ATPUP2"
MSGI1_39931	TC18219	61.1	29	51.7	50.1	-1.1	0	0	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L10 (RPL10B)  Identical to 60S ribosomal protein L10-2 (Wilms tumor suppressor protein homolog) (RPL10B) [Arabidopsis Thaliana] (GB:Q08770;GB:Q42327;GB:Q9ZVG7); similar to 60S ribosomal protein L10 (RPL10A) / Wilm's tumor suppressor
MSGI1_8271	TC18229	11.4	17.8	10.4	2.2	0	0	0	3	signalling.calcium	calmodulin-binding protein  similar to calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G18750.2); similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT4G25800.2); similar to Os02g0562300 [Oryza sativa (japonica cultivar-group)] (GB:NP_0
MSGI1_6353	TC18234	9.4	13.9	79.8	18.1	0	-2.1	-3.1	0	RNA.regulation of transcription.unclassified	SEN1 (DARK INDUCIBLE 1) Senescence-associated gene that is strongly induced by phosphate starvation.  Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway medi
MSGI1_6353	TC18234	9.4	13.9	79.8	18.1	0	-2.1	-3.1	0	development.unspecified	SEN1 (DARK INDUCIBLE 1) Senescence-associated gene that is strongly induced by phosphate starvation.  Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway medi
MSGI1_8085	TC18237	36.5	16.7	11.8	18.6	0	0	1.6	0	minor CHO metabolism.others	"AtkdsA1 (Arabidopsis thaliana KDO-8-phosphate synthase A1); 3-deoxy-8-phosphooctulonate synthase Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall r"
MSGI1_8849	TC1824	19.4	77.5	135.6	31	2	-2.1	-2.8	1.3	major CHO metabolism.degradation.starch.starch cleavage	"BMY3 (beta-amylase 3); beta-amylase putative beta-amylase BMY3 (BMY3) similar to CT-BMY (BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to beta-amylase [Glycine max] (GB:CAI39245.1); contains InterPro domain Glycoside hy"
MSGI1_20809	TC18250	8.5	13	46.3	11.1	0	-2.1	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_13151	TC18264	22.6	76.3	19.2	74.9	1.8	2	0	0	cell wall	GASA5 (GAST1 PROTEIN HOMOLOG 5)  similar to gibberellin-regulated family protein [Arabidopsis thaliana] (TAIR:AT2G30810.1); similar to GASA5 (GB:AAA98520.1); contains InterPro domain Gibberellin regulated protein; (InterPro:IPR003854)
MSGI1_13151	TC18264	22.6	76.3	19.2	74.9	1.8	2	0	0	hormone metabolism.gibberelin.induced-regulated-responsive-activated	GASA5 (GAST1 PROTEIN HOMOLOG 5)  similar to gibberellin-regulated family protein [Arabidopsis thaliana] (TAIR:AT2G30810.1); similar to GASA5 (GB:AAA98520.1); contains InterPro domain Gibberellin regulated protein; (InterPro:IPR003854)
MSGI1_21820	TC18279	25.9	19.5	49.8	52.3	0	0	0	-1.4	RNA.transcription	"DNA-directed RNA polymerase II, putative (RPB10)  Identical to DNA-directed RNA polymerase II 8.2 kDa polypeptide (EC 2.7.7.6) (RPB10) (RP10) (ABC10) [Arabidopsis Thaliana] (GB:Q9SYA6); similar to DNA-directed RNA polymerase II, putative [Arabidopsis tha"
MSGI1_1856	TC1828	6	19	31.1	23	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_56545	TC18292	11	17.1	51.5	25.9	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_306	TC183	329.5	709.9	201.9	395.6	1.1	1	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_306	TC183	329.5	709.9	201.9	395.6	1.1	1	0	0	cell wall	"SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups Encodes a protein with sucrose synthase activity (SUS4). similar to SUS1 (SUCROSE SYNTHASE 1), UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TA"
MSGI1_306	TC183	329.5	709.9	201.9	395.6	1.1	1	0	0	major CHO metabolism.degradation.sucrose.Susy	"SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups Encodes a protein with sucrose synthase activity (SUS4). similar to SUS1 (SUCROSE SYNTHASE 1), UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TA"
MSGI1_9895	TC18301	18.4	25.7	33.5	4.4	0	-2.9	0	2.5	misc.UDP glucosyl and glucoronyl transferases	"GATL9/LGT8 (Galacturonosyltransferase-like 9); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with  putative galacturonosyltransferase activity."
MSGI1_9895	TC18301	18.4	25.7	33.5	4.4	0	-2.9	0	2.5	cell wall	"GATL9/LGT8 (Galacturonosyltransferase-like 9); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with  putative galacturonosyltransferase activity."
MSGI1_48922	TC18302	62.3	38.5	122.1	28.9	0	-2.1	0	0	misc.UDP glucosyl and glucoronyl transferases	"GATL8/LGT9 (Galacturonosyltransferase-like 8); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with  putative galacturonosyltransferase activity."
MSGI1_2535	TC18304	3.6	9.5	115.4	2.5	0	-5.5	-5	0	protein.postranslational modification	"CIPK25 (CBL-INTERACTING PROTEIN KINASE 25); kinase member of AtCIPKs similar to CIPK5 (CBL-INTERACTING PROTEIN KINASE 5), kinase [Arabidopsis thaliana] (TAIR:AT5G10930.1); similar to CBL-interacting protein kinase 6 [Populus trichocarpa] (GB:ABJ91234.1);"
MSGI1_25898	TC18321	1.8	2.3	45.9	10.1	0	-2.2	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_15226	TC18322	11.8	57.7	31.2	26.1	2.3	0	0	1.1	not assigned.unknown	not assigned.unknown
MSGI1_13232	TC18324	4.2	5.2	24.9	5.5	0	-2.2	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_23158	TC18334	4.2	5.7	94.4	10.4	0	-3.2	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_5628	TC18340	186.6	229.3	0.4	0.2	0	0	8.9	10.2	not assigned.unknown	not assigned.unknown
MSGI1_14821	TC18347	32.5	7.7	9.5	5.4	-2.1	0	1.8	0	cell wall	"peroxidase, putative  Identical to Peroxidase 54 precursor (EC 1.11.1.7) (Atperox P54) (ATP29a) (PER54) [Arabidopsis Thaliana] (GB:Q9FG34;GB:P93729); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G06720.1); similar to Peroxidase A2 (GB:"
MSGI1_14821	TC18347	32.5	7.7	9.5	5.4	-2.1	0	1.8	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 54 precursor (EC 1.11.1.7) (Atperox P54) (ATP29a) (PER54) [Arabidopsis Thaliana] (GB:Q9FG34;GB:P93729); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G06720.1); similar to Peroxidase A2 (GB:"
MSGI1_11630	TC18366	39.2	8	12.4	6.3	-2.3	0	1.7	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 39 precursor (EC 1.11.1.7) (Atperox P39) (ATP19a) (PER39) [Arabidopsis Thaliana] (GB:Q9SUT2;GB:Q96508); similar to RCI3 (RARE COLD INDUCIBLE GENE 3), peroxidase [Arabidopsis thaliana] (TAIR:AT1G05260.1); simi"
MSGI1_11630	TC18366	39.2	8	12.4	6.3	-2.3	0	1.7	0	cell wall	"peroxidase, putative  Identical to Peroxidase 39 precursor (EC 1.11.1.7) (Atperox P39) (ATP19a) (PER39) [Arabidopsis Thaliana] (GB:Q9SUT2;GB:Q96508); similar to RCI3 (RARE COLD INDUCIBLE GENE 3), peroxidase [Arabidopsis thaliana] (TAIR:AT1G05260.1); simi"
MSGI1_3884	TC18371	19.3	3.1	7.3	3.5	-2.6	0	0	0	signalling.calcium	calmodulin-binding protein  similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT4G31000.1); similar to Os02g0562300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047151.1); similar to calmodulin-binding protein (GB:AAB37246.1); simil
MSGI1_36357	TC184	79.5	182.5	132.9	91.8	1.2	0	0	0	cell wall	"SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups Encodes a protein with sucrose synthase activity (SUS4). similar to SUS1 (SUCROSE SYNTHASE 1), UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TA"
MSGI1_36357	TC184	79.5	182.5	132.9	91.8	1.2	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_36357	TC184	79.5	182.5	132.9	91.8	1.2	0	0	0	major CHO metabolism.degradation.sucrose.Susy	"SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups Encodes a protein with sucrose synthase activity (SUS4). similar to SUS1 (SUCROSE SYNTHASE 1), UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TA"
MSGI1_2424	TC1840	10.1	33.8	39.1	26.9	1.7	0	-2	0	transport.unspecified cations	"equilibrative nucleoside transporter, putative (ENT8)  similar to ENT1,AT (EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1), nucleoside transporter [Arabidopsis thaliana] (TAIR:AT1G70330.1); similar to equilibrative nucleoside transporter 1 [Oryza sativa (japonic"
MSGI1_827	TC18407	3.4	4	24.2	17.8	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_17107	TC18414	9.1	40.7	52.4	68.6	2.2	0	-2.5	0	cell wall	MYB111 (myb domain protein 111); DNA binding / transcription factor Encodes a putative transcription factor (MYB48). Identical to Transcription factor MYB48 (Myb-related protein 48) (AtMYB48) (MYB48) [Arabidopsis Thaliana] (GB:Q9LX82;GB:Q4JL82;GB:Q67YJ3)
MSGI1_17107	TC18414	9.1	40.7	52.4	68.6	2.2	0	-2.5	0	RNA.regulation of transcription.MYB domain transcription factor family	MYB111 (myb domain protein 111); DNA binding / transcription factor Encodes a putative transcription factor (MYB48). Identical to Transcription factor MYB48 (Myb-related protein 48) (AtMYB48) (MYB48) [Arabidopsis Thaliana] (GB:Q9LX82;GB:Q4JL82;GB:Q67YJ3)
MSGI1_37107	TC18415	52.1	48.1	17.5	36	0	0	1.6	0	cell. vesicle transport	"ATVAMP712 (Arabidopsis thaliana vesicle-associated membrane protein 712) Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family. Identical to Vesicle-associated membrane protein 712 (AtVAMP712) (VAMP712) [Arabidopsis Thaliana] (GB:Q9SIQ9); similar"
MSGI1_16014	TC18419	26.8	7.7	10.5	2.8	-1.8	0	0	0	cell wall	"glycosyl hydrolase family 17 protein  similar to hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT4G26830.1); similar to elicitor inducible beta-1,3-glucanase NtEIG-E76 [Nicotiana tabacum] (GB:BAB17320.1); similar to beta-1,3-gl"
MSGI1_8373	TC18431	87.3	47.4	30	45.7	0	0	1.5	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S8 (RPS8B)  Identical to 40S ribosomal protein S8-2 (RPS8B) [Arabidopsis Thaliana] (GB:Q9FIF3); similar to 40S ribosomal protein S8 (RPS8A) [Arabidopsis thaliana] (TAIR:AT5G20290.1); similar to ribosomal protein S8 [Oryza sativa (jap
MSGI1_3729	TC18436	28.3	68	11	47	1.3	2.1	0	0	cell wall.precursor synthesis.UGE	UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1); UDP-glucose 4-epimerase/ protein dimerization Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate.
MSGI1_12543	TC18437	36.5	11.3	20	20.9	-1.7	0	0	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	"photosystem II reaction centre W (PsbW) family protein Similar to PsbW subunit of photosystem II. Identical to Photosystem II reaction center PSB28 protein, chloroplast precursor (Photosystem II protein W-like) (PSB28) [Arabidopsis Thaliana] (GB:Q8W0Y8;G"
MSGI1_10107	TC18440	19.1	30.4	15	37.7	0	1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_1968	TC18462	136.9	175.7	110.6	224.7	0	1	0	0	redox.ascorbate and glutathione.ascorbate	"VTC2 (VITAMIN C DEFECTIVE 2) a gene encoding a novel protein is involved in ascorbate biosynthesis. recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxan"
MSGI1_12397	TC18467	5.3	43.5	29	5.3	3	-2.5	-2.5	3	not assigned.unknown	not assigned.unknown
MSGI1_37729	TC18471	46.2	19.6	20.3	19	-1.2	0	1.2	0	nucleotide metabolism.degradation	cytidine/deoxycytidylate deaminase family protein  similar to cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana] (TAIR:AT3G05300.1); similar to deoxycytidine deaminase [Brassica oleracea] (GB:AAL67435.1); contains InterPro domain CM
MSGI1_2852	TC18485	9.5	12	7.1	28.9	0	2	0	0	transport.Major Intrinsic Proteins.NIP	NIP6;1 (NOD26-like intrinsic protein 6;1); water channel Similar to gb:D17443 major intrinsic protein from Oryza sativa Identical to Aquaporin NIP6.1 (NOD26-like intrinsic protein 6.1) (NIP6.1) [Arabidopsis Thaliana] (GB:Q9SAI4;GB:Q5PP68); similar to NIP
MSGI1_2852	TC18485	9.5	12	7.1	28.9	0	2	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_2852	TC18485	9.5	12	7.1	28.9	0	2	0	0	cell wall	NIP6;1 (NOD26-like intrinsic protein 6;1); water channel Similar to gb:D17443 major intrinsic protein from Oryza sativa Identical to Aquaporin NIP6.1 (NOD26-like intrinsic protein 6.1) (NIP6.1) [Arabidopsis Thaliana] (GB:Q9SAI4;GB:Q5PP68); similar to NIP
MSGI1_31560	TC18486	15.5	28.1	8.4	31.5	0	1.9	0	0	signalling.receptor kinases.leucine rich repeat III	TMKL1 (TRANSMEMBRANE KINASE-LIKE 1); ATP binding / kinase/ protein serine/threonine kinase member of Receptor kinase-like protein family Identical to Putative kinase-like protein TMKL1 precursor (TMKL1) [Arabidopsis Thaliana] (GB:P33543); similar to IMK2
MSGI1_18495	TC18496	206.5	109.5	83.8	111.3	0	0	1.3	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L36 (RPL36C)  Identical to 60S ribosomal protein L36-3 (RPL36C) [Arabidopsis Thaliana] (GB:Q9LZ57); similar to 60S ribosomal protein L36 (RPL36B) [Arabidopsis thaliana] (TAIR:AT3G53740.4); similar to ribosomal protein L36 [Triticum a
MSGI1_14086	TC18497	4.4	27.7	46.9	10.6	2.7	-2.1	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_286	TC185	352.1	801.5	440	450.8	1.2	0	0	0	major CHO metabolism.degradation.sucrose.Susy	"SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups Encodes a protein with sucrose synthase activity (SUS4). similar to SUS1 (SUCROSE SYNTHASE 1), UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TA"
MSGI1_286	TC185	352.1	801.5	440	450.8	1.2	0	0	0	cell wall	"SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups Encodes a protein with sucrose synthase activity (SUS4). similar to SUS1 (SUCROSE SYNTHASE 1), UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TA"
MSGI1_286	TC185	352.1	801.5	440	450.8	1.2	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_25101	TC18508	14.2	21.3	33.8	6.4	0	-2.4	0	0	stress.biotic	glycosyl hydrolase family 81 protein  similar to glycosyl hydrolase family 81 protein [Arabidopsis thaliana] (TAIR:AT1G18310.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96863.1); similar to beta-glucan-binding protein 4 [Medicago truncatu
MSGI1_24349	TC18510	61.5	17.5	44	20.6	-1.8	0	0	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1); lipid binding encodes a putative apoplastic lipid transfer protein that is involved in systemic acquired resistance. Mutants in this gene exhibit wild-type local resistance to avirulent and virulent Pseudomonas s
MSGI1_15974	TC18512	40.6	1.9	11.5	17.6	-4.4	0	1.8	-3.2	cell wall.degradation.pectate lyases and polygalacturonases	"PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding polygalacturonase inhibiting protein 1 (PGIP1) mRNA, Identical to Polygalacturonase inhibitor 1 precursor (Polygalacturonase-inhibiting protein) (PGIP-1) (PGIP1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_5698	TC18518	5.4	5.9	104.1	3.2	0	-5	-4.3	0	not assigned.unknown	not assigned.unknown
MSGI1_23754	TC18528	18.6	32.2	68.2	60.2	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_20470	TC18533	7.2	10.9	61.9	8.4	0	-2.9	-3.1	0	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	"protein phosphatase 2C, putative / PP2C, putative  similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT1G07430.1); similar to protein phosphatase 2C [Nicotiana tabacum] (GB:CAC10358.1); contains InterPro domain Pro"
MSGI1_12395	TC18534	10	19.7	49.9	14.3	0	-1.8	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_3753	TC18537	4.2	20.9	17.3	23.1	2.3	0	0	0	transport.potassium	SKOR (stelar K+ outward rectifier); cyclic nucleotide binding / outward rectifier potassium channel member of Stelar K+ outward rectifying channel (SKOR) family. Mediates the delivery of K+ from stelar cells to the xylem in the roots towards the shoot. m
MSGI1_13191	TC18542	45.8	15.8	12.8	9.3	-1.5	0	1.8	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_13191	TC18542	45.8	15.8	12.8	9.3	-1.5	0	1.8	0	misc.plastocyanin-like	plastocyanin-like domain-containing protein  Identical to Lamin-like protein precursor [Arabidopsis Thaliana] (GB:Q39131;GB:Q8H7E7); similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G12880.1); similar to lamin [Brassi
MSGI1_32053	TC18545	28.5	28.3	5.1	20.8	0	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_8129	TC18549	21.4	1.6	26.6	0.5	-3.7	-5.7	0	0	"metal handling.binding, chelation and storage"	copper-binding family protein  similar to ATFP3 (Arabidopsis thaliana farnesylated protein 3) [Arabidopsis thaliana] (TAIR:AT5G63530.2); similar to PPAK motif; Heavy metal transport/detoxification protein [Medicago truncatula] (GB:ABE84491.1); contains In
MSGI1_10516	TC18554	33.7	10.4	33.8	23.4	-1.7	0	0	0	protein.folding	"immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein  Identical to Probable FKBP-type peptidyl-prolyl cis-trans isomerase 2, chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) [Arabidopsis Thaliana] (GB:O22870;GB:Q940C0); simil"
MSGI1_5852	TC18568	14.2	61.5	12.8	26.5	2.1	0	0	1.2	not assigned.unknown	not assigned.unknown
MSGI1_14444	TC18574	175.6	95	57.3	99.8	0	0	1.6	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S26 (RPS26C)  Identical to 40S ribosomal protein S26-3 (RPS26C) [Arabidopsis Thaliana] (GB:Q9LYK9); similar to 40S ribosomal protein S26 (RPS26B) [Arabidopsis thaliana] (TAIR:AT2G40590.1); similar to ribosomal protein S26 [Pisum sat
MSGI1_16914	TC18584	51.4	14.1	10.4	9.1	-1.9	0	2.3	0	stress.abiotic.heat	"DNAJ heat shock N-terminal domain-containing protein  similar to DNAJ heat shock N-terminal domain-containing protein (J11) [Arabidopsis thaliana] (TAIR:AT4G36040.1); similar to DNAJ heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT2G17880.1);"
MSGI1_16316	TC18613	12.9	4.4	146.7	53.6	0	-1.5	-3.5	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_20469	TC18631	8.9	0.5	98.8	3.7	0	-4.7	-3.5	0	transporter.sugars	"ATINT2 (INOSITOL TRANSPORTER 2); carbohydrate transporter/ sugar porter  Identical to Probable inositol transporter 2 (INT2) [Arabidopsis Thaliana] (GB:Q9C757); similar to ATINT3 (INOSITOL TRANSPORTER 3), carbohydrate transporter/ sugar porter [Arabidops"
MSGI1_30898	TC18632	43.1	21.3	16.5	26.2	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_11927	TC18634	34.7	91.2	15	57.8	1.4	1.9	0	0	cell wall	phosphate-responsive 1 family protein  similar to phosphate-responsive 1 family protein [Arabidopsis thaliana] (TAIR:AT2G17230.1); similar to unknown [Sorghum bicolor] (GB:AAQ06267.1); contains InterPro domain Phosphate-induced protein 1 conserved region;
MSGI1_37398	TC18635	36.2	16.2	8.2	14.1	0	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_10963	TC18639	48.2	26	19.2	21.3	0	0	1.3	0	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L23A (RPL23aB)  Identical to 60S ribosomal protein L23a-2 (RPL23AB) [Arabidopsis Thaliana] (GB:Q9M3C3); similar to ATRPL23A (RIBOSOMAL PROTEIN L23A), RNA binding / structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G"
MSGI1_20360	TC18646	412	179.3	148.1	210.7	-1.2	0	1.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L14 (RPL14A)  Identical to 60S ribosomal protein L14-1 (RPL14A) [Arabidopsis Thaliana] (GB:Q9SIM4); similar to 60S ribosomal protein L14 (RPL14B) [Arabidopsis thaliana] (TAIR:AT4G27090.1); similar to glycoprotein-like protein [Solanu
MSGI1_5270	TC18650	28.8	8.3	7.8	6.5	-1.8	0	1.9	0	lipid metabolism.FA synthesis and FA elongation.Acetyl CoA Carboxylation	"BCCP/BCCP-1/BCCP1/CAC1-A/CAC1A (BIOTIN CARBOXYL CARRIER, BIOTIN CARBOXYL CARRIER PROTEIN 1); biotin binding Encodes for the biotin carboxyl-carrier subunit of the multi-enzyme plastidial acetyl-coenzyme A carboxylase complex. Identical to Biotin carboxyl"
MSGI1_12815	TC18655	9.1	26.3	0.3	0.6	0	0	0	5.5	not assigned.unknown	not assigned.unknown
MSGI1_22236	TC18664	12.4	16.1	53.4	20.7	0	-1.4	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_12726	TC1867	53.3	119.4	26	84.2	1.2	1.7	0	0	cell wall	phosphate-responsive 1 family protein  similar to phosphate-responsive 1 family protein [Arabidopsis thaliana] (TAIR:AT2G17230.1); similar to unknown [Sorghum bicolor] (GB:AAQ06267.1); contains InterPro domain Phosphate-induced protein 1 conserved region;
MSGI1_5901	TC18673	19.6	1.3	46	2.3	-3.9	-4.3	0	0	cell wall.degradation.pectate lyases and polygalacturonases	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT1G02460.1); similar to unknown protein [O
MSGI1_22096	TC18677	23.7	8.5	36.7	8.4	0	-2.1	0	0	minor CHO metabolism.galactose.alpha-galactosidases	"glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family protein  similar to alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative [Arabidopsis thaliana] (TAIR:AT3G56310.1"
MSGI1_11596	TC18686	96.2	50.9	37.7	36.4	0	0	1.4	0	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2A.4 (HTA12) [Arabidopsis Thaliana] (GB:Q9LZ46); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT5G59870.1); similar to Histone H2A (GB:Q9M531); contains InterPro domain Histone-fold;"
MSGI1_44802	TC18690	19	32.1	20.6	8.8	0	0	0	1.9	not assigned.unknown	not assigned.unknown
MSGI1_113466	TC18691	41.4	22.8	58.9	15.8	0	-1.9	0	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL1 (BETA GALACTOSIDASE 1); beta-galactosidase beta-galactosidase, glycosyl hydrolase family 35 similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1); similar to BGAL3 (beta-galactosidase 3), beta-galacto"
MSGI1_113466	TC18691	41.4	22.8	58.9	15.8	0	-1.9	0	0	"misc.gluco-, galacto- and mannosidases"	"BGAL1 (BETA GALACTOSIDASE 1); beta-galactosidase beta-galactosidase, glycosyl hydrolase family 35 similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1); similar to BGAL3 (beta-galactosidase 3), beta-galacto"
MSGI1_5345	TC18694	8	7.5	10.5	28	0	0	0	-1.9	RNA.regulation of transcription.C2H2 zinc finger family	RNA recognition motif (RRM)-containing protein  similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G22100.1); similar to RNA-binding protein [Gymnadenia conopsea] (GB:ABD66518.1); contains InterPro domain Nucleotide
MSGI1_5345	TC18694	8	7.5	10.5	28	0	0	0	-1.9	RNA.RNA binding	"GR-RBP3 (glycine-rich RNA-binding protein 3); RNA binding encodes a glycine-rich RNA binding protein. Gene expression is induced by cold. similar to GR-RBP5 (glycine-rich RNA-binding protein 5), RNA binding [Arabidopsis thaliana] (TAIR:AT1G74230.1); simi"
MSGI1_45919	TC18698	4.9	16.6	23.3	17.7	0	0	-2.2	0	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	"protein kinase, putative  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G01020.1); similar to Protein kinase [Medicago truncatula] (GB:ABE87464.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains In"
MSGI1_45919	TC18698	4.9	16.6	23.3	17.7	0	0	-2.2	0	cell wall	"protein kinase, putative  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G01020.1); similar to Protein kinase [Medicago truncatula] (GB:ABE87464.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains In"
MSGI1_94	TC187	96.5	143.9	271.6	215.5	0	0	-1.5	0	transport.p- and v-ATPases	"AHA5 (ARABIDOPSIS H(+)-ATPASE 5); ATPase  Identical to ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump 5) (AHA5) [Arabidopsis Thaliana] (GB:Q9SJB3); similar to AHA1 (PLASMA MEMBRANE PROTON ATPASE), ATPase [Arabidopsis thaliana] (TAIR:AT2G18960.1"
MSGI1_10003	TC18702	60.4	33.4	26.2	30.8	0	0	1.2	0	transport.misc	secretory carrier membrane protein (SCAMP) family protein  similar to secretory carrier membrane protein (SCAMP) family protein [Arabidopsis thaliana] (TAIR:AT2G20840.1); similar to similarity to SCAMP37 [Pisum sativum] (GB:AAC82326.1); similar to Os02g06
MSGI1_24106	TC1871	15	84.3	49.2	121.7	2.5	1.3	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_28833	TC18717	4.7	27.5	20.3	58	2.5	1.5	0	-1.1	not assigned.unknown	not assigned.unknown
MSGI1_20512	TC18719	132.2	53.4	41.4	69.9	-1.3	0	1.7	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S20 (RPS20C)  Identical to 40S ribosomal protein S20-1 (RPS20C) [Arabidopsis Thaliana] (GB:P49200;GB:Q42168;GB:Q9FPI1;GB:Q9LDG8); similar to 40S ribosomal protein S20 (RPS20A) [Arabidopsis thaliana] (TAIR:AT3G45030.1); similar to Os
MSGI1_39533	TC18720	5.4	26.9	12.5	2.7	2.3	0	0	3.3	RNA.regulation of transcription.PHOR1	U-box domain-containing protein  similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G19380.1); similar to putative immediate-early fungal elicitor protein CMPG1 [Oryza sativa (japonica cultivar-group)] (GB:BAD16187.1); contains Int
MSGI1_22026	TC18722	60.3	35.5	26.4	32.4	0	0	1.2	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_22026	TC18722	60.3	35.5	26.4	32.4	0	0	1.2	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_42514	TC18725	4.7	6.4	60.7	2.3	0	-4.7	-3.7	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	"AP2 domain-containing transcription factor, putative  similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT4G28140.1); similar to OSJNBa0074L08.10 [Oryza sativa (japonica cultivar-group)] (GB:CAD41199.2); similar"
MSGI1_12759	TC18726	62.4	6.9	11	2.8	-3.2	0	2.5	0	secondary metabolism.flavonoids.dihydroflavonols	UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01420.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thali
MSGI1_26146	TC18729	9.2	3.6	53.7	32.6	0	0	-2.5	-3.2	not assigned.unknown	not assigned.unknown
MSGI1_23545	TC18733	37.7	20.5	14.6	29.4	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_20260	TC18736	56.3	2.3	15.3	4.7	-4.6	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_24665	TC18748	16	29.5	17.4	42.6	0	1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_34896	TC18751	179.9	68.2	39.6	25.3	-1.4	0	2.2	1.4	cell wall	DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); protein binding Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. Identical to DNA-damage-repair/toleration protein DRT100 precursor (DRT100) [Arabidopsis Thaliana] (GB:Q00874;G
MSGI1_34896	TC18751	179.9	68.2	39.6	25.3	-1.4	0	2.2	1.4	DNA.repair	DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); protein binding Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. Identical to DNA-damage-repair/toleration protein DRT100 precursor (DRT100) [Arabidopsis Thaliana] (GB:Q00874;G
MSGI1_14667	TC18755	6.5	3.2	17.5	31.2	0	0	0	-3.3	not assigned.unknown	not assigned.unknown
MSGI1_15013	TC18759	25.6	31.6	0.4	0.2	0	0	6	7.3	stress.biotic	"disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT1G47890.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE79507.1); contains Inter"
MSGI1_15013	TC18759	25.6	31.6	0.4	0.2	0	0	6	7.3	cell wall	"disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT1G47890.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE79507.1); contains Inter"
MSGI1_11262	TC18772	29	3.4	15.2	2.7	-3.1	0	0	0	development.unspecified	"family II extracellular lipase 3 (EXL3)  similar to family II extracellular lipase 1 (EXL1) [Arabidopsis thaliana] (TAIR:AT1G75880.2); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE88162.1); contains InterPro domain Lipolytic enzyme,"
MSGI1_11262	TC18772	29	3.4	15.2	2.7	-3.1	0	0	0	cell wall	"family II extracellular lipase 3 (EXL3)  similar to family II extracellular lipase 1 (EXL1) [Arabidopsis thaliana] (TAIR:AT1G75880.2); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE88162.1); contains InterPro domain Lipolytic enzyme,"
MSGI1_11262	TC18772	29	3.4	15.2	2.7	-3.1	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_20511	TC18773	4.8	24.1	3.4	1.3	2.3	0	0	4.2	not assigned.unknown	not assigned.unknown
MSGI1_38015	TC18775	32	23.6	42.9	65.6	0	0	0	-1.5	protein.degradation.serine protease	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 1); endopeptidase Clp One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et.
MSGI1_23658	TC18777	83.6	35.6	22.8	46.2	-1.2	0	1.9	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S26 (RPS26C)  Identical to 40S ribosomal protein S26-3 (RPS26C) [Arabidopsis Thaliana] (GB:Q9LYK9); similar to 40S ribosomal protein S26 (RPS26B) [Arabidopsis thaliana] (TAIR:AT2G40590.1); similar to ribosomal protein S26 [Pisum sat
MSGI1_40604	TC18779	15.9	20.4	43.1	15.4	0	-1.5	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_2352	TC1878	34.1	40.7	28.8	76	0	1.4	0	0	transport.misc	"chloroplast ADP, ATP carrier protein 1 / ADP, ATP translocase 1 / adenine nucleotide translocase 1 (AATP1)  Identical to Chloroplast ADP,ATP carrier protein 1, chloroplast precursor (ADP/ATP translocase 1) (Adenine nucleotide translocase 1) (AATP1) [Arab"
MSGI1_14703	TC18783	15.4	29.3	45.8	14.4	0	-1.7	-1.6	0	cell wall	GRF9 (General regulatory factor 9); protein phosphorylated amino acid binding 14-3-3 gene. Binds calcium and displays induced structural changes. Identical to 14-3-3-like protein GF14 mu (General regulatory factor 9) (GRF9) [Arabidopsis Thaliana] (GB:Q96
MSGI1_14703	TC18783	15.4	29.3	45.8	14.4	0	-1.7	-1.6	0	signalling.14-3-3 proteins	GRF9 (General regulatory factor 9); protein phosphorylated amino acid binding 14-3-3 gene. Binds calcium and displays induced structural changes. Identical to 14-3-3-like protein GF14 mu (General regulatory factor 9) (GRF9) [Arabidopsis Thaliana] (GB:Q96
MSGI1_30897	TC18791	5.2	7	151.2	4.2	0	-5.2	-4.9	0	cell wall	"ANAC019 (Arabidopsis NAC domain containing protein 19); transcription factor encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro. Identical to NAC domain-conta"
MSGI1_30897	TC18791	5.2	7	151.2	4.2	0	-5.2	-4.9	0	cell wall	"ANAC019 (Arabidopsis NAC domain containing protein 19); transcription factor encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro. Identical to NAC domain-conta"
MSGI1_30897	TC18791	5.2	7	151.2	4.2	0	-5.2	-4.9	0	RNA.regulation of transcription.NAC domain transcription factor family	"ANAC019 (Arabidopsis NAC domain containing protein 19); transcription factor encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro. Identical to NAC domain-conta"
MSGI1_30897	TC18791	5.2	7	151.2	4.2	0	-5.2	-4.9	0	development.unspecified	"ANAC019 (Arabidopsis NAC domain containing protein 19); transcription factor encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro. Identical to NAC domain-conta"
MSGI1_2710	TC18793	2.5	19.4	2.7	9.7	3	0	0	0	cell.organisation	ATK4 (ARABIDOPSIS THALIANA KINESIN 4); microtubule motor Encodes a kinesin-like protein that binds microtubules in an ATP-dependent manner. Identical to Kinesin-4 (Kinesin-like protein D) (ATK4) [Arabidopsis Thaliana] (GB:O81635;GB:O04641); similar to mi
MSGI1_4624	TC18797	38.7	50.6	87.3	39.6	0	-1.1	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_19899	TC18799	1.6	13.3	24.2	9.1	0	0	-3.9	0	cell wall.degradation	peptidoglycan-binding LysM domain-containing protein  similar to peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G25433.1); similar to Os10g0524300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065106.1); similar
MSGI1_12658	TC18804	9.9	10.8	8.2	26.6	0	1.7	0	0	misc.misc2	dienelactone hydrolase family protein  similar to dienelactone hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G23600.1); similar to Dienelactone hydrolase [Medicago truncatula] (GB:ABE94325.1); contains InterPro domain Dienelactone hydrolase; (I
MSGI1_7472	TC18806	23.1	1.4	5.6	0.3	-4	0	2	0	misc.cytochrome P450	"CYP86A8 (LACERATA); fatty acid (omega-1)-hydroxylase/ oxygen binding Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems. similar to CYP86A4 (cytochrome P450, family 86, subf"
MSGI1_11014	TC18816	0.3	0.5	16.4	10.1	0	0	-5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_33366	TC18818	32.3	1	31.1	5.4	-5	-2.5	0	0	misc.short chain dehydrogenase/reductase (SDR)	short-chain dehydrogenase/reductase (SDR) family protein  similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT2G47130.1); similar to 3-beta hydroxysteroid dehydrogenase [Di (GB:AAV68714.1); contains InterPro
MSGI1_5730	TC18827	2.1	4.4	26.6	33.1	0	0	-3.7	-2.9	not assigned.unknown	not assigned.unknown
MSGI1_9050	TC18830	1.8	6	49.5	8.1	0	-2.6	-4.8	0	major CHO metabolism.degradation.starch.starch cleavage	"BMY3 (beta-amylase 3); beta-amylase putative beta-amylase BMY3 (BMY3) similar to CT-BMY (BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to beta-amylase [Glycine max] (GB:CAI39245.1); contains InterPro domain Glycoside hy"
MSGI1_20359	TC18845	89.9	2.6	66.4	26.6	-5.1	-1.3	0	-3.4	not assigned.unknown	not assigned.unknown
MSGI1_41715	TC18847	32.2	19.3	59.6	17.8	0	-1.7	0	0	amino acid metabolism.degradation.aspartate family.asparagine.L-asparaginase	"L-asparaginase, putative / L-asparagine amidohydrolase, putative  Identical to Probable L-asparaginase 2 precursor (EC 3.5.1.1) (L-asparagine amidohydrolase 2) [Contains: L-asparaginase 2 subunit alpha; L- asparaginase 2 subunit beta] [Arabidopsis Thalia"
MSGI1_63533	TC18848	20.1	9.3	33.5	6.4	0	-2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_11962	TC18859	4.3	13.8	27.8	9.5	0	0	-2.7	0	hormone metabolism.cytokinin.signal transduction	"AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2. similar to WOL (CYTOKININ RESPONSE 1) [Arabidopsis"
MSGI1_22378	TC18860	2.5	2.5	22.3	5.9	0	0	-3.2	0	cell wall	"acetylesterase, putative  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G26430.1); similar to lanatoside 15-O-acetylesterase [Di (GB:AAY41077.1); similar to lanatoside 15'-O-acetylesterase [Di (GB:CAA09694.1); cont"
MSGI1_22378	TC18860	2.5	2.5	22.3	5.9	0	0	-3.2	0	misc.acyl transferases	"acetylesterase, putative  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G26430.1); similar to lanatoside 15-O-acetylesterase [Di (GB:AAY41077.1); similar to lanatoside 15'-O-acetylesterase [Di (GB:CAA09694.1); cont"
MSGI1_22378	TC18860	2.5	2.5	22.3	5.9	0	0	-3.2	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_18226	TC18866	9.9	41.3	16.2	29.2	2.1	0	0	0	transport.misc	permease  Identical to Nucleobase-ascorbate transporter 11 (AtNAT11) (NAT11) [Arabidopsis Thaliana] (GB:Q6SZ87;GB:Q8GWX5;GB:Q8LC52;GB:Q9SZK5); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:AT2G27810.1); similar to putativ
MSGI1_15884	TC18873	23.3	5.9	11.2	10.1	-2	0	0	0	PS.lightreaction.other electron carrier (ox/red).ferredoxin	ferredoxin-related  similar to ferredoxin-related [Arabidopsis thaliana] (TAIR:AT4G32590.1); similar to Ferredoxin [Medicago truncatula] (GB:ABE80924.1); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain
MSGI1_32260	TC18892	206.8	102.3	73.7	94	-1	0	1.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L39 (RPL39C)  Identical to 60S ribosomal protein L39-1 (RPL39C) [Arabidopsis Thaliana] (GB:P51424;GB:Q541X1;GB:Q93VI7;GB:Q9SIS1); similar to 60S ribosomal protein L39 (RPL39B) [Arabidopsis thaliana] (TAIR:AT3G02190.1); similar to put
MSGI1_19514	TC18908	11.9	13	1.4	0.3	0	0	0	5.4	signalling.receptor kinases.leucine rich repeat XII	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G47570.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsi"
MSGI1_5685	TC18909	52.7	167.2	203.8	138.6	1.7	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_3575	TC1891	158	54.1	108.7	82.1	-1.5	0	0	0	cell wall.cell wall proteins.RGP	"RGP2 (Reversibly glycosylated polypeptide-3); DNA binding / alpha-1,4-glucan-protein synthase (UDP-forming) Reversibly Glycosylated Polypeptide-2 similar to RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1) [Arabidopsis thaliana] (TAIR:AT3G02230.1); similar t"
MSGI1_22831	TC18915	23.5	63.1	32	41.8	1.4	0	0	0	cell wall	NIK1 (NSP-INTERACTING KINASE 1); kinase  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G23950.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis t
MSGI1_22831	TC18915	23.5	63.1	32	41.8	1.4	0	0	0	signalling.receptor kinases.leucine rich repeat II	NIK1 (NSP-INTERACTING KINASE 1); kinase  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G23950.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis t
MSGI1_23231	TC18927	46	3.4	7.6	1.5	-3.8	0	2.6	0	secondary metabolism.flavonoids.dihydroflavonols	UDP-glucoronosyl/UDP-glucosyl transferase family protein the glycosyltransferase (UGT72B1) is involved in metabolizing xenobiotica (chloroaniline and chlorophenole). Comparison between wild type and knock-out mutant demonstrates the central role of this g
MSGI1_11203	TC18930	57.6	21.2	20.5	25.2	-1.4	0	1.5	0	mitochondrial electron transport / ATP synthesis.cytochrome c oxidase	"cytochrome c oxidase family protein  similar to cytochrome c oxidase family protein [Arabidopsis thaliana] (TAIR:AT3G15640.1); similar to cytochrome c oxidase subunit Vb [Pisum sativum] (GB:BAF30483.1); contains InterPro domain Cytochrome c oxidase, subu"
MSGI1_47367	TC18957	0.1	0	18.9	23	0	0	-7.6	-5.5	nucleotide metabolism.degradation	FAC1 (EMBRYONIC FACTOR1); AMP deaminase Encodes a protein with in vitro AMP deaminase activity that is involved in embryogenesis. Homozygous mutant embryos fail to develop past the zygote stage. Identical to AMP deaminase (EC 3.5.4.6) (AtAMPD) (Protein EM
MSGI1_24916	TC18969	71.1	63.1	105.2	40.3	0	-1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_10453	TC18976	8.3	2.8	41.1	6.3	0	-2.7	-2.3	0	transport.ABC transporters and multidrug resistance systems	ATMRP14 (Arabidopsis thaliana multidrug resistance-associated protein 14) member of MRP subfamily similar to ATMRP5 (Arabidopsis thaliana multidrug resistance-associated protein 5) [Arabidopsis thaliana] (TAIR:AT1G04120.1); similar to ATMRP8 (Arabidopsis
MSGI1_7436	TC18983	9	33.2	16.9	18.2	1.9	0	0	0	transport.amino acids	"AAP6 (AMINO ACID PERMEASE 6); amino acid permease Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem. similar to AAP1 (AMINO ACID PERMEASE 1), amino acid permeas"
MSGI1_21949	TC18990	15.4	76.5	41	7.3	2.3	-2.5	-1.4	3.4	RNA.regulation of transcription.PHOR1	U-box domain-containing protein  similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G66160.1); similar to syringolide-induced protein 13-1-1 [Glycine max] (GB:BAB86896.1); contains InterPro domain Armadillo-like helical; (InterPro:
MSGI1_35678	TC18996	24.1	14.6	9.2	36.2	0	2	0	0	misc.invertase/pectin methylesterase inhibitor family protein	invertase/pectin methylesterase inhibitor family protein  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT5G46940.1); similar to sts15 [Solanum tuberosum] (GB:CAA56643.1); contains InterPro domain Plant i
MSGI1_11070	TC18999	4.7	25.8	36.6	24.7	2.5	0	-3	0	RNA.regulation of transcription.MADS box transcription factor family	"AGL6 (AGAMOUS LIKE-6); DNA binding / transcription factor sequence suggests this encodes a MADS-box transcription factor Identical to Agamous-like MADS-box protein AGL6 (AGL6) [Arabidopsis Thaliana] (GB:P29386); similar to AGL13 (AGAMOUS-LIKE 13), DNA bi"
MSGI1_3100	TC1900	41.2	23.4	16.9	27.7	0	0	1.3	0	lipid metabolism.FA synthesis and FA elongation.ACP oxoacyl reductase	"3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase  Identical to 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplast precursor (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase) [Arabidopsis Th"
MSGI1_8372	TC19000	5.4	12.1	74.7	11.2	0	-2.7	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_15701	TC19001	5.4	15.3	26.7	3.2	0	-3.1	-2.3	0	protein.degradation.ubiquitin.E3.SCF.FBOX	F-box family protein  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G27310.1); similar to Os11g0155100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065788.1); similar to H0622F05.2 [Oryza sativa (indica cultivar-group)] (GB:CAH664
MSGI1_26056	TC19019	13.4	10.7	55.2	21	0	-1.4	-2	0	secondary metabolism.flavonoids.anthocyanins	transferase family protein  similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G01210.1); similar to AER [Nicotiana tabacum] (GB:AAM73656.1); contains InterPro domain Transferase; (InterPro:IPR003480)
MSGI1_47366	TC19020	15.7	19.2	0	0	0	0	5	5.3	not assigned.unknown	not assigned.unknown
MSGI1_14193	TC19022	172.4	122	66.7	115.9	0	0	1.4	0	protein.synthesis.misc ribososomal protein	60S acidic ribosomal protein P2 (RPP2D)  Identical to 60S acidic ribosomal protein P2-4 (RPP2D) [Arabidopsis Thaliana] (GB:Q9LXM8); similar to 60S acidic ribosomal protein P2 (RPP2A) [Arabidopsis thaliana] (TAIR:AT2G27720.1); similar to 60s acidic ribosom
MSGI1_25584	TC19030	48.3	13	26.3	22	-1.9	0	0	0	secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA reductase	"HMG1 (3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE) Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in l"
MSGI1_27811	TC19033	194.3	89.2	111.5	111.6	-1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_19649	TC19039	25.2	24.9	4.7	4.2	0	0	2.4	2.6	not assigned.unknown	not assigned.unknown
MSGI1_4133	TC19042	267.5	44.3	155	61.1	-2.6	-1.3	0	0	RNA.regulation of transcription.Aux/IAA family	IAA14 (SOLITARY ROOT); transcription factor IAA14 is a member of the Aux/IAA protein family.   Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in st
MSGI1_4133	TC19042	267.5	44.3	155	61.1	-2.6	-1.3	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	IAA14 (SOLITARY ROOT); transcription factor IAA14 is a member of the Aux/IAA protein family.   Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in st
MSGI1_1851	TC1905	5.1	6.7	20.1	3.3	0	-2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_22025	TC19061	81.3	3.1	37.4	2.5	-4.7	-3.9	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_5000	TC19063	17.8	44.9	21.9	21.3	1.3	0	0	0	misc.UDP glucosyl and glucoronyl transferases	UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01390.1); similar to UDP-glycosyltransferase 88B1 [Stevia rebaudiana] (GB:AAR06919.1); contains
MSGI1_5000	TC19063	17.8	44.9	21.9	21.3	1.3	0	0	0	secondary metabolism.flavonoids.dihydroflavonols	UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01390.1); similar to UDP-glycosyltransferase 88B1 [Stevia rebaudiana] (GB:AAR06919.1); contains
MSGI1_13428	TC19071	4.4	2.8	28.1	31.6	0	0	-2.7	-3.5	not assigned.unknown	not assigned.unknown
MSGI1_21545	TC19073	24.4	5.2	13.6	7.3	-2.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_16802	TC19091	1.6	8.3	135.7	5	0	-4.8	-6.4	0	development.unspecified	dormancy/auxin associated family protein  similar to dormancy/auxin associated protein-related [Arabidopsis thaliana] (TAIR:AT1G54070.1); similar to Dormancyauxin associated [Medicago truncatula] (GB:ABE80617.1); contains InterPro domain Dormancyauxin ass
MSGI1_13807	TC19094	17.4	19.9	54.7	25.8	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_14904	TC19096	11.6	16.2	36.2	18.3	0	0	-1.6	0	minor CHO metabolism.myo-inositol.poly-phosphatases	"inositol polyphosphate 5-phosphatase, putative  similar to IP5PI (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I), inositol-polyphosphate 5-phosphatase [Arabidopsis thaliana] (TAIR:AT1G34120.1); similar to Os01g0716800 [Oryza sativa (japonica cultivar-group)] (G"
MSGI1_14666	TC19115	12	0.7	14.6	0.4	-4.1	-5.2	0	0	RNA.processing.ribonucleases	"RNS1 (RIBONUCLEASE 1); endoribonuclease member of the ribonuclease T2 family, responds to inorganic phosphate starvation, and inhibits production of anthocyanin.  Also involved in wound-induced signaling independent of jasmonic acid. Identical to Ribonuc"
MSGI1_46792	TC19127	20.2	30.3	72.2	22.9	0	-1.7	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_13806	TC19133	34.8	84.4	88.5	85.4	1.3	0	-1.3	0	RNA.regulation of transcription.bZIP transcription factor family	GBF6 (G-box binding factor 6); DNA binding / transcription factor Encodes a basic domain leucine zipper (bZip) transcription factor. similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G75390.1); similar to cAMP response e
MSGI1_33263	TC19138	316.8	165.8	121.9	218.8	0	0	1.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L37 (RPL37B)  Identical to 60S ribosomal protein L37-2 (RPL37B) [Arabidopsis Thaliana] (GB:Q43292;GB:Q9C822); similar to 60S ribosomal protein L37 (RPL37C) [Arabidopsis thaliana] (TAIR:AT3G16080.1); similar to ribosomal protein L37 [
MSGI1_3616	TC19141	146.2	72.6	42.8	89.6	-1	1.1	1.8	0	protein.synthesis.misc ribososomal protein	60S acidic ribosomal protein P0 (RPP0B)  Identical to 60S acidic ribosomal protein P0-2 (RPP0B) [Arabidopsis Thaliana] (GB:Q42112;GB:Q8LCI7;GB:Q9SR42;GB:Q9SS70); similar to 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] (TAIR:AT3G11250.1);
MSGI1_14903	TC19146	6.2	9.4	6	62	0	3.4	0	-2.7	transport.metabolite transporters at the envelope membrane	"GPT2 (glucose-6-phosphate/phosphate translocator 2); antiporter/ glucose-6-phosphate transporter glucose6-Phosphate/phosphate transporter 2 Identical to Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor (GPT2) [Arabidopsis Thaliana] (GB"
MSGI1_14903	TC19146	6.2	9.4	6	62	0	3.4	0	-2.7	major CHO metabolism.synthesis.starch.transporter	"GPT2 (glucose-6-phosphate/phosphate translocator 2); antiporter/ glucose-6-phosphate transporter glucose6-Phosphate/phosphate transporter 2 Identical to Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor (GPT2) [Arabidopsis Thaliana] (GB"
MSGI1_11743	TC19166	13.1	14.3	0.1	0.1	0	0	7	7.2	not assigned.unknown	not assigned.unknown
MSGI1_6102	TC1917	244.7	260.5	45.1	68.3	0	0	2.4	1.9	not assigned.unknown	not assigned.unknown
MSGI1_54672	TC19173	12.3	22.2	3.7	19.3	0	2.4	0	0	cell wall.cellulose synthesis.cellulose synthase	"CESA4 (CELLULASE SYNTHASE 4); transferase, transferring glycosyl groups Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Identical to Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC 2.4.1.12) (AtCesA-4) (Irregular xyl"
MSGI1_19897	TC1918	1.4	17.4	29.4	11.4	3.6	0	-4.4	0	not assigned.unknown	not assigned.unknown
MSGI1_19149	TC19187	7.6	9.6	30.4	26.8	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_16961	TC1919	3.2	47.7	59.9	19.5	3.9	-1.6	-4.2	1.3	not assigned.unknown	not assigned.unknown
MSGI1_20806	TC19193	0	0.2	145	1	0	-7.2	-8.2	0	development.late embryogenesis abundant	"late embryogenesis abundant protein, putative / LEA protein, putative  similar to late embryogenesis abundant protein, putative / LEA protein, putative [Arabidopsis thaliana] (TAIR:AT1G52690.2); similar to group 3 late embryogenesis abundant protein [Bra"
MSGI1_78537	TC19200	5.3	21.8	40.9	35.7	0	0	-2.9	0	protein.degradation.ubiquitin.E3.SCF.FBOX	"kelch repeat-containing F-box family protein  similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT3G59940.1); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE78686.1"
MSGI1_18743	TC19206	3.1	10.3	18.9	7.3	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_25503	TC19222	22.1	27.8	23.2	59.7	0	1.4	0	-1.1	amino acid metabolism.degradation.branched-chain group.shared	enoyl-CoA hydratase/isomerase family protein  similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:AT4G14430.1); similar to Enoyl-CoA hydratase/isomerase [Medicago truncatula] (GB:ABD28677.1); contains InterPro domain Enoyl
MSGI1_25503	TC19222	22.1	27.8	23.2	59.7	0	1.4	0	-1.1	lipid metabolism.lipid degradation.beta-oxidation.enoyl CoA hydratase	enoyl-CoA hydratase/isomerase family protein  similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:AT4G14430.1); similar to Enoyl-CoA hydratase/isomerase [Medicago truncatula] (GB:ABD28677.1); contains InterPro domain Enoyl
MSGI1_25503	TC19222	22.1	27.8	23.2	59.7	0	1.4	0	-1.1	amino acid metabolism.degradation.aromatic aa.tryptophan	enoyl-CoA hydratase/isomerase family protein  similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:AT4G14430.1); similar to Enoyl-CoA hydratase/isomerase [Medicago truncatula] (GB:ABD28677.1); contains InterPro domain Enoyl
MSGI1_25503	TC19222	22.1	27.8	23.2	59.7	0	1.4	0	-1.1	amino acid metabolism.degradation.aspartate family.lysine	enoyl-CoA hydratase/isomerase family protein  similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:AT4G14430.1); similar to Enoyl-CoA hydratase/isomerase [Medicago truncatula] (GB:ABD28677.1); contains InterPro domain Enoyl
MSGI1_15156	TC19231	23.9	13.1	5.1	7.3	0	0	2.2	0	cell wall	"glycosyl hydrolase family protein 17  similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT2G43670.1); similar to Os01g0243700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042566.1); similar to putative beta-1,3-glucanase"
MSGI1_15156	TC19231	23.9	13.1	5.1	7.3	0	0	2.2	0	"misc.beta 1,3 glucan hydrolases"	"glycosyl hydrolase family protein 17  similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT2G43670.1); similar to Os01g0243700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042566.1); similar to putative beta-1,3-glucanase"
MSGI1_3261	TC19234	4.8	12.9	0	0	0	0	0	4.7	RNA.processing.ribonucleases	RNase H domain-containing protein  similar to reverse transcriptase-related [Arabidopsis thaliana] (TAIR:AT4G12275.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contain
MSGI1_35677	TC19263	14.4	26.8	57.2	20.8	0	-1.5	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_17871	TC19266	0.4	0.5	62.7	0.4	0	-7.3	-7.3	0	not assigned.unknown	not assigned.unknown
MSGI1_23432	TC19276	144.4	67.5	57.8	81.9	-1.1	0	1.3	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L37 (RPL37B)  Identical to 60S ribosomal protein L37-2 (RPL37B) [Arabidopsis Thaliana] (GB:Q43292;GB:Q9C822); similar to 60S ribosomal protein L37 (RPL37C) [Arabidopsis thaliana] (TAIR:AT3G16080.1); similar to ribosomal protein L37 [
MSGI1_81983	TC19277	2.6	13.6	15.8	1.6	0	-3.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_43196	TC19278	0.6	0.1	124.1	1.2	0	-6.7	-7.7	0	protein.postranslational modification	"protein phosphatase 2C, putative / PP2C, putative  similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G29380.1); similar to protein phosphatase 2C [Nicotiana tabacum] (GB:CAC10358.1); contains InterPro domain Pro"
MSGI1_7011	TC19284	5.6	11.6	29.8	10.5	0	0	-2.4	0	transport.ABC transporters and multidrug resistance systems	ATGCN1 (Arabidopsis thaliana general control non-repressible 1) member of GCN subfamily similar to ATGCN4 (Arabidopsis thaliana general control non-repressible 4) [Arabidopsis thaliana] (TAIR:AT3G54540.1); similar to ABC transporter homolog [Populus nigr
MSGI1_29481	TC19295	3	11.8	19.7	15	0	0	-2.7	0	hormone metabolism.auxin.induced-regulated-responsive-activated	auxin-responsive family protein  similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT3G61900.1); similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G00880.1); similar to Auxin responsive SAUR protein [Medicago
MSGI1_37545	TC19304	0	0.1	7.6	13	0	0	0	-7	not assigned.unknown	not assigned.unknown
MSGI1_1050	TC1931	11.2	12.9	20.8	36.4	0	0	0	-1.5	protein.degradation.subtilases	XSP1 (XYLEM SERINE PEPTIDASE 1); subtilase  Identical to Xylem serine proteinase 1 precursor (EC 3.4.21.-) (AtXSP1) (Cucumisin- like protein) (XSP1) [Arabidopsis Thaliana] (GB:Q9LLL8;GB:O81324); similar to subtilase family protein [Arabidopsis thaliana]
MSGI1_1050	TC1931	11.2	12.9	20.8	36.4	0	0	0	-1.5	cell wall	XSP1 (XYLEM SERINE PEPTIDASE 1); subtilase  Identical to Xylem serine proteinase 1 precursor (EC 3.4.21.-) (AtXSP1) (Cucumisin- like protein) (XSP1) [Arabidopsis Thaliana] (GB:Q9LLL8;GB:O81324); similar to subtilase family protein [Arabidopsis thaliana]
MSGI1_26294	TC19324	36	13	16.3	11.6	-1.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_6474	TC1933	308	160	136.8	62.5	0	-1.1	1.2	1.4	RNA.regulation of transcription.Aux/IAA family	IAA14 (SOLITARY ROOT); transcription factor IAA14 is a member of the Aux/IAA protein family.   Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in st
MSGI1_6474	TC1933	308	160	136.8	62.5	0	-1.1	1.2	1.4	hormone metabolism.auxin.induced-regulated-responsive-activated	IAA14 (SOLITARY ROOT); transcription factor IAA14 is a member of the Aux/IAA protein family.   Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in st
MSGI1_31364	TC19334	2.5	2.8	16.9	15.5	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_23430	TC19344	9.1	14.3	30.8	9.6	0	-1.7	-1.8	0	protein.degradation.autophagy	"ATG8H (AUTOPHAGY 8H); microtubule binding  similar to APG8H (autophagy 8H), microtubule binding [Arabidopsis thaliana] (TAIR:AT3G15580.1); similar to Light chain 3 (LC3) [Medicago truncatula] (GB:ABE82404.1); contains InterPro domain Light chain 3 (LC3);"
MSGI1_13805	TC19352	12.1	13.5	35.7	17.1	0	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_8329	TC1936	0.4	1	55.7	64.7	0	0	-7.1	-6	not assigned.unknown	not assigned.unknown
MSGI1_32258	TC19361	11.7	37.1	17.9	12.8	1.7	0	0	1.5	not assigned.unknown	not assigned.unknown
MSGI1_5416	TC19363	11.4	12.1	0.1	0	0	0	6.8	4.6	not assigned.unknown	not assigned.unknown
MSGI1_43195	TC19369	3.6	22.6	4	8.4	2.7	0	0	0	RNA.regulation of transcription.C2H2 zinc finger family	"zinc finger (C2H2 type) protein (WIP3)  similar to TT1 (TRANSPARENT TESTA 1), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34790.1); similar to Os05g0444200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055679.1); similar to Zinc finger, C2"
MSGI1_26503	TC1937	0	0.2	36.6	40.9	0	0	-6.2	-7.7	not assigned.unknown	not assigned.unknown
MSGI1_17665	TC19370	32	22.4	93.7	47.6	0	0	-1.5	0	stress.abiotic.unspecified	GLP7 (GERMIN-LIKE PROTEIN 7); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP7) Identical to Germin-like protein subfamily 1 member 1 precursor (GLP7) [Arabidopsis Thaliana] (GB:P92998;GB:Q9S7Q1); similar to germin
MSGI1_17665	TC19370	32	22.4	93.7	47.6	0	0	-1.5	0	cell wall	GLP7 (GERMIN-LIKE PROTEIN 7); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP7) Identical to Germin-like protein subfamily 1 member 1 precursor (GLP7) [Arabidopsis Thaliana] (GB:P92998;GB:Q9S7Q1); similar to germin
MSGI1_31113	TC19385	21.9	70.8	26.8	42.2	1.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_21065	TC19399	29.9	23.2	78.9	33.1	0	-1.3	-1.4	0	cell wall	GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP5) Identical to Germin-like protein subfamily 2 member 1 precursor (GLP4) [Arabidopsis Thaliana] (GB:P94014;GB:O80538;GB:P94097); similar
MSGI1_21065	TC19399	29.9	23.2	78.9	33.1	0	-1.3	-1.4	0	stress.abiotic.unspecified	GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP5) Identical to Germin-like protein subfamily 2 member 1 precursor (GLP4) [Arabidopsis Thaliana] (GB:P94014;GB:O80538;GB:P94097); similar
MSGI1_4072	TC1940	13	28.3	50	22.3	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_26053	TC19400	6.7	40.3	9.8	26.6	2.6	0	0	0	transport.nucleotides	"ATPUP3 (Arabidopsis thaliana purine permease 3); purine transporter Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. si"
MSGI1_23086	TC19430	5	46.8	7.9	18.1	3.2	0	0	1.4	not assigned.unknown	not assigned.unknown
MSGI1_2758	TC1944	65.8	30.7	22.9	26.7	-1.1	0	1.5	0	protein.degradation.subtilases	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G20430.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabid"
MSGI1_2758	TC1944	65.8	30.7	22.9	26.7	-1.1	0	1.5	0	cell wall	"subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G20430.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabid"
MSGI1_20358	TC19440	11.3	23.9	34.4	14.7	0	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_32963	TC19451	19.8	0	22.5	2	-5.3	-3.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_15046	TC19455	20.1	30.7	43.7	81.4	0	0	0	-1.4	stress.biotic	disease resistance-responsive protein-related / dirigent protein-related  similar to disease resistance-responsive protein-related / dirigent protein-related [Arabidopsis thaliana] (TAIR:AT5G49040.1); similar to dirigent-like protein pDIR4 [Picea engelman
MSGI1_74013	TC19459	23.9	1.5	7.3	10.7	-4	0	0	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	"CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding Subunit of light-harvesting complex II (LHCII),which absorbs light and transfers energy to the photosynthetic reaction center. Identical to Chlorophyll a-b binding protein 2, chloroplast precu"
MSGI1_16011	TC19461	36.3	1.3	12.4	1.1	-4.8	0	1.5	0	TCA / org. transformation.other organic acid transformaitons.malic	"ATNADP-ME3 (NADP-MALIC ENZYME 3); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor The malic enzyme (EC 1.1.1.40) encoded by the ATNADP-ME3 is presumably cytosolic"
MSGI1_50104	TC19466	20.9	2.8	6	4.4	-2.9	0	0	0	cell wall.modification	"ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to E"
MSGI1_49590	TC19481	89.8	25.1	47.2	11.5	-1.8	-2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_25976	TC19491	30.7	18.2	44.3	43.5	0	0	0	-1.3	mitochondrial electron transport / ATP synthesis.cytochrome c	"CYTC-2 (CYTOCHROME C-2); electron carrier Encodes cytochrome c. Promoter directs preferential expression in vascular tissues of cotyledons, leaves, roots, and hypocotyls, and in anthers. Identical to Probable cytochrome c At4g10040 [Arabidopsis Thaliana]"
MSGI1_17841	TC19493	27.8	6.5	8.3	9.6	-2.1	0	1.7	0	"misc.oxidases - copper, flavone etc."	"SKS4 (SKU5 Similar 4); copper ion binding / oxidoreductase  similar to SKS6 (SKU5 Similar 6), pectinesterase [Arabidopsis thaliana] (TAIR:AT1G41830.1); similar to SKS8 (SKU5 Similar 8), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1"
MSGI1_64994	TC19504	160.2	76.9	63.7	148.2	-1.1	1.2	1.3	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S30 (RPS30C)  Identical to 40S ribosomal protein S30 (RPS30C) [Arabidopsis Thaliana] (GB:P49689;GB:O82203;GB:Q9M0E4); similar to 40S ribosomal protein S30 (RPS30A) [Arabidopsis thaliana] (TAIR:AT2G19750.1); similar to 40S ribosomal p
MSGI1_9691	TC19517	0.1	0.5	18.1	33.3	0	0	-7.5	-6.1	protein.degradation.ubiquitin.E3.SCF.FBOX	F-box family protein  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G56810.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE78248.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyc
MSGI1_24821	TC19536	66.7	70.8	31.1	47	0	0	1.1	0	protein.targeting.secretory pathway.unspecified	sec61beta family protein  similar to sec61beta family protein [Arabidopsis thaliana] (TAIR:AT3G60540.2); similar to Sec61beta [Medicago truncatula] (GB:ABD33060.1); contains InterPro domain Sec61beta; (InterPro:IPR005609)
MSGI1_44207	TC19542	4.2	1.7	20.7	16.4	0	0	-2.3	-3.3	transport.peptides and oligopeptides	proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G45700.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arab
MSGI1_8575	TC1955	27.6	23.2	37.3	57.7	0	0	0	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_36094	TC19552	59.5	64.6	135	47.1	0	-1.5	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_51762	TC19574	0.7	0.4	175.3	1.2	0	-7.2	-8	0	not assigned.unknown	not assigned.unknown
MSGI1_2496	TC19581	4.9	20.9	0.4	0.5	0	0	0	5.4	not assigned.unknown	not assigned.unknown
MSGI1_26879	TC19598	5.5	2.3	86	8.3	0	-3.4	-4	0	stress.abiotic.cold	RCI2B (RARE-COLD-INDUCIBLE 2B)  Identical to Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B) (RCI2B) [Arabidopsis Thaliana] (GB:Q9ZNS6;GB:Q9M9K9); similar to RCI2A (RARE-COLD-INDUCIBLE 2A) [Arabidopsis thaliana] (TAIR:AT3G05
MSGI1_26879	TC19598	5.5	2.3	86	8.3	0	-3.4	-4	0	stress.abiotic.drought/salt	RCI2B (RARE-COLD-INDUCIBLE 2B)  Identical to Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B) (RCI2B) [Arabidopsis Thaliana] (GB:Q9ZNS6;GB:Q9M9K9); similar to RCI2A (RARE-COLD-INDUCIBLE 2A) [Arabidopsis thaliana] (TAIR:AT3G05
MSGI1_19804	TC19599	139.3	60.2	48.4	63.6	-1.2	0	1.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L35a (RPL35aC)  Identical to 60S ribosomal protein L35a-3 (RPL35AC) [Arabidopsis Thaliana] (GB:Q9C912); similar to 60S ribosomal protein L35a (RPL35aA) [Arabidopsis thaliana] (TAIR:AT1G07070.1); similar to ribosomal protein L33 [Cast
MSGI1_20171	TC19600	4.5	5.9	66.5	0.8	0	-6.4	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_9182	TC19601	12.7	10.2	0	0	0	0	4.7	0	transport.metabolite transporters at the mitochondrial membrane	dicarboxylate/tricarboxylate carrier (DTC)  similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT2G22500.1); similar to Mitochondrial carrier protein [Medicago truncatula] (GB:ABE79078.1); similar to oxoglutarate malate
MSGI1_6108	TC19604	12.6	8.2	1.1	3.2	0	0	3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_6333	TC1961	68.4	205	134.8	50.3	1.6	-1.4	0	2	hormone metabolism.ethylene.signal transduction	ATERF-4/ATERF4/ERF4/RAP2.5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4); DNA binding / protein binding / transcription factor/ transcriptional repressor Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription facto
MSGI1_6333	TC1961	68.4	205	134.8	50.3	1.6	-1.4	0	2	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	ATERF-4/ATERF4/ERF4/RAP2.5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4); DNA binding / protein binding / transcription factor/ transcriptional repressor Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription facto
MSGI1_4697	TC19614	1.4	11.8	33	20.4	0	0	-4.6	0	cell.organisation	"ATMAP70-5 (microtubule-associated proteins 70-5); microtubule binding Encodes a microtubule associated protein (MAP70-5). Expressed in all tissues. similar to ATMAP70-3 (microtubule-associated proteins 70-3), microtubule binding [Arabidopsis thaliana] (T"
MSGI1_55151	TC19619	0	0	39.4	25.9	0	0	-6.3	-5.7	not assigned.unknown	not assigned.unknown
MSGI1_13769	TC19638	68.8	13.4	25.8	10.9	-2.4	0	1.4	0	hormone metabolism.auxin.induced-regulated-responsive-activated	IAA19 (indoleacetic acid-induced protein 19); transcription factor IAA induced protein 19 Identical to Auxin-responsive protein IAA19 (Indoleacetic acid-induced protein 19) (MASSUGU2 protein) (IAA19) [Arabidopsis Thaliana] (GB:O24409;GB:Q8L8X3;GB:Q9LDL6)
MSGI1_13769	TC19638	68.8	13.4	25.8	10.9	-2.4	0	1.4	0	RNA.regulation of transcription.Aux/IAA family	IAA19 (indoleacetic acid-induced protein 19); transcription factor IAA induced protein 19 Identical to Auxin-responsive protein IAA19 (Indoleacetic acid-induced protein 19) (MASSUGU2 protein) (IAA19) [Arabidopsis Thaliana] (GB:O24409;GB:Q8L8X3;GB:Q9LDL6)
MSGI1_43833	TC19646	8.7	5.2	28.4	34.8	0	0	0	-2.7	not assigned.unknown	not assigned.unknown
MSGI1_3657	TC1965	25.7	50.1	66.7	59.3	0	0	-1.4	0	stress.abiotic.touch/wounding	wound-responsive protein-related  similar to wound-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G19660.2); similar to wound inducive gene [Nicotiana tabacum] (GB:BAA95791.1); contains domain no description (G3D.4.10.860.10)
MSGI1_31688	TC19655	11.2	12.2	32.1	9.3	0	-1.8	0	0	protein.degradation.ubiquitin.E2	UBC4 (UBIQUITIN CONJUGATING ENZYME 4); ubiquitin-protein ligase Belongs to Ubiquitin conjugating enzyme family. Gene expression is developmentally regulated. Identical to Ubiquitin-conjugating enzyme E2-21 kDa 1 (EC 6.3.2.19) (Ubiquitin- protein ligase 4
MSGI1_4830	TC19658	101.4	5.2	0.7	0	-4.3	0	7.2	0	not assigned.unknown	not assigned.unknown
MSGI1_15343	TC19660	6.9	8.4	78.1	4.4	0	-4.1	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_27899	TC19678	10.6	14.7	35.7	53.5	0	0	-1.8	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_10160	TC19680	0.3	0.3	16.7	14.7	0	0	-5.8	-5.6	not assigned.unknown	not assigned.unknown
MSGI1_27809	TC19682	26.6	41.4	95.8	38.4	0	-1.3	-1.8	0	protein.degradation.autophagy	"APG8A (autophagy 8A) Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of  vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced  carbon starvation. Pred"
MSGI1_4210	TC19694	4.1	1.2	99.2	24.6	0	-2	-4.6	-4.4	transport.peptides and oligopeptides	proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G54140.1); similar to Os06g0264500 [Oryza sativa (japonica cultivar-group)] (GB:NP_00105
MSGI1_13188	TC19734	0.8	23.2	3.3	15.3	4.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_1257	TC1974	27.9	25.3	6.8	20.4	0	0	2	0	cell.organisation	ankyrin repeat family protein  similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT5G07270.1); similar to ring zinc finger protein [Artemisia desertorum] (GB:AAY17949.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contain
MSGI1_6395	TC19755	0	0	14.7	50.2	0	1.8	-4.9	-6.6	amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase	"GAD2 (GLUTAMATE DECARBOXYLASE 2); calmodulin binding glutamate decarboxylase (GAD2) Identical to Glutamate decarboxylase 2 (EC 4.1.1.15) (GAD 2) (GAD2) [Arabidopsis Thaliana] (GB:Q42472); similar to GAD (Glutamate decarboxylase 1), calmodulin binding [Ar"
MSGI1_26433	TC19777	5.9	20.5	2.3	3	0	0	0	2.8	not assigned.unknown	not assigned.unknown
MSGI1_6844	TC19778	22	4.3	7.5	5.5	-2.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_15254	TC19782	35.3	20.6	11.4	18.6	0	0	1.6	0	stress.abiotic.drought/salt	dehydration-responsive family protein  similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G06050.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G77260.1); similar to dehydration-respon
MSGI1_25581	TC19786	48.1	21.9	14.6	25.5	0	0	1.7	0	nucleotide metabolism.phosphotransfer and pyrophosphatases.nucleoside diphosphate kinase	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2); ATP binding / nucleoside diphosphate kinase Maintains intracellular dNTP levels except ATP. Plays a role in response to oxidative stress and UV. Involved in phytochrome-mediated light signaling. Participates in au
MSGI1_18622	TC19807	89.6	51.8	30.2	56.3	0	0	1.6	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S19 (RPS19A)  Identical to 40S ribosomal protein S19-1 (RPS19A) [Arabidopsis Thaliana] (GB:Q9SGA6); similar to 40S ribosomal protein S19 (RPS19B) [Arabidopsis thaliana] (TAIR:AT5G15520.1); similar to Ribosomal protein S19e [Medicago
MSGI1_29562	TC19809	27.1	58.7	29.1	33.2	1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_6129	TC19810	35.2	24.9	12.8	28.1	0	0	1.5	0	minor CHO metabolism.others	"L-galactose dehydrogenase (L-GalDH) Encodes a L-galactose dehydrogenase, involved in ascorbate biosynthesis similar to AGD2 (ARF-GAP DOMAIN 2), aldo-keto reductase [Arabidopsis thaliana] (TAIR:AT1G60680.1); similar to galactose dehydrogenase [Actinidia d"
MSGI1_21136	TC19823	15.2	54.4	27.5	25.4	1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_2679	TC19828	0.5	0.7	29.4	35.7	0	0	-5.9	-5.7	transport.amino acids	
MSGI1_18285	TC19831	14.1	8.2	33.7	8.8	0	-1.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_56788	TC19835	5.9	22.7	28.1	17.9	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_16911	TC19843	89.6	144.5	38.1	82.2	0	1.1	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_6689	TC19844	9	33.8	13.3	15.5	1.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_17562	TC19850	11.1	13.7	38.9	9	0	-2.1	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_12148	TC19854	45	15	0.1	0	-1.6	0	8.8	4.9	not assigned.unknown	not assigned.unknown
MSGI1_7529	TC19856	64.8	29.5	31.9	31	-1.1	0	1	0	mitochondrial electron transport / ATP synthesis.F1-ATPase	"ATP synthase D chain-related  Identical to ATP synthase D chain, mitochondrial (EC 3.6.3.14) [Arabidopsis Thaliana] (GB:Q9FT52;GB:Q8RW89;GB:Q8W039); similar to ATP synthase D chain, mitochondrial, putative [Solanum demissum] (GB:AAT40531.1); contains dom"
MSGI1_18492	TC19861	6	7.7	31.8	7.4	0	-2.1	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_9891	TC19862	21.4	60.5	6.1	7.1	1.5	0	0	3.1	transport.metal	ZIP1 (ZINC TRANSPORTER 1 PRECURSOR); zinc ion transporter A member of Zrt- and Irt-related protein (ZIP) family.  transcript is induced in response to zinc deficiency in the root. Identical to Zinc transporter 1 precursor (ZRT/IRT-like protein 1) (ZIP1)
MSGI1_42086	TC19871	8.8	23.4	2	0.1	0	0	0	7.9	stress.abiotic.unspecified	major latex protein-related / MLP-related  similar to major latex protein-related / MLP-related [Arabidopsis thaliana] (TAIR:AT1G23120.1); similar to putative Bet v I family protein [Cicer arietinum] (GB:CAG34224.1); contains InterPro domain Bet v I aller
MSGI1_20040	TC19873	17.2	5.5	1.5	5.4	0	0	3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_23859	TC19876	6	5.9	58.4	8.3	0	-2.8	-3.3	0	transport.ABC transporters and multidrug resistance systems	ABC transporter family protein  Identical to Probable white-brown complex homolog protein 28 (WBC28) [Arabidopsis Thaliana] (GB:Q9FT51); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT5G06530.1); similar to Putative ABC transport
MSGI1_24996	TC19879	36.4	26.7	75.1	15.3	0	-2.3	-1	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE); DNA binding / transcription factor Rav2 is part of a complex that has been named `regulator of the (H+)-ATPase of the vacuolar and endosomal membranes' (RAVE) similar to AP2 domain-containing trans
MSGI1_15098	TC19912	3.9	3	19.2	26.8	0	0	0	-3.2	secondary metabolism.phenylpropanoids	"aminotransferase class I and II family protein  similar to AAT/ATAAT/MEE17 (maternal effect embryo arrest 17), aspartate transaminase [Arabidopsis thaliana] (TAIR:AT2G22250.3); similar to Os09g0453800 [Oryza sativa (japonica cultivar-group)] (GB:NP_00106"
MSGI1_57369	TC19920	30.4	61.3	28.8	82.2	0	1.5	0	0	cell.organisation	"similar to ATMAP65-6, microtubule binding [Arabidopsis thaliana] (TAIR:AT2G01910.1); similar to putative microtubule-associated protein MAP65-1a [Oryza sativa (japonica cultivar-group)] (GB:BAD37971.1); contains InterPro domain MAP65/ASE1; (InterPro:IP"
MSGI1_7528	TC19926	4.6	21.5	0.4	0.7	2.2	0	0	4.9	not assigned.unknown	not assigned.unknown
MSGI1_7417	TC19929	5.2	0.2	61	3.5	0	-4.1	-3.6	0	secondary metabolism.flavonoids.anthocyanins	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT5G05600.1); similar to 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABE94015.1); contains InterPro domain"
MSGI1_7417	TC19929	5.2	0.2	61	3.5	0	-4.1	-3.6	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_50567	TC1993	6.6	11	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_20218	TC19933	2.7	6.7	42	63.4	0	0	-4	-3.2	cell wall.pectin*esterases.PME	"C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1); pectinesterase inhibitor Plant cell wall (CWI) and vacuolar invertases (VI)  play important roles in carbohydrate metabolism, stress responses  and sugar signaling. similar to invertase inhibitor"
MSGI1_20218	TC19933	2.7	6.7	42	63.4	0	0	-4	-3.2	misc.invertase/pectin methylesterase inhibitor family protein	"C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1); pectinesterase inhibitor Plant cell wall (CWI) and vacuolar invertases (VI)  play important roles in carbohydrate metabolism, stress responses  and sugar signaling. similar to invertase inhibitor"
MSGI1_45036	TC19934	34	126.9	67.5	111.8	1.9	0	0	0	RNA.regulation of transcription.bZIP transcription factor family	GBF6 (G-box binding factor 6); DNA binding / transcription factor Encodes a basic domain leucine zipper (bZip) transcription factor. similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G75390.1); similar to cAMP response e
MSGI1_27898	TC19942	8.2	17.5	32	10.8	0	0	-2	0	transport.amino acids	amino acid transporter family protein  similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT2G40420.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABE86055.1); contains InterPro domain Amino acid/p
MSGI1_16307	TC19963	19.4	30.2	0.1	0	0	0	7.6	5.9	not assigned.unknown	not assigned.unknown
MSGI1_17105	TC19982	17.1	8.7	2.3	3.2	0	0	2.9	0	stress.abiotic.heat	DNAJ heat shock N-terminal domain-containing protein  similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G02100.1); similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:
MSGI1_28758	TC19987	14.5	9.1	33.2	8.6	0	-1.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_21064	TC19988	7.1	21.6	6.1	43.7	0	2.8	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	auxin-responsive family protein  similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G19840.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE79953.1); contains InterPro domain Auxin responsive SAUR protein;
MSGI1_62119	TC2	52.5	82.9	31	65.1	0	1.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_8292	TC20	91.6	85.6	17.4	16.1	0	0	2.4	2.4	cell wall	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_8292	TC20	91.6	85.6	17.4	16.1	0	0	2.4	2.4	protein.degradation.subtilases	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_4769	TC20010	11.2	15.8	0.3	0.3	0	0	5.2	5.7	protein.targeting.chloroplast	TOC159 (translocon outer membrane complex 159) An integral membrane GTPase that functions as a transit-sequence receptor required for the import of proteins necessary for chloroplast biogenesis. Located in the outer chloroplast membrane. similar to ATTOC
MSGI1_29479	TC20027	0.8	5.6	33.6	9.3	0	-1.9	-5.4	0	transport.misc	"MATE efflux family protein  similar to ALF5 (ABERRANT LATERAL ROOT FORMATION 5), antiporter/ transporter [Arabidopsis thaliana] (TAIR:AT3G23560.1); similar to hypothetical membrane protein-1 [Marchantia polymorpha] (GB:BAB71817.1); similar to Os07g050220"
MSGI1_3936	TC20028	11.7	14.3	1.2	1.4	0	0	0	3.4	not assigned.unknown	not assigned.unknown
MSGI1_72155	TC20032	3.7	13.9	0.8	0.2	0	0	0	6.1	not assigned.unknown	not assigned.unknown
MSGI1_8004	TC20035	8.6	5.2	34.5	1.9	0	-4.2	-2	0	signalling.receptor kinases.DUF 26	"protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23150.1); similar to CRK10 (CYSTEINE-RICH RLK10), kinase [Arabidopsis thaliana] (TAIR:AT4G23180.1); similar to CRK6 (CYSTEINE-RICH RLK 6), kinase [Ar"
MSGI1_5198	TC20038	0	0	55	111.5	0	1	-6.8	-7.8	not assigned.unknown	not assigned.unknown
MSGI1_14404	TC20041	0.1	0	33.1	8.8	0	-1.9	-8.4	0	cell wall	disease resistance family protein / LRR family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT5G27060.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT2G15080.2); similar to disease res
MSGI1_14404	TC20041	0.1	0	33.1	8.8	0	-1.9	-8.4	0	stress.biotic	disease resistance family protein / LRR family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT5G27060.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT2G15080.2); similar to disease res
MSGI1_14124	TC2005	92.5	31.6	48.5	46	-1.5	0	0	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"30S ribosomal protein S13, chloroplast (CS13)  Identical to 30S ribosomal protein S13, chloroplast precursor (CS13) (RPS13) [Arabidopsis Thaliana] (GB:P42732;GB:Q9LY97); similar to 30S ribosomal protein S13, chloroplast, putative [Arabidopsis thaliana] ("
MSGI1_50801	TC20058	18.9	69.2	4.5	5.8	1.9	0	0	3.6	"misc.oxidases - copper, flavone etc."	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_24188	TC20066	167.3	72.5	42.7	63.4	-1.2	0	2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L28 (RPL28C)  Identical to 60S ribosomal protein L28-2 (RPL28C) [Arabidopsis Thaliana] (GB:Q9M0E2); similar to 60S ribosomal protein L28 (RPL28A) [Arabidopsis thaliana] (TAIR:AT2G19730.3); similar to unknown [Solanum tuberosum] (GB:A
MSGI1_28649	TC20071	3.7	10.1	19.5	6.5	0	0	-2.4	0	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G10650.2); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE80412.1); contains InterPro domain Zinc fi"
MSGI1_9588	TC20073	23.2	15.5	5.4	5.5	0	0	2.1	0	protein.synthesis.elongation	"nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative  Identical to Nascent polypeptide-associated complex subunit alpha-like protein 1 (NAC-alpha-like protein 1) (Alpha-NAC-like protein 1) [Arabidopsis Thaliana] (GB:"
MSGI1_39225	TC20078	21.7	3.7	6.9	3.6	-2.6	0	0	0	cell wall.cellulose synthesis	"ATCSLC05 (Cellulose synthase-like C5); transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLC08 (Cellulose synthase-like C8), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G246"
MSGI1_25819	TC20089	5	7.5	25.1	4.6	0	-2.4	-2.3	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_25819	TC20089	5	7.5	25.1	4.6	0	-2.4	-2.3	0	protein.postranslational modification	"CIPK2 (CBL-INTERACTING PROTEIN KINASE 2); kinase Encodes CBL-interacting protein kinase 2 (CIPK2). similar to CIPK10 (CBL-INTERACTING PROTEIN KINASE 10), kinase [Arabidopsis thaliana] (TAIR:AT5G58380.1); similar to CBL-interacting protein kinase 2 [Popul"
MSGI1_25819	TC20089	5	7.5	25.1	4.6	0	-2.4	-2.3	0	cell wall	"CIPK2 (CBL-INTERACTING PROTEIN KINASE 2); kinase Encodes CBL-interacting protein kinase 2 (CIPK2). similar to CIPK10 (CBL-INTERACTING PROTEIN KINASE 10), kinase [Arabidopsis thaliana] (TAIR:AT5G58380.1); similar to CBL-interacting protein kinase 2 [Popul"
MSGI1_97269	TC20116	27.2	23.8	0	0.3	0	0	5.8	6.3	not assigned.unknown	not assigned.unknown
MSGI1_28363	TC20119	0	0	18.2	31.2	0	0	-5.2	-6	not assigned.unknown	not assigned.unknown
MSGI1_7934	TC20130	0.3	0.3	102	92.4	0	0	-8.4	-8.3	not assigned.unknown	not assigned.unknown
MSGI1_117655	TC20136	21.3	34	4.6	10.4	0	0	2.2	1.7	not assigned.unknown	not assigned.unknown
MSGI1_11741	TC20138	6.6	8.9	29.6	8.4	0	-1.8	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_17980	TC2014	6.7	5.7	29.7	32	0	0	-2.1	-2.5	not assigned.unknown	not assigned.unknown
MSGI1_25096	TC2015	0.1	0	36.3	34.7	0	0	-8.5	-6.1	not assigned.unknown	not assigned.unknown
MSGI1_40241	TC20151	0.3	0.6	7.8	13	0	0	0	-4.4	protein.postranslational modification	"serine/threonine protein kinase, putative  similar to CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1), kinase/ protein threonine/tyrosine kinase [Arabidopsis thaliana] (TAIR:AT5G03730.1); similar to OSIGBa0152L12.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67"
MSGI1_13268	TC20153	24.8	2.4	45.4	3.7	-3.4	-3.6	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_43401	TC20158	2.1	7.1	27.2	21.1	0	0	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_17930	TC20161	14.2	20.8	1.5	2.3	0	0	3.2	3.2	RNA.regulation of transcription.WRKY domain transcription factor family	TTR1 (WRKY domain family protein 16); transcription factor Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. Identical to Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16)
MSGI1_17930	TC20161	14.2	20.8	1.5	2.3	0	0	3.2	3.2	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G17680.1); similar to TIR-NBS type disease resistance protein [Populus trichocarpa] (GB:ABF81459"
MSGI1_30863	TC20169	4.7	2.3	224.3	1.1	0	-7.7	-5.6	0	not assigned.unknown	not assigned.unknown
MSGI1_9331	TC20180	10.9	17.4	0	0.1	0	0	4.4	7.4	not assigned.unknown	not assigned.unknown
MSGI1_8147	TC20182	10.5	35.8	3.9	3.3	1.8	0	0	3.4	not assigned.unknown	not assigned.unknown
MSGI1_11083	TC20198	31.3	23.1	0.6	0.4	0	0	5.7	5.9	not assigned.unknown	not assigned.unknown
MSGI1_4305	TC2020	222.9	42.4	107.4	15.7	-2.4	-2.8	1.1	1.4	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G38180.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE91665.1); contains InterPro domain Lipolytic en"
MSGI1_17723	TC20202	7.2	18.9	36.6	15	0	0	-2.3	0	stress.abiotic	ATOSM34 (OSMOTIN 34) osmotin-like protein Identical to Osmotin-like protein OSM34 precursor (OSM34) [Arabidopsis Thaliana] (GB:P50700;GB:Q9T0D2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75050.1); similar to osmotin-like protein I [Gos
MSGI1_17723	TC20202	7.2	18.9	36.6	15	0	0	-2.3	0	cell wall	ATOSM34 (OSMOTIN 34) osmotin-like protein Identical to Osmotin-like protein OSM34 precursor (OSM34) [Arabidopsis Thaliana] (GB:P50700;GB:Q9T0D2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75050.1); similar to osmotin-like protein I [Gos
MSGI1_41510	TC20206	15.4	5.9	24.2	26.4	0	0	0	-2.2	cell wall.degradation.pectate lyases and polygalacturonases	"polygalacturonase  similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT1G70500.1); similar to polygalacturonase [Cucumis sativus] (GB:BAA88472.1); contains InterPro domain Virulence factor, pectin lyase fold; (Inte"
MSGI1_37242	TC20207	17.3	23.4	13.7	37.1	0	1.4	0	0	nucleotide metabolism.synthesis.purine.amidophosphoribosyltransferase	"ATASE2/ATD2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2); amidophosphoribosyltransferase Encodes glutamine 5-phosphoribosylpyrophosphate amidotransferase. Mutants are deficient in leaf, but not cotyledon, plastid and palisade cell development. M"
MSGI1_3236	TC2021	10.6	17.7	48.7	12.8	0	-1.9	-2.2	0	transport.ABC transporters and multidrug resistance systems	"PGP21 (P-GLYCOPROTEIN 21); ATPase, coupled to transmembrane movement of substances  Identical to Multidrug resistance protein 17 (P-glycoprotein 21) (MDR17) [Arabidopsis Thaliana] (GB:Q9M1Q9); similar to PGP11 (P-GLYCOPROTEIN 11), ATPase, coupled to tran"
MSGI1_13601	TC20218	43.2	151.6	57.2	27.2	1.8	0	0	2.5	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G46620.1); similar to Zinc finger, RING-type; Thioredoxin-related; RINGv [Medicago truncatula] (GB:ABE8198"
MSGI1_41892	TC20220	35.7	18.1	9.6	18.9	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_26773	TC20226	30.1	9.1	12.4	48.7	-1.7	2	0	-2.4	secondary metabolism.flavonoids.flavonols	"UGT73C6 (UDP-glucosyl transferase 73C6); UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups The At2g36790 gene encodes a UDP-glucose:flavonol-3-O-glycoside-7-O-glucosyltransferase (UGT73C6)attaching a glucosyl res"
MSGI1_63911	TC20234	4.5	30.1	23.5	27.8	2.7	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_35674	TC20243	6.8	19.2	46.9	27.4	0	0	-2.8	0	stress.biotic	"ADR1-L1 (ADR1-LIKE 1); ATP binding / protein binding  Identical to Probable disease resistance protein At4g33300 [Arabidopsis Thaliana] (GB:Q9SZA7;GB:Q56WJ3); similar to ADR1-L2 (ADR1-LIKE 2), ATP binding / nucleoside-triphosphatase/ nucleotide binding /"
MSGI1_28005	TC20247	30.5	74.5	18	57.4	1.3	1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_5932	TC2025	19	18.1	54.8	25.7	0	0	-1.5	0	protein.synthesis.release	ERF1-3 (EUKARYOTIC RELEASE FACTOR 1-3); translation release factor  Identical to Eukaryotic peptide chain release factor subunit 1-3 (eRF1-3) (Eukaryotic release factor 1-3) (Omnipotent suppressor protein 1 homolog 3) (SUP1 homolog 3) (ERF1-3) [Arabidops
MSGI1_8370	TC20257	11.3	19.5	115.7	3.6	0	-5	-3.4	2.4	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_14084	TC20259	1.3	15.1	19.3	6.7	3.5	0	-3.9	0	RNA.regulation of transcription.C3H zinc finger family	"zinc finger (CCCH-type) family protein  similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT4G29190.1); similar to Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE91976.1); contains InterPro domain Zinc finger, CCCH-type;"
MSGI1_16455	TC20261	3.6	63.7	3.2	1.4	4.1	0	0	5.5	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_5268	TC20265	15.1	14.8	0.4	1.2	0	0	5.2	3.6	protein.aa activation.lysine-tRNA ligase	"lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative  Identical to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) [Arabidopsis Thaliana] (GB:Q9ZPI1); similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Ar"
MSGI1_53850	TC20268	45.7	2.3	6.3	3.8	-4.3	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_10901	TC20279	52.2	1.2	9.9	0.6	-5.4	0	2.4	0	hormone metabolism.salicylic acid.synthesis-degradation	UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G05670.1); similar to UDP-xylose phenolic glycosyltransferase [Solanum lycopersicum] (GB:CAI62049
MSGI1_20132	TC20283	45	0.3	5.8	0.3	-7.2	0	3	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G62510.1); similar to 14 kDa polypeptide [Catharanthus rose
MSGI1_6232	TC20287	14.9	10.6	0	0	0	0	4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_16509	TC2029	197.4	79.6	40.3	61.8	-1.3	0	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_41509	TC20297	6.3	18.3	26.7	8.7	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_6018	TC203	1294.5	872.6	519.3	1347.5	0	1.4	1.3	0	PS.lightreaction.photosystem II.LHC-II	LHCB2.1 (Photosystem II light harvesting complex gene 2.1); chlorophyll binding Lhcb2.1 protein encoding a subunit of the light harvesting complex II. Member of a gene family with high degree of sequence similarity. Initially LHCB2.3 was considered as a
MSGI1_26502	TC20302	0	0	19.9	38.2	0	0	-5.3	-6.3	not assigned.unknown	not assigned.unknown
MSGI1_14701	TC2031	101.4	50.9	25.7	50.1	0	0	2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L17 (RPL17A)  Identical to 60S ribosomal protein L17-1 (RPL17A) [Arabidopsis Thaliana] (GB:Q93VI3;GB:Q9FZJ5); similar to 60S ribosomal protein L17 (RPL17B) [Arabidopsis thaliana] (TAIR:AT1G67430.1); similar to ribosomal protein [Pet
MSGI1_25894	TC20320	1.4	12.2	20.6	8.7	0	0	-3.9	0	transport.p- and v-ATPases	"AHA4 (Arabidopsis H(+)-ATPase 4); ATPase mutant has Slight reduction in root and shoot growth; Exaggerated defects in salt stress; Plasma Membrane H+ ATPase Identical to ATPase 4, plasma membrane-type (EC 3.6.3.6) (Proton pump 4) (AHA4) [Arabidopsis Thal"
MSGI1_87741	TC20321	7.1	10.3	207.1	18.4	0	-3.5	-4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_24101	TC20325	23	6.8	107.1	53.4	0	0	-2.2	-3	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_24101	TC20325	23	6.8	107.1	53.4	0	0	-2.2	-3	misc.plastocyanin-like	plastocyanin-like domain-containing protein  similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G07475.1); similar to blue copper-binding protein homolog [Triticum aestivum] (GB:AAD10251.1); contains InterPro domain Cup
MSGI1_66094	TC20329	115.9	76.9	42.9	91.2	0	1.1	1.4	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S3 (RPS3C)  Identical to 40S ribosomal protein S3-3 (RPS3C) [Arabidopsis Thaliana] (GB:Q9FJA6); similar to 40S ribosomal protein S3 (RPS3A) [Arabidopsis thaliana] (TAIR:AT2G31610.1); similar to ribosomal protein S3 [Medicago truncat
MSGI1_15152	TC2034	22.6	37.7	54.1	29.6	0	0	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_46599	TC20340	1.7	14.7	0.2	2.6	3.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_11113	TC20357	7.8	4.9	34.1	10.3	0	-1.7	-2.1	0	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	"lipase family protein  Identical to Triacylglycerol lipase 2 precursor (EC 3.1.1.3) (LIP2) [Arabidopsis Thaliana] (GB:Q67ZU1;GB:Q681B0;GB:Q6VY31;GB:Q94AE7;GB:Q9FMT2;GB:Q9FMT3); similar to ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1), galactolipase/ hydrolase/"
MSGI1_13946	TC2036	49	29.6	16.5	36.5	0	0	1.6	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L12 (RPL12C)  Identical to 60S ribosomal protein L12-3 (RPL12C) [Arabidopsis Thaliana] (GB:Q9FF52); similar to 60S ribosomal protein L12 (RPL12B) [Arabidopsis thaliana] (TAIR:AT3G53430.1); similar to 60S ribosomal protein L12 [Capsic
MSGI1_19740	TC20362	46.8	6.8	19.9	21.4	-2.8	0	1.2	0	redox.peroxiredoxin	"peroxiredoxin Q, putative encodes periredoxin Q which decomposes peroxides and plays a role in the protection of the photosynthetic apparatus similar to 2-cys peroxiredoxin, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT5G06290.1); similar to pero"
MSGI1_40240	TC20372	8.8	8.1	27.4	41.2	0	0	0	-2.3	TCA / org. transformation.TCA.aconitase	"aconitase family protein / aconitate hydratase family protein  similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT4G26970.1); similar to 3-isopropylmalate dehydratase large subun"
MSGI1_40240	TC20372	8.8	8.1	27.4	41.2	0	0	0	-2.3	TCA / org. transformation.other organic acid transformaitons.aconitase	"aconitase family protein / aconitate hydratase family protein  similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT4G26970.1); similar to 3-isopropylmalate dehydratase large subun"
MSGI1_9760	TC20391	23.5	6	6.2	2.6	-2	0	1.9	0	signalling.calcium	calcium-binding EF hand family protein  similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G28830.1); similar to 39 kDa EF-Hand containing protein [Solanum tuberosum] (GB:CAA04670.1); contains InterPro domain EF-Hand type; (
MSGI1_23747	TC20398	31.5	4.6	36	13.8	-2.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_2672	TC204	793.6	541.1	448.3	979.8	0	1.1	0	0	PS.lightreaction.photosystem II.LHC-II	LHCB2.1 (Photosystem II light harvesting complex gene 2.1); chlorophyll binding Lhcb2.1 protein encoding a subunit of the light harvesting complex II. Member of a gene family with high degree of sequence similarity. Initially LHCB2.3 was considered as a
MSGI1_49845	TC20407	20.1	27.9	54.6	41.2	0	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_11112	TC2041	59.4	18.5	10.5	14.2	-1.7	0	2.5	0	lipid metabolism.FA synthesis and FA elongation.ACP protein	ACP4 (ACYL CARRIER PROTEIN 4) encodes an acyl carrier protein predominantly expressed in leaves. Gene expression is upregulated by light. similar to ACP1 (ACYL CARRIER PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G05020.1); similar to acyl carrier protein [
MSGI1_36352	TC20412	3.8	16.2	52.8	52.5	0	0	-3.8	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_9619	TC20414	13.1	18.2	0.1	0	0	0	7	5.2	stress.abiotic.heat	HSP70 (heat shock protein 70); ATP binding  similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G
MSGI1_31110	TC20418	15.7	1.9	5.1	2	-3	0	0	0	signalling.calcium	"IQD11 (IQ-domain 11); calmodulin binding  similar to IQD12 (IQ-domain 12), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G03960.1); similar to Os03g0355700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050136.1); similar to IQ calmodulin-bindin"
MSGI1_16198	TC20429	1.4	14.3	1.3	9.7	3.4	0	0	0	cell.organisation	"microtubule motor  similar to ATK4 (ARABIDOPSIS THALIANA KINESIN 4), microtubule motor [Arabidopsis thaliana] (TAIR:AT5G27000.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT3G44730.1); similar to kinesin motor protein-related"
MSGI1_3785	TC2043	6.6	34.6	17	41.8	2.4	1.3	0	0	cell wall.degradation.pectate lyases and polygalacturonases	pectate lyase family protein  Identical to Probable pectate lyase 18 precursor (EC 4.2.2.2) (Pectate lyase A10) [Arabidopsis Thaliana] (GB:Q9C5M8;GB:O23667;GB:Q8LAW7;GB:Q9SB71); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT1G677
MSGI1_9759	TC20440	9.3	15.9	2.7	1.9	0	0	0	3.1	RNA.processing.ribonucleases	"XRN2 (EXORIBONUCLEASE 2); 5'-3' exonuclease/ nucleic acid binding Encodes a putative exoribonuclease. similar to AIN1 (ACC INSENSITIVE 1), 5'-3' exonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G54490.1); similar to XRN3 (5'-3' exoribonu"
MSGI1_21947	TC20447	10.2	10.9	43.3	13.1	0	-1.7	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_46967	TC20463	7.7	27.8	4.2	3.3	1.9	0	0	3.1	not assigned.unknown	not assigned.unknown
MSGI1_34005	TC20471	52.5	19.7	14	26.2	-1.4	0	1.9	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S21 (RPS21C)  Identical to 40S ribosomal protein S21-2 (RPS21C) [Arabidopsis Thaliana] (GB:Q3E902); similar to 40S ribosomal protein S21 (RPS21B) [Arabidopsis thaliana] (TAIR:AT3G53890.2); similar to Ribosomal protein S21e [Medicago
MSGI1_9165	TC20479	5	30.7	5.9	16.6	2.6	0	0	0	cell wall	"glycosyl hydrolase family 9 protein  Identical to Endoglucanase 9 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 9) (Cellulase 3) (AtCEL3) (CEL3) [Arabidopsis Thaliana] (GB:Q9C9H5;GB:P80855;GB:Q38817;GB:Q8LDE8); similar to glycosyl hydrolase family 9 pr"
MSGI1_9165	TC20479	5	30.7	5.9	16.6	2.6	0	0	0	"misc.gluco-, galacto- and mannosidases"	"glycosyl hydrolase family 9 protein  Identical to Endoglucanase 9 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 9) (Cellulase 3) (AtCEL3) (CEL3) [Arabidopsis Thaliana] (GB:Q9C9H5;GB:P80855;GB:Q38817;GB:Q8LDE8); similar to glycosyl hydrolase family 9 pr"
MSGI1_856	TC2048	17.9	45.8	17.8	27.1	1.4	0	0	0	transport.ABC transporters and multidrug resistance systems	ABC transporter family protein  Identical to White-brown complex homolog protein 14 (WBC14) [Arabidopsis Thaliana] (GB:Q9C6W5;GB:Q9C6R7); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT4G27420.1); similar to ABC transporter-like
MSGI1_43400	TC205	353.4	250.5	140.2	326.6	0	1.2	1.3	0	PS.lightreaction.photosystem II.LHC-II	LHCB2:4 (Photosystem II light harvesting complex gene 2.3); chlorophyll binding Encodes Lhcb2.4.  Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynt
MSGI1_3188	TC2051	45.4	2.9	57.2	4.5	-4	-3.7	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_3188	TC2051	45.4	2.9	57.2	4.5	-4	-3.7	0	0	secondary metabolism.flavonoids.dihydroflavonols	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G10490.1); similar to 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABE85154.1); contains InterPro domain"
MSGI1_25292	TC20514	2.3	4.5	46.9	11	0	-2.1	-4.3	0	misc.cytochrome P450	"CYP81D3 (cytochrome P450, family 81, subfamily D, polypeptide 3); oxygen binding member of CYP81D similar to CYP81D2 (cytochrome P450, family 81, subfamily D, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37360.1); similar to CYP81D8 (c"
MSGI1_34585	TC20519	42.8	34.9	4.2	16.9	0	0	3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_12394	TC2052	84.2	36.6	142.7	41	-1.2	-1.8	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_12394	TC2052	84.2	36.6	142.7	41	-1.2	-1.8	0	0	stress.abiotic.cold	universal stress protein (USP) family protein  similar to universal stress protein (USP) family protein / early nodulin ENOD18 family protein [Arabidopsis thaliana] (TAIR:AT3G03270.2); similar to Os05g0157200 [Oryza sativa (japonica cultivar-group)] (GB:N
MSGI1_27449	TC20524	1	4.7	51.1	10.4	0	-2.3	-5.7	0	not assigned.unknown	not assigned.unknown
MSGI1_12280	TC20530	2.4	9.2	9.4	30.3	0	1.7	0	-1.7	"RNA.regulation of transcription.CCAAT box binding factor family, HAP2"	"HAP2C (Heme activator protein (yeast) homolog 2C); transcription factor Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is express"
MSGI1_12393	TC2054	77.9	4.4	32.6	3.4	-4.1	-3.3	1.3	0	DNA.repair	methyladenine glycosylase family protein  similar to methyladenine glycosylase family protein [Arabidopsis thaliana] (TAIR:AT5G44680.1); similar to Methyladenine glycosylase [Medicago truncatula] (GB:ABE81339.1); contains InterPro domain Methyladenine gly
MSGI1_6711	TC2055	17.9	3.9	2.9	5	0	0	2.6	0	protein.degradation.serine protease	"SCPL18 (serine carboxypeptidase-like 18); serine carboxypeptidase  similar to SCPL7, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G10450.1); similar to 1-O-sinapoylglucose:choline sinapoyltransferase [Brassica napus] (GB:AAQ91191.1); contains"
MSGI1_6711	TC2055	17.9	3.9	2.9	5	0	0	2.6	0	cell wall	"SCPL18 (serine carboxypeptidase-like 18); serine carboxypeptidase  similar to SCPL7, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G10450.1); similar to 1-O-sinapoylglucose:choline sinapoyltransferase [Brassica napus] (GB:AAQ91191.1); contains"
MSGI1_2141	TC2056	28.9	7	6	6.9	-2	0	2.3	0	protein.degradation.serine protease	"SCPL2 (serine carboxypeptidase-like 2); serine carboxypeptidase  similar to SCPL3 (serine carboxypeptidase-like 3), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT1G73280.1); similar to SCPL1 (serine carboxypeptidase-like 1), serine carboxypeptid"
MSGI1_2141	TC2056	28.9	7	6	6.9	-2	0	2.3	0	cell wall	"SCPL2 (serine carboxypeptidase-like 2); serine carboxypeptidase  similar to SCPL3 (serine carboxypeptidase-like 3), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT1G73280.1); similar to SCPL1 (serine carboxypeptidase-like 1), serine carboxypeptid"
MSGI1_57040	TC20562	11.2	4.5	32.5	2.5	0	-3.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_23746	TC20575	6.9	3.2	16.8	2.2	0	-2.9	0	0	signalling.receptor kinases.DUF 26	"protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23150.1); similar to CRK10 (CYSTEINE-RICH RLK10), kinase [Arabidopsis thaliana] (TAIR:AT4G23180.1); similar to CRK6 (CYSTEINE-RICH RLK 6), kinase [Ar"
MSGI1_25973	TC20578	0.5	27.7	13.9	1.4	5.8	-3.3	-4.8	4.3	not assigned.unknown	not assigned.unknown
MSGI1_35264	TC20581	1.8	3.8	18.6	3.2	0	-2.5	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_11846	TC20583	6	13.3	0.2	0.3	0	0	0	5.5	not assigned.unknown	not assigned.unknown
MSGI1_19474	TC20594	134.1	10.6	43.1	2.1	-3.7	-4.4	1.6	0	stress.biotic	disease resistance-responsive family protein  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22900.1); similar to dirigent-like protein pDIR9 [Picea engelmannii x Picea glauca] (GB:ABD52120.1); contains InterPro domain Plant disease resistanc
MSGI1_2720	TC2060	81.5	228.9	267.7	88.3	1.5	-1.6	-1.7	1.4	not assigned.unknown	not assigned.unknown
MSGI1_74928	TC20600	6	7.1	15.1	31.6	0	0	0	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_15576	TC20604	6.1	6.4	26.5	11.5	0	0	-2.1	0	secondary metabolism.isoprenoids.mevalonate pathway.acetyl-CoA C-acyltransferase	"ACAT2/EMB1276 (ACETOACETYL-COA THIOLASE 2, EMBRYO DEFECTIVE 1276); acetyl-CoA C-acetyltransferase  Identical to Acetyl-CoA acetyltransferase, cytosolic 1 (EC 2.3.1.9) (Cytosolic acetoacetyl-CoA thiolase 1) (Thiolase 1) (AAT1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_15576	TC20604	6.1	6.4	26.5	11.5	0	0	-2.1	0	amino acid metabolism.degradation.aspartate family.lysine	"ACAT2/EMB1276 (ACETOACETYL-COA THIOLASE 2, EMBRYO DEFECTIVE 1276); acetyl-CoA C-acetyltransferase  Identical to Acetyl-CoA acetyltransferase, cytosolic 1 (EC 2.3.1.9) (Cytosolic acetoacetyl-CoA thiolase 1) (Thiolase 1) (AAT1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_15576	TC20604	6.1	6.4	26.5	11.5	0	0	-2.1	0	amino acid metabolism.degradation.aromatic aa.tryptophan	"ACAT2/EMB1276 (ACETOACETYL-COA THIOLASE 2, EMBRYO DEFECTIVE 1276); acetyl-CoA C-acetyltransferase  Identical to Acetyl-CoA acetyltransferase, cytosolic 1 (EC 2.3.1.9) (Cytosolic acetoacetyl-CoA thiolase 1) (Thiolase 1) (AAT1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_52801	TC20605	41.9	9.8	10.7	18.9	-2.1	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_26051	TC20612	31.1	10.8	126.1	12.7	0	-3.3	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_22022	TC20614	0.9	1.6	7.6	18.6	0	0	0	-3.5	not assigned.unknown	not assigned.unknown
MSGI1_36091	TC20623	17.6	40.7	12.4	11.8	0	0	0	1.8	stress.biotic	"NDR1 (NON RACE-SPECIFIC DISEASE RESISTANCE 1); signal transducer Required for non-race specific resistance to bacterial and fungal pathogens.Mediates systemic acquired resistance (SAR) response. similar to non-race specific disease resistance protein, pu"
MSGI1_34998	TC20631	5.2	2.9	43.6	4.5	0	-3.3	-3.1	0	nucleotide metabolism.synthesis.pyrimidine.CTP synthetase	"CTP synthase  similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT1G30820.1); similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT2G34890.1); similar to EMB2742 (EM"
MSGI1_35421	TC20634	0.1	0.6	18.4	16.2	0	0	-7.5	-4.8	hormone metabolism.auxin.induced-regulated-responsive-activated	"similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G64600.1); similar to putative auxin-independent growth promoter [Oryza sativa (japonica cultivar-group)] (GB:BAD37235.1); contains InterPro domain Protein of unknown function DUF246, plant; (I"
MSGI1_19938	TC20639	39	34	5.2	7.7	0	0	2.9	2.1	not assigned.unknown	not assigned.unknown
MSGI1_40239	TC20641	9.2	6.8	28.8	7.2	0	-2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_22462	TC20646	21.2	13	3.9	13	0	0	2.4	0	misc.UDP glucosyl and glucoronyl transferases	"UGT73B5 (UDP-glucosyl transferase 73B5); UDP-glycosyltransferase/ transferase, transferring glycosyl groups  similar to UGT73B4, UDP-glycosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G15490.1); similar to UGT7"
MSGI1_19473	TC20650	17.1	4.4	29.7	3.5	0	-3.1	0	0	hormone metabolism.brassinosteroid.synthesis-degradation.BRs.CPD	"CPD (CABBAGE 3); oxygen binding Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and cathasterone to teasterone in the early C6 oxidation pathwa"
MSGI1_28361	TC20668	0.7	0.7	17	18.9	0	0	-4.6	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_30359	TC2067	28.5	26.5	0.5	0	0	0	5.8	5.7	not assigned.unknown	not assigned.unknown
MSGI1_21133	TC20678	18.7	28.1	1.6	1.1	0	0	3.5	4.7	hormone metabolism.auxin.signal transduction	"PIN3 (PIN-FORMED 3); auxin:hydrogen symporter/ transporter A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 local"
MSGI1_26501	TC2070	117.3	52.5	59.6	86.7	-1.2	0	1	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S25 (RPS25B)  Identical to 40S ribosomal protein S25-2 (RPS25B) [Arabidopsis Thaliana] (GB:Q9SIK2); similar to 40S ribosomal protein S25 (RPS25E) [Arabidopsis thaliana] (TAIR:AT4G39200.1); similar to S25 ribosomal protein [Medicago t
MSGI1_13460	TC20718	45.2	12.8	15.3	7.5	-1.8	0	1.6	0	"metal handling.binding, chelation and storage"	"MAT3 (METHIONINE ADENOSYLTRANSFERASE 3); methionine adenosyltransferase  similar to SAM1 (S-adenosylmethionine synthetase 1), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT1G02500.2); similar to MTO3 (S-adenosylmethionine synthase 3), met"
MSGI1_13460	TC20718	45.2	12.8	15.3	7.5	-1.8	0	1.6	0	amino acid metabolism.synthesis.aspartate family.methionine.S-adenosylmethionine synthetase	"MAT3 (METHIONINE ADENOSYLTRANSFERASE 3); methionine adenosyltransferase  similar to SAM1 (S-adenosylmethionine synthetase 1), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT1G02500.2); similar to MTO3 (S-adenosylmethionine synthase 3), met"
MSGI1_24993	TC20726	17.5	56.6	8.4	16.4	1.7	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_54668	TC20727	11.1	4.4	0.3	0.3	0	0	5.2	0	not assigned.unknown	not assigned.unknown
MSGI1_20356	TC20732	4.3	11	0.3	0.2	0	0	0	5.8	not assigned.unknown	not assigned.unknown
MSGI1_37392	TC20773	3.6	8.2	45.9	10.4	0	-2.1	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_31234	TC20779	3.2	5.2	25.9	5.9	0	-2.1	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_4295	TC20789	0.5	0.1	25.7	19.3	0	0	-5.7	-7.6	cell wall	protein kinase family protein  similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G19130.1); similar to Protein kinase; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE87106.1); contain
MSGI1_4295	TC20789	0.5	0.1	25.7	19.3	0	0	-5.7	-7.6	signalling.receptor kinases.S-locus glycoprotein like	protein kinase family protein  similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G19130.1); similar to Protein kinase; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE87106.1); contain
MSGI1_4295	TC20789	0.5	0.1	25.7	19.3	0	0	-5.7	-7.6	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_62117	TC208	9.2	1.1	11.6	16.9	0	0	0	-3.9	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_33257	TC20817	59.6	22.9	21.1	27.4	-1.4	0	1.5	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S23 (RPS23B)  Identical to 40S ribosomal protein S23-2 (S12) (RPS23B) [Arabidopsis Thaliana] (GB:P49201;GB:Q9LYY9); similar to 40S ribosomal protein S23 (RPS23A) [Arabidopsis thaliana] (TAIR:AT3G09680.1); similar to Ribosomal protei
MSGI1_16909	TC20820	170.4	59.9	93.2	107.6	-1.5	0	0	0	protein.synthesis.mito/plastid ribosomal protein.unknown	"RPL12-C (RIBOSOMAL PROTEIN L12-C); structural constituent of ribosome 50S ribosomal protein L12-C Identical to 50S ribosomal protein L12-3, chloroplast precursor (CL12-C) (RPL12C) [Arabidopsis Thaliana] (GB:P36212;GB:Q9LK92); similar to RPL12-A (RIBOSOMA"
MSGI1_57962	TC20824	4.3	7.6	45.2	10.9	0	-2.1	-3.4	0	secondary metabolism.flavonoids.flavonols	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G25310.1); similar to putative ethylene-forming enzyme [Oryza sativa] (GB:AAL79802.1); contains InterPro d"
MSGI1_45515	TC20827	6.3	62.8	78.1	151.2	3.3	1	-3.6	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_93424	TC20833	118.7	38.8	43.1	30.8	-1.6	0	1.5	0	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2A.4 (HTA12) [Arabidopsis Thaliana] (GB:Q9LZ46); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT5G59870.1); similar to Histone H2A (GB:Q9M531); contains InterPro domain Histone-fold;"
MSGI1_23083	TC20837	4.8	7.6	34.6	7.6	0	-2.2	-2.8	0	RNA.regulation of transcription.bZIP transcription factor family	GBF3 (G-BOX BINDING FACTOR 3); transcription factor encodes a bZIP G-box binding protein whose expression is induced by ABA. It has been shown to bind to Adh that contains the G-box and is induced by cold and water deprivation. GBF3 has been shown to be
MSGI1_27897	TC20849	27.9	33.6	17.1	47.7	0	1.5	0	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase family protein  similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to lipoxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G72520.1); similar to LOX2 (LIPOXYGENASE 2) [Arabi"
MSGI1_35821	TC20866	11.3	3.7	29.5	5.6	0	-2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_54087	TC20874	71.4	33.7	30.3	27.1	-1.1	0	1.2	0	cell wall.precursor synthesis.UGD	"UDP-glucose 6-dehydrogenase, putative  similar to ATUGD1/UGD1 (UDP-glucose dehydrogenase 1), UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G26570.1); similar to UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G29360.2); similar"
MSGI1_50101	TC20881	29.3	72.1	62.2	71.6	1.3	0	-1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_28895	TC20884	3.9	4.6	48.2	17.7	0	-1.4	-3.6	0	misc.cytochrome P450	"CYP81D3 (cytochrome P450, family 81, subfamily D, polypeptide 3); oxygen binding member of CYP81D similar to CYP81D2 (cytochrome P450, family 81, subfamily D, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37360.1); similar to CYP81D8 (c"
MSGI1_36937	TC20893	24.4	11	0.6	0.8	0	0	5.3	0	not assigned.unknown	not assigned.unknown
MSGI1_260	TC209	110.2	140.3	61.1	239.5	0	2	0	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_54667	TC20902	3.2	25.8	13	21.4	3	0	0	0	transport.ABC transporters and multidrug resistance systems	"ABC transporter family protein  Identical to Multidrug resistance protein 13 (P-glycoprotein 15) (MDR13) [Arabidopsis Thaliana] (GB:Q9LHD1); similar to PGP18 (P-GLYCOPROTEIN 18), ATPase, coupled to transmembrane movement of substances [Arabidopsis thalia"
MSGI1_16305	TC2092	65.9	26.2	8.6	13.1	-1.3	0	2.9	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_45033	TC20932	0	0.1	12.7	7.6	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_74927	TC20934	5.6	7.6	31.5	5.8	0	-2.4	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_947	TC2094	8.7	10.2	30.7	13	0	0	-1.8	0	protein.degradation	protease-associated (PA) domain-containing protein  similar to peptidase [Arabidopsis thaliana] (TAIR:AT1G01650.1); similar to growth-on protein GRO10 [Euphorbia esula] (GB:AAL14629.1); similar to putative growth-on protein GRO10 [Oryza sativa (japonica
MSGI1_8995	TC2096	16.8	25.7	62.7	151.7	0	1.3	-1.9	-2.6	not assigned.unknown	not assigned.unknown
MSGI1_16960	TC2097	278.2	362.6	0.6	0.3	0	0	8.9	10.2	not assigned.unknown	not assigned.unknown
MSGI1_2332	TC2098	22.4	42.1	15.4	14.6	0	0	0	1.5	protein.degradation.ubiquitin.E3.RING	copine-related  similar to copine-related [Arabidopsis thaliana] (TAIR:AT5G14420.2); similar to Os08g0135400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060941.1); similar to hypothetical protein S250_18C08.19 [Sorghum bicolor] (GB:AAL73530.1); co
MSGI1_27895	TC20994	9.2	12	69.1	15.6	0	-2.1	-2.9	0	stress.biotic	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_27895	TC20994	9.2	12	69.1	15.6	0	-2.1	-2.9	0	cell wall	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_21543	TC21	37.4	83.9	84.3	65.2	1.2	0	-1.2	0	stress.abiotic.heat	ERD2/HSP70T-1 (EARLY-RESPONSIVE TO DEHYDRATION 2); ATP binding encodes a heat shock protein whose gene expression is induced by heat and dehydration. similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G0944
MSGI1_11959	TC21003	26.1	15.2	0	0	0	0	5.7	4.9	not assigned.unknown	not assigned.unknown
MSGI1_43830	TC21016	4.9	0.1	43.9	0.4	0	-6.8	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_35820	TC21017	9.4	9.3	26	6.9	0	-1.9	0	0	"misc.oxidases - copper, flavone etc."	FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1); monooxygenase FMO1 is required for full expression of TIR-NB-LRR?conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-indepen
MSGI1_22896	TC21020	87.1	42.4	24.5	36.4	-1	0	1.8	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_45513	TC21028	0	0.1	16.6	4.6	0	0	-5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_56242	TC21061	9.3	26.4	35.6	12.4	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_58587	TC21064	2.3	16.6	3.7	31.5	2.9	3.1	0	0	transport.phosphate	PHO1 (PHOSPHATE 1) mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains. Identical
MSGI1_48079	TC21090	32.7	0.4	2.9	0.2	-6.4	0	3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_30358	TC21091	13.1	28.4	15.2	6.6	0	0	0	2.1	signalling.receptor kinases.leucine rich repeat X	"protein kinase family protein  similar to ATPSKR1 (PHYTOSULFOKIN RECEPTOR 1), ATP binding / peptide receptor/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT2G02220.1); similar to Serine/threonine protein kinase, active site [Medicago tru"
MSGI1_23914	TC21093	5.2	4.3	21	2.6	0	-3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_27622	TC21098	0.1	0.2	7.6	10.9	0	0	0	-5.8	signalling.G-proteins	EMB2473 (EMBRYO DEFECTIVE 2473); GTP binding / calcium ion binding  similar to GTP-binding protein-related [Arabidopsis thaliana] (TAIR:AT3G63150.1); similar to GTP-binding protein-related [Arabidopsis thaliana] (TAIR:AT3G05310.1); similar to Os03g081060
MSGI1_57039	TC21101	46.2	0.6	19	0.2	-6.3	-6.6	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_28097	TC21142	11.1	0.6	1.2	0.4	-4.2	0	0	0	misc.cytochrome P450	"CYP86A4 (cytochrome P450, family 86, subfamily A, polypeptide 4); oxygen binding Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly at highest level in mature stems and flowers. similar to CYP86A8 (LACERATA), fatty"
MSGI1_27383	TC21146	65.1	31.6	21.6	31	-1	0	1.6	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L26 (RPL26A)  Identical to 60S ribosomal protein L26-1 (RPL26A) [Arabidopsis Thaliana] (GB:P51414;GB:Q9M2W7); similar to 60S ribosomal protein L26 (RPL26B) [Arabidopsis thaliana] (TAIR:AT5G67510.1); similar to 60S ribosomal protein
MSGI1_16454	TC21149	4.2	2.2	18.9	2.8	0	-2.8	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_33889	TC21160	2.7	1.9	20.2	3.9	0	-2.4	-2.9	0	transport.metal	"YSL2 (YELLOW STRIPE LIKE 2); oligopeptide transporter closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1 similar to YSL3 (YELLOW STRIPE LIKE 3), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G"
MSGI1_55725	TC21165	59.3	2.9	6	4.1	-4.4	0	3.3	0	lipid metabolism.FA synthesis and FA elongation.acyl coa ligase	acyl-activating enzyme 11 (AAE11)  similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT1G68270.1); similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT1G65880.1); similar t
MSGI1_7658	TC2117	9.7	12.4	39.1	30.5	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_40598	TC21170	4.3	7.4	24.9	4.8	0	-2.4	-2.5	0	transport.metabolite transporters at the mitochondrial membrane	ATMBAC2/BAC2 (Arabidopsis mitochondrial basic amino acid carrier 2); L-ornithine transporter/ binding / carnitine:acyl carnitine antiporter encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosol similar
MSGI1_24495	TC2118	23.8	46.4	196.2	72.4	0	-1.4	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_24344	TC21186	0.6	1	15.2	12.5	0	0	-4.7	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_27536	TC2119	8.8	14	38.8	17.5	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_381	TC212	172.5	39.5	66.8	266.6	-2.1	2	1.4	-2.8	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"lipoxygenase, putative  similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to LOX1 (Lipoxygenase 1), lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G55020.1); similar to lipoxygenase, putati"
MSGI1_16010	TC2121	68	25.6	49	45.6	-1.4	0	0	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"50S ribosomal protein L21, chloroplast / CL21 (RPL21)  Identical to 50S ribosomal protein L21, chloroplast precursor (CL21) (RPL21) [Arabidopsis Thaliana] (GB:P51412;GB:Q9SMM2); similar to NFD1 (NUCLEAR FUSION DEFECTIVE 1), structural constituent of ribo"
MSGI1_33641	TC21213	8	4.3	19.1	2.3	0	-3.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_31108	TC21218	0	0	7.8	13.1	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_32383	TC21262	27.4	7.7	6.5	5.8	-1.8	0	2.1	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_2764	TC2127	33.1	64.4	77.3	53.8	0	0	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_62115	TC21274	8.3	3.5	29	3.8	0	-2.9	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_39015	TC21278	26.5	7.7	10.8	19.3	-1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_118077	TC21291	17	2.3	6.3	2.5	-2.9	0	0	0	amino acid metabolism.synthesis.aspartate family.misc.homoserine.bifunctional aspartate kinase/homoserine dehydrogenase	"AK-HSDH/AK-HSDH II; aspartate kinase/ homoserine dehydrogenase Encodes a bifunctional aspartate kinase/homoserine dehydrogenase.  These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, iso"
MSGI1_63526	TC21298	13.7	0.3	2.2	0.6	-5.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_29102	TC21315	6.2	4.4	20.4	4.1	0	-2.3	0	0	transport.calcium	ATTPC1 (TWO-PORE CHANNEL 1); calcium channel/ voltage-gated calcium channel Encodes a depolarization-activated Ca(2+) channel. Anti-sense experiments with this gene as well as Sucrose-H(+) symporters and complementation of yeast sucrose uptake mutant cch
MSGI1_19798	TC2132	256.9	6.1	60.6	4.4	-5.4	-3.8	2.1	0	stress.abiotic.unspecified	Bet v I allergen family protein  Identical to MLP-like protein 423 (MLP423) [Arabidopsis Thaliana] (GB:Q93VR4;GB:Q8L9L8;GB:Q9LR93); similar to MLP34 (MLP-LIKE PROTEIN 34) [Arabidopsis thaliana] (TAIR:AT1G70850.3); similar to Bet v I allergen [Medicago tru
MSGI1_42510	TC21321	6.5	16.9	7.4	29.6	0	2	0	0	RNA.regulation of transcription.bZIP transcription factor family	"TGA3 (TGA1a-related gene 3); DNA binding / calmodulin binding / transcription factor Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties. Identical to Trans"
MSGI1_10451	TC2134	157.5	86.9	51.5	74.9	0	0	1.6	0	protein.synthesis.misc ribososomal protein	"RPL16B (ribosomal protein L16B); structural constituent of ribosome encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root and shoot apical meristems and in lateral root primordia. Expr"
MSGI1_12322	TC2135	26.5	35.9	232.3	42.1	0	-2.5	-3.1	0	cell wall.modification	"ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2) member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-like A2 precursor (AtEXLA2) (AtEXPL2) (At-EXPL2) (Ath- ExpBeta-2.2) (EXLA2"
MSGI1_41298	TC21350	30.8	20.3	9.5	11.9	0	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_118076	TC21368	0	0	13.1	7.8	0	0	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_28754	TC21372	6.7	31.5	30.2	39.7	2.2	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_118071	TC21376	4.8	5	5.5	21.2	0	0	0	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_87092	TC21380	13.4	12.3	0.5	0.2	0	0	4.7	5.9	not assigned.unknown	not assigned.unknown
MSGI1_5573	TC21382	43.1	46.4	16.8	28.7	0	0	1.4	0	hormone metabolism.auxin.induced-regulated-responsive-activated	IAA9 (indoleacetic acid-induced protein 9); transcription factor auxin (indole-3-acetic acid) induced gene Identical to Auxin-responsive protein IAA9 (Indoleacetic acid-induced protein 9) (IAA9) [Arabidopsis Thaliana] (GB:Q38827;GB:Q8LBP2;GB:Q9FLH4); simi
MSGI1_5573	TC21382	43.1	46.4	16.8	28.7	0	0	1.4	0	RNA.regulation of transcription.Aux/IAA family	IAA9 (indoleacetic acid-induced protein 9); transcription factor auxin (indole-3-acetic acid) induced gene Identical to Auxin-responsive protein IAA9 (Indoleacetic acid-induced protein 9) (IAA9) [Arabidopsis Thaliana] (GB:Q38827;GB:Q8LBP2;GB:Q9FLH4); simi
MSGI1_118067	TC21398	0	0	10.3	12.7	0	0	0	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_267	TC214	1.2	37.5	2.2	23	5	3.4	0	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_4436	TC2140	46.4	37.7	75.1	101.2	0	0	0	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_47599	TC21400	3.1	4.7	472.5	8.5	0	-5.8	-7.3	0	not assigned.unknown	not assigned.unknown
MSGI1_50098	TC21413	1.7	26.3	4.7	17	4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_22827	TC21436	37.5	10.2	6.9	5.8	-1.9	0	2.4	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1); lipid binding encodes a putative apoplastic lipid transfer protein that is involved in systemic acquired resistance. Mutants in this gene exhibit wild-type local resistance to avirulent and virulent Pseudomonas s
MSGI1_40595	TC21441	11.7	11.6	0.1	0	0	0	6.9	4.5	not assigned.unknown	not assigned.unknown
MSGI1_41503	TC21446	0.8	0.8	15.4	1.6	0	-3.3	-4.3	0	not assigned.unknown	not assigned.unknown
MSGI1_20508	TC21447	14.5	0.5	1.5	0.3	-4.9	0	3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_61090	TC21451	2.7	9.9	129.9	1.1	0	-6.9	-5.6	0	protein.degradation.ubiquitin.E3.RING	armadillo/beta-catenin repeat family protein / U-box domain-containing protein  similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G60190.1); similar to putative Avr9/Cf-9 rapidly elic
MSGI1_30859	TC21453	4.1	10.9	0	0	0	0	0	4.4	not assigned.unknown	not assigned.unknown
MSGI1_92680	TC21458	0	18	10.3	73.1	5.2	2.8	0	-2	not assigned.unknown	not assigned.unknown
MSGI1_25497	TC21463	29	1.7	0.1	0	-4.1	0	8.2	0	cell wall.degradation.pectate lyases and polygalacturonases	"PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2); protein binding polygalacturonase inhibiting protein 2 (PGIP2) mRNA, Identical to Polygalacturonase inhibitor 2 precursor (Polygalacturonase-inhibiting protein) (PGIP-2) (PGIP2) [Arabidopsis Thaliana] (GB:Q"
MSGI1_53316	TC21467	31.3	35.5	67.8	62.1	0	0	-1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_35122	TC21470	0	0	17.4	13.7	0	0	-5.1	-4.8	cell.cycle.peptidylprolyl isomerase	"peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative  similar to ROF1 (ROTAMASE FKBP 1), FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT3G25230.1); similar to peptidylpro"
MSGI1_2329	TC2149	102.8	68.2	51.2	72.3	0	0	1	0	protein.synthesis.elongation	"elongation factor 1B-gamma, putative / eEF-1B gamma, putative  Identical to Probable elongation factor 1-gamma 2 (EF-1-gamma 2) (eEF-1B gamma 2) [Arabidopsis Thaliana] (GB:Q9FVT2;GB:Q94C85); similar to elongation factor 1B-gamma, putative / eEF-1B gamma,"
MSGI1_37240	TC21490	53.3	5.2	12.1	8.1	-3.4	0	2.1	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL10 (beta-galactosidase 10); beta-galactosidase member of Glycoside Hydrolase Family 35 similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative"
MSGI1_37240	TC21490	53.3	5.2	12.1	8.1	-3.4	0	2.1	0	"misc.gluco-, galacto- and mannosidases"	"BGAL10 (beta-galactosidase 10); beta-galactosidase member of Glycoside Hydrolase Family 35 similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative"
MSGI1_63908	TC21495	4.5	2.8	17.1	1.4	0	-3.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_45271	TC21497	3.5	17	32.4	13.7	0	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_933	TC215	35	54	744.6	40.8	0	-4.2	-4.4	0	minor CHO metabolism.myo-inositol.InsP Synthases	"inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative  Identical to Probable inositol-3-phosphate synthase isozyme 3 (EC 5.5.1.4) (Myo- inositol-1-phosphate synthase 3) (MI-1-P synthase 3) (IPS"
MSGI1_4443	TC2150	6.3	11.1	25.6	9.7	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_2785	TC2152	20.5	48.9	35.5	29.9	1.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_21399	TC21523	54.4	4.3	0.4	0.6	-3.7	0	7.1	0	cell wall.degradation.pectate lyases and polygalacturonases	"PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding polygalacturonase inhibiting protein 1 (PGIP1) mRNA, Identical to Polygalacturonase inhibitor 1 precursor (Polygalacturonase-inhibiting protein) (PGIP-1) (PGIP1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_21323	TC21529	6.3	33.8	14.6	22.1	2.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_34890	TC21547	0	0	29.9	23.9	0	0	-5.9	-5.6	not assigned.unknown	not assigned.unknown
MSGI1_1710	TC2156	5.5	30.2	6	14.3	2.5	0	0	0	transport.metal	NRAMP1 (NRAMP metal ion transporter 1); manganese ion transporter/ metal ion transporter Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yea
MSGI1_66506	TC21560	11.6	26.2	52.9	19.5	0	-1.4	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_9243	TC2158	72.8	46.5	28.5	48	0	0	1.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L7 (RPL7D)  Identical to 60S ribosomal protein L7-4 (RPL7D) [Arabidopsis Thaliana] (GB:Q9LHP1); similar to 60S ribosomal protein L7 (RPL7B) [Arabidopsis thaliana] (TAIR:AT2G01250.1); similar to ribosomal protein L7 (GB:1909359B); co
MSGI1_18283	TC21586	7.8	15.9	16.9	2	0	-3.1	0	3	cell wall	"protein kinase, putative  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G55950.1); similar to cytokinin-regulated kinase 1 [Nicotiana tabacum] (GB:AAG25966.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009);"
MSGI1_18283	TC21586	7.8	15.9	16.9	2	0	-3.1	0	3	signalling.receptor kinases.crinkly like	"protein kinase, putative  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G55950.1); similar to cytokinin-regulated kinase 1 [Nicotiana tabacum] (GB:AAG25966.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009);"
MSGI1_30479	TC21593	2	4.1	32.2	4.6	0	-2.8	-4	0	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS9 (Arabidopsis thaliana trehalose-phosphatase/synthase 9); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that"
MSGI1_1188	TC21603	22.8	28.7	5.9	0.8	0	0	0	5.2	DNA.synthesis/chromatin structure	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14450.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35920.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic
MSGI1_50566	TC21605	14.2	11.1	0.2	0	0	0	6.1	4.5	not assigned.unknown	not assigned.unknown
MSGI1_4383	TC2163	184.5	20.3	86.7	51.3	-3.2	0	1.1	-1.3	cell wall	"leucine-rich repeat family protein  similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G19320.1); similar to Leucine-rich repeat, plant specific [Medicago truncatula] (GB:ABD32635.1); contains InterPro domain Leucine-rich repea"
MSGI1_14935	TC21630	3.6	4.7	27.7	2.8	0	-3.3	-2.9	0	stress.abiotic.drought/salt	"HYP1 (HYPOTHETICAL PROTEIN 1) unknown protein, has cDNAs and ESTs associated to it similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69450.1); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os12g"
MSGI1_23700	TC21634	3.8	0.8	3.1	15.5	0	0	0	-4.3	stress.biotic	"ATPRB1 (Arabidopsis thaliana basic pathogenesis-related protein 1) pathogenesis related protein, encodes a basic PR1-like protein. Expresses in flowers, roots, and not in leaves and responses to ethylene and methyl jasmonate. Salicylic acid represses gen"
MSGI1_19082	TC21639	5.9	7.3	26.7	6.6	0	-2	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_6017	TC2164	6.6	15.5	67	9.1	0	-2.9	-3.3	0	transport.misc	xanthine/uracil permease family protein  similar to xanthine/uracil/vitamin C permease family protein [Arabidopsis thaliana] (TAIR:AT5G50300.1); similar to Os05g0332600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055224.1); similar to hypothetical
MSGI1_44193	TC21644	5.3	10.3	27.5	25.4	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_9181	TC21648	4.3	17.9	2.8	17.3	0	2.6	0	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY57 (WRKY DNA-binding protein 57); transcription factor member of WRKY Transcription Factor; Group II-c Identical to Probable WRKY transcription factor 57 (WRKY DNA-binding protein 57) (WRKY57) [Arabidopsis Thaliana] (GB:Q9C983;GB:Q9C798); similar to
MSGI1_31915	TC21675	9.6	18.1	0	0	0	0	0	5.2	not assigned.unknown	not assigned.unknown
MSGI1_65361	TC21678	20.3	19.1	14.5	3.7	0	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_33252	TC21683	2.3	4	20.1	6.1	0	0	-3.1	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_54911	TC21684	2.1	1.2	4.2	15.2	0	0	0	-3.7	amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine.SAT	ATSERAT3;2 (SERINE ACETYLTRANSFERASE 3;2); acetyltransferase/ serine O-acetyltransferase Encodes a cytosolic serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis.  Expressed in the vascular system.  Expression is induced i
MSGI1_13267	TC2170	48	59.8	35.3	108.8	0	1.6	0	0	stress.abiotic.unspecified	allergen V5/Tpx-1-related family protein  similar to allergen V5/Tpx-1-related family protein [Arabidopsis thaliana] (TAIR:AT5G57625.1); similar to Pathogenesis-related protein PR-1 precursor (GB:Q40374); contains InterPro domain Ves allergen; (InterPro:I
MSGI1_62112	TC21717	2.8	4.1	37.6	27.4	0	0	-3.7	-2.7	not assigned.unknown	not assigned.unknown
MSGI1_14370	TC21763	7.7	16.9	0.2	0.4	0	0	0	5.4	not assigned.unknown	not assigned.unknown
MSGI1_64634	TC21770	5.8	0.6	15.3	0.4	0	-5.3	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	GH3.1 encodes a protein similar to IAA-amido synthases. Lines carrying an insertion in this gene are hypersensitive to auxin. Identical to Probable indole-3-acetic acid-amido synthetase GH3.1 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 1) (AtGH3-1) (
MSGI1_36514	TC21774	4.7	3.9	25.3	2.8	0	-3.2	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_73064	TC21796	8.8	10.3	70.9	25.5	0	-1.5	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_37239	TC21803	10.8	28.2	15.2	5.9	0	0	0	2.3	not assigned.unknown	not assigned.unknown
MSGI1_41709	TC21824	10.9	12.5	0.1	0	0	0	6.8	4.6	not assigned.unknown	not assigned.unknown
MSGI1_20752	TC21842	54.9	36.2	14.8	40.6	0	1.5	1.9	0	RNA.processing	"small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative  similar to SMD3 (SNRNP CORE PROTEIN SMD3) [Arabidopsis thaliana] (TAIR:AT1G76300.1); similar to Os02g0102700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045599.1);"
MSGI1_33886	TC21853	7	11.6	0.4	0.1	0	0	0	6.9	not assigned.unknown	not assigned.unknown
MSGI1_25815	TC21865	0	0	33.9	32.4	0	0	-6.1	-6	not assigned.unknown	not assigned.unknown
MSGI1_31553	TC21868	0.1	0	15.1	28.9	0	0	-7.2	-5.9	not assigned.unknown	not assigned.unknown
MSGI1_20076	TC21878	0	0.4	21.3	25.4	0	0	-5.4	-6	DNA.synthesis/chromatin structure	"DEAD/DEAH box helicase, putative (RH10)  Identical to DEAD-box ATP-dependent RNA helicase 10 (EC 3.6.1.-) (RH10) [Arabidopsis Thaliana] (GB:Q8GY84;GB:Q8LA24;GB:Q9FME1;GB:Q9ZS10); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT"
MSGI1_3777	TC2189	85.4	173.6	107.4	94.2	1	0	0	0	"metal handling.binding, chelation and storage"	ATFP3 (Arabidopsis thaliana farnesylated protein 3); metal ion binding Farnesylated protein that binds metals. similar to metal ion binding [Arabidopsis thaliana] (TAIR:AT5G50740.1); similar to OSIGBa0096P03.8 [Oryza sativa (indica cultivar-group)] (GB:CA
MSGI1_48697	TC21893	1.3	0.8	15.7	21.2	0	0	-3.6	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_34888	TC21896	8.3	11.2	0	0	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_21398	TC21897	12.7	3.6	0	0	0	0	4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_20075	TC21912	4.7	35.2	57.1	85.2	2.9	0	-3.6	-1.3	stress.abiotic.unspecified	"polcalcin, putative / calcium-binding pollen allergen, putative  similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G18210.2); similar to calcium-binding pollen allergen [Arachis hypogaea] (GB:AAZ20284.1); contains InterPro doma"
MSGI1_20075	TC21912	4.7	35.2	57.1	85.2	2.9	0	-3.6	-1.3	signalling.calcium	"polcalcin, putative / calcium-binding pollen allergen, putative  similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G18210.2); similar to calcium-binding pollen allergen [Arachis hypogaea] (GB:AAZ20284.1); contains InterPro doma"
MSGI1_14400	TC21924	1.8	1.4	40.6	64.9	0	0	-4.5	-5.5	not assigned.unknown	not assigned.unknown
MSGI1_3355	TC21928	11.3	34	1.3	0.5	1.6	0	0	6.1	RNA.regulation of transcription.WRKY domain transcription factor family	TTR1 (WRKY domain family protein 16); transcription factor Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. Identical to Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16)
MSGI1_3355	TC21928	11.3	34	1.3	0.5	1.6	0	0	6.1	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G17680.1); similar to TIR-NBS type disease resistance protein [Populus trichocarpa] (GB:ABF81459"
MSGI1_5188	TC21933	35.8	75.6	0.2	0	1.1	0	7.5	7.2	not assigned.unknown	not assigned.unknown
MSGI1_14867	TC21943	138.7	1.7	25.6	4	-6.4	-2.7	2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_27892	TC21960	0	0	29	31.2	0	0	-5.9	-6	not assigned.unknown	not assigned.unknown
MSGI1_31808	TC21966	14.3	13.6	0.2	0	0	0	6.2	4.8	not assigned.unknown	not assigned.unknown
MSGI1_33778	TC21991	45.2	49.3	71.8	23.8	0	-1.6	0	0	cell.organisation	"ANNAT1 (ANNEXIN ARABIDOPSIS 1); calcium ion binding / calcium-dependent phospholipid binding Encodes a member of the annexin gene family, a diverse, multigene family of calcium-dependent, membrane-binding proteins. The protein was determined to have pero"
MSGI1_47178	TC22026	8.8	6.8	22.6	3.9	0	-2.5	0	0	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	BIK1 (BOTRYTIS-INDUCED KINASE1); kinase Encodes a plasma membrane-localized ser/thr protein kinase that is a crucial component of host response signaling required to activate the resistance responses to Botrytis and A. brassicicola infection.  It is like
MSGI1_64294	TC22032	13.5	7.1	0	0	0	0	4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_37095	TC22034	7.7	14.5	1.4	1.7	0	0	0	3.1	not assigned.unknown	not assigned.unknown
MSGI1_61087	TC22040	5.8	23.3	3.8	4.5	2	0	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_40592	TC22065	7.6	20.8	35.7	17.2	0	0	-2.2	0	transport.peptides and oligopeptides	"proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT5G14940.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABE79897.1); con"
MSGI1_12321	TC22076	5.4	15.8	0	0	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_62459	TC22079	11.3	10.8	0	1	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_44188	TC22080	7.7	14.8	28.2	16.5	0	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_10426	TC22096	4.9	2	22.9	2.5	0	-3.2	-2.2	0	transport.ABC transporters and multidrug resistance systems	ATMRP14 (Arabidopsis thaliana multidrug resistance-associated protein 14) member of MRP subfamily similar to ATMRP5 (Arabidopsis thaliana multidrug resistance-associated protein 5) [Arabidopsis thaliana] (TAIR:AT1G04120.1); similar to ATMRP8 (Arabidopsis
MSGI1_4503	TC221	161.6	687.2	203.6	551.6	2.1	1.4	0	0	metal handling	"auxin/aluminum-responsive protein, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43830.1); similar to aluminum-induced [Brassica napus] (GB:BAA25999.1); contains domain ASPARAGINE SYNTHETASE (PTHR11772); contains domain no descrip"
MSGI1_8170	TC2210	59.6	34.2	26.8	39.8	0	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_32380	TC22122	7.7	10.2	31.8	7.5	0	-2.1	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_35541	TC22124	10.4	8	0.3	0.1	0	0	5.1	0	not assigned.unknown	not assigned.unknown
MSGI1_77996	TC22136	0.5	0.3	24.3	2.2	0	-3.5	-5.6	0	not assigned.unknown	not assigned.unknown
MSGI1_89110	TC22139	0	0	13.8	9.2	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_50563	TC22151	0.1	0.1	13.7	9.5	0	0	-7.1	0	not assigned.unknown	not assigned.unknown
MSGI1_29369	TC22164	2.9	18.1	1.9	1.4	2.6	0	0	3.7	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	RAP2.2; DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 A
MSGI1_63203	TC22175	28.1	2.6	5	6.9	-3.4	0	2.5	0	signalling.receptor kinases.legume-lectin	"lectin protein kinase, putative  similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G53810.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98991.1); similar to lec"
MSGI1_26673	TC22177	33.2	11.3	23.9	14.9	-1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_85119	TC22190	9.7	25.3	5.9	23.5	0	2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_57956	TC2220	19.1	6.1	1.8	0.7	0	0	3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_76935	TC22200	41.7	16.8	30.9	32.6	-1.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_18427	TC2221	65	17.4	22	9.1	-1.9	0	1.6	0	cell wall	"glycosyl hydrolase family 17 protein  similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT5G55180.1); similar to Glycoside hydrolase, family 17 [Medicago truncatula] (GB:ABE77964.1); contains InterPro domain X8; (InterPro:IPR01"
MSGI1_16908	TC22230	6.7	7	40.7	7.4	0	-2.5	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_11567	TC2226	138.7	195.7	105	73.5	0	0	0	1.4	signalling.calcium	"calmodulin, putative  similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT2G41410.1); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE94192.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro doma"
MSGI1_28001	TC22267	0	0	7.5	14.9	0	0	0	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_6128	TC2228	15.5	16.5	80.1	8.3	0	-3.3	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_6414	TC2229	4	6	49.1	14.4	0	-1.8	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_4651	TC223	97.6	53.5	36.5	49	0	0	1.4	0	secondary metabolism.phenylpropanoids	transferase family protein  similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT2G39980.1); similar to AER [Nicotiana tabacum] (GB:AAM73656.1); contains InterPro domain Transferase; (InterPro:IPR003480)
MSGI1_1533	TC2230	15.8	25.4	95.4	15.3	0	-2.6	-2.6	0	hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate synthase	"ACS6 (1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6) encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family Identical to 1-aminocyclopropane-1-carbo"
MSGI1_58908	TC22302	0.5	0.2	16.7	20.2	0	0	-5.1	-6.7	not assigned.unknown	not assigned.unknown
MSGI1_66503	TC22324	7.3	12.8	0.2	0	0	0	0	4.7	not assigned.unknown	not assigned.unknown
MSGI1_32820	TC22340	4	3.8	34.7	5.7	0	-2.6	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_72598	TC22350	0.4	11	0	5.1	4.8	0	0	0	cell wall.degradation.pectate lyases and polygalacturonases	"glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  similar to exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] (TAIR:AT3G14040.1); similar to Exopolygalacturonase precursor"
MSGI1_46161	TC22356	0.8	4.2	13.3	2.9	0	0	-4.1	0	protein.degradation.AAA type	"AAA-type ATPase family protein  similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT4G28000.1); similar to ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G52882.1); similar to AAA ATPase,"
MSGI1_59473	TC22358	6.2	6	31.9	6.7	0	-2.3	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_51755	TC22364	22.6	35.4	21	48.8	0	1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_62457	TC22377	14.9	21.4	33.5	48.4	0	0	0	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_23485	TC2238	23.2	5.6	29.9	5.2	-2.1	-2.5	0	0	cell wall	"LAC2 (laccase 2); copper ion binding / oxidoreductase putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1)"
MSGI1_23485	TC2238	23.2	5.6	29.9	5.2	-2.1	-2.5	0	0	secondary metabolism.simple phenols	"LAC2 (laccase 2); copper ion binding / oxidoreductase putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1)"
MSGI1_86417	TC22386	48.5	0	9.4	0.2	-6.6	0	2.4	0	cell wall.modification	"EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4); hydrolase, acting on glycosyl bonds EXGT-A4, endoxyloglucan transferase, Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 5 precursor (EC 2.4.1.207) (At-XTH5) (XTH-5) (XTH5) [Arabidopsis Tha"
MSGI1_19645	TC2240	6.6	17	31.6	14.1	0	0	-2.3	0	cell wall.cellulose synthesis.cellulose synthase	"CESA3 (CELLULASE SYNTHASE 3); cellulose synthase/ transferase, transferring glycosyl groups cellulose synthase. Involved in defense signaling. Identical to Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC 2.4.1.12) (AtCesA-3) (Constitutive expr"
MSGI1_54664	TC22442	3	2	18	7.3	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_32710	TC22444	136.5	73.6	64	95.1	0	0	1.1	0	mitochondrial electron transport / ATP synthesis.F1-ATPase	"ATP synthase epsilon chain, mitochondrial  Identical to ATP synthase epsilon chain, mitochondrial (EC 3.6.3.14) [Arabidopsis Thaliana] (GB:Q96253); similar to ATP synthase epsilon chain, mitochondrial (GB:Q06450); contains InterPro domain ATPase, F1 comp"
MSGI1_19472	TC2245	116	37.1	50.5	68.3	-1.6	0	1.2	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"RPS17 (ribosomal protein S17); structural constituent of ribosome nuclear-encoded 30S chloroplast ribosomal protein S17 Identical to 30S ribosomal protein S17, chloroplast precursor (CS17) (RPS17) [Arabidopsis Thaliana] (GB:P16180); similar to EMB1129 (E"
MSGI1_69439	TC22462	19.8	20	32.8	9	0	-1.9	0	0	not assigned.unknown	not assigned.unknown
MSGI1_48274	TC22478	1.5	20.9	26.8	3	3.8	-3.2	-4.2	2.8	stress.abiotic.touch/wounding	"wound-responsive family protein  similar to wound-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G10265.1); similar to putative wound-induced protein [Medicago sativa subsp. x varia] (GB:CAB65284.1); similar to wound induced protein [Solanu"
MSGI1_46958	TC22481	91.8	58.4	23.2	38.8	0	0	2	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S28 (RPS28B)  Identical to 40S ribosomal protein S28-1 (RPS28B) [Arabidopsis Thaliana] (GB:Q9SR73); similar to 40S ribosomal protein S28 (RPS28A) [Arabidopsis thaliana] (TAIR:AT3G10090.1); similar to ribosomal protein S28 [Prunus per
MSGI1_7391	TC2249	4.8	31.1	18	64.5	2.7	1.8	0	-1.1	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G38180.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE91665.1); contains InterPro domain Lipolytic en"
MSGI1_8847	TC2250	47.3	106.7	38.1	45.9	1.2	0	0	1.2	cell wall	"thaumatin, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G24180.1); similar to Thaumatin, pathogenesis-related [Medicago truncatula] (GB:ABE77922.1); similar to Os03g0243900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049531"
MSGI1_8847	TC2250	47.3	106.7	38.1	45.9	1.2	0	0	1.2	stress.biotic	"thaumatin, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G24180.1); similar to Thaumatin, pathogenesis-related [Medicago truncatula] (GB:ABE77922.1); similar to Os03g0243900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049531"
MSGI1_77987	TC22501	6.4	44.4	26.3	47.3	2.8	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_29475	TC2251	129.2	8.5	64.5	18.7	-3.9	-1.8	1	0	cell wall.modification	"ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thalian"
MSGI1_40230	TC22539	4.3	6.1	23.4	25.9	0	0	-2.4	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_33885	TC22547	18.2	113	24.5	161.9	2.6	2.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_22373	TC22562	4.5	2.8	33.3	4.7	0	-2.8	-2.9	0	lipid metabolism.lipid degradation.lysophospholipases	1-phosphatidylinositol phosphodiesterase-related  similar to 1-phosphatidylinositol phosphodiesterase-related [Arabidopsis thaliana] (TAIR:AT4G34920.1); similar to Ki1 protein [Beta vulgaris] (GB:AAO92349.1); contains InterPro domain Phosphatidylinositol
MSGI1_88436	TC22569	0	0	38.1	25	0	0	-6.3	-5.6	protein.targeting.secretory pathway.golgi	"ATBS14A; protein transporter Encodes a Bet1/Sft1-like SNARE protein which  fully suppresses the temperature-sensitive  growth defect in <i>sft1-1</i> yeast cells; however, it cannot support the deletion of the yeast BET1 gene (<i>bet1&Delta;</i>). Identi"
MSGI1_65354	TC22573	12.7	21.2	0.4	0.6	0	0	5	5.1	not assigned.unknown	not assigned.unknown
MSGI1_98901	TC2258	105.7	60.6	38.4	66.1	0	0	1.5	0	protein.synthesis.misc ribososomal protein	XW6; structural constituent of ribosome  Identical to 40S ribosomal protein S2-1 (RPS2A) [Arabidopsis Thaliana] (GB:Q8L8Y0;GB:Q9LQC2;GB:Q9SM07); Identical to 40S ribosomal protein S2-2 (RPS2B) [Arabidopsis Thaliana] (GB:Q93VB8;GB:Q8L861;GB:Q9SM06); simil
MSGI1_91920	TC22608	8.9	8.1	44.5	7.1	0	-2.6	-2.3	0	transport.nitrate	"ATNRT1:2 (NITRATE TRANSPORTER 1:2); calcium ion binding / transporter Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots. similar to nitrate transporter, putative [Arabidopsis thal"
MSGI1_20507	TC22642	3.9	3	25.8	0.4	0	-6	-2.7	0	signalling.phosphorelay	"AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3); histidine phosphotransfer kinase Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs).  AHPs function as redundant positive regulators of cytokinin signaling.  Membe"
MSGI1_20507	TC22642	3.9	3	25.8	0.4	0	-6	-2.7	0	hormone metabolism.cytokinin.signal transduction	"AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3); histidine phosphotransfer kinase Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs).  AHPs function as redundant positive regulators of cytokinin signaling.  Membe"
MSGI1_61084	TC22645	2.1	10.1	1.1	21.5	0	4.3	0	0	protein.postranslational modification	"CIPK7 (CBL-INTERACTING PROTEIN KINASE 7); kinase Encodes a serine/threonine protein kinase with similarities to CBL-interacting protein kinases, SNF1 and SOS2. similar to CIPK4 (CBL-INTERACTING PROTEIN KINASE 4), kinase [Arabidopsis thaliana] (TAIR:AT4G1"
MSGI1_22679	TC22663	11.4	1.5	14.2	0.7	0	-4.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_58906	TC22667	36.2	20.8	71.8	27.3	0	-1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_69436	TC22679	10.8	6.4	0.2	0.6	0	0	5.8	0	not assigned.unknown	not assigned.unknown
MSGI1_97264	TC22688	0	0	10.1	12	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_82611	TC22690	152.8	73	203	79.7	-1.1	-1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_89758	TC22692	54.6	68.7	15.5	63.5	0	2	1.8	0	protein.degradation.subtilases	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14067.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_47595	TC22695	20.7	9.1	3.1	7.1	0	0	2.7	0	cell wall	"glycosyl hydrolase family 17 protein  similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT5G55180.1); similar to Glycoside hydrolase, family 17 [Medicago truncatula] (GB:ABE77964.1); contains InterPro domain X8; (InterPro:IPR01"
MSGI1_5986	TC227	19.4	36.1	11.9	8.7	0	0	0	2.1	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_5986	TC227	19.4	36.1	11.9	8.7	0	0	0	2.1	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G11250.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thal"
MSGI1_32139	TC2270	338.7	91.7	128.3	224.8	-1.9	0	1.4	-1.3	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_55141	TC22708	67.4	93.6	149.9	84	0	0	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_6016	TC2271	2.8	24.9	15.6	40	3.2	1.4	0	0	misc.cytochrome P450	"CYP82C4 (cytochrome P450, family 82, subfamily C, polypeptide 4); oxygen binding member of CYP82C similar to CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31950.1); similar to CYP82C2 (c"
MSGI1_42670	TC22710	3.3	23.1	5.8	22	2.8	0	0	0	RNA.regulation of transcription.C2H2 zinc finger family	"zinc finger (C2H2 type) protein (WIP3)  similar to TT1 (TRANSPARENT TESTA 1), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34790.1); similar to Os05g0444200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055679.1); similar to Zinc finger, C2"
MSGI1_73059	TC22718	7.2	33.8	17.3	4.9	2.2	0	0	2.8	not assigned.unknown	not assigned.unknown
MSGI1_16453	TC22729	1.8	3.4	6.7	28.6	0	2.1	0	-3.1	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G47090.1); similar to EFR (EF-TU RECEPTOR), ATP binding / kinase/ protein serine/threonine k"
MSGI1_16453	TC22729	1.8	3.4	6.7	28.6	0	2.1	0	-3.1	signalling.receptor kinases.leucine rich repeat XII	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G47090.1); similar to EFR (EF-TU RECEPTOR), ATP binding / kinase/ protein serine/threonine k"
MSGI1_6830	TC2280	19.6	22.5	84.1	23.4	0	-1.8	-2.1	0	cell wall	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_6830	TC2280	19.6	22.5	84.1	23.4	0	-1.8	-2.1	0	stress.biotic	ATHCHIB (BASIC CHITINASE); chitinase encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. Identical to Basic endochitinase B precursor (EC 3.2.1.14) (Pa
MSGI1_13730	TC2285	117	57.9	65.3	56.8	-1	0	0	0	mitochondrial electron transport / ATP synthesis.cytochrome c	"CYTC-2 (CYTOCHROME C-2); electron carrier Encodes cytochrome c. Promoter directs preferential expression in vascular tissues of cotyledons, leaves, roots, and hypocotyls, and in anthers. Identical to Probable cytochrome c At4g10040 [Arabidopsis Thaliana]"
MSGI1_13569	TC2296	81.4	35.8	20.9	34.5	-1.2	0	2	0	protein.synthesis.misc ribososomal protein	"RPL16B (ribosomal protein L16B); structural constituent of ribosome encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root and shoot apical meristems and in lateral root primordia. Expr"
MSGI1_5031	TC2299	48.8	11.3	12.4	26	-2.1	0	2	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_5031	TC2299	48.8	11.3	12.4	26	-2.1	0	2	0	hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate oxidase	"1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative similar to 1-aminocyclopropane-1-carboxylate oxidase GI:3386565 from (Sorghum bicolor) similar to ACO2 (ACC OXIDASE 2) [Arabidopsis thaliana] (TAIR:AT1G62380.1); similar to 1-ami"
MSGI1_96539	TC23	85.5	198.4	249.3	75.5	1.2	-1.7	-1.5	1.4	stress.abiotic.heat	HSP70 (heat shock protein 70); ATP binding  similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G
MSGI1_7142	TC2303	4.2	8.3	28.5	14.3	0	0	-2.8	0	protein.degradation.ubiquitin.E3.RING	zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G09760.1); similar to Os06g0677300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058355.1); similar t
MSGI1_14933	TC2304	139.8	74.5	65.4	117	0	0	1.1	0	protein.synthesis.misc ribososomal protein	60S acidic ribosomal protein P3 (RPP3B)  Identical to 60S acidic ribosomal protein P3-2 (RPP3B) [Arabidopsis Thaliana] (GB:Q9LVC9); similar to 60S acidic ribosomal protein P3 (RPP3A) [Arabidopsis thaliana] (TAIR:AT4G25890.1); similar to Os06g0701400 [Oryz
MSGI1_8414	TC2312	65.1	19.8	25.9	23.7	-1.7	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_10788	TC2314	8.9	12.6	108	4.7	0	-4.5	-3.6	0	signalling.calcium	"calcium-binding EF hand family protein  similar to calmodulin-related protein, putative [Arabidopsis thaliana] (TAIR:AT1G76640.1); similar to regulator of gene silencing [Nicotiana tabacum] (GB:AAK11255.1); contains InterPro domain EF-Hand type; (InterPr"
MSGI1_1484	TC2318	47.6	28	16.7	26.2	0	0	1.5	0	TCA / org. transformation.TCA.fumarase	"FUM1 (FUMARASE 1); fumarate hydratase fumarase (FUM1) Identical to Fumarate hydratase 1, mitochondrial precursor (EC 4.2.1.2) (Fumarase 1) (FUM1) [Arabidopsis Thaliana] (GB:P93033;GB:O24649); similar to fumarate hydratase, putative / fumarase, putative ["
MSGI1_14571	TC2335	10.9	21.3	27.5	6.7	0	-2	0	0	stress.abiotic.heat	"DNAJ heat shock protein, putative  similar to DNAJ heat shock N-terminal domain-containing protein (J11) [Arabidopsis thaliana] (TAIR:AT4G36040.1); similar to DnaJ-like protein [Phaseolus vulgaris] (GB:AAB36543.1); contains InterPro domain Heat shock pro"
MSGI1_16596	TC2337	260.7	146.8	92.4	167.9	0	0	1.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L36 (RPL36A)  Identical to 60S ribosomal protein L36-1 (RPL36A) [Arabidopsis Thaliana] (GB:O80929); similar to 60S ribosomal protein L36 (RPL36B) [Arabidopsis thaliana] (TAIR:AT3G53740.4); similar to ribosomal protein L36 [Triticum a
MSGI1_7390	TC2338	5.8	16.4	39.2	17.2	0	0	-2.8	0	misc.cytochrome P450	"CYP716A1 (cytochrome P450, family 716, subfamily A, polypeptide 1); oxygen binding member of CYP716A similar to CYP716A2 (cytochrome P450, family 716, subfamily A, polypeptide 2), heme binding / iron ion binding / monooxygenase [Arabidopsis thaliana] (TA"
MSGI1_2512	TC2341	64.6	8.2	147.3	31.2	-3	-2.2	-1.2	-1.9	cell wall	"chloroplast nucleoid DNA-binding protein, putative  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G10760.1); similar to CND41, chloroplast nucleoid DNA binding protein [Nicotiana tabacum] (GB:BAA22813.1); contains InterPro d"
MSGI1_2512	TC2341	64.6	8.2	147.3	31.2	-3	-2.2	-1.2	-1.9	RNA.regulation of transcription.unclassified	"chloroplast nucleoid DNA-binding protein, putative  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G10760.1); similar to CND41, chloroplast nucleoid DNA binding protein [Nicotiana tabacum] (GB:BAA22813.1); contains InterPro d"
MSGI1_3442	TC2342	47.5	24	19.1	27.3	0	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_6209	TC2351	63.6	86.5	17.1	86.5	0	2.3	1.9	0	protein.degradation.subtilases	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14067.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_6209	TC2351	63.6	86.5	17.1	86.5	0	2.3	1.9	0	cell wall	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14067.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_27620	TC2355	37.4	16.6	6.3	19.4	0	0	2.6	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L4/L1 (RPL4A)  Identical to 60S ribosomal protein L4-1 (L1) (RPL4A) [Arabidopsis Thaliana] (GB:Q9SF40); similar to 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] (TAIR:AT5G02870.1); similar to putative 60S ribosomal prot
MSGI1_14662	TC2356	26	41.5	23.6	14.1	0	0	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_44187	TC2357	12.9	26.2	84.2	38.5	0	-1.1	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_20602	TC2362	0	0	180.3	261.2	0	0	-8.5	-9	not assigned.unknown	not assigned.unknown
MSGI1_6797	TC2363	82.1	35.4	58.2	67.5	-1.2	0	0	0	PS.calvin cyle.Rib5P Isomerase	ribose 5-phosphate isomerase-related  similar to ribose-5-phosphate isomerase [Arabidopsis thaliana] (TAIR:AT2G01290.1); similar to putative ribose-5-phosphate isomerase [Oryza sativa (japonica cultivar-group)] (GB:BAC83440.1); similar to Os07g0176900 [Or
MSGI1_6797	TC2363	82.1	35.4	58.2	67.5	-1.2	0	0	0	OPP.non-reductive PP.ribose 5-phosphate isomerase	ribose 5-phosphate isomerase-related  similar to ribose-5-phosphate isomerase [Arabidopsis thaliana] (TAIR:AT2G01290.1); similar to putative ribose-5-phosphate isomerase [Oryza sativa (japonica cultivar-group)] (GB:BAC83440.1); similar to Os07g0176900 [Or
MSGI1_5900	TC2371	18.5	13.2	45.5	13.6	0	-1.7	0	0	lipid metabolism.FA synthesis and FA elongation.acyl coa ligase	"AMP-binding protein, putative  similar to AMP-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G16340.1); similar to AMP-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G75960.1); similar to AMP-binding protein, putative [Arabidopsis t"
MSGI1_35971	TC2392	20.4	39.6	6.5	5	0	0	0	3	not assigned.unknown	not assigned.unknown
MSGI1_31107	TC2394	10.4	18.8	0.3	0.1	0	0	5.1	7.6	not assigned.unknown	not assigned.unknown
MSGI1_7170	TC2395	9.5	71.3	38.5	7.4	2.9	-2.4	-2	3.3	RNA.regulation of transcription.C3H zinc finger family	CZF1/ZFAR1; transcription factor  similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G55980.1); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR0021
MSGI1_4675	TC2400	21	9.5	30.8	5.4	0	-2.5	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	"similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44500.1); similar to Plant protein family, putative [Medicago truncatula] (GB:ABE79402.1); similar to H+-transporting two-sector ATPase, delta (OSCP) subunit; Hypothetical plant protein [Medic"
MSGI1_15971	TC2409	46.3	23.6	11.3	18.9	0	0	2	0	cell wall.cell wall proteins.AGPs	FLA1 (FLA1) fasciclin-like arabinogalactan-protein 1 (Fla1) Identical to Fasciclin-like arabinogalactan protein 1 precursor (FLA1) [Arabidopsis Thaliana] (GB:Q9FM65;GB:Q8L8T1); similar to FLA2 (FLA2) [Arabidopsis thaliana] (TAIR:AT4G12730.1); similar to p
MSGI1_6566	TC241	12.2	18.6	42.1	13.5	0	-1.6	-1.8	0	RNA.regulation of transcription.WRKY domain transcription factor family	TTR1 (WRKY domain family protein 16); transcription factor Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. Identical to Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16)
MSGI1_6566	TC241	12.2	18.6	42.1	13.5	0	-1.6	-1.8	0	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G11250.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thal"
MSGI1_3849	TC2413	31.1	15.8	10.2	19.7	0	0	1.6	0	lipid metabolism.FA synthesis and FA elongation.enoyl ACP reductase	"MOD1 (MOSAIC DEATH 1); enoyl-[acyl-carrier-protein] reductase (NADH)/ oxidoreductase Encodes enoyl-ACP reductase a component of the fatty acid synthase complex.  A reduced function mutation in this gene, mod1, was found in a screen for premature cell dea"
MSGI1_15097	TC2414	64.2	68.6	42.8	86.8	0	1	0	0	stress.biotic	"ATMLO1/MLO1 (MILDEW RESISTANCE LOCUS O 1); calmodulin binding A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes e"
MSGI1_4184	TC2418	325.9	49.7	178.8	101.5	-2.7	0	0	-1	nucleotide metabolism.degradation	"ATAPY2 (APYRASE 2) Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY1 causes a complete inhibition of pollen germination. similar to ATAPY1 (APYRASE 1), calmodulin binding [Arabidopsis thaliana] (T"
MSGI1_6208	TC2419	65.3	27.1	44.9	53.8	-1.3	0	0	0	protein.synthesis.mito/plastid ribosomal protein.unknown	"ribosomal protein L3 family protein  Identical to 50S ribosomal protein L3-1, chloroplast precursor (RPL3A) [Arabidopsis Thaliana] (GB:Q9SKX4;GB:Q8LEQ9); similar to RPL3P (ribosomal protein large subunit 3P), structural constituent of ribosome [Arabidops"
MSGI1_11958	TC2421	66.4	54.8	24.2	37.1	0	0	1.5	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	homeobox-leucine zipper transcription factor family protein  Identical to WUSCHEL-related homeobox 4 (WOX4) [Arabidopsis Thaliana] (GB:Q6X7J9;GB:Q9C632); similar to transcription factor [Arabidopsis thaliana] (TAIR:AT3G18010.1); similar to Homeobox domai
MSGI1_9855	TC2423	53.3	0.4	10.4	8.5	-7.1	0	2.4	0	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19180.1); similar to PnFL-2 [Ipomoea nil] (GB:AAG49896.1); contains InterPro domain ZIM; (InterPro:IPR010399)
MSGI1_25289	TC2424	45	1	10.5	19	-5.5	0	2.1	-4.2	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74950.1); similar to PnFL-2 [Ipomoea nil] (GB:AAG49896.1); contains InterPro domain ZIM; (InterPro:IPR010399)
MSGI1_20985	TC2428	99.5	62.1	43.4	74.1	0	0	1.2	0	RNA.regulation of transcription.General Transcription	"nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative  similar to nascent polypeptide-associated complex (NAC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G73230.1); similar to tr"
MSGI1_12902	TC243	6.7	15.1	0.3	0.4	0	0	0	5.2	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G11250.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thal"
MSGI1_12902	TC243	6.7	15.1	0.3	0.4	0	0	0	5.2	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_11904	TC2435	18.8	7.6	61.3	15.6	0	-2	-1.7	0	misc.glutathione S transferases	ATGSTU7 (GLUTATHIONE S-TRANSFERASE 25); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by
MSGI1_11011	TC2454	8.1	7	26.9	1.7	0	-4	0	0	"metal handling.binding, chelation and storage"	ATFP3 (Arabidopsis thaliana farnesylated protein 3); metal ion binding Farnesylated protein that binds metals. similar to metal ion binding [Arabidopsis thaliana] (TAIR:AT5G50740.1); similar to OSIGBa0096P03.8 [Oryza sativa (indica cultivar-group)] (GB:CA
MSGI1_4107	TC2465	59.1	19.2	287.7	68.4	-1.6	-2.1	-2.3	-1.8	cell wall	peroxidase encodes peroxidase involved in the lignification of tracheary elements (TE) in roots Identical to Peroxidase 66 precursor (EC 1.11.1.7) (Atperox P66) (ATP27a) (PER66) [Arabidopsis Thaliana] (GB:Q9LT91;GB:P93727); similar to peroxidase 64 (PER6
MSGI1_4107	TC2465	59.1	19.2	287.7	68.4	-1.6	-2.1	-2.3	-1.8	misc.peroxidases	peroxidase encodes peroxidase involved in the lignification of tracheary elements (TE) in roots Identical to Peroxidase 66 precursor (EC 1.11.1.7) (Atperox P66) (ATP27a) (PER66) [Arabidopsis Thaliana] (GB:Q9LT91;GB:P93727); similar to peroxidase 64 (PER6
MSGI1_14231	TC2470	6.1	6.9	49.5	20.6	0	-1.3	-3	0	RNA.regulation of transcription.putative transcription regulator	transcription factor-related  similar to methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04830.1); similar to putative methionine sulfoxide reductase B [Oryza sativa (japonica cult
MSGI1_12981	TC2477	29.4	19.4	8.5	12.1	0	0	1.8	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_12981	TC2477	29.4	19.4	8.5	12.1	0	0	1.8	0	misc.plastocyanin-like	plastocyanin-like domain-containing protein  similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G07475.1); similar to blue copper-binding protein homolog [Triticum aestivum] (GB:AAD10251.1); contains InterPro domain Cup
MSGI1_1108	TC248	0.1	0	936	1425.8	0	0	-13.2	-11.5	not assigned.unknown	not assigned.unknown
MSGI1_15045	TC2485	26.9	3.7	8.8	10.2	-2.9	0	0	0	secondary metabolism.flavonoids.dihydroflavonols.flavonoid 3'-monooxygenase	TT7 (TRANSPARENT TESTA 7); flavonoid 3'-monooxygenase/ oxygen binding Required for flavonoid 3' hydroxylase activity. Identical to Flavonoid 3'-monooxygenase (EC 1.14.13.21) (Flavonoid 3'-hydroxylase) (AtF3'H) (Cytochrome P450 75B1) (TRANSPARENT TESTA 7
MSGI1_10027	TC249	88	40.3	71.7	73	-1.1	0	0	0	protein.synthesis.elongation	"EMB2726 (EMBRYO DEFECTIVE 2726); translation elongation factor  similar to translation elongation factor Ts (EF-Ts), putative [Arabidopsis thaliana] (TAIR:AT4G11120.1); similar to Os12g0541500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066956.1);"
MSGI1_21669	TC2495	5.2	32.2	13.7	15.2	2.6	0	0	0	development.unspecified	TET6 (TETRASPANIN6) Member of TETRASPANIN family similar to TET9 (TETRASPANIN9) [Arabidopsis thaliana] (TAIR:AT4G30430.1); similar to putative senescence-associated protein [Oryza sativa (japonica cultivar-group)] (GB:AAS90676.1); contains InterPro domain
MSGI1_33488	TC2497	0.8	1.5	46.5	16.7	0	-1.5	-5.9	-3.5	not assigned.unknown	not assigned.unknown
MSGI1_5477	TC2498	2.4	22	10.4	22.2	3.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_1552	TC250	53.4	19.4	23.3	34.1	-1.5	0	1.2	0	protein.synthesis.elongation	"EMB2726 (EMBRYO DEFECTIVE 2726); translation elongation factor  similar to translation elongation factor Ts (EF-Ts), putative [Arabidopsis thaliana] (TAIR:AT4G11120.1); similar to Os12g0541500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066956.1);"
MSGI1_23151	TC251	2	2.1	22.7	5.1	0	-2.2	-3.5	0	not assigned.unknown	not assigned.unknown
MSGI1_11791	TC2511	78.6	5.1	30	9	-3.9	-1.7	1.4	0	cell wall.pectin*esterases.misc	"pectinesterase, putative  similar to pectinesterase, putative [Arabidopsis thaliana] (TAIR:AT3G10720.2); similar to papillar cell-specific pectin methylesterase-like protein [Brassica napus] (GB:AAK84428.1); similar to Os01g0311800 [Oryza sativa (japonic"
MSGI1_24494	TC2512	26.2	7.1	6.7	5.2	-1.9	0	2	0	cell wall	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_24494	TC2512	26.2	7.1	6.7	5.2	-1.9	0	2	0	"misc.oxidases - copper, flavone etc."	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_13804	TC2515	6.6	26.6	7	13.6	2	0	0	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3); DNA binding / transcription factor homeobox-containing gene with an unusual feature:  a leucine zipper motif adjacent to the carboxyl-terminal  of the homeodomain structure.  This gene is expressed  primarily in
MSGI1_9413	TC2520	5.3	15.6	36.8	19	0	0	-2.8	0	cell wall	"SCPL40 (serine carboxypeptidase-like 40); serine carboxypeptidase  similar to SCPL39 (serine carboxypeptidase-like 39), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G52020.1); similar to putative serine carboxypeptidase [Pisum sativum] (GB:CAC"
MSGI1_9413	TC2520	5.3	15.6	36.8	19	0	0	-2.8	0	protein.degradation.serine protease	"SCPL40 (serine carboxypeptidase-like 40); serine carboxypeptidase  similar to SCPL39 (serine carboxypeptidase-like 39), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G52020.1); similar to putative serine carboxypeptidase [Pisum sativum] (GB:CAC"
MSGI1_4016	TC2526	49	2.1	14.3	1.2	-4.5	-3.6	1.8	0	misc.cytochrome P450	"CYP86A7 (cytochrome P450, family 86, subfamily A, polypeptide 7); oxygen binding Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers. similar to CYP86A4 (cytochrome P450, family 86, su"
MSGI1_22093	TC2527	37	112.9	74.7	129	1.6	0	0	0	transport.ABC transporters and multidrug resistance systems	"ATPDR7/PDR7 (PLEIOTROPIC DRUG RESISTANCE 7); ATPase, coupled to transmembrane movement of substances  Identical to Probable pleiotropic drug resistance protein 7 (PDR7) [Arabidopsis Thaliana] (GB:Q7PC86;GB:Q9XI48); similar to ATPDR12/PDR12 (PLEIOTROPIC D"
MSGI1_7232	TC2541	17.6	43.3	19.3	23.2	1.3	0	0	0	cell wall	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39000.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G28680.1); similar to protein kinase family protein [Arabidopsis t
MSGI1_7232	TC2541	17.6	43.3	19.3	23.2	1.3	0	0	0	signalling.receptor kinases.Catharanthus roseus-like RLK1	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39000.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G28680.1); similar to protein kinase family protein [Arabidopsis t
MSGI1_4943	TC2542	4.3	11.6	48.8	10.9	0	-2.2	-3.5	0	"misc.oxidases - copper, flavone etc."	"oxidoreductase, 2OG-Fe(II) oxygenase family protein  similar to oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arab"
MSGI1_4943	TC2542	4.3	11.6	48.8	10.9	0	-2.2	-3.5	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_21880	TC255	19.6	21.7	4.6	3.3	0	0	0	2.7	protein.synthesis.elongation	"EMB2726 (EMBRYO DEFECTIVE 2726); translation elongation factor  similar to translation elongation factor Ts (EF-Ts), putative [Arabidopsis thaliana] (TAIR:AT4G11120.1); similar to Os12g0541500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066956.1);"
MSGI1_31552	TC2554	6.7	7.8	27.6	16.5	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_10942	TC2568	14.8	38.2	9.8	33.8	0	1.8	0	0	signalling.receptor kinases.leucine rich repeat XI	"protein kinase family protein  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G24240.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G48940.1"
MSGI1_10942	TC2568	14.8	38.2	9.8	33.8	0	1.8	0	0	cell wall	"protein kinase family protein  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G24240.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G48940.1"
MSGI1_5285	TC2577	20.3	21.7	133.5	13.6	0	-3.3	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_5985	TC2580	18.2	39.8	12.1	34.7	0	1.5	0	0	RNA.regulation of transcription.TCP transcription factor family	"TCP family transcription factor, putative  similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G72010.1); similar to TCP transcription factor [Medicago truncatula] (GB:ABE87744.1); contains InterPro domain TCP transcripti"
MSGI1_20311	TC2591	54.6	78.3	168.8	132.4	0	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_2301	TC2594	10	8.6	32	5.8	0	-2.5	-1.7	0	transport.unspecified anions	CLC-B (chloride channel protein B); anion channel/ voltage-gated chloride channel member of Anion channel protein family Identical to Chloride channel protein CLC-b (AtCLC-b) (CLC-B) [Arabidopsis Thaliana] (GB:P92942); similar to chloride channel-like (C
MSGI1_16008	TC2595	10.4	14.9	41.2	23.4	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_58256	TC2596	8.8	12	50.7	16.9	0	-1.6	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_3508	TC2604	21.2	66.1	71.1	47.4	1.6	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_2027	TC262	33.9	41.1	55.1	101.7	0	0	0	-1.3	protein.targeting.nucleus	AT-IMP (Arabidopsis thaliana importin alpha); protein transporter Encodes importin alpha involved in nuclear import. Identical to Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) (KAP1) [Arabidopsis Thaliana] (GB:Q96321;GB:O49599;GB:O81
MSGI1_11317	TC2620	25.7	61	51.4	35.2	1.2	0	0	0	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to IKU2 (HAIKU2), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G19700.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TA"
MSGI1_11317	TC2620	25.7	61	51.4	35.2	1.2	0	0	0	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to IKU2 (HAIKU2), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G19700.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TA"
MSGI1_23082	TC2622	40.3	25.4	34	176.4	0	2.4	0	-2.8	not assigned.unknown	not assigned.unknown
MSGI1_23150	TC2623	0.1	0.6	25.8	206.6	0	3	-8	-8.4	not assigned.unknown	not assigned.unknown
MSGI1_2801	TC2626	29	8	25.3	5.4	-1.9	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_1776	TC2630	25.3	75.7	45.4	53.1	1.6	0	0	0	RNA.regulation of transcription.bZIP transcription factor family	AHBP-1B (bZIP transcription factor HBP-1b homolog); DNA binding / transcription factor Transcription factor of the B-ZIP family that has high affinity for C-box motifs. Interacts with NPR1 and may regulate PR gene expression. Phosphorylated by a CK2-like
MSGI1_9803	TC2638	18	14.1	31.6	46.3	0	0	0	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_7957	TC2658	11.5	15.8	82.8	23.3	0	-1.8	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_9148	TC266	36.9	104.3	38.1	47.8	1.5	0	0	1.1	protein.targeting.nucleus	AT-IMP (Arabidopsis thaliana importin alpha); protein transporter Encodes importin alpha involved in nuclear import. Identical to Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) (KAP1) [Arabidopsis Thaliana] (GB:Q96321;GB:O49599;GB:O81
MSGI1_6584	TC2660	132.5	265	110.8	167.5	1	0	0	0	cell wall.modification	"XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9); hydrolase, acting on glycosyl bonds encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and"
MSGI1_2147	TC2664	23.8	42.1	119.2	25	0	-2.3	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_2979	TC2670	5	5.7	78.7	68.7	0	0	-4	-3.6	amino acid metabolism.degradation.aromatic aa.tyrosine	"fumarylacetoacetase, putative  similar to fumarylacetoacetase [Medicago truncatula] (GB:ABD33010.1); similar to Os02g0196800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046195.1); contains InterPro domain Fumarylacetoacetate (FAA) hydrolase; (Inte"
MSGI1_1456	TC268	45.6	34	12	27.5	0	0	1.9	0	hormone metabolism.auxin.signal transduction	ARF8 (AUXIN RESPONSE FACTOR 8); transcription factor Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF6 to control stamen elongation and flower maturation. Exp
MSGI1_1456	TC268	45.6	34	12	27.5	0	0	1.9	0	"RNA.regulation of transcription.ARF, Auxin Response Factor family"	ARF8 (AUXIN RESPONSE FACTOR 8); transcription factor Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF6 to control stamen elongation and flower maturation. Exp
MSGI1_19935	TC2686	33.2	10.8	15.2	22.8	-1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_7257	TC2687	39.3	61	34.9	82.5	0	1.2	0	0	cell wall	"APT5 (ADENINE PHOSPHORIBOSYLTRANSFERASE 5); adenine phosphoribosyltransferase  similar to APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2), adenine phosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT1G80050.1); similar to adenine phosphoribosyltransfera"
MSGI1_7257	TC2687	39.3	61	34.9	82.5	0	1.2	0	0	nucleotide metabolism.salvage.phosphoribosyltransferases.aprt	"APT5 (ADENINE PHOSPHORIBOSYLTRANSFERASE 5); adenine phosphoribosyltransferase  similar to APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2), adenine phosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT1G80050.1); similar to adenine phosphoribosyltransfera"
MSGI1_9120	TC2693	10.7	8.5	29.8	8.6	0	-1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_15735	TC27	87.9	26.1	51	134.5	-1.8	1.4	0	-2.4	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_9518	TC270	184.2	90.1	247.2	180.3	-1	0	0	-1	not assigned.unknown	not assigned.unknown
MSGI1_13708	TC2700	110.3	43	20.1	19.4	-1.4	0	2.5	0	DNA.repair	DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); protein binding Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. Identical to DNA-damage-repair/toleration protein DRT100 precursor (DRT100) [Arabidopsis Thaliana] (GB:Q00874;G
MSGI1_13708	TC2700	110.3	43	20.1	19.4	-1.4	0	2.5	0	cell wall	DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); protein binding Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. Identical to DNA-damage-repair/toleration protein DRT100 precursor (DRT100) [Arabidopsis Thaliana] (GB:Q00874;G
MSGI1_15300	TC2703	76.3	75	19	44.2	0	1.2	2	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to lipid binding [Arabidopsis thaliana] (TAIR:AT5G55410.2); similar to MtN5 [Medicago truncatula] (GB:CAA75593.1); contains InterPro domain Plant lipid transfer/seed stor
MSGI1_52796	TC271	163.6	71.1	61.1	106.6	-1.2	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_26495	TC2713	21.6	24.3	127.6	31.1	0	-2	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_9719	TC2734	18.6	72.3	43.8	17.5	2	0	0	2	stress	STZ (SALT TOLERANCE ZINC FINGER); nucleic acid binding / transcription factor/ zinc ion binding Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by
MSGI1_9719	TC2734	18.6	72.3	43.8	17.5	2	0	0	2	RNA.regulation of transcription.C2H2 zinc finger family	STZ (SALT TOLERANCE ZINC FINGER); nucleic acid binding / transcription factor/ zinc ion binding Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by
MSGI1_7109	TC2755	78.3	11.2	5.2	11.4	-2.8	0	3.9	0	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit At1g60390 precursor (Aromatic-rich glycoprotein At1g60390) [Arabidopsis Thaliana] (GB:O80760); similar to JP630, polygalacturonase"
MSGI1_16196	TC2756	18.3	17.2	43.3	14.8	0	-1.5	0	0	transport.amino acids	amino acid permease family protein  similar to amino acid permease family protein [Arabidopsis thaliana] (TAIR:AT3G19553.1); similar to Amino acid/polyamine transporter I [Medicago truncatula] (GB:ABE78683.1); contains InterPro domain Amino acid permease-
MSGI1_1556	TC2758	7.2	21.3	1.4	1.9	0	0	0	3.5	not assigned.unknown	not assigned.unknown
MSGI1_13266	TC2763	54.9	0.3	5.6	0.4	-7.5	0	3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_5319	TC2768	14.3	31	39.1	29.1	0	0	-1.5	0	lipid metabolism.Phospholipid synthesis	phosphatidyl serine synthase family protein  similar to Os01g0118300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041859.1); similar to phosphatidylserine synthase [Dictyostelium discoideum AX4] (GB:XP_001134578.1); similar to Os05g0554400 [Oryza sa
MSGI1_3708	TC277	68.3	120.1	156.7	132.8	0	0	-1.2	0	polyamine metabolism.synthesis.SAM decarboxylase	adenosylmethionine decarboxylase family protein  Identical to S-adenosylmethionine decarboxylase proenzyme 2 (EC 4.1.1.50) (AdoMetDC 2) (SamDC 2) [Contains: S-adenosylmethionine decarboxylase 2 alpha chain; S-adenosylmethionine decarboxylase 2 beta chain]
MSGI1_7721	TC2777	15.3	14.6	44.4	11.8	0	-1.9	-1.5	0	"RNA.regulation of transcription.CCAAT box binding factor family, HAP5"	HAP5B (Heme activator protein (yeast) homolog 5B); DNA binding / transcription factor Encodes a protein with similarity to a subunit of  the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetativ
MSGI1_7708	TC2780	28.3	16.4	82.3	17	0	-2.3	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_10424	TC2782	37.4	17.8	54.5	23.2	0	-1.2	0	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	"protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)  similar to lipid transfer protein-related [Arabidopsis thaliana] (TAIR:AT2G44300.1); similar to Protease inhibitor/seed storage/LTP family protein, expressed [Oryza sativ"
MSGI1_5131	TC2786	43.9	12.5	8.1	8.3	-1.8	0	2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_25579	TC2789	11.6	53.1	13.8	26.2	2.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_21813	TC279	44.8	33.5	0.3	0	0	0	7.2	6.1	not assigned.unknown	not assigned.unknown
MSGI1_16104	TC2799	91.5	45.6	57.5	72.8	-1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_803	TC28	122.1	265.2	183.1	210.7	1.1	0	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL	"4CL2 (4-coumarate:CoA ligase 2); 4-coumarate-CoA ligase encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order:  p-co"
MSGI1_12901	TC280	21.7	14.4	1.7	1.7	0	0	3.7	3.1	not assigned.unknown	not assigned.unknown
MSGI1_262	TC281	17.1	17.8	2	0.4	0	0	3.1	5.5	stress.biotic	"disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT1G47890.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE79507.1); contains Inter"
MSGI1_262	TC281	17.1	17.8	2	0.4	0	0	3.1	5.5	cell wall	"disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT1G47890.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE79507.1); contains Inter"
MSGI1_3270	TC2811	16.6	48.5	53.4	38.3	1.5	0	-1.7	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.COMT	ATOMT1 (O-METHYLTRANSFERASE 1) A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay.  AtOMT1 (At5g54160) encodes a flavonol 3?-O-methyltransferase that is highly active towards quercetin and myr
MSGI1_5092	TC282	19	25.3	1.1	1.1	0	0	4.1	4.5	stress.biotic	disease resistance family protein  similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G23120.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT1G71400.1); similar to disease re
MSGI1_5092	TC282	19	25.3	1.1	1.1	0	0	4.1	4.5	cell wall	disease resistance family protein  similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G23120.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT1G71400.1); similar to disease re
MSGI1_3185	TC2827	16.4	21.6	54.3	32	0	0	-1.7	0	cell wall	"FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to EDA28/MEE23 (embryo sac development arrest 28, maternal effect embryo arrest 23), electron carrier [Arabidopsis"
MSGI1_3185	TC2827	16.4	21.6	54.3	32	0	0	-1.7	0	secondary metabolism.N misc.alkaloid-like	"FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to EDA28/MEE23 (embryo sac development arrest 28, maternal effect embryo arrest 23), electron carrier [Arabidopsis"
MSGI1_3185	TC2827	16.4	21.6	54.3	32	0	0	-1.7	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to EDA28/MEE23 (embryo sac development arrest 28, maternal effect embryo arrest 23), electron carrier [Arabidopsis"
MSGI1_3185	TC2827	16.4	21.6	54.3	32	0	0	-1.7	0	cell wall	"FAD-binding domain-containing protein  similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to EDA28/MEE23 (embryo sac development arrest 28, maternal effect embryo arrest 23), electron carrier [Arabidopsis"
MSGI1_4733	TC283	33.7	40.6	0.4	0.1	0	0	6.4	8.7	cell wall	"disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT1G47890.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE79507.1); contains Inter"
MSGI1_4733	TC283	33.7	40.6	0.4	0.1	0	0	6.4	8.7	stress.biotic	"disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT1G47890.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE79507.1); contains Inter"
MSGI1_1127	TC2836	22.9	86.5	175.8	33.7	1.9	-2.4	-2.9	1.4	major CHO metabolism.degradation.starch.starch cleavage	"BMY3 (beta-amylase 3); beta-amylase putative beta-amylase BMY3 (BMY3) similar to CT-BMY (BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to beta-amylase [Glycine max] (GB:CAI39245.1); contains InterPro domain Glycoside hy"
MSGI1_10732	TC2838	30.9	14.5	81	4.5	0	-4.2	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_12722	TC2839	8.2	10	27.2	6.7	0	-2	0	0	protein.degradation.ubiquitin.E3.RING	zinc finger (C3HC4-type RING finger) family protein  Identical to Probable RING-H2 finger protein ATL3D (ATL3D) [Arabidopsis Thaliana] (GB:Q9SRM0); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G43420.1);
MSGI1_5869	TC2841	5.1	3.4	23.3	20.9	0	0	-2.2	-2.6	mitochondrial electron transport / ATP synthesis.cytochrome c oxidase	membrane bound O-acyl transferase (MBOAT) family protein  similar to Os05g0144000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054621.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU90199.1); contains InterPro domain
MSGI1_9411	TC2842	4.1	3.7	20.7	9.7	0	0	-2.3	0	mitochondrial electron transport / ATP synthesis.cytochrome c oxidase	membrane bound O-acyl transferase (MBOAT) family protein  similar to Os05g0144000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054621.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU90199.1); contains InterPro domain
MSGI1_5281	TC2844	67.6	23.3	44.6	33.5	-1.5	0	0	0	protein.synthesis.misc ribososomal protein	"ribosomal protein L5 family protein  Identical to 50S ribosomal protein L5, chloroplast precursor (RPL5) [Arabidopsis Thaliana] (GB:O04603); similar to 50S ribosomal protein L5, chloroplast (GB:P82192); contains InterPro domain Ribosomal protein L5; (Int"
MSGI1_13045	TC2847	21.2	4.6	18.6	4.7	-2.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_4450	TC285	12.9	17	0.1	0	0	0	7	5.1	stress.biotic	"disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT1G47890.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE79507.1); contains Inter"
MSGI1_4450	TC285	12.9	17	0.1	0	0	0	7	5.1	cell wall	"disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT1G47890.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE79507.1); contains Inter"
MSGI1_25217	TC2852	11.5	44.2	16.7	7.2	1.9	0	0	2.6	not assigned.unknown	not assigned.unknown
MSGI1_6048	TC2853	23.9	15.3	4.3	7	0	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_8957	TC2855	5.4	10.4	40.3	9.7	0	-2.1	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_5068	TC2858	77.3	168.4	47.8	98.7	1.1	1	0	0	cell wall.cell wall proteins.AGPs	FLA12 (fasciclin-like arabinogalactan-protein 12)  Identical to Fasciclin-like arabinogalactan protein 12 precursor (FLA12) [Arabidopsis Thaliana] (GB:Q8LEE9;GB:Q94EG7;GB:Q9FKJ8); similar to FLA11 (fasciclin-like arabinogalactan-protein 11) [Arabidopsis t
MSGI1_28096	TC286	6.1	12.7	0	0.1	0	0	0	7	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to BAM2 (big apical meristem 2), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT3G49670.1); similar to CLAVATA1 receptor kinase (CLV1) [Arabidopsis thaliana"
MSGI1_6605	TC2862	15.4	1.4	24.3	1.2	-3.5	-4.3	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_6605	TC2862	15.4	1.4	24.3	1.2	-3.5	-4.3	0	0	misc.GDSL-motif lipase	GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G42990.1); similar to GDSL-motif lipase/hydrolase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22300.1); similar to
MSGI1_23743	TC2863	12.9	1.6	22.9	1.2	0	-4.3	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_23743	TC2863	12.9	1.6	22.9	1.2	0	-4.3	0	0	misc.GDSL-motif lipase	GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G42990.1); similar to GDSL-motif lipase/hydrolase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22300.1); similar to
MSGI1_3604	TC2864	54.8	20.7	19	39.4	-1.4	0	1.5	0	cell wall.modification	"xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 32 precursor (EC 2.4.1.207) (At-XTH32) (XTH-32) (XT"
MSGI1_5298	TC287	24.5	24.6	2.3	1.5	0	0	3.4	4	cell wall	"disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT1G47890.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE79507.1); contains Inter"
MSGI1_5298	TC287	24.5	24.6	2.3	1.5	0	0	3.4	4	stress.biotic	"disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT1G47890.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE79507.1); contains Inter"
MSGI1_15011	TC2870	55.1	37.3	223.7	33.9	0	-2.7	-2	0	signalling.phosphinositides.phosphoinositide phospholipase C	"ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phosp"
MSGI1_15011	TC2870	55.1	37.3	223.7	33.9	0	-2.7	-2	0	lipid metabolism.lipid degradation.lysophospholipases.phosphoinositide phospholipase C	"ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phosp"
MSGI1_8288	TC2883	36.4	93	77.8	72	1.4	0	-1.1	0	protein.degradation.ubiquitin.E2	UBC13 (ubiquitin-conjugating enzyme 13); ubiquitin-protein ligase  Identical to Ubiquitin-conjugating enzyme E2 13 (EC 6.3.2.19) (Ubiquitin-protein ligase 13) (Ubiquitin carrier protein 13) (UBC13) [Arabidopsis Thaliana] (GB:Q42541); similar to UBC14 (ub
MSGI1_21879	TC2886	10.1	16	35.3	30.1	0	0	-1.8	0	protein.postranslational modification	"protein phosphatase 2C, putative / PP2C, putative  similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT4G31860.1); similar to Os06g0651600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058229.1); similar to Os"
MSGI1_21541	TC2893	39.8	58.7	18.9	44.7	0	1.2	0	0	cell wall.modification	"ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to E"
MSGI1_7230	TC2894	27.6	67.3	54.1	36	1.3	0	0	0	protein.degradation.ubiquitin.E2	"UBC20 (ubiquitin-conjugating enzyme 20); ubiquitin-protein ligase Encodes one of two ubiquitin-conjugating enzymes  belonging to the E2-C gene family (the other being UBC19). Transcript is always found in diving cells, but also in other non-dividing cell"
MSGI1_14866	TC2895	11.3	60.7	24.6	17.1	2.4	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_17156	TC2907	57.1	26.5	21.4	30.1	-1.1	0	1.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L35 (RPL35D)  Identical to 60S ribosomal protein L35-4 (RPL35D) [Arabidopsis Thaliana] (GB:Q9LZ41); similar to 60S ribosomal protein L35 (RPL35B) [Arabidopsis thaliana] (TAIR:AT2G39390.1); similar to 60S ribosomal protein L35 (RPL35A
MSGI1_30697	TC2914	5.1	14.6	47.5	13.6	0	-1.8	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_14299	TC2915	9.2	22.1	11.5	5.3	0	0	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_76439	TC2919	52.9	38.7	23.2	11	0	0	1.2	1.8	secondary metabolism.simple phenols	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_27805	TC2923	16	21.4	70.3	24.3	0	-1.5	-2.1	0	cell wall	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein  similar to NHL12 (NDR1/HIN1-like 12) [Arabidopsis thaliana] (TAIR:AT2G35960.1); similar to Harpin-induced 1 [Medicago truncatula] (GB:ABD32713.1); contains InterPro do
MSGI1_17512	TC293	15.7	18.5	0.8	0.8	0	0	4.3	4.5	not assigned.unknown	not assigned.unknown
MSGI1_5716	TC2931	8.8	10.1	55.5	37.9	0	0	-2.7	-1.9	development.unspecified	"TOM2A (TOBAMOVIRUS MULTIPLICATION 2A) TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal, essential for efficient multiplication of tobacco mosaic viruses. similar to unknown protein [Arabidopsi"
MSGI1_8063	TC2937	10.4	11.4	27.7	6.1	0	-2.2	0	0	stress.biotic	"disease resistance protein (CC-NBS-LRR class), putative  similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G58400.1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thalian"
MSGI1_29557	TC2940	26	25.8	6.8	19	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_2866	TC2942	75.2	94.6	16.2	10.6	0	0	2.2	3.2	not assigned.unknown	not assigned.unknown
MSGI1_33251	TC2943	26.6	149.1	51.5	26.4	2.5	0	0	2.5	not assigned.unknown	not assigned.unknown
MSGI1_26140	TC2944	3.7	22.7	3.7	1.5	2.6	0	0	3.9	not assigned.unknown	not assigned.unknown
MSGI1_23483	TC2945	53.7	40.3	219.1	49.1	0	-2.2	-2	0	RNA.regulation of transcription.C2H2 zinc finger family	C2 domain-containing protein  similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G01540.1); similar to C2 [Medicago truncatula] (GB:ABE89197.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/l
MSGI1_6604	TC2948	35.4	18.6	8.6	18.6	0	0	2	0	major CHO metabolism.synthesis.starch.AGPase	ADP-glucose pyrophosphorylase family protein  similar to ADP-glucose pyrophosphorylase family protein [Arabidopsis thaliana] (TAIR:AT2G04650.1); similar to putative GDP-mannose pyrophosphorylase [Linum usitatissimum] (GB:ABF48494.1); similar to Os03g02089
MSGI1_7981	TC2953	64.5	2.2	18.7	2.2	-4.9	-3.1	1.8	0	cell wall	"pepsin A  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G54400.1); similar to Peptidase A1, pepsin [Medicago truncatula] (GB:ABE83791.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro"
MSGI1_7981	TC2953	64.5	2.2	18.7	2.2	-4.9	-3.1	1.8	0	RNA.regulation of transcription.putative transcription regulator	"pepsin A  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G54400.1); similar to Peptidase A1, pepsin [Medicago truncatula] (GB:ABE83791.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro"
MSGI1_2596	TC2961	10.3	4.8	101.6	3.9	0	-4.7	-3.3	0	minor CHO metabolism.raffinose family.raffinose synthases.known	"SIP1 (SEED IMBIBITION 1-LIKE); galactinol-sucrose galactosyltransferase/ hydrolase, hydrolyzing O-glycosyl compounds Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount o"
MSGI1_7623	TC2967	9.2	23	31.1	17	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_19470	TC2970	32.6	7.2	38.3	8.9	-2.2	-2.1	0	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to lipase, putative [Arabidopsis thaliana] (TAIR:AT1G28650.1); similar to Os03g0844600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051872.1); similar to hypothetical protein [Oryza sativa (japoni"
MSGI1_19470	TC2970	32.6	7.2	38.3	8.9	-2.2	-2.1	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_14816	TC2980	11.8	18.1	41.3	11.9	0	-1.8	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_996	TC30	67.4	149.7	233.2	133	1.2	0	-1.8	0	stress.abiotic.heat	HSP70 (heat shock protein 70); ATP binding  similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G
MSGI1_25146	TC300	39.5	10.3	12.2	16.6	-1.9	0	1.7	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_17511	TC3019	80.2	35.5	73.3	90.6	-1.2	0	0	-1.4	protein.synthesis.misc ribososomal protein	60S ribosomal protein L30 (RPL30A)  Identical to Putative 60S ribosomal protein L30-1 (RPL30A) [Arabidopsis Thaliana] (GB:Q9C8F7); similar to 60S ribosomal protein L30 (RPL30B) [Arabidopsis thaliana] (TAIR:AT1G77940.1); similar to 60S ribosomal protein L3
MSGI1_17610	TC3020	17.8	56.5	5.1	7.8	1.7	0	0	2.9	cell wall	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_17610	TC3020	17.8	56.5	5.1	7.8	1.7	0	0	2.9	"misc.oxidases - copper, flavone etc."	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_26288	TC3024	4.5	6.5	30.8	54.5	0	0	-2.8	-3.1	cell wall	"SCPL31 (serine carboxypeptidase-like 31); serine carboxypeptidase  similar to SCPL30 (serine carboxypeptidase-like 30), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT4G15100.1); similar to serine carboxypeptidase S10 family protein [Arabidopsis"
MSGI1_26288	TC3024	4.5	6.5	30.8	54.5	0	0	-2.8	-3.1	protein.degradation.serine protease	"SCPL31 (serine carboxypeptidase-like 31); serine carboxypeptidase  similar to SCPL30 (serine carboxypeptidase-like 30), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT4G15100.1); similar to serine carboxypeptidase S10 family protein [Arabidopsis"
MSGI1_1872	TC3026	8.8	3	56.9	2.2	0	-4.7	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_18957	TC3038	5.2	11	24.8	12.2	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_26428	TC3040	18.2	7.9	35.7	3.6	0	-3.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_14121	TC3047	1.6	5.2	63.9	2.5	0	-4.7	-5.3	0	secondary metabolism.unspecified	carbonic anhydrase family protein / carbonate dehydratase family protein  similar to carbonate dehydratase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G58180.3); similar to Os09g0464000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063409.1);
MSGI1_14121	TC3047	1.6	5.2	63.9	2.5	0	-4.7	-5.3	0	TCA / org. transformation.carbonic anhydrases	carbonic anhydrase family protein / carbonate dehydratase family protein  similar to carbonate dehydratase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G58180.3); similar to Os09g0464000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063409.1);
MSGI1_26221	TC3055	56.2	20.9	40	36	-1.4	0	0	0	cell.division	"ribosome recycling factor, chloroplast, putative / ribosome releasing factor, chloroplast, putative  Identical to Ribosome recycling factor, chloroplast precursor (Ribosome-releasing factor, chloroplast) (RRF) (CpFrr) (RRFHCP) (RRF) [Arabidopsis Thaliana"
MSGI1_61809	TC3058	8.8	12.4	57.5	16.9	0	-1.8	-2.7	0	cell wall.modification	"ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1) member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-like A1 precursor (AtEXLA1) (AtEXPL1) (At-EXPL1) (Ath- ExpBeta-2.1) (EXLA1"
MSGI1_14568	TC3065	16.3	15.1	47.2	13.6	0	-1.8	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_23081	TC3085	41.9	70.8	2	7.5	0	0	4.4	3.2	not assigned.unknown	not assigned.unknown
MSGI1_14659	TC3087	10.1	9.4	34.5	9.6	0	-1.8	-1.8	0	transport.ABC transporters and multidrug resistance systems	ATMRP5 (Arabidopsis thaliana multidrug resistance-associated protein 5) member of MRP subfamily Identical to Multidrug resistance-associated protein 5 (EC 3.6.3.44) (Glutathione S-conjugate-transporting ATPase 5) (ATP-energized glutathione S- conjugate p
MSGI1_12278	TC3090	104.2	101.5	259.8	93.8	0	-1.5	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_19643	TC3092	36.5	13.2	33.5	21.6	-1.5	0	0	0	cell.division	"ribosome recycling factor, chloroplast, putative / ribosome releasing factor, chloroplast, putative  Identical to Ribosome recycling factor, chloroplast precursor (Ribosome-releasing factor, chloroplast) (RRF) (CpFrr) (RRFHCP) (RRF) [Arabidopsis Thaliana"
MSGI1_57032	TC3096	64.9	62.9	24.9	16.2	0	0	1.4	2	not assigned.unknown	not assigned.unknown
MSGI1_17358	TC3097	2.8	3.4	47.9	42.7	0	0	-4.1	-3.7	not assigned.unknown	not assigned.unknown
MSGI1_11428	TC3098	6	23.9	65.3	28	2	-1.2	-3.4	0	"RNA.regulation of transcription.CCAAT box binding factor family, HAP3"	CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family  Identical to Nuclear transcription factor Y subunit B-3 (AtNF-YB-3) (Transcriptional activator HAP3C) (NFYB3) [Arabidopsis Thaliana] (GB:O23310); similar to CCAAT-box bindin
MSGI1_551	TC31	146.8	154.3	62.9	87.2	0	0	1.2	0	cell wall	"subtilase family protein  similar to AIR3 (Auxin-Induced in Root cultures 3), subtilase [Arabidopsis thaliana] (TAIR:AT2G04160.1); similar to subtilisin-like protease [Triticum aestivum] (GB:CAJ75644.1); similar to subtilisin-like protease [Glycine max]"
MSGI1_551	TC31	146.8	154.3	62.9	87.2	0	0	1.2	0	protein.degradation.subtilases	"subtilase family protein  similar to AIR3 (Auxin-Induced in Root cultures 3), subtilase [Arabidopsis thaliana] (TAIR:AT2G04160.1); similar to subtilisin-like protease [Triticum aestivum] (GB:CAJ75644.1); similar to subtilisin-like protease [Glycine max]"
MSGI1_67759	TC310	63.6	59	0	0	0	0	7	6.9	not assigned.unknown	not assigned.unknown
MSGI1_9978	TC3104	120.9	67.6	50.6	82.7	0	0	1.3	0	protein.synthesis.misc ribososomal protein	"EMB3010 (EMBRYO DEFECTIVE 3010); structural constituent of ribosome  Identical to 40S ribosomal protein S6-2 (RPS6B) [Arabidopsis Thaliana] (GB:P51430;GB:O04670;GB:Q9LX91); similar to RPS6 (RIBOSOMAL PROTEIN S6), structural constituent of ribosome [Arabi"
MSGI1_28094	TC3105	11	26.7	2.2	0.9	0	0	0	4.9	not assigned.unknown	not assigned.unknown
MSGI1_6177	TC311	59.4	59.3	37	71.2	0	0.9	0	0	development.unspecified	"plastid developmental protein DAG, putative  similar to plastid developmental protein DAG, putative [Arabidopsis thaliana] (TAIR:AT1G32580.1); similar to putative plastid protein [Oryza sativa (japonica cultivar-group)] (GB:BAC22214.1); similar to OSJNBa"
MSGI1_7955	TC3119	59.1	4	27.2	6.3	-3.9	-2.1	1.1	0	cell wall.pectin*esterases.misc	"pectinesterase, putative  similar to pectinesterase, putative [Arabidopsis thaliana] (TAIR:AT3G10720.2); similar to papillar cell-specific pectin methylesterase-like protein [Brassica napus] (GB:AAK84428.1); similar to Os01g0311800 [Oryza sativa (japonic"
MSGI1_21465	TC3122	0	0	16.6	18.4	0	0	-5.1	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_7304	TC3123	63.4	5.5	10.8	5	-3.5	0	2.6	0	cell wall.modification	"xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 8 precursor (EC 2.4.1.207) (At-XTH8) (XTH-8) (XTH8)"
MSGI1_10786	TC3129	31.3	5.6	33	9	-2.5	-1.9	0	0	transport.cyclic nucleotide or calcium regulated channels	"DND1 (DEFENSE NO DEATH 1); calmodulin binding / cation channel/ cyclic nucleotide binding / inward rectifier potassium channel 'defense, no death' gene (DND1) encodes a mutated cyclic nucleotide-gated cation channel; Same as CNGC2 (article ID 229): Cycli"
MSGI1_2367	TC3137	21.4	6.8	4.4	3.1	0	0	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_12088	TC3148	11.5	25.4	21.1	6.7	0	0	0	1.9	hormone metabolism.ethylene.induced-regulated-responsive-activated	ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2)  similar to ethylene-responsive nuclear protein -related [Arabidopsis thaliana] (TAIR:AT5G44350.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE900
MSGI1_6165	TC3186	11.5	2.5	0.6	0.8	0	0	4.3	0	secondary metabolism.flavonoids.dihydroflavonols.flavanone 3-dioxygenase	"F3H (TRANSPARENT TESTA 6); naringenin 3-dioxygenase Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis. Identical to Naringenin,2-oxoglutarate 3-dioxygenase (EC"
MSGI1_6165	TC3186	11.5	2.5	0.6	0.8	0	0	4.3	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_51752	TC3187	12	3.6	0.6	0.3	0	0	4.3	0	secondary metabolism.flavonoids.dihydroflavonols.flavanone 3-dioxygenase	"F3H (TRANSPARENT TESTA 6); naringenin 3-dioxygenase Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis. Identical to Naringenin,2-oxoglutarate 3-dioxygenase (EC"
MSGI1_51752	TC3187	12	3.6	0.6	0.3	0	0	4.3	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_7954	TC3196	22.5	14.2	46.2	15	0	-1.6	0	0	amino acid metabolism.synthesis.aromatic aa.phenylalanine and tyrosine.chorismate mutase	"ATCM2 (CHORISMATE MUTASE 2); chorismate mutase Encodes chorismate mutase AtCM2. similar to CM1 (chorismate mutase 1), chorismate mutase [Arabidopsis thaliana] (TAIR:AT3G29200.1); similar to chorismate mutase [Medicago truncatula] (GB:ABE94587.1); contain"
MSGI1_27803	TC3198	47	8.2	10.3	7.6	-2.5	0	2.2	0	cell wall.modification	"ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3) putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thal"
MSGI1_15384	TC32	230.9	130.6	94.9	134	0	0	1.3	0	stress.abiotic.heat	HSP70 (heat shock protein 70); ATP binding  similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G
MSGI1_3140	TC3209	14.2	15.1	41.4	7.8	0	-2.4	-1.5	0	protein.degradation.subtilases	"SLP2 (subtilisin-like serine protease 2); subtilase Serine protease similar to subtilisin. similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to su"
MSGI1_3140	TC3209	14.2	15.1	41.4	7.8	0	-2.4	-1.5	0	cell wall	"SLP2 (subtilisin-like serine protease 2); subtilase Serine protease similar to subtilisin. similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to su"
MSGI1_36761	TC321	27.8	4.8	12	16.7	-2.5	0	0	0	signalling.receptor kinases.leucine rich repeat VIII-2	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G53430.1); similar to leucine-rich repeat family protein / protein kinase family pro"
MSGI1_12478	TC3211	13.6	15	1.5	5.8	0	0	3.2	0	secondary metabolism.flavonoids.anthocyanins	glycosyltransferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT5G65550.1); similar to putative anthocyanidine rhamnosyl-transferase [Capsicum annuum] (GB:AAM12787.1); contains InterPr
MSGI1_9477	TC3217	39.4	9.1	13	9.3	-2.1	0	1.6	0	amino acid metabolism.synthesis.aspartate family.misc.homoserine.bifunctional aspartate kinase/homoserine dehydrogenase	"AK-HSDH/AK-HSDH II; aspartate kinase/ homoserine dehydrogenase Encodes a bifunctional aspartate kinase/homoserine dehydrogenase.  These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, iso"
MSGI1_8980	TC3223	6.3	6.5	67.3	4.8	0	-3.8	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_40959	TC3237	27.7	28	182.4	80.6	0	-1.2	-2.7	-1.5	fermentation.aldehyde dehydrogenase	ALDH7B4 (ALDEHYDE DEHYDROGENASE 7B4); 3-chloroallyl aldehyde dehydrogenase Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 7B4 (EC 1.2.1.3) (Antiquitin-1) (Turgor- responsive ALDH) (ALDH7B4) [Arabidopsis Thaliana] (GB:Q9SYG7;GB:Q546B7); simila
MSGI1_3624	TC324	49.4	31.2	145.1	14.4	0	-3.3	-1.6	0	"misc.gluco-, galacto- and mannosidases"	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT3G52840.1)"
MSGI1_3624	TC324	49.4	31.2	145.1	14.4	0	-3.3	-1.6	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT3G52840.1)"
MSGI1_15298	TC3242	6.5	40.9	26.7	27.8	2.7	0	-2	0	hormone metabolism.gibberelin.induced-regulated-responsive-activated	gibberellin-regulated family protein  similar to ATEPR1 (Arabidopsis thaliana extensin proline-rich 1) [Arabidopsis thaliana] (TAIR:AT2G27380.1); similar to hypothetical protein [Brassica napus var. napus] (GB:AAS68179.1); contains InterPro domain Pistil-
MSGI1_15298	TC3242	6.5	40.9	26.7	27.8	2.7	0	-2	0	cell wall	gibberellin-regulated family protein  similar to ATEPR1 (Arabidopsis thaliana extensin proline-rich 1) [Arabidopsis thaliana] (TAIR:AT2G27380.1); similar to hypothetical protein [Brassica napus var. napus] (GB:AAS68179.1); contains InterPro domain Pistil-
MSGI1_8430	TC3244	14	12.7	36.1	7.8	0	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_13145	TC3247	77.9	36.5	46.8	35.4	-1.1	0	0	0	mitochondrial electron transport / ATP synthesis.F1-ATPase	"mitochondrial ATP synthase g subunit family protein  similar to hydrogen ion transporting ATP synthase, rotational mechanism / hydrogen ion transporting ATPase, rotational mechanism [Arabidopsis thaliana] (TAIR:AT2G19680.2); similar to unknown [Solanum t"
MSGI1_550	TC325	122.5	426.3	135.8	286.8	1.8	1.1	0	0	"misc.gluco-, galacto- and mannosidases"	"BGAL12 (beta-galactosidase 12); beta-galactosidase putative beta-galactosidase similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis"
MSGI1_550	TC325	122.5	426.3	135.8	286.8	1.8	1.1	0	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL12 (beta-galactosidase 12); beta-galactosidase putative beta-galactosidase similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis"
MSGI1_44011	TC3263	20	29.6	0.1	0.6	0	0	7.6	5.6	not assigned.unknown	not assigned.unknown
MSGI1_28646	TC327	0.9	0.5	13.8	1	0	-3.8	-3.9	0	"misc.gluco-, galacto- and mannosidases"	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT3G52840.1)"
MSGI1_28646	TC327	0.9	0.5	13.8	1	0	-3.8	-3.9	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"beta-galactosidase, putative / lactase, putative  similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT3G52840.1)"
MSGI1_4042	TC328	60.9	39.5	185.5	14.2	0	-3.7	-1.6	1.5	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL1 (BETA GALACTOSIDASE 1); beta-galactosidase beta-galactosidase, glycosyl hydrolase family 35 similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1); similar to BGAL3 (beta-galactosidase 3), beta-galacto"
MSGI1_4042	TC328	60.9	39.5	185.5	14.2	0	-3.7	-1.6	1.5	"misc.gluco-, galacto- and mannosidases"	"BGAL1 (BETA GALACTOSIDASE 1); beta-galactosidase beta-galactosidase, glycosyl hydrolase family 35 similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1); similar to BGAL3 (beta-galactosidase 3), beta-galacto"
MSGI1_24340	TC3280	185.6	112.4	73.4	115.1	0	0	1.3	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L36a/L44 (RPL36aB)  Identical to 60S ribosomal protein L36a (RPL36AB) [Arabidopsis Thaliana] (GB:O23290;GB:Q7GD84); similar to 60S ribosomal protein L36a/L44 (RPL36aA) [Arabidopsis thaliana] (TAIR:AT3G23390.1); similar to 60S ribosom
MSGI1_24093	TC3289	31.3	7.3	17.3	3.7	-2.1	0	0	0	stress.abiotic.cold	"RCI3 (RARE COLD INDUCIBLE GENE 3); peroxidase Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but onl"
MSGI1_2843	TC329	37.9	65	99	76.4	0	0	-1.4	0	protein.degradation.ubiquitin.E3.SCF.FBOX	F-box family protein  similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE79796.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810)
MSGI1_2909	TC3291	42.8	23.3	13.8	9.4	0	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_58579	TC33	11.5	13.2	82.7	111.9	0	0	-2.8	-3.1	protein.degradation.subtilases	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_31105	TC3300	154	58.6	43	68	-1.4	0	1.8	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L37a (RPL37aB)  Identical to Putative 60S ribosomal protein L37a-1 (RPL37AB) [Arabidopsis Thaliana] (GB:Q9SRK6); similar to 60S ribosomal protein L37a (RPL37aC) [Arabidopsis thaliana] (TAIR:AT3G60245.1); similar to 60S ribosomal prot
MSGI1_8826	TC3304	13.6	42.3	40	59.9	1.6	0	-1.6	0	amino acid metabolism.synthesis.aromatic aa.phenylalanine.arogenate dehydratase / prephenate dehydratase	PD1 (PREPHENATE DEHYDRATASE 1); prephenate dehydratase  similar to prephenate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT1G08250.1); similar to prephenate dehydratase [Ipomoea trifida] (GB:AAS79603.1); contains InterPro domain Prephenate de
MSGI1_13144	TC3308	26	12.6	5.1	11.2	0	0	2.3	0	DNA.synthesis/chromatin structure	"DNA replication licensing factor, putative  similar to minichromosome maintenance family protein / MCM family protein [Arabidopsis thaliana] (TAIR:AT5G44635.1); similar to MCM; Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABE88371.1); similar"
MSGI1_6472	TC3309	14.2	21.5	38.8	11.5	0	-1.8	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_26765	TC3320	1.9	2.3	35.9	1.1	0	-5	-4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_51157	TC3328	3.4	3.6	20.6	12	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_32138	TC3331	12.8	12.4	0	0	0	0	4.7	4.6	not assigned.unknown	not assigned.unknown
MSGI1_20984	TC3339	87.1	3.6	16.7	1.6	-4.6	-3.4	2.4	0	RNA.regulation of transcription.putative transcription regulator	"pepsin A  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G54400.1); similar to Peptidase A1, pepsin [Medicago truncatula] (GB:ABE83791.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro"
MSGI1_12782	TC3341	14	58.2	17.7	15.6	2.1	0	0	1.9	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	"lipase class 3 family protein  similar to DAD1 (DEFECTIVE ANTHER DEHISCENCE 1), triacylglycerol lipase [Arabidopsis thaliana] (TAIR:AT2G44810.1); similar to lipase-like protein [Oryza sativa] (GB:CAC39051.1); similar to Os02g0653900 [Oryza sativa (japoni"
MSGI1_13309	TC3348	17.8	1.5	9.6	1.1	-3.6	0	0	0	lipid metabolism.Phospholipid synthesis	ATGPAT6/GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase Encodes a protein with glycerol-3-phosphate acyltransferase activity. Identical to Glycerol-3-phosphate acyltransferase 6 (EC 2.3.1.15)
MSGI1_14119	TC3354	24.6	6.5	17.5	7.9	-1.9	0	0	0	misc.acid and other phosphatases	"ATPAP3/PAP3 (purple acid phosphatase 3); acid phosphatase/ protein serine/threonine phosphatase  similar to PAP8 (PURPLE ACID PHOSPHATASE PRECURSOR), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT2G01890.1); simila"
MSGI1_15841	TC3360	11.9	16.5	50.8	36.3	0	0	-2.1	0	development.unspecified	"embryo-specific protein-related  similar to embryo-specific protein-related [Arabidopsis thaliana] (TAIR:AT2G41470.1); similar to Embryo-specific 3 [Medicago truncatula] (GB:ABE79354.1); contains InterPro domain Lipase/lipooxygenase, PLAT/LH2; (InterPro:"
MSGI1_118065	TC3378	15.9	7.1	1.2	3.7	0	0	3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_598	TC338	71.6	99.4	176.5	85.1	0	0	-1.3	0	protein.degradation	UBX domain-containing protein  similar to UBX domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G23040.1); similar to Fas-associated factor 1-like protein [Capsicum annuum] (GB:AAW66458.1); contains InterPro domain UBX; (InterPro:IPR001012); conta
MSGI1_32955	TC3381	30.6	9.3	17.2	19.5	-1.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_22824	TC3387	120.5	51	56	70.4	-1.2	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_17155	TC339	206.1	162.5	800.1	211.9	0	-1.9	-2	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_17155	TC339	206.1	162.5	800.1	211.9	0	-1.9	-2	0	misc.plastocyanin-like	plastocyanin-like domain-containing protein  Identical to Early nodulin-like protein 2 precursor (Phytocyanin-like protein) [Arabidopsis Thaliana] (GB:Q9T076;GB:Q5PNT5;GB:Q8LBE5); similar to plastocyanin-like domain-containing protein [Arabidopsis thalian
MSGI1_12354	TC3391	49	28.9	16.7	21.9	0	0	1.6	0	RNA.regulation of transcription.putative transcription regulator	"PCNA2 (PROLIFERATING CELL NUCLEAR 2); DNA binding / DNA polymerase processivity factor  Identical to Proliferating cell nuclear antigen 2 (PCNA 2) [Arabidopsis Thaliana] (GB:Q9ZW35); similar to PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN), DNA binding"
MSGI1_10679	TC3393	19.9	9.8	44.3	14.1	0	-1.7	0	0	protein.degradation.AAA type	AAA-type ATPase family protein  similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT5G17740.1); similar to putative AAA-type ATPase [Oryza sativa (japonica cultivar-group)] (GB:AAT37997.1); contains InterPro domain AAA-protein subdom
MSGI1_12000	TC3396	46.4	7.4	35	13.6	-2.6	0	0	0	lipid metabolism.FA synthesis and FA elongation.acyl coa ligase	"AMP-dependent synthetase and ligase family protein  similar to 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT4G05160.1); similar to putative acyl-CoA synthetase [Capsicum annuum] (GB:AAL29212.1); si"
MSGI1_3418	TC3399	4.1	16.3	186.3	0.8	0	-7.9	-5.5	4.3	protein.degradation.ubiquitin.E3.RING	armadillo/beta-catenin repeat family protein / U-box domain-containing protein  similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G60190.1); similar to putative Avr9/Cf-9 rapidly elic
MSGI1_70731	TC34	192.1	121.1	98.5	125.6	0	0	1	0	stress.abiotic.heat	HSP70 (heat shock protein 70); ATP binding  similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G
MSGI1_5623	TC340	34.1	57.6	184.9	51.5	0	-1.8	-2.4	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_5623	TC340	34.1	57.6	184.9	51.5	0	-1.8	-2.4	0	misc.plastocyanin-like	plastocyanin-like domain-containing protein  Identical to Early nodulin-like protein 2 precursor (Phytocyanin-like protein) [Arabidopsis Thaliana] (GB:Q9T076;GB:Q5PNT5;GB:Q8LBE5); similar to plastocyanin-like domain-containing protein [Arabidopsis thalian
MSGI1_22535	TC3400	87.2	35.1	54.1	78.2	-1.3	0	0	-1.2	protein.synthesis.mito/plastid ribosomal protein.plastid	"ribosomal protein L34 family protein  Identical to 50S ribosomal protein L34, chloroplast precursor (CL34) (RPL34) [Arabidopsis Thaliana] (GB:Q9LP37); similar to 50S ribosomal protein L34, chloroplast precursor (CL34) (GB:P82244); contains InterPro domai"
MSGI1_64627	TC3404	0.1	0.2	33.5	18.4	0	0	-8.4	-6.5	not assigned.unknown	not assigned.unknown
MSGI1_116883	TC341	5.9	14.8	0	0	0	0	0	4.9	not assigned.unknown	not assigned.unknown
MSGI1_33486	TC3411	121.1	50.3	28.5	31.3	-1.3	0	2.1	0	signalling.misc	"RALFL34 (RALF-LIKE 34) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single e"
MSGI1_4534	TC3416	8.1	12	38.9	8	0	-2.3	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_31913	TC3419	6	37.1	28.9	17.1	2.6	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_14612	TC3428	259.1	62.3	73.8	55.2	-2.1	0	1.8	0	cell wall.cell wall proteins.AGPs	"FLA2 (FLA2) AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds Identical to Fasciclin-like arabinogalactan protein 2 precursor (FLA2) [Arabidopsis Thaliana] (GB:Q9SU13;GB:Q8L9T2;GB:Q9C5Q6); similar to FLA1 (F"
MSGI1_16907	TC3429	27.7	148	40.6	123.9	2.4	1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_24662	TC3438	119.4	3.1	17.4	4.2	-5.3	0	2.8	0	DNA.repair	DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); protein binding Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. Identical to DNA-damage-repair/toleration protein DRT100 precursor (DRT100) [Arabidopsis Thaliana] (GB:Q00874;G
MSGI1_4705	TC3445	0.5	0.3	109.2	188.6	0	0	-7.8	-9.3	not assigned.unknown	not assigned.unknown
MSGI1_18157	TC3446	11.3	12.9	0	0	0	0	4.5	4.7	not assigned.unknown	not assigned.unknown
MSGI1_10535	TC3455	3.5	20.2	41.8	68.1	2.5	0	-3.6	-1.8	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN1 (DARK INDUCIBLE 6) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumul"
MSGI1_12853	TC3460	237.7	611.5	596.2	629.4	1.4	0	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_11685	TC3464	24.1	5.3	47	5.2	-2.2	-3.2	0	0	N-metabolism.N-degradation.glutamate dehydrogenase	GDH1 (GLUTAMATE DEHYDROGENASE 1); oxidoreductase encodes the beta-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells. Identical to Glutamate dehydrogenase 1 (EC 1.4.1.3) (GD
MSGI1_4070	TC3466	6.2	15	85.8	11.8	0	-2.9	-3.8	0	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G22920.1); similar to Zinc finger, RING-type; Zinc finger, CHY-type [Medicago truncatula] (GB:ABE83637.1);"
MSGI1_6987	TC3470	8.8	9	13.3	29.1	0	0	0	-1.7	cell wall.modification	"ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Ide"
MSGI1_15296	TC3471	38.3	2.4	22.2	2.8	-4	-3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_8412	TC3475	58.9	59.5	23.8	37.8	0	0	1.3	0	nucleotide metabolism.phosphotransfer and pyrophosphatases.misc	"inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative  similar to inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative [Arabidopsis thaliana] (TA"
MSGI1_13976	TC3476	8.3	63.3	60.9	6.7	2.9	-3.2	-2.9	3.2	RNA.regulation of transcription.C2H2 zinc finger family	"zinc finger (C2H2 type) family protein (ZAT11)  similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT3G53600.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE93962.1); contains InterPro domain Zinc finger, C2"
MSGI1_8457	TC3479	88.9	54.6	42.6	43.2	0	0	1.1	0	protein.postranslational modification	"ADP-ribosylation factor, putative A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other AR"
MSGI1_10710	TC3493	3.6	7.6	35.3	17.9	0	0	-3.3	0	major CHO metabolism.degradation.starch.starch cleavage	AMY1 (ALPHA-AMYLASE-LIKE); alpha-amylase Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization.  Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AM
MSGI1_11475	TC3498	40.4	24.8	7.6	14.8	0	0	2.4	0	cell wall	peptidoglycan-binding LysM domain-containing protein  Identical to LysM domain GPI-anchored protein 3 precursor [Arabidopsis Thaliana] (GB:Q6NPN4;GB:Q9CAP5); similar to peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G
MSGI1_13004	TC3501	89.1	60.2	96.5	36	0	-1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_59178	TC3505	34.1	30.9	7	10.5	0	0	2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_14734	TC3511	43.2	9.1	10.2	9.1	-2.2	0	2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_5450	TC3512	152.8	110.8	41.8	58.3	0	0	1.9	0	misc.invertase/pectin methylesterase inhibitor family protein	invertase/pectin methylesterase inhibitor family protein  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT2G01610.1); similar to 21 kDa protein precursor (1.2 protein) (GB:P17407); contains InterPro domai
MSGI1_5450	TC3512	152.8	110.8	41.8	58.3	0	0	1.9	0	cell wall	invertase/pectin methylesterase inhibitor family protein  similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT2G01610.1); similar to 21 kDa protein precursor (1.2 protein) (GB:P17407); contains InterPro domai
MSGI1_9146	TC3513	2.8	7.2	21	17.7	0	0	-2.9	0	protein.degradation.ubiquitin.E3.SCF.FBOX	ATPP2-B1 (Phloem protein 2-B1)  similar to MEE66 (maternal effect embryo arrest 66) [Arabidopsis thaliana] (TAIR:AT2G02240.1); similar to Os02g0813300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048484.1); similar to Cyclin-like F-box [Medicago tru
MSGI1_9146	TC3513	2.8	7.2	21	17.7	0	0	-2.9	0	cell.organisation	ATPP2-B1 (Phloem protein 2-B1)  similar to MEE66 (maternal effect embryo arrest 66) [Arabidopsis thaliana] (TAIR:AT2G02240.1); similar to Os02g0813300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048484.1); similar to Cyclin-like F-box [Medicago tru
MSGI1_74410	TC352	188.2	119.2	376.9	266	0	0	0	-1.2	PS.lightreaction.photosystem II.LHC-II	LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding photosystem II encoding the light-harvesting chlorophyll a/b binding protein CP26 of the antenna system of the photosynthetic apparatus Identical to Chlorophyll a-b binding protein
MSGI1_6986	TC3522	15.7	17.8	60	5.3	0	-3.5	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_7868	TC3526	14.2	5.5	46.6	13.8	0	-1.8	-1.7	0	DNA.synthesis/chromatin structure	"BFN1 (BIFUNCTIONAL NUCLEASE I); nucleic acid binding bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence similar to bifunctional nuclease, putative [Ar"
MSGI1_35664	TC353	419.7	300.8	163.8	191.4	0	0	1.4	0	PS.lightreaction.photosystem II.LHC-II	LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding photosystem II encoding the light-harvesting chlorophyll a/b binding protein CP26 of the antenna system of the photosynthetic apparatus Identical to Chlorophyll a-b binding protein
MSGI1_27377	TC3537	33.9	26.8	80.4	45.2	0	0	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_20862	TC3540	75.1	2.7	39.8	0.9	-4.8	-5.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_8492	TC3547	13.7	20.6	50.2	19.4	0	-1.4	-1.9	0	protein.postranslational modification	"shaggy-related protein kinase theta / ASK-theta (ASK8)  Identical to Shaggy-related protein kinase theta (EC 2.7.11.1) (ASK-theta) (ASK8) [Arabidopsis Thaliana] (GB:Q96287;GB:P93731); similar to ATSK11 (Arabidopsis thaliana SHAGGY-related kinase 11), pro"
MSGI1_11	TC357	87.3	69.8	189.4	95.7	0	0	-1.1	0	N-metabolism.ammonia metabolism.glutamate synthase.ferredoxin dependent	GLU1 (FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1) Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression in leaves is induced by light and sucrose. Proposed to be involved in photorespiration and nitroge
MSGI1_12086	TC3570	29	36.3	74	43.8	0	0	-1.4	0	"RNA.regulation of transcription.CCAAT box binding factor family, DR1"	"TATA-binding protein-associated phosphoprotein Dr1 protein, putative (DR1)  Identical to Dr1 protein homolog (DR1) [Arabidopsis Thaliana] (GB:P49592); similar to TATA-binding protein-associated phosphoprotein Dr1 protein, putative [Arabidopsis thaliana]"
MSGI1_26961	TC3573	12.1	54.3	18.8	31.9	2.2	0	0	0	transport.misc	permease  Identical to Nucleobase-ascorbate transporter 11 (AtNAT11) (NAT11) [Arabidopsis Thaliana] (GB:Q6SZ87;GB:Q8GWX5;GB:Q8LC52;GB:Q9SZK5); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:AT2G27810.1); similar to putativ
MSGI1_12319	TC3579	0.2	0.8	399.9	0.7	0	-9.2	-11	0	not assigned.unknown	not assigned.unknown
MSGI1_17510	TC3580	33.9	6.1	11.5	5.3	-2.5	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_11501	TC3584	1.6	15.2	4	10.9	3.2	0	0	0	RNA.regulation of transcription.bZIP transcription factor family	bZIP family transcription factor  similar to bZIP family transcription factor [Arabidopsis thaliana] (TAIR:AT5G06839.1); similar to basic leucine zipper protein [Zea mays] (GB:AAC39351.1); similar to Os01g0859500 [Oryza sativa (japonica cultivar-group)]
MSGI1_6411	TC359	601.8	501	220.6	303.8	0	0	1.4	0	PS.lightreaction.photosystem I.LHC-I	LHCA4 (Photosystem I light harvesting complex gene 4); chlorophyll binding Encodes a chlorophyll a/b-binding protein that is more similar to the PSI Cab proteins than the PSII cab proteins. The predicted protein is about 20 amino acids shorter than most
MSGI1_16300	TC3593	7.6	2.6	63.4	17.2	0	-1.9	-3.1	-2.7	cell wall	"pathogenesis-related thaumatin family protein  similar to ATLP-1 (Arabidopsis thaumatin-like protein 1) [Arabidopsis thaliana] (TAIR:AT1G18250.1); similar to Thaumatin, pathogenesis-related [Medicago truncatula] (GB:ABE78554.1); contains InterPro domain"
MSGI1_16300	TC3593	7.6	2.6	63.4	17.2	0	-1.9	-3.1	-2.7	stress.biotic	"pathogenesis-related thaumatin family protein  similar to ATLP-1 (Arabidopsis thaumatin-like protein 1) [Arabidopsis thaliana] (TAIR:AT1G18250.1); similar to Thaumatin, pathogenesis-related [Medicago truncatula] (GB:ABE78554.1); contains InterPro domain"
MSGI1_18558	TC3594	7.5	27.7	14.2	15.7	1.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_8411	TC3599	8.1	19.1	76.1	14.4	0	-2.4	-3.2	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7); transcription factor encodes a putative transcription factor that contains a homeodomain closely linked to a leucine zipper motif. Transcript is detected in all tissues examined.  Is transcriptionally regulated i
MSGI1_2936	TC3601	11.9	18	18.2	46.5	0	1.4	0	-1.4	misc.misc2	"CYP77A5P (cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene); catalytic a cytochrome P450 pseudogene. the second half of the gene overlaps perfectly with the other gene model. similar to 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesiu"
MSGI1_9650	TC3606	33.9	7.7	8	3.7	-2.1	0	2.1	0	cell wall.cell wall proteins.LRR	"leucine-rich repeat family protein / extensin family protein  similar to LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2), protein binding / structural constituent of cell wall [Arabidopsis thaliana] (TAIR:AT1G62440.1); similar to leucine-rich repeat family protein"
MSGI1_3699	TC362	35.2	89.4	40	68.1	1.3	0	0	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	KNAT1 (BREVIPEDICELLUS 1); transcription factor A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem
MSGI1_8037	TC3621	26	3.9	22	14.7	-2.7	0	0	0	cell wall	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_8037	TC3621	26	3.9	22	14.7	-2.7	0	0	0	"misc.gluco-, galacto- and mannosidases"	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_8037	TC3621	26	3.9	22	14.7	-2.7	0	0	0	major CHO metabolism.degradation.starch.starch cleavage	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_8037	TC3621	26	3.9	22	14.7	-2.7	0	0	0	cell wall	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_6685	TC3622	6.6	9.3	62	7.9	0	-3	-3.2	0	transport.ABC transporters and multidrug resistance systems	ABC transporter family protein  Identical to White-brown complex homolog protein 26 (WBC26) [Arabidopsis Thaliana] (GB:Q84TH5;GB:Q949Y4;GB:Q9C8W6); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G31770.1); similar to ABC transp
MSGI1_3000	TC363	227.2	196.6	36.9	50.7	0	0	2.6	2	protein.aa activation.lysine-tRNA ligase	"lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative  Identical to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) [Arabidopsis Thaliana] (GB:Q9ZPI1); similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Ar"
MSGI1_43018	TC3630	22.8	14.7	107.4	6.6	0	-4	-2.2	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL12 (beta-galactosidase 12); beta-galactosidase putative beta-galactosidase similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis"
MSGI1_43018	TC3630	22.8	14.7	107.4	6.6	0	-4	-2.2	0	"misc.gluco-, galacto- and mannosidases"	"BGAL12 (beta-galactosidase 12); beta-galactosidase putative beta-galactosidase similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis"
MSGI1_20310	TC3638	10.6	10.9	0.2	0.4	0	0	5.7	4.8	not assigned.unknown	not assigned.unknown
MSGI1_50091	TC364	245.8	204.4	4.7	5.1	0	0	5.7	5.3	protein.aa activation.lysine-tRNA ligase	"lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative  Identical to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) [Arabidopsis Thaliana] (GB:Q9ZPI1); similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Ar"
MSGI1_24182	TC3644	2.3	16.5	5.2	7.5	2.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_111542	TC3656	1	1.1	7.1	13	0	0	0	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_15969	TC3657	26.3	28.3	74.5	14.2	0	-2.4	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_28550	TC3658	38.8	6.9	2.6	5.3	-2.5	0	3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_57679	TC366	2.4	2.8	19.3	27.7	0	0	-3	-3.3	protein.aa activation.lysine-tRNA ligase	"lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative  Identical to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) [Arabidopsis Thaliana] (GB:Q9ZPI1); similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Ar"
MSGI1_18955	TC3668	7.6	26.7	8.9	30.5	1.8	1.8	0	0	transport.sulphate	"AST68 (Sulfate transporter 2.1) Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation.  Expression in the shoot vascular system is not induced by sulfur starvation. Identical t"
MSGI1_18955	TC3668	7.6	26.7	8.9	30.5	1.8	1.8	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_9034	TC367	115.8	100.3	29.5	48.3	0	0	2	1.1	protein.aa activation.lysine-tRNA ligase	"lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative  Identical to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) [Arabidopsis Thaliana] (GB:Q9ZPI1); similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Ar"
MSGI1_17052	TC3679	7.2	12.5	53.5	9.4	0	-2.5	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_6303	TC368	54.2	48.4	360	114	0	-1.7	-2.7	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_10240	TC3683	10.4	19.2	32.5	19.8	0	0	-1.6	0	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to RHB1A (RING-H2 finger B1A), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G00335.2); similar to Os10g0142100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064147.1)"
MSGI1_117377	TC369	4.6	4.5	77.6	12.6	0	-2.6	-4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_6965	TC3697	39.1	27.3	30.6	66.3	0	1.1	0	-1.3	misc.short chain dehydrogenase/reductase (SDR)	short-chain dehydrogenase/reductase (SDR) family protein  similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT2G47130.1); similar to 3-beta hydroxysteroid dehydrogenase [Di (GB:AAV68714.1); contains InterPro
MSGI1_14865	TC3698	5.5	7	30.3	13.9	0	0	-2.5	0	protein.degradation	protease-associated (PA) domain-containing protein  similar to peptidase [Arabidopsis thaliana] (TAIR:AT1G01650.1); similar to growth-on protein GRO10 [Euphorbia esula] (GB:AAL14629.1); similar to putative growth-on protein GRO10 [Oryza sativa (japonica
MSGI1_79068	TC37	18.8	57.5	116.2	114.5	1.6	0	-2.6	-1	not assigned.unknown	not assigned.unknown
MSGI1_3052	TC370	67.1	64.4	523.6	129.4	0	-2	-3	-1	not assigned.unknown	not assigned.unknown
MSGI1_17103	TC3712	4.7	17.8	58.1	27.6	0	0	-3.6	0	hormone metabolism.ethylene.induced-regulated-responsive-activated	"ATMBF1C/MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator.  May serve as a brid"
MSGI1_17103	TC3712	4.7	17.8	58.1	27.6	0	0	-3.6	0	RNA.regulation of transcription.unclassified	"ATMBF1C/MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator.  May serve as a brid"
MSGI1_28250	TC3713	44.6	4.5	10.4	2.8	-3.3	0	2.1	0	lipid metabolism.Phospholipid synthesis	ATGPAT6/GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase Encodes a protein with glycerol-3-phosphate acyltransferase activity. Identical to Glycerol-3-phosphate acyltransferase 6 (EC 2.3.1.15)
MSGI1_11286	TC3715	68.8	84.9	41.4	86.3	0	1.1	0	0	transport.ABC transporters and multidrug resistance systems	ATPGP1 (ARABIDOPSIS THALIANA P GLYCOPROTEIN1); calmodulin binding Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR1.Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root.  E
MSGI1_11286	TC3715	68.8	84.9	41.4	86.3	0	1.1	0	0	hormone metabolism.auxin.signal transduction	ATPGP1 (ARABIDOPSIS THALIANA P GLYCOPROTEIN1); calmodulin binding Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR1.Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root.  E
MSGI1_23587	TC3725	63	117.1	135.5	51	0	-1.4	-1.1	1.2	not assigned.unknown	not assigned.unknown
MSGI1_27528	TC3728	3.2	28.4	5.5	2.6	3.1	0	0	3.4	not assigned.unknown	not assigned.unknown
MSGI1_26138	TC3741	4.5	61.5	39.7	213	3.8	2.4	-3.1	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_47826	TC3750	296.7	130.2	77.3	61.6	-1.2	0	1.9	1.1	not assigned.unknown	not assigned.unknown
MSGI1_6254	TC3751	22.1	28.3	0.1	0	0	0	7.8	5.8	protein.targeting.nucleus	"cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative  Identical to Importin-alpha re-exporter (Cellular apoptosis susceptibility protein homolog) (CAS) [Arabidopsis Thaliana] (GB:Q9ZPY7;GB:Q56WE2;GB:Q7GA14); similar"
MSGI1_6254	TC3751	22.1	28.3	0.1	0	0	0	7.8	5.8	stress.biotic	"cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative  Identical to Importin-alpha re-exporter (Cellular apoptosis susceptibility protein homolog) (CAS) [Arabidopsis Thaliana] (GB:Q9ZPY7;GB:Q56WE2;GB:Q7GA14); similar"
MSGI1_20074	TC3759	6	9.9	61.3	8.5	0	-2.9	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_22296	TC3774	156.4	43.6	108.8	33.4	-1.8	-1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_6176	TC3776	35.5	18.3	38.8	11.9	0	-1.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_25969	TC3778	11.4	16.9	60.8	38.6	0	0	-2.4	0	DNA.synthesis/chromatin structure	TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in prolifer
MSGI1_3281	TC3781	2.8	3.9	68.3	3.8	0	-4.2	-4.6	0	"metal handling.binding, chelation and storage"	"ATFP6 (FARNESYLATED PROTEIN 6); metal ion binding putative farnesylated protein (At4g38580) mRNA, complete similar to heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related [Arabidopsis thaliana] (TAIR:AT4G35060.1); similar to"
MSGI1_23149	TC3789	56.2	18.3	34.1	33.4	-1.6	0	0	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"50S ribosomal protein L28, chloroplast (CL28)  Identical to 50S ribosomal protein L28, chloroplast precursor (CL28) (RPL28) [Arabidopsis Thaliana] (GB:O22795;GB:Q8VY79); similar to 50S ribosomal protein L28, chloroplast precursor (CL28) (GB:P30956); cont"
MSGI1_34478	TC3790	46.2	15.2	49.2	58.2	-1.6	0	0	-1.9	protein.synthesis.mito/plastid ribosomal protein.plastid	"PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4); structural constituent of ribosome plastid-specific ribosomal protein 4 (PSRP4) mRNA, complete Identical to 30S ribosomal protein S31, chloroplast precursor (Plastid-specific 30S ribosomal protein 4) (PSRP-4)"
MSGI1_2978	TC3798	2.2	29.6	36.8	15.3	3.8	0	-4.1	0	protein.degradation.ubiquitin.E3.SCF.FBOX	F-box family protein  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G06240.1); similar to Cyclin-like F-box; F-box protein interaction domain [Medicago truncatula] (GB:ABE90596.1); similar to Cyclin-like F-box; F-box protein interaction
MSGI1_8491	TC3799	32.1	52.7	74.2	53.5	0	0	-1.2	0	redox.ascorbate and glutathione.glutathione	"ATGPX2 (GLUTATHIONE PEROXIDASE 2); glutathione peroxidase glutathione peroxidase GPx Identical to Probable glutathione peroxidase 2 (EC 1.11.1.9) (GPX2) [Arabidopsis Thaliana] (GB:O04922); similar to ATGPX7 (GLUTATHIONE PEROXIDASE 7), glutathione peroxid"
MSGI1_5499	TC380	93.1	36.2	77.3	59.9	-1.4	0	0	0	cell wall	"POM1 (POM-POM1); chitinase Encodes an endo chitinase-like protein AtCTL1.  Essential for tolerance to heat, salt and drought stresses.  Also involved in root hair development, cell expansion and response to cytokinin.  Allelic  to erh2. 11 alleles descri"
MSGI1_5499	TC380	93.1	36.2	77.3	59.9	-1.4	0	0	0	stress.biotic	"POM1 (POM-POM1); chitinase Encodes an endo chitinase-like protein AtCTL1.  Essential for tolerance to heat, salt and drought stresses.  Also involved in root hair development, cell expansion and response to cytokinin.  Allelic  to erh2. 11 alleles descri"
MSGI1_24260	TC3800	302.2	1.5	113.1	12.1	-7.7	-3.2	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_22091	TC3803	15.3	2.3	25	15.4	0	0	0	-2.7	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	basic helix-loop-helix (bHLH) family protein  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G46810.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABD32380.1); contains InterPro domain Helix-
MSGI1_35663	TC3809	9.2	22.8	32.5	17.4	0	0	-1.8	0	RNA.regulation of transcription.C3H zinc finger family	"zinc finger (CCCH-type) family protein  similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT4G29190.1); similar to Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE91976.1); contains InterPro domain Zinc finger, CCCH-type;"
MSGI1_2856	TC381	416	168.3	200.9	163.2	-1.3	0	1.1	0	stress.biotic	"POM1 (POM-POM1); chitinase Encodes an endo chitinase-like protein AtCTL1.  Essential for tolerance to heat, salt and drought stresses.  Also involved in root hair development, cell expansion and response to cytokinin.  Allelic  to erh2. 11 alleles descri"
MSGI1_2856	TC381	416	168.3	200.9	163.2	-1.3	0	1.1	0	cell wall	"POM1 (POM-POM1); chitinase Encodes an endo chitinase-like protein AtCTL1.  Essential for tolerance to heat, salt and drought stresses.  Also involved in root hair development, cell expansion and response to cytokinin.  Allelic  to erh2. 11 alleles descri"
MSGI1_41135	TC3810	26.6	59.5	86.5	10.2	1.2	-3.1	-1.7	2.5	not assigned.unknown	not assigned.unknown
MSGI1_24573	TC3811	21.2	22.1	0.2	0.3	0	0	6.7	6.2	cell wall	"disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT1G47890.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE79507.1); contains Inter"
MSGI1_24573	TC3811	21.2	22.1	0.2	0.3	0	0	6.7	6.2	stress.biotic	"disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT1G47890.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE79507.1); contains Inter"
MSGI1_6794	TC3812	7.4	7	43.5	9.4	0	-2.2	-2.6	0	development.unspecified	embryo-abundant protein-related  similar to embryo-abundant protein-related [Arabidopsis thaliana] (TAIR:AT5G10830.1); similar to embryo-abundant protein EMB [Pisum sativum] (GB:AAM19356.1); contains InterPro domain Methyltransferase type 11; (InterPro:IP
MSGI1_6794	TC3812	7.4	7	43.5	9.4	0	-2.2	-2.6	0	RNA.regulation of transcription.unclassified	embryo-abundant protein-related  similar to embryo-abundant protein-related [Arabidopsis thaliana] (TAIR:AT5G10830.1); similar to embryo-abundant protein EMB [Pisum sativum] (GB:AAM19356.1); contains InterPro domain Methyltransferase type 11; (InterPro:IP
MSGI1_19846	TC3813	3.5	4	21.6	23	0	0	-2.6	-2.5	protein.degradation	"peptidase M20/M25/M40 family protein  similar to DIP-1 [Citrullus lanatus] (GB:BAA95409.1); similar to acetylornithine deacetylase, putative [Brassica oleracea] (GB:ABD65618.1); similar to acetylornithine deacetylase, putative [Brassica oleracea] (GB:ABD"
MSGI1_34580	TC3814	8.3	4.1	48.3	23.7	0	0	-2.5	-2.5	not assigned.unknown	not assigned.unknown
MSGI1_16005	TC3828	10.1	29.7	28.4	8.4	0	0	0	1.8	protein.postranslational modification	AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1); kinase Arabidopsis protein kinase Identical to Serine/threonine-protein kinase OXI1 (EC 2.7.11.1) (Protein OXIDATIVE SIGNAL-INDUCIBLE1) (OXI1) [Arabidopsis Thaliana] (GB:Q9LSF1); similar to protein kinase family prot
MSGI1_3982	TC383	260.5	124.6	122.1	188.2	-1.1	0	1.1	0	TCA / org. transformation.other organic acid transformaitons.cyt MDH	"malate dehydrogenase, cytosolic, putative  Identical to Malate dehydrogenase, cytoplasmic 1 (EC 1.1.1.37) [Arabidopsis Thaliana] (GB:P93819); similar to malate dehydrogenase, cytosolic, putative [Arabidopsis thaliana] (TAIR:AT5G43330.1); similar to malat"
MSGI1_29189	TC3832	16.7	15.9	59.6	12	0	-2.3	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_17153	TC384	37.9	47.2	86.3	48.9	0	0	-1.2	0	protein.targeting.secretory pathway.vacuole	"vacuolar sorting receptor, putative  Identical to Vacuolar sorting receptor 6 precursor (AtVSR6) (Epidermal growth factor receptor-like protein 6) (AtELP6) (BP80-like protein d) (AtBP80d) (VSR6) [Arabidopsis Thaliana] (GB:Q9FYH7); similar to vacuolar sor"
MSGI1_34154	TC3841	4.5	9.9	36.9	22	0	0	-3	0	major CHO metabolism.degradation.starch.starch cleavage	AMY1 (ALPHA-AMYLASE-LIKE); alpha-amylase Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization.  Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AM
MSGI1_32954	TC3853	13.6	12.7	44.1	18.7	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_25968	TC3854	6.8	15.1	57.9	11.6	0	-2.3	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_54073	TC3859	12.1	4.7	0.2	0	0	0	5.9	0	not assigned.unknown	not assigned.unknown
MSGI1_1974	TC3862	26.5	3.8	8.9	3.8	-2.8	0	0	0	transport.ABC transporters and multidrug resistance systems	"ATPDR4/PDR4 (PLEIOTROPIC DRUG RESISTANCE 4); ATPase, coupled to transmembrane movement of substances  Identical to Probable pleiotropic drug resistance protein 4 (PDR4) [Arabidopsis Thaliana] (GB:O81016); similar to ATPDR12/PDR12 (PLEIOTROPIC DRUG RESIST"
MSGI1_18954	TC3871	9.6	14.6	47.9	12.4	0	-1.9	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_20410	TC3875	38.3	0.2	4.8	0.4	-7.6	0	3	0	cell wall.cell wall proteins.AGPs	"FLA9 (FLA9) fasciclin-like arabinogalactan-protein 9 (Fla9) Identical to Fasciclin-like arabinogalactan protein 9 precursor (FLA9) [Arabidopsis Thaliana] (GB:Q9ZWA8;GB:Q8H794); similar to fasciclin-like arabinogalactan-protein, putative [Arabidopsis thal"
MSGI1_11528	TC388	78	134.9	55.6	113.2	0	1	0	0	cell wall	"peroxidase, putative  Identical to Peroxidase 54 precursor (EC 1.11.1.7) (Atperox P54) (ATP29a) (PER54) [Arabidopsis Thaliana] (GB:Q9FG34;GB:P93729); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G06720.1); similar to Peroxidase A2 (GB:"
MSGI1_11528	TC388	78	134.9	55.6	113.2	0	1	0	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 54 precursor (EC 1.11.1.7) (Atperox P54) (ATP29a) (PER54) [Arabidopsis Thaliana] (GB:Q9FG34;GB:P93729); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G06720.1); similar to Peroxidase A2 (GB:"
MSGI1_15383	TC3881	1.6	0.3	32.6	0.5	0	-6	-4.3	0	protein.postranslational modification	"protein kinase family protein  similar to AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1), kinase [Arabidopsis thaliana] (TAIR:AT3G25250.1); similar to Os02g0603000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047362.1); similar to Os04g0488700 [Oryza sativa"
MSGI1_21321	TC3882	5.5	20	27.5	13.1	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_27999	TC3887	35.9	17.5	13.4	3.9	0	0	1.4	0	cell wall.degradation.pectate lyases and polygalacturonases	lyase  similar to lyase [Arabidopsis thaliana] (TAIR:AT4G38030.1); similar to lyase [Arabidopsis thaliana] (TAIR:AT4G37950.1); similar to lyase [Arabidopsis thaliana] (TAIR:AT1G09910.1); similar to Os08g0554100 [Oryza sativa (japonica cultivar-group)] (G
MSGI1_2448	TC3889	5.2	24.1	0.1	1.3	2.2	0	0	4.2	not assigned.unknown	not assigned.unknown
MSGI1_16142	TC389	53.7	10.5	11.9	10.6	-2.4	0	2.2	0	misc.peroxidases	ATPCA/ATPRX33/PRX33/PRXCA (PEROXIDASE 33); peroxidase Class III peroxidase Perx33. Expressed in roots. Located in the cell wall. Involved in cell elongation. Expression activated by light.  May play a role in generating H2O2 during defense response. Iden
MSGI1_16142	TC389	53.7	10.5	11.9	10.6	-2.4	0	2.2	0	cell wall	ATPCA/ATPRX33/PRX33/PRXCA (PEROXIDASE 33); peroxidase Class III peroxidase Perx33. Expressed in roots. Located in the cell wall. Involved in cell elongation. Expression activated by light.  May play a role in generating H2O2 during defense response. Iden
MSGI1_22457	TC3894	9	33.5	21.1	11.8	1.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_4182	TC39	6.7	8.4	254.3	23.7	0	-3.4	-5.2	0	amino acid metabolism.degradation.aspartate family.methionine.methionine gamma-lyase	"ATMGL; catalytic/ methionine gamma-lyase Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methio"
MSGI1_6828	TC3906	23.3	2.7	31.4	3.3	-3.1	-3.3	0	0	misc.acyl transferases	"acetylesterase, putative  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G26430.1); similar to lanatoside 15-O-acetylesterase [Di (GB:AAY41077.1); similar to lanatoside 15'-O-acetylesterase [Di (GB:CAA09694.1); cont"
MSGI1_6828	TC3906	23.3	2.7	31.4	3.3	-3.1	-3.3	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_6828	TC3906	23.3	2.7	31.4	3.3	-3.1	-3.3	0	0	cell wall	"acetylesterase, putative  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G26430.1); similar to lanatoside 15-O-acetylesterase [Di (GB:AAY41077.1); similar to lanatoside 15'-O-acetylesterase [Di (GB:CAA09694.1); cont"
MSGI1_2395	TC391	42.4	14.1	31.7	20.7	-1.6	0	0	0	cell wall	"peroxidase, putative  Identical to Peroxidase 54 precursor (EC 1.11.1.7) (Atperox P54) (ATP29a) (PER54) [Arabidopsis Thaliana] (GB:Q9FG34;GB:P93729); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G06720.1); similar to Peroxidase A2 (GB:"
MSGI1_2395	TC391	42.4	14.1	31.7	20.7	-1.6	0	0	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 54 precursor (EC 1.11.1.7) (Atperox P54) (ATP29a) (PER54) [Arabidopsis Thaliana] (GB:Q9FG34;GB:P93729); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G06720.1); similar to Peroxidase A2 (GB:"
MSGI1_6453	TC3913	18.1	13.8	41.5	9	0	-2.2	0	0	RNA.regulation of transcription.MADS box transcription factor family	AGL8 (AGAMOUS-LIKE 8); transcription factor MADS box gene negatively regulated  by APETALA1 Identical to Agamous-like MADS-box protein AGL8 (Floral homeotic protein AGL8) (Transcription factor FRUITFULL) (AGL8) [Arabidopsis Thaliana] (GB:Q38876); similar
MSGI1_6453	TC3913	18.1	13.8	41.5	9	0	-2.2	0	0	development.unspecified	AGL8 (AGAMOUS-LIKE 8); transcription factor MADS box gene negatively regulated  by APETALA1 Identical to Agamous-like MADS-box protein AGL8 (Floral homeotic protein AGL8) (Transcription factor FRUITFULL) (AGL8) [Arabidopsis Thaliana] (GB:Q38876); similar
MSGI1_3364	TC392	168.4	40.6	69.3	33.7	-2.1	0	1.3	0	cell wall	"peroxidase, putative  Identical to Peroxidase 53 precursor (EC 1.11.1.7) (Atperox P53) (ATPA2) (PER53) [Arabidopsis Thaliana] (GB:Q42578); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G06730.1); similar to Peroxidase A2 (GB:P80679); co"
MSGI1_3364	TC392	168.4	40.6	69.3	33.7	-2.1	0	1.3	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 53 precursor (EC 1.11.1.7) (Atperox P53) (ATPA2) (PER53) [Arabidopsis Thaliana] (GB:Q42578); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G06730.1); similar to Peroxidase A2 (GB:P80679); co"
MSGI1_20601	TC3924	176.9	92	60.6	55.6	0	0	1.5	0	mitochondrial electron transport / ATP synthesis.cytochrome c oxidase	"cytochrome c oxidase-related  similar to Os03g0772800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051412.1); contains InterPro domain Cytochrome c oxidase, subunit VIa; (InterPro:IPR001349)"
MSGI1_16100	TC3926	6.8	22.3	26.5	36.4	0	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_10709	TC3929	103.7	43.6	40.5	71.9	-1.3	0	1.4	0	redox.dismutases and catalases	"CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); copper, zinc superoxide dismutase Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Identical to Superoxide dismutase [Cu-Zn], chloroplast precursor (EC 1.15.1."
MSGI1_1740	TC393	13	57.3	34.9	41.6	2.1	0	0	0	N-metabolism.nitrate metabolism.NR	NIA2 (NITRATE REDUCTASE 2) Identified as a mutant resistant to chlorate. Encodes nitrate reductase structural gene. Involved in nitrate assimilation. Has nitrate reductase activity. Up-regulated by the fungus P. indica. Binds transcription factor At2g359
MSGI1_1740	TC393	13	57.3	34.9	41.6	2.1	0	0	0	cell wall	NIA2 (NITRATE REDUCTASE 2) Identified as a mutant resistant to chlorate. Encodes nitrate reductase structural gene. Involved in nitrate assimilation. Has nitrate reductase activity. Up-regulated by the fungus P. indica. Binds transcription factor At2g359
MSGI1_113904	TC394	11.2	42.8	8.3	18	1.9	0	0	0	N-metabolism.nitrate metabolism.NR	NIA2 (NITRATE REDUCTASE 2) Identified as a mutant resistant to chlorate. Encodes nitrate reductase structural gene. Involved in nitrate assimilation. Has nitrate reductase activity. Up-regulated by the fungus P. indica. Binds transcription factor At2g359
MSGI1_17210	TC3943	78.7	4.3	440.4	6.2	-4.2	-6.2	-2.5	0	hormone metabolism.gibberelin.induced-regulated-responsive-activated	"gibberellin-regulated family protein  similar to gibberellin-regulated family protein [Arabidopsis thaliana] (TAIR:AT2G39540.1); similar to snakin-1 [Solanum tuberosum] (GB:CAC44032.1); contains InterPro domain Growth factor, cystine knot; (InterPro:IPR0"
MSGI1_10785	TC395	13.8	66.9	28.4	45.6	2.3	0	0	0	N-metabolism.nitrate metabolism.NR	"NIA1 (NITRATE REDUCTASE 1) Encodes the cytosolic minor isoform of nitrate reductase (NR). Involved in the first step of nitrate assimilation, it contributes about 15% of the nitrate reductase activity in shoots. Similar to molybdopterin oxidoreductases a"
MSGI1_8490	TC3977	30.6	7.9	39.6	11.9	-2	-1.7	0	0	protein.postranslational modification	"CIPK10 (CBL-INTERACTING PROTEIN KINASE 10); kinase Encodes a CBL-interacting protein kinase with similarity to SOS protein kinase. similar to CIPK2 (CBL-INTERACTING PROTEIN KINASE 2), kinase [Arabidopsis thaliana] (TAIR:AT5G07070.1); similar to CBL-inter"
MSGI1_14298	TC3982	25.9	33	24.5	63.3	0	1.4	0	0	cell wall	"CYP712A2 (cytochrome P450, family 712, subfamily A, polypeptide 2); oxygen binding member of CYP712A similar to CYP712A1 (cytochrome P450, family 712, subfamily A, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G42250.1); similar to E-cla"
MSGI1_14298	TC3982	25.9	33	24.5	63.3	0	1.4	0	0	misc.cytochrome P450	"CYP712A2 (cytochrome P450, family 712, subfamily A, polypeptide 2); oxygen binding member of CYP712A similar to CYP712A1 (cytochrome P450, family 712, subfamily A, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G42250.1); similar to E-cla"
MSGI1_20650	TC3992	2.4	10.4	144	0.5	0	-8.2	-5.9	0	protein.degradation.ubiquitin.E3.RING	armadillo/beta-catenin repeat family protein / U-box domain-containing protein  similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G10560.1); similar to Os08g0415600 [Oryza sativa (jap
MSGI1_20035	TC4002	41.9	24.4	16.6	23.6	0	0	1.3	0	protein.synthesis.misc ribososomal protein	"60s acidic ribosomal protein P1, putative  similar to 60S acidic ribosomal protein P1 (RPP1B) [Arabidopsis thaliana] (TAIR:AT4G00810.2); similar to ribosomal protein P1 [Triticum aestivum] (GB:AAW50990.1); contains InterPro domain Ribosomal protein 60S;"
MSGI1_14813	TC4007	31.7	14	9	9.5	0	0	1.8	0	transport.misc	MATE efflux family protein  similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT4G00350.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE85324.1); similar to putative anthocyanin permease [Lycopersico
MSGI1_22678	TC4011	59.7	17.2	45	21.8	-1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_9197	TC4017	16.6	23.5	0.1	0	0	0	7.4	5.6	not assigned.unknown	not assigned.unknown
MSGI1_9908	TC4019	13.4	27.8	35.8	5.8	0	-2.6	0	2.3	not assigned.unknown	not assigned.unknown
MSGI1_10897	TC4024	2.8	3.1	20.7	25.5	0	0	-2.9	-3	DNA.synthesis/chromatin structure	TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in prolifer
MSGI1_16062	TC4040	6.8	3.5	67.6	2.6	0	-4.7	-3.3	0	minor CHO metabolism.raffinose family.raffinose synthases.known	"SIP1 (SEED IMBIBITION 1-LIKE); galactinol-sucrose galactosyltransferase/ hydrolase, hydrolyzing O-glycosyl compounds Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount o"
MSGI1_40425	TC4041	22	14.7	184.9	12.2	0	-3.9	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_22295	TC4048	24.6	18.4	5.1	3.5	0	0	2.3	2.4	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G11250.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thal"
MSGI1_22295	TC4048	24.6	18.4	5.1	3.5	0	0	2.3	2.4	RNA.regulation of transcription.WRKY domain transcription factor family	TTR1 (WRKY domain family protein 16); transcription factor Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. Identical to Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16)
MSGI1_57678	TC4052	25.2	7	20.9	16.6	-1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_34578	TC4053	37.7	11.6	3.5	3.2	-1.7	0	3.4	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"RPL4 (ribosomal protein L4); structural constituent of ribosome encodes a plastid ribosomal protein L4 Identical to 50S ribosomal protein L4, chloroplast precursor (CL4) (R-protein L4) (RPL4) [Arabidopsis Thaliana] (GB:O50061;GB:Q8LF27;GB:Q8VZS1;GB:Q9LNV"
MSGI1_9649	TC4059	26	6.7	32.5	13.4	-2	0	0	0	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17380.1); similar to PnFL-2 [Ipomoea nil] (GB:AAG49896.1); similar to Os07g0615200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060268.1); similar to Os03g0402800 [Oryza sativa (japonica cu
MSGI1_31230	TC406	13.4	14.5	0.1	0.2	0	0	7.1	6.2	not assigned.unknown	not assigned.unknown
MSGI1_24090	TC4067	84.4	29.9	27.2	38.4	-1.5	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_24661	TC407	20.6	19.6	0.7	0.9	0	0	4.9	4.4	not assigned.unknown	not assigned.unknown
MSGI1_6683	TC4078	21	3.9	5.1	6.4	-2.4	0	0	0	cell wall.pectin*esterases.misc	"pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT3G43270.1); similar to Pectinesterase PPE8B precursor (Pectin methylesterase) (PE) (GB:Q43062); contains InterPro domain Virulence factor, pectin lyase"
MSGI1_802	TC408	51.8	47.8	27.8	59.4	0	1.1	0	0	protein.folding	"chaperonin, putative  similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G11830.1); similar to chaperonin containing TCP1, subunit 2 (beta) [Gallus gallus] (GB:NP_001012551.1); similar to Protein kinase; GroEL-like chaperone, ATPase [Medicag"
MSGI1_25891	TC4083	22.5	59.2	95.3	30.1	1.4	-1.7	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_9757	TC4099	151.4	1	39.1	4.3	-7.2	-3.2	2	0	cell wall	leucine-rich repeat family protein  similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT5G12940.1); similar to polygalacturonase inhibitor-like protein [Cicer arietinum] (GB:CAD56505.1); contains InterPro domain Rudiment single h
MSGI1_52522	TC41	0	0	17.7	41.7	0	1.2	-5.1	-6.4	cell wall	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14067.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_52522	TC41	0	0	17.7	41.7	0	1.2	-5.1	-6.4	protein.degradation.subtilases	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14067.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_51247	TC410	47.1	36.9	9.4	20.8	0	0	2.3	0	protein.folding	"chaperonin, putative  similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G11830.1); similar to chaperonin containing TCP1, subunit 2 (beta) [Gallus gallus] (GB:NP_001012551.1); similar to Protein kinase; GroEL-like chaperone, ATPase [Medicag"
MSGI1_9828	TC4108	26.3	1.1	3.3	0.8	-4.6	0	3	0	not assigned.unknown	not assigned.unknown
MSGI1_18557	TC4109	3.4	0.4	104	0.3	0	-8.4	-4.9	0	not assigned.unknown	not assigned.unknown
MSGI1_10896	TC4121	21.7	1.6	19	32.2	-3.8	0	0	-4.3	misc.cytochrome P450	"CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15); oxygen binding putative cytochrome P450 similar to CYP72A14 (cytochrome P450, family 72, subfamily A, polypeptide 14), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14680.1); similar t"
MSGI1_8695	TC4133	118.9	44.4	71.1	161.9	-1.4	1.2	0	-1.9	cell wall.modification	"ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thali"
MSGI1_9717	TC4138	6.4	7.3	16.9	2.3	0	-2.9	0	0	cell wall.degradation.pectate lyases and polygalacturonases	"endo-polygalacturonase, putative  similar to ADPG1 (endo-polygalacturonase 1), polygalacturonase [Arabidopsis thaliana] (TAIR:AT3G57510.1); similar to endopolygalacturonase [Brassica napus] (GB:CAC05657.1); contains InterPro domain Virulence factor, pect"
MSGI1_7679	TC4143	21.3	14.2	0.1	0	0	0	7.7	4.8	not assigned.unknown	not assigned.unknown
MSGI1_27210	TC4153	130.4	62.1	23	46.1	-1.1	0	2.5	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S30 (RPS30C)  Identical to 40S ribosomal protein S30 (RPS30C) [Arabidopsis Thaliana] (GB:P49689;GB:O82203;GB:Q9M0E4); similar to 40S ribosomal protein S30 (RPS30A) [Arabidopsis thaliana] (TAIR:AT2G19750.1); similar to 40S ribosomal p
MSGI1_9048	TC4166	14.9	5.9	0.1	0	0	0	7.2	0	stress.biotic	EDS1 (ENHANCED DISEASE SUSCEPTIBILITY 1); signal transducer/ triacylglycerol lipase Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases. similar to lipase class 3 family protein / disease resistance
MSGI1_10843	TC4177	8.7	23.4	0	0	0	0	0	5.5	not assigned.unknown	not assigned.unknown
MSGI1_57949	TC418	7.5	13.9	1.4	1.6	0	0	0	3.1	not assigned.unknown	not assigned.unknown
MSGI1_18616	TC4189	28.3	11.6	4.5	6.3	0	0	2.7	0	nucleotide metabolism.deoxynucleotide metabolism.ribonucleoside-diphosphate reductase	TSO2 (TSO2); ribonucleoside-diphosphate reductase Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in
MSGI1_25145	TC4193	7.7	30.6	12.8	27.3	2	0	0	0	hormone metabolism.cytokinin.synthesis-degradation	"CKX7 (CYTOKININ OXIDASE 7); oxidoreductase This gene used to be called AtCKX5. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins. Identical to Cytokinin dehydrogenase 7 (EC 1."
MSGI1_11590	TC4197	19.1	21.5	1.1	0.6	0	0	4.1	5.2	not assigned.unknown	not assigned.unknown
MSGI1_20214	TC42	55.7	77.5	26.3	27.6	0	0	1.1	1.5	protein.degradation.subtilases	"subtilase family protein  similar to AIR3 (Auxin-Induced in Root cultures 3), subtilase [Arabidopsis thaliana] (TAIR:AT2G04160.1); similar to subtilisin-like protease [Triticum aestivum] (GB:CAJ75644.1); similar to subtilisin-like protease [Glycine max]"
MSGI1_20214	TC42	55.7	77.5	26.3	27.6	0	0	1.1	1.5	cell wall	"subtilase family protein  similar to AIR3 (Auxin-Induced in Root cultures 3), subtilase [Arabidopsis thaliana] (TAIR:AT2G04160.1); similar to subtilisin-like protease [Triticum aestivum] (GB:CAJ75644.1); similar to subtilisin-like protease [Glycine max]"
MSGI1_12477	TC420	42.4	42.4	7.7	8	0	0	2.5	2.4	not assigned.unknown	not assigned.unknown
MSGI1_31348	TC4209	32	99.7	25.9	63.4	1.6	1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_31103	TC4221	20.6	73.8	44.7	14	1.8	-1.7	0	2.4	not assigned.unknown	not assigned.unknown
MSGI1_24035	TC4223	54.2	26.3	20.7	12.3	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_50560	TC4229	30.8	17.4	8.9	13.8	0	0	1.8	0	protein.synthesis.misc ribososomal protein	60S acidic ribosomal protein P2 (RPP2B)  Identical to 60S acidic ribosomal protein P2-2 (RPP2B) [Arabidopsis Thaliana] (GB:Q9SLF7;GB:Q8LB03); similar to 60S acidic ribosomal protein P2 (RPP2A) [Arabidopsis thaliana] (TAIR:AT2G27720.1); similar to 60s acid
MSGI1_76929	TC4232	2.2	0.7	14.1	31.5	0	0	0	-5.5	amino acid metabolism.degradation.glutamate family.proline	"ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5, PROLINE OXIDASE); proline dehydrogenase Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress.  The pro"
MSGI1_5252	TC4233	28.2	40.5	10.6	14.8	0	0	0	1.5	not assigned.unknown	not assigned.unknown
MSGI1_28548	TC4234	9.1	0.3	14.9	0.2	0	-6.2	0	0	fermentation.aldehyde dehydrogenase	ALDH3F1 (ALDEHYDE DEHYDROGENASE 3F1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 3F1 (EC 1.2.1.3) (ALDH3F1) [Arabidopsis Thaliana] (GB:Q70E96;GB:O65516); similar to ALDH3H
MSGI1_62105	TC4235	7.1	0.1	16.4	0	0	-5	0	0	fermentation.aldehyde dehydrogenase	ALDH3F1 (ALDEHYDE DEHYDROGENASE 3F1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 3F1 (EC 1.2.1.3) (ALDH3F1) [Arabidopsis Thaliana] (GB:Q70E96;GB:O65516); similar to ALDH3H
MSGI1_21536	TC4243	32.8	14.2	6.5	10.2	0	0	2.3	0	RNA.regulation of transcription.bZIP transcription factor family	"bZIP transcription factor family protein  similar to bZIP transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G06850.1); similar to cAMP response element binding (CREB) protein [Medicago truncatula] (GB:ABE94130.1); contains InterPro domain Eu"
MSGI1_33481	TC4248	7.6	5.3	39	12.4	0	-1.7	-2.4	0	DNA.unspecified	"SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  similar to phosphatidylinositol transporter [Arabidopsis thaliana] (TAIR:AT2G21540.2); similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, puta"
MSGI1_33481	TC4248	7.6	5.3	39	12.4	0	-1.7	-2.4	0	transport.misc	"SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  similar to phosphatidylinositol transporter [Arabidopsis thaliana] (TAIR:AT2G21540.2); similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, puta"
MSGI1_1351	TC425	355.3	265.8	152.8	296.7	0	1	1.2	0	glycolysis.phosphoglycerate kinases	"PGK (PHOSPHOGLYCERATE KINASE) Encodes cytosolic phosphoglycerate kinase (PGK). similar to PGK1 (PHOSPHOGLYCERATE KINASE 1), phosphoglycerate kinase [Arabidopsis thaliana] (TAIR:AT3G12780.1); similar to phosphoglycerate kinase, putative [Arabidopsis thali"
MSGI1_3220	TC426	152.6	53.8	35.3	78.3	-1.5	1.1	2.1	0	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit JP650 precursor (Aromatic-rich glycoprotein JP650) (JP650) [Arabidopsis Thaliana] (GB:P92990;GB:O64599;GB:Q8H7B8;GB:Q93ZQ4); simil"
MSGI1_31102	TC4262	5.9	11.2	28.6	10.3	0	0	-2.3	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	basic helix-loop-helix (bHLH) family protein  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G42280.1); similar to Os08g0506700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062190.1); similar to transcription
MSGI1_9117	TC427	127.1	46.5	33.7	73.6	-1.5	1.1	1.9	0	cell wall.degradation.pectate lyases and polygalacturonases	JP630; polygalacturonase Encodes aromatic rich glycoprotein JP630. Identical to Probable polygalacturonase non-catalytic subunit JP630 precursor (Aromatic-rich glycoprotein JP630) (JP630) [Arabidopsis Thaliana] (GB:P92982;GB:Q9S9K5); similar to BURP doma
MSGI1_74004	TC4272	2.3	7.9	29.9	5.6	0	-2.4	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_43597	TC4273	52	37.1	29.2	10	0	0	0	1.9	not assigned.unknown	not assigned.unknown
MSGI1_28092	TC428	114.4	38.8	24.1	36.5	-1.6	0	2.2	0	cell wall.degradation.pectate lyases and polygalacturonases	"BURP domain-containing protein / polygalacturonase, putative  Identical to Probable polygalacturonase non-catalytic subunit At1g60390 precursor (Aromatic-rich glycoprotein At1g60390) [Arabidopsis Thaliana] (GB:O80760); similar to JP630, polygalacturonase"
MSGI1_78529	TC429	113.3	43.4	58.1	146.4	-1.4	1.3	1	-1.8	cell wall.degradation.pectate lyases and polygalacturonases	JP630; polygalacturonase Encodes aromatic rich glycoprotein JP630. Identical to Probable polygalacturonase non-catalytic subunit JP630 precursor (Aromatic-rich glycoprotein JP630) (JP630) [Arabidopsis Thaliana] (GB:P92982;GB:Q9S9K5); similar to BURP doma
MSGI1_51750	TC4296	7.2	12.3	44.5	5.7	0	-3	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_37092	TC4297	15.3	1.8	13.6	23.2	-3.1	0	0	-3.7	protein.degradation.subtilases	subtilase family protein  similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); simila
MSGI1_16141	TC431	66.6	66.8	31.6	85.4	0	1.4	1.1	0	stress.biotic	"ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19); ATPase, coupled to transmembrane movement of substances / auxin efflux transporter Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates"
MSGI1_16141	TC431	66.6	66.8	31.6	85.4	0	1.4	1.1	0	transport.ABC transporters and multidrug resistance systems	"ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19); ATPase, coupled to transmembrane movement of substances / auxin efflux transporter Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates"
MSGI1_24258	TC4318	24.3	6.4	43.5	12.6	-1.9	-1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_15186	TC4323	13.8	0.1	4.5	1.2	-7.1	0	0	0	misc.glutathione S transferases	ATGSTU8 (Arabidopsis thaliana Glutathione S-transferase (class tau) 8); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU7 (GLUTATHIONE S-TRA
MSGI1_24572	TC4327	28.3	4.5	10	6.9	-2.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_251	TC434	37.3	136.4	63.7	99.7	1.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_16253	TC4345	157.9	53.9	60.5	66	-1.6	0	1.4	0	protein.synthesis.misc ribososomal protein	"SSR16 (ribosomal protein S16); structural constituent of ribosome Encodes ribosomal protein S16, has embryo-defective lethal mutant phenotype similar to ribosomal protein S16 family protein [Arabidopsis thaliana] (TAIR:AT5G56940.1); similar to Ribosomal"
MSGI1_12318	TC4346	16.3	19.5	5.4	4	0	0	0	2.3	RNA.regulation of transcription.C2H2 zinc finger family	zinc finger (C2H2 type) family protein  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G50080.1); similar to Os11g0498400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067938.1); similar to zinc finger protein 511 [Danio rerio] (GB:NP_00
MSGI1_14168	TC4359	47	133.3	101.4	40.5	1.5	-1.3	-1.1	1.7	RNA.regulation of transcription.unclassified	zinc finger (AN1-like) family protein  Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 3 (AtSAP3) (SAP3) [Arabidopsis Thaliana] (GB:Q9ZNU9); similar to zinc finger (AN1-like) family protein [Arabidopsis thaliana] (TAIR:AT
MSGI1_57677	TC4376	9	31.9	33.6	3.6	1.8	-3.2	-1.9	3.1	not assigned.unknown	not assigned.unknown
MSGI1_21590	TC4377	22.8	6.5	5.3	13.2	0	0	2.1	0	hormone metabolism.auxin.induced-regulated-responsive-activated	"aldo/keto reductase family protein  similar to ATB2, oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G60710.1); similar to aldo/keto reductase AKR [Manihot esculenta] (GB:AAX84672.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395)"
MSGI1_30352	TC4386	5.5	8.7	37	9.7	0	-1.9	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_21055	TC4389	15.7	14.9	0.1	0	0	0	7.3	4.9	not assigned.unknown	not assigned.unknown
MSGI1_4597	TC4399	5.3	5.7	23.7	12.3	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_19466	TC4401	4.5	6.2	83.6	8.2	0	-3.3	-4.2	0	misc.glutathione S transferases	ATGSTU7 (GLUTATHIONE S-TRANSFERASE 25); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by
MSGI1_29641	TC4403	77.3	55.6	49.7	25.2	0	0	0	1.1	not assigned.unknown	not assigned.unknown
MSGI1_43186	TC4419	20.3	9.3	3.9	5.6	0	0	2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_9716	TC442	59.6	57	153.7	101.9	0	0	-1.4	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	"PSBR (photosystem II subunit R) Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gen"
MSGI1_4906	TC4425	24	22.5	40.7	108.4	0	1.4	0	-2.3	PS.calvin cyle.aldolase	"fructose-bisphosphate aldolase, putative  similar to fructose-bisphosphate aldolase, cytoplasmic [Arabidopsis thaliana] (TAIR:AT4G26520.1); similar to fructose-bisphosphate aldolase [Pandanus amaryllifolius] (GB:AAR88661.1); contains InterPro domain Fruc"
MSGI1_4906	TC4425	24	22.5	40.7	108.4	0	1.4	0	-2.3	glycolysis.aldolase	"fructose-bisphosphate aldolase, putative  similar to fructose-bisphosphate aldolase, cytoplasmic [Arabidopsis thaliana] (TAIR:AT4G26520.1); similar to fructose-bisphosphate aldolase [Pandanus amaryllifolius] (GB:AAR88661.1); contains InterPro domain Fruc"
MSGI1_6206	TC444	136.4	87	306.7	359.1	0	0	-1.2	-2	PS.lightreaction.photosystem I.LHC-I	LHCA1; chlorophyll binding Encodes a component of the light harvesting complex associated with photosystem I. similar to LHCB4.2 (LIGHT HARVESTING COMPLEX PSII) [Arabidopsis thaliana] (TAIR:AT3G08940.2); similar to photosystem I light-harvesting chloroph
MSGI1_30351	TC4440	60.4	44.5	66.2	89.5	0	0	0	-1	RNA.transcription	"DNA-directed RNA polymerases I, II, and III 7 kDa subunit, putative  similar to DNA-directed RNA polymerases I, II, and III 7 kDa subunit, putative [Arabidopsis thaliana] (TAIR:AT1G53690.1); similar to polymerase (RNA) II (DNA directed) polypeptide K iso"
MSGI1_21396	TC4446	10.3	11.9	22.5	2.5	0	-3.2	0	0	protein.degradation.aspartate protease	"aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G45120.1); similar to Peptidase aspartic, active site [Medicago truncatula] (GB:ABE80893.1); contains InterPro domain Peptidase A1, pepsin; (Int"
MSGI1_5859	TC4459	1.4	75.1	0.5	7.6	5.7	0	0	3.3	not assigned.unknown	not assigned.unknown
MSGI1_6758	TC446	163	95.9	60	133.9	0	1.2	1.4	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S4 (RPS4B)  Identical to 40S ribosomal protein S4-1 (RPS4A) [Arabidopsis Thaliana] (GB:Q93VH9;GB:Q7XJS7); Identical to 40S ribosomal protein S4-3 (RPS4D) [Arabidopsis Thaliana] (GB:Q8VYK6;GB:Q944M1;GB:Q9FGI0); Identical to 40S ribos
MSGI1_61453	TC4460	127.1	36.1	642.3	231.3	-1.8	-1.5	-2.3	-2.7	not assigned.unknown	not assigned.unknown
MSGI1_28249	TC447	149.6	81	61.2	123.7	0	1	1.3	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S4 (RPS4D)  Identical to 40S ribosomal protein S4-1 (RPS4A) [Arabidopsis Thaliana] (GB:Q93VH9;GB:Q7XJS7); Identical to 40S ribosomal protein S4-3 (RPS4D) [Arabidopsis Thaliana] (GB:Q8VYK6;GB:Q944M1;GB:Q9FGI0); Identical to 40S ribos
MSGI1_89757	TC4477	97.1	3.3	13.1	1.9	-4.9	0	2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_6601	TC448	413.7	233.5	136.5	294.9	0	1.1	1.6	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S4 (RPS4B)  Identical to 40S ribosomal protein S4-1 (RPS4A) [Arabidopsis Thaliana] (GB:Q93VH9;GB:Q7XJS7); Identical to 40S ribosomal protein S4-3 (RPS4D) [Arabidopsis Thaliana] (GB:Q8VYK6;GB:Q944M1;GB:Q9FGI0); Identical to 40S ribos
MSGI1_33995	TC4489	20.5	90.9	56.3	67.1	2.1	0	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_54660	TC449	114.8	62.6	46	78.3	0	0	1.3	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S4 (RPS4D)  Identical to 40S ribosomal protein S4-1 (RPS4A) [Arabidopsis Thaliana] (GB:Q93VH9;GB:Q7XJS7); Identical to 40S ribosomal protein S4-3 (RPS4D) [Arabidopsis Thaliana] (GB:Q8VYK6;GB:Q944M1;GB:Q9FGI0); Identical to 40S ribos
MSGI1_28824	TC450	57.2	30.6	17.9	18.3	0	0	1.7	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S4 (RPS4D)  Identical to 40S ribosomal protein S4-1 (RPS4A) [Arabidopsis Thaliana] (GB:Q93VH9;GB:Q7XJS7); Identical to 40S ribosomal protein S4-3 (RPS4D) [Arabidopsis Thaliana] (GB:Q8VYK6;GB:Q944M1;GB:Q9FGI0); Identical to 40S ribos
MSGI1_24817	TC4502	26.4	9.3	5.6	9.2	0	0	2.2	0	cell wall.degradation.pectate lyases and polygalacturonases	"pectate lyase family protein  similar to PMR6 (POWDERY MILDEW RESISTANT 6), lyase/ pectate lyase [Arabidopsis thaliana] (TAIR:AT3G54920.1); similar to pectate lyase-like protein [Brassica napus] (GB:AAQ87025.1); contains InterPro domain Virulence factor,"
MSGI1_20923	TC4508	12.8	42.6	56.6	36.5	1.7	0	-2.1	0	amino acid metabolism.synthesis.aromatic aa.phenylalanine.arogenate dehydratase / prephenate dehydratase	"prephenate dehydratase family protein  similar to PD1 (PREPHENATE DEHYDRATASE 1), prephenate dehydratase [Arabidopsis thaliana] (TAIR:AT2G27820.1); similar to prephenate dehydratase [Ipomoea trifida] (GB:AAS79603.1); contains InterPro domain Prephenate d"
MSGI1_45263	TC4516	5.2	10.9	21.4	4	0	-2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_44010	TC4537	2.2	32.3	263	20.7	3.9	-3.7	-6.9	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP2 (ARABIDOPSIS THALIANA SEED IMBIBITION 2); hydrolase, hydrolyzing O-glycosyl compounds  similar to ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G55740.1); similar to DI"
MSGI1_25811	TC4549	10.9	16.3	65.8	42.6	0	0	-2.6	-1.4	transport.metabolite transporters at the mitochondrial membrane	mitochondrial substrate carrier family protein  similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT4G24570.1); similar to putative mitochondrial dicarboxylate carrier protein [Trifolium pratense] (GB:BAE71294.1); cont
MSGI1_3562	TC4552	50.8	59.3	0.1	0	0	0	9	6.9	not assigned.unknown	not assigned.unknown
MSGI1_129	TC456	49.2	21.2	28.2	19	-1.2	0	0	0	cell.organisation	FRA1 (FRAGILE FIBER 1); microtubule motor encodes a kinesin-like protein with an N-terminal microtubule binding motor domain. Protein is localized to the periphery of the cytoplasm and mutants in the gene exhibit altered orientation of cellulose microfib
MSGI1_6779	TC4560	4.2	12.7	4.8	20.3	0	2.1	0	0	RNA.regulation of transcription.C2H2 zinc finger family	"zinc finger protein-related  similar to ZFP6 (ZINC FINGER PROTEIN 6), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G67030.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BA"
MSGI1_26360	TC4576	59.1	27.7	30.7	20.6	-1.1	0	0	0	mitochondrial electron transport / ATP synthesis.cytochrome c oxidase	"cytochrome c oxidase subunit 6b, putative  similar to cytochrome c oxidase subunit 6b, putative [Arabidopsis thaliana] (TAIR:AT4G28060.1); similar to putative cytochrome c oxidase subunit [Triticum aestivum] (GB:AAM92706.1); similar to Os04g0498200 [Oryz"
MSGI1_29471	TC4579	36	12.1	25.9	11.1	-1.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_24816	TC4583	64.7	32.1	27.5	47.1	-1	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_19796	TC4587	12.5	17.1	2.4	2.5	0	0	0	2.8	stress.biotic	"disease resistance protein (NBS-LRR class), putative  Identical to Putative disease resistance protein At1g61300 [Arabidopsis Thaliana] (GB:O64790); similar to ATP binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G61180.2); similar to disease re"
MSGI1_41132	TC4607	0.6	4	16.4	13.1	0	0	-4.8	0	not assigned.unknown	not assigned.unknown
MSGI1_18217	TC463	20.6	38.9	34.7	87.4	0	1.3	0	-1.2	cell wall.cell wall proteins.AGPs	FLA11 (fasciclin-like arabinogalactan-protein 11)  Identical to Fasciclin-like arabinogalactan protein 11 precursor (FLA11) [Arabidopsis Thaliana] (GB:Q8LEJ6;GB:Q9LYW8); similar to FLA12 (fasciclin-like arabinogalactan-protein 12) [Arabidopsis thaliana] (
MSGI1_4462	TC464	88.2	217.3	98.6	221.1	1.3	1.2	0	0	cell wall.cell wall proteins.AGPs	FLA12 (fasciclin-like arabinogalactan-protein 12)  Identical to Fasciclin-like arabinogalactan protein 12 precursor (FLA12) [Arabidopsis Thaliana] (GB:Q8LEE9;GB:Q94EG7;GB:Q9FKJ8); similar to FLA11 (fasciclin-like arabinogalactan-protein 11) [Arabidopsis t
MSGI1_59810	TC465	9.4	23.2	236.2	280	0	0	-4.7	-3.6	not assigned.unknown	not assigned.unknown
MSGI1_18155	TC4650	41.5	11.3	15.8	17.9	-1.9	0	1.4	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"50S ribosomal protein L28, chloroplast (CL28)  Identical to 50S ribosomal protein L28, chloroplast precursor (CL28) (RPL28) [Arabidopsis Thaliana] (GB:O22795;GB:Q8VY79); similar to 50S ribosomal protein L28, chloroplast precursor (CL28) (GB:P30956); cont"
MSGI1_74923	TC466	88.1	226.2	138	241.1	1.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_13497	TC4675	8.2	6.6	32.1	9.8	0	-1.7	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_26134	TC468	0.4	0.4	16	22.7	0	0	-5.3	-5.8	stress.abiotic.light	DDB1B (DAMAGED DNA BINDING PROTEIN 1 B) One of two closely related genes similar to a damaged DNA binding protein originally described in mammals. May form a complex with DET1 to regulate photomorphogenesis. Loss of function mutations are lethal. Identic
MSGI1_6651	TC4683	2.3	10.8	29.2	8.8	0	0	-3.7	0	amino acid metabolism.synthesis.glutamate family.arginine.aspartate racemase	aspartate-glutamate racemase family  similar to Asp/Glu racemase [Medicago truncatula] (GB:ABD28387.1); contains InterPro domain Asp/Glu racemase; (InterPro:IPR001920); contains InterPro domain Aspartate racemase; (InterPro:IPR004380)
MSGI1_16905	TC4690	36.7	12.6	10.6	13	-1.5	0	1.8	0	cell. vesicle transport	oxysterol binding  similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT4G08180.1); similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT2G31020.1); similar to oxysterol-binding family protein [Arabidopsis thali
MSGI1_9066	TC4695	22.6	14.6	4.9	8.7	0	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_22294	TC4719	3.6	5.5	19.8	17.9	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_26133	TC4721	7	10.7	23.3	5.6	0	-2.1	0	0	hormone metabolism.abscisic acid.synthesis-degradation.degradation. 8-hydroxylase	"CYP707A1 (cytochrome P450, family 707, subfamily A, polypeptide 1); oxygen binding Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. CYP707A1 appears to play an important role in determinin"
MSGI1_5737	TC4729	14.5	14.6	91.3	16	0	-2.5	-2.7	0	amino acid metabolism.degradation.branched-chain group.leucine	"MCCA (3-methylcrotonyl-CoA carboxylase 1) MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. Identical to Methylcrotonoyl-"
MSGI1_534	TC473	32.8	27.7	113.8	50.5	0	-1.2	-1.8	0	amino acid metabolism.synthesis.glutamate family.proline.delta 1-pyrroline-5-carboxylate synthetase	"P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2); catalytic/ glutamate 5-kinase/ glutamate-5-semialdehyde dehydrogenase encodes delta 1-pyrroline-5-carboxylate synthetase B. Gene expression is induced by dehydration, high salt and ABA. Identical to Del"
MSGI1_1435	TC474	19.2	7.8	744.9	17.7	0	-5.4	-5.3	0	amino acid metabolism.synthesis.glutamate family.proline.delta 1-pyrroline-5-carboxylate synthetase	"P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2); catalytic/ glutamate 5-kinase/ glutamate-5-semialdehyde dehydrogenase encodes delta 1-pyrroline-5-carboxylate synthetase B. Gene expression is induced by dehydration, high salt and ABA. Identical to Del"
MSGI1_10783	TC4751	2.4	9.1	22.6	3.1	0	-2.9	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_29962	TC476	4.1	4.4	32.1	37.8	0	0	-3	-3.1	not assigned.unknown	not assigned.unknown
MSGI1_24815	TC4765	2.5	18.6	25.5	13.6	2.9	0	-3.4	0	RNA.regulation of transcription.bZIP transcription factor family	"TGA3 (TGA1a-related gene 3); DNA binding / calmodulin binding / transcription factor Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties. Identical to Trans"
MSGI1_17657	TC4766	68.6	7.1	19.6	11.2	-3.3	0	1.8	0	cell wall.degradation.pectate lyases and polygalacturonases	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G41870.1); similar to Os05g0587000 [Oryz
MSGI1_20799	TC4767	5.5	4.7	23.9	9.2	0	0	-2.1	0	transport.ABC transporters and multidrug resistance systems	ATMRP5 (Arabidopsis thaliana multidrug resistance-associated protein 5) member of MRP subfamily Identical to Multidrug resistance-associated protein 5 (EC 3.6.3.44) (Glutathione S-conjugate-transporting ATPase 5) (ATP-energized glutathione S- conjugate p
MSGI1_9143	TC477	1.3	2.1	36.2	59.9	0	0	-4.8	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_33881	TC4779	68.1	26.5	38.1	27.3	-1.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_8978	TC478	6.8	14.7	0.3	0.1	0	0	0	7.2	not assigned.unknown	not assigned.unknown
MSGI1_5837	TC4788	27.8	28.9	3.5	7.9	0	0	3	1.9	not assigned.unknown	not assigned.unknown
MSGI1_2685	TC479	1.2	1.3	31.4	49.2	0	0	-4.7	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_55428	TC4799	32.3	21.2	11.2	19	0	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_7784	TC480	67.6	43.7	0.3	0.1	0	0	7.8	8.8	not assigned.unknown	not assigned.unknown
MSGI1_9738	TC4800	13.4	13.2	1	1.7	0	0	3.7	0	cell wall	leucine-rich repeat family protein  similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G25470.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G74180.1); similar to leucine-rich repeat family pr
MSGI1_35537	TC482	13.9	15.2	1.6	3	0	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_24814	TC4825	1.8	4.8	18.5	7.8	0	0	-3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_24989	TC483	2.4	1.3	28.7	39.5	0	0	-3.6	-4.9	not assigned.unknown	not assigned.unknown
MSGI1_17508	TC4841	29.4	64	62.7	95	1.1	0	-1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_19143	TC4842	0.9	10.5	33.7	20.1	0	0	-5.2	0	cell.organisation	"ATMAP70-3 (microtubule-associated proteins 70-3); microtubule binding Encodes a microtubule associated protein (MAP70-3). Expressed in all tissues. similar to ATMAP70-2 (microtubule-associated proteins 70-2), microtubule binding [Arabidopsis thaliana] (T"
MSGI1_223	TC485	127	46.7	53.8	35.6	-1.4	0	1.2	0	cell wall	SLP3 (Subtilisin-like serine protease 3); subtilase Encodes a novel subtilisin-like serine protease. similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G30020.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530
MSGI1_223	TC485	127	46.7	53.8	35.6	-1.4	0	1.2	0	protein.degradation.subtilases	SLP3 (Subtilisin-like serine protease 3); subtilase Encodes a novel subtilisin-like serine protease. similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G30020.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530
MSGI1_29184	TC4855	16.8	48.2	28.1	28.2	1.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_18556	TC4856	42.4	55.7	0.9	1.2	0	0	5.6	5.5	not assigned.unknown	not assigned.unknown
MSGI1_29738	TC4860	96.4	101.1	224.1	115.5	0	0	-1.2	0	redox.ascorbate and glutathione.ascorbate	"MDHAR (MONODEHYDROASCORBATE REDUCTASE); monodehydroascorbate reductase (NADH)  Identical to Probable monodehydroascorbate reductase, cytoplasmic isoform 1 (EC 1.6.5.4) (MDAR 1) [Arabidopsis Thaliana] (GB:Q9SR59); similar to monodehydroascorbate reductase"
MSGI1_38162	TC4875	25.4	3.5	7.1	5.7	-2.9	0	1.8	0	lipid metabolism.FA synthesis and FA elongation.ACP protein	"ACP1 (ACYL CARRIER PROTEIN 1) encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Protein is not regulated by light. Identical to Acyl carrier protein 1, chloroplast precursor (ACP) (ACP-1) [Arabidopsis Thaliana] (GB:P11829); simil"
MSGI1_92674	TC4886	5.9	0.1	23.5	2.7	0	-3.1	0	0	misc.short chain dehydrogenase/reductase (SDR)	short-chain dehydrogenase/reductase (SDR) family protein  similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G29260.1); similar to 3-beta hydroxysteroid dehydrogenase [Di (GB:AAV68714.1); contains InterPro
MSGI1_117523	TC4890	7.5	47.9	22.6	36	2.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_23418	TC4892	5.6	14	0.4	0.4	0	0	0	5.1	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G41750.2); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thal"
MSGI1_23418	TC4892	5.6	14	0.4	0.4	0	0	0	5.1	RNA.regulation of transcription.WRKY domain transcription factor family	TTR1 (WRKY domain family protein 16); transcription factor Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. Identical to Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16)
MSGI1_2563	TC49	18.3	27.4	67.1	51.7	0	0	-1.9	0	protein.degradation.subtilases	"subtilase family protein  similar to AIR3 (Auxin-Induced in Root cultures 3), subtilase [Arabidopsis thaliana] (TAIR:AT2G04160.1); similar to subtilisin-like protease [Triticum aestivum] (GB:CAJ75644.1); similar to subtilisin-like protease [Glycine max]"
MSGI1_2563	TC49	18.3	27.4	67.1	51.7	0	0	-1.9	0	cell wall	"subtilase family protein  similar to AIR3 (Auxin-Induced in Root cultures 3), subtilase [Arabidopsis thaliana] (TAIR:AT2G04160.1); similar to subtilisin-like protease [Triticum aestivum] (GB:CAJ75644.1); similar to subtilisin-like protease [Glycine max]"
MSGI1_34989	TC4922	15.5	5.1	32.3	39.7	0	0	0	-3	redox.glutaredoxins	glutaredoxin family protein  Identical to Monothiol glutaredoxin-S2 (AtGrxS2) (GRXS2) [Arabidopsis Thaliana] (GB:Q8L8Z8); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G15680.1); similar to Os01g0368900 [Oryza sativa (japonica cu
MSGI1_24339	TC4923	12.1	12.2	0.9	0.2	0	0	3.7	5.9	stress.biotic	disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT5G27060.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT2G15080.2); similar to disease resistance family protei
MSGI1_24339	TC4923	12.1	12.2	0.9	0.2	0	0	3.7	5.9	cell wall	disease resistance family protein  similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT5G27060.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT2G15080.2); similar to disease resistance family protei
MSGI1_66498	TC4925	7.3	29	26.9	54.6	2	0	-1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_3527	TC4926	401.9	1.2	55.9	0.5	-8.4	-6.8	2.8	0	cell wall	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25460.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain Protein of unknown function DUF642
MSGI1_42666	TC4928	14.2	19.4	3.7	26	0	2.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_85721	TC4937	1.4	1.6	17.1	16	0	0	-3.6	-3.3	not assigned.unknown	not assigned.unknown
MSGI1_14655	TC4949	20.2	39.8	41.7	8.2	0	-2.3	0	2.3	not assigned.unknown	not assigned.unknown
MSGI1_37233	TC4950	33.1	10.4	7.2	16.5	-1.7	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_46154	TC4953	17.3	2.4	7.3	2.3	-2.8	0	0	0	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G01890.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsi"
MSGI1_46154	TC4953	17.3	2.4	7.3	2.3	-2.8	0	0	0	signalling.receptor kinases.leucine rich repeat VII	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G01890.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsi"
MSGI1_7799	TC4964	136.7	72.6	46.7	91.6	0	1	1.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L7A (RPL7aB)  Identical to 60S ribosomal protein L7a-2 (RPL7AB) [Arabidopsis Thaliana] (GB:Q9LZH9); similar to 60S ribosomal protein L7A (RPL7aA) [Arabidopsis thaliana] (TAIR:AT2G47610.1); similar to 60S ribosomal protein L7A-like pr
MSGI1_10706	TC4973	61.1	50.4	0	0	0	0	6.9	6.7	not assigned.unknown	not assigned.unknown
MSGI1_29737	TC4982	104.3	32.4	22.3	41.5	-1.7	0	2.2	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_29737	TC4982	104.3	32.4	22.3	41.5	-1.7	0	2.2	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_6532	TC499	216.4	357.8	129	266.9	0	1	0	0	cell wall.cell wall proteins.AGPs	FLA12 (fasciclin-like arabinogalactan-protein 12)  Identical to Fasciclin-like arabinogalactan protein 12 precursor (FLA12) [Arabidopsis Thaliana] (GB:Q8LEE9;GB:Q94EG7;GB:Q9FKJ8); similar to FLA11 (fasciclin-like arabinogalactan-protein 11) [Arabidopsis t
MSGI1_34988	TC4995	0	0	14.7	11.5	0	0	-4.9	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_17558	TC4997	20.1	28.7	59	38.3	0	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_52257	TC4999	8	13.1	34.5	12.5	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_26570	TC500	231.9	390.9	125.7	290.6	0	1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_36085	TC5003	23.7	3.1	4.6	4.2	-2.9	0	2.4	0	"misc.gluco-, galacto- and mannosidases"	"BGAL10 (beta-galactosidase 10); beta-galactosidase member of Glycoside Hydrolase Family 35 similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative"
MSGI1_36085	TC5003	23.7	3.1	4.6	4.2	-2.9	0	2.4	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL10 (beta-galactosidase 10); beta-galactosidase member of Glycoside Hydrolase Family 35 similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative"
MSGI1_24255	TC5004	4.5	4.9	26	3.6	0	-2.9	-2.5	0	cell.organisation	ankyrin repeat family protein  similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT5G60070.1); similar to Os03g0281100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049741.1); similar to Ankyrin [Medicago truncatula] (GB:ABE80012.
MSGI1_17772	TC5011	8.3	6.2	53.6	13.5	0	-2	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_14861	TC5019	16.5	26.3	16.7	6.8	0	0	0	2	minor CHO metabolism.raffinose family.galactinol synthases.known	"ATGOLS1 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 1); transferase, transferring hexosyl groups  similar to ATGOLS2 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 2), transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabido"
MSGI1_26132	TC502	58.3	52.5	27.9	41.6	0	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_14930	TC5027	13.4	24.7	3.3	2.9	0	0	0	3.1	cell wall.degradation.pectate lyases and polygalacturonases	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT3G15720.1); similar to PGN [Glycine max]
MSGI1_185	TC503	93.6	67.3	100.7	41.1	0	-1.3	0	0	"misc.gluco-, galacto- and mannosidases"	"BGAL1 (BETA GALACTOSIDASE 1); beta-galactosidase beta-galactosidase, glycosyl hydrolase family 35 similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1); similar to BGAL3 (beta-galactosidase 3), beta-galacto"
MSGI1_185	TC503	93.6	67.3	100.7	41.1	0	-1.3	0	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BGAL1 (BETA GALACTOSIDASE 1); beta-galactosidase beta-galactosidase, glycosyl hydrolase family 35 similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1); similar to BGAL3 (beta-galactosidase 3), beta-galacto"
MSGI1_81401	TC5031	4.8	9.1	19.5	2.5	0	-3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_71657	TC5033	5.2	7.2	31.4	9	0	-1.8	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_15120	TC5039	7.5	14.4	0.4	0.6	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_23584	TC5049	39.6	24.2	82.6	64.3	0	0	-1.1	-1.4	PS.lightreaction.photosystem II.LHC-II	"LHCB4.3 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II Identical to Chlorophyll a-b binding protein CP29.3, chloroplast precursor (LHCII protein 4.3) (LHCB4.3) (LHCB4.3) [Arabidop"
MSGI1_30350	TC5051	2.1	2.3	18.3	17	0	0	-3.1	-2.9	"RNA.regulation of transcription.SBP,Squamosa promoter binding protein family"	SPL7 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7); DNA binding / transcription factor SQUAMOSA promoter binding proteins Identical to Squamosa promoter-binding-like protein 7 (SPL7) [Arabidopsis Thaliana] (GB:Q8S9G8;GB:Q8VZV0;GB:Q9S723;GB:Q9SMY1); similar
MSGI1_30350	TC5051	2.1	2.3	18.3	17	0	0	-3.1	-2.9	development.unspecified	SPL7 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7); DNA binding / transcription factor SQUAMOSA promoter binding proteins Identical to Squamosa promoter-binding-like protein 7 (SPL7) [Arabidopsis Thaliana] (GB:Q8S9G8;GB:Q8VZV0;GB:Q9S723;GB:Q9SMY1); similar
MSGI1_50311	TC5057	4.7	100.1	5.1	8.2	4.4	0	0	3.6	not assigned.unknown	not assigned.unknown
MSGI1_7403	TC507	125.8	84.1	64.6	97.4	0	0	1	0	cell.cycle.peptidylprolyl isomerase	ROC7 (rotamase CyP 7); peptidyl-prolyl cis-trans isomerase Encodes cyclophilin ROC7. Identical to Peptidyl-prolyl cis-trans isomerase CYP20-1 precursor (EC 5.2.1.8) (PPIase CYP20-1) (Rotamase cyclophilin-7) (Cyclophilin of 20 kDa 1) (CYP20-1) [Arabidopsi
MSGI1_11315	TC5071	25.6	11.1	5.9	11.6	0	0	2.1	0	lipid metabolism.FA synthesis and FA elongation.enoyl ACP reductase	"MOD1 (MOSAIC DEATH 1); enoyl-[acyl-carrier-protein] reductase (NADH)/ oxidoreductase Encodes enoyl-ACP reductase a component of the fatty acid synthase complex.  A reduced function mutation in this gene, mod1, was found in a screen for premature cell dea"
MSGI1_34331	TC5073	3.6	4.7	19.8	6.9	0	0	-2.5	0	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to ATP binding / protein binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT1G72840.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thalia"
MSGI1_34331	TC5073	3.6	4.7	19.8	6.9	0	0	-2.5	0	RNA.regulation of transcription.WRKY domain transcription factor family	TTR1 (WRKY domain family protein 16); transcription factor Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. Identical to Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16)
MSGI1_18484	TC5078	164.8	83.5	54.1	80.3	0	0	1.6	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S23 (RPS23B)  Identical to 40S ribosomal protein S23-2 (S12) (RPS23B) [Arabidopsis Thaliana] (GB:P49201;GB:Q9LYY9); similar to 40S ribosomal protein S23 (RPS23A) [Arabidopsis thaliana] (TAIR:AT3G09680.1); similar to Ribosomal protei
MSGI1_50793	TC5084	81.1	42.6	24.6	50.8	0	0	1.7	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S14 (RPS14B)  Identical to 40S ribosomal protein S14-2 (RPS14B) [Arabidopsis Thaliana] (GB:Q9CAX6); Identical to 40S ribosomal protein S14-1 (RPS14A) [Arabidopsis Thaliana] (GB:Q9SIH0); similar to 40S ribosomal protein S14 (RPS14A) [
MSGI1_19795	TC5091	2.7	2.9	24.4	12	0	0	-3.2	0	RNA.processing	pre-mRNA cleavage complex-related  similar to S-locus protein-related [Arabidopsis thaliana] (TAIR:AT5G43620.1); similar to Os08g0187700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061151.1); similar to putative pre-mRNA cleavage complex II protein
MSGI1_23298	TC5101	9.6	35.5	39.8	6.2	1.9	-2.7	-2.1	2.5	not assigned.unknown	not assigned.unknown
MSGI1_37378	TC5102	266.1	2.4	48.9	5.7	-6.8	-3.1	2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_15764	TC5103	2	34.2	10.5	30.1	4.1	0	0	0	metal handling.acquisition	"ATFRO8/FRO8 (FERRIC REDUCTION OXIDASE 8); ferric-chelate reductase/ oxidoreductase Encodes a ferric chelate reductase that is expressed in shoots and flowers. similar to FRO1 (FERRIC REDUCTION OXIDASE 1), ferric-chelate reductase [Arabidopsis thaliana] ("
MSGI1_47592	TC5111	16.4	4	32.3	7.3	0	-2.1	0	0	stress.biotic	pathogenesis-related family protein  similar to pathogenesis-related protein-like protein [Medicago truncatula] (GB:ABE85366.1); contains domain NTF2-like (SSF54427)
MSGI1_63196	TC5123	7.9	0.2	43.5	0.2	0	-7.8	-2.5	0	secondary metabolism.wax	"CER1 protein, putative  similar to CER1 protein, putative [Arabidopsis thaliana] (TAIR:AT2G37700.1); similar to CER1 (ECERIFERUM 1) [Arabidopsis thaliana] (TAIR:AT1G02205.2); similar to Sterol desaturase [Medicago truncatula] (GB:ABD28316.1); similar to"
MSGI1_22530	TC5127	12.7	21.5	5.6	2.4	0	0	0	3.2	not assigned.unknown	not assigned.unknown
MSGI1_31099	TC5132	19	15.9	41.7	13.1	0	-1.7	0	0	nucleotide metabolism.degradation	dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein  similar to senescencs-related protein [Pyrus pyrifolia] (GB:BAA86060.1); similar to putative dehydrogenase [Lycopersicon esculentum] (GB:AAN64920.1); similar to Dihydroor
MSGI1_41882	TC5138	10.7	10.1	32.9	10.3	0	-1.7	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_118062	TC5140	25.2	24.6	2.4	12.3	0	0	3.4	0	not assigned.unknown	not assigned.unknown
MSGI1_41702	TC5141	18.4	2.3	1.1	1.3	-3	0	4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_70729	TC5142	15	28.5	17.7	8.3	0	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_43185	TC5148	2.8	27	13.5	18.8	3.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_114943	TC516	19.4	27.7	6.2	6.8	0	0	0	2	not assigned.unknown	not assigned.unknown
MSGI1_2234	TC517	90.1	183	164.4	95.2	1	0	0	0	transport.misc	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  Identical to Patellin-5 (PATL5) [Arabidopsis Thaliana] (GB:Q9M0R2); similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis
MSGI1_2234	TC517	90.1	183	164.4	95.2	1	0	0	0	DNA.unspecified	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  Identical to Patellin-5 (PATL5) [Arabidopsis Thaliana] (GB:Q9M0R2); similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis
MSGI1_94949	TC5175	4.1	8	30.1	1.3	0	-4.5	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_33244	TC5179	14.2	8.3	38.6	8.5	0	-2.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_32038	TC5207	3.7	7.3	39.5	9.1	0	-2.1	-3.4	0	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS11 (Arabidopsis thaliana trehalose phosphatase/synthase 11); transferase, transferring glycosyl groups Encodes an enzyme putatively involved in trehalose biosynthesis.  The protein has a trehalose synthase (TPS)-like domain that may or may not be ac"
MSGI1_25142	TC5233	21.1	14.8	3.9	11.6	0	0	2.4	0	amino acid metabolism.degradation.glutamate family.arginine	UREG (urease accessory protein G); metal ion binding / nucleotide binding Encodes a urease accessory protein which is essential for the activation of plant urease. similar to urease accessory protein G [Solanum tuberosum] (GB:CAC33003.1); contains InterP
MSGI1_12085	TC524	147.7	157.2	168.2	414.8	0	1.3	0	-1.4	RNA.RNA binding	"ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circa"
MSGI1_7546	TC525	284.8	234.1	204.9	581.2	0	1.5	0	-1.3	RNA.RNA binding	"ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circa"
MSGI1_24254	TC5261	6.2	11.5	15	1.7	0	-3.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_20407	TC5277	22	8.4	5.4	6.7	0	0	2	0	not assigned.unknown	not assigned.unknown
MSGI1_13975	TC5280	8.7	13.8	31	9	0	-1.8	-1.8	0	"RNA.regulation of transcription.G2-like transcription factor family, GARP"	MYR1 (MYB-RELATED PROTEIN 1); transcription factor Encodes MYR1 (MYR1). similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT3G04030.2); similar to Os03g0325500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049984.1); similar to
MSGI1_48271	TC5289	13.1	9.8	0	0	0	0	4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_15693	TC5291	20.5	42.4	20.2	15.1	0	0	0	1.5	stress.biotic	"pathogenesis-related thaumatin family protein  similar to pathogenesis-related thaumatin family protein [Arabidopsis thaliana] (TAIR:AT2G17860.1); similar to Thaumatin, pathogenesis-related [Medicago truncatula] (GB:ABE77925.1); contains InterPro domain"
MSGI1_25353	TC5297	8.8	18.3	0.1	0.1	0	0	0	7.5	not assigned.unknown	not assigned.unknown
MSGI1_16953	TC53	0.1	0.2	30.8	53.2	0	0	-8.3	-8.1	cell wall	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_16953	TC53	0.1	0.2	30.8	53.2	0	0	-8.3	-8.1	protein.degradation.subtilases	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_15219	TC532	50.7	94.4	37.6	73.2	0	1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_69434	TC5334	7.1	7	31.2	28.5	0	0	-2.1	-2	not assigned.unknown	not assigned.unknown
MSGI1_28821	TC5338	20	5	20.4	25.9	0	0	0	-2.4	stress.biotic	acidic endochitinase (CHIB1)  Identical to Acidic endochitinase precursor (EC 3.2.1.14) (CHIB1) [Arabidopsis Thaliana] (GB:O22072;GB:O22073;GB:O24614;GB:Q5HYZ8); similar to acidic endochitinase (GB:AAA32768.1); contains InterPro domain Glycoside hydrolas
MSGI1_6271	TC5339	6.3	13.1	37	12	0	-1.6	-2.6	0	transport.ABC transporters and multidrug resistance systems	ATGCN1 (Arabidopsis thaliana general control non-repressible 1) member of GCN subfamily similar to ATGCN4 (Arabidopsis thaliana general control non-repressible 4) [Arabidopsis thaliana] (TAIR:AT3G54540.1); similar to ABC transporter homolog [Populus nigr
MSGI1_52795	TC5344	19.9	168.8	14.3	92.6	3.1	2.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_20744	TC5362	3.4	32.6	3.4	22	3.3	2.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_3827	TC5364	30.8	6.2	7.4	3.4	-2.3	0	2.1	0	cell wall.pectin*esterases.acetyl esterase	"pectinacetylesterase, putative  similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT3G05910.1); similar to Pectinacetylesterase [Medicago truncatula] (GB:ABD33181.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963"
MSGI1_29851	TC5367	35.7	0.5	8.8	2.4	-6.2	0	2	0	secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase	"CHS (CHALCONE SYNTHASE); naringenin-chalcone synthase Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids.  Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of"
MSGI1_26870	TC5396	101.5	218.3	133.7	324.8	1.1	1.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_20981	TC5398	1.2	7.3	27.2	18.2	0	0	-4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_44182	TC5419	5.6	15.8	10.9	1.4	0	0	0	3.5	not assigned.unknown	not assigned.unknown
MSGI1_24900	TC5445	14.3	1	19.4	0.5	-3.8	-5.3	0	0	secondary metabolism.simple phenols	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_23738	TC5446	8.9	11.6	0.5	0.5	0	0	0	4.5	not assigned.unknown	not assigned.unknown
MSGI1_1358	TC545	0	0	843.7	1311.7	0	0	-10.7	-11.4	metal handling.regulation	"ILR2 (IAA-LEUCINE RESISTANT 2) Encodes a novel protein with no predicted membrane-spanning domains that is polymorphic among Arabidopsis accessions.  The protein may modulate a metal transporter. Mutants are resistant to IAA-Leu, IAA-Phe, and the divalen"
MSGI1_68569	TC5457	4.2	6.2	43.5	62	0	0	-3.4	-3.3	RNA.regulation of transcription.bZIP transcription factor family	GBF5 (G-box binding factor 5); DNA binding / transcription factor Encodes a b-ZIP transcription factor. similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G75390.1); similar to cAMP response element binding (CREB) protein
MSGI1_59470	TC5458	0.9	2.7	12.7	4.6	0	0	-3.8	0	not assigned.unknown	not assigned.unknown
MSGI1_6253	TC546	236.3	150.6	107.2	168.7	0	0	1.1	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L10 (RPL10B)  Identical to 60S ribosomal protein L10-2 (Wilms tumor suppressor protein homolog) (RPL10B) [Arabidopsis Thaliana] (GB:Q08770;GB:Q42327;GB:Q9ZVG7); similar to 60S ribosomal protein L10 (RPL10A) / Wilm's tumor suppressor
MSGI1_43592	TC5465	3.8	3.6	23.7	6.4	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_20406	TC547	146.6	69.8	54.5	110.5	-1.1	1	1.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L10 (RPL10A) / Wilm's tumor suppressor protein-related  Identical to 60S ribosomal protein L10-1 (RPL10A) [Arabidopsis Thaliana] (GB:Q93VT9); similar to 60S ribosomal protein L10 (RPL10B) [Arabidopsis thaliana] (TAIR:AT1G26910.1); si
MSGI1_40421	TC5470	118.8	158.6	0.1	0	0	0	10.2	8.3	not assigned.unknown	not assigned.unknown
MSGI1_69913	TC5477	7	6.7	26.7	7.6	0	0	-1.9	0	signalling.calcium	"CPK33 (calcium-dependent protein kinase 33); calcium- and calmodulin-dependent protein kinase/ kinase member of Calcium Dependent Protein Kinase similar to CPK9 (CALMODULIN-DOMAIN PROTEIN KINASE 9), calcium- and calmodulin-dependent protein kinase/ kinas"
MSGI1_26959	TC5482	6.7	12	34.3	12.7	0	0	-2.4	0	misc.acid and other phosphatases	"ATPAP18/PAP18 (purple acid phosphatase 18); acid phosphatase/ protein serine/threonine phosphatase  similar to ATPAP22/PAP22 (purple acid phosphatase 22), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT3G52820.1); s"
MSGI1_23482	TC5494	7.6	62.8	25.4	6.7	3	-1.9	0	3.2	not assigned.unknown	not assigned.unknown
MSGI1_57030	TC55	16	31.4	49.4	39.9	0	0	-1.6	0	stress.abiotic.heat	"heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)  Identical to Heat shock cognate 70 kDa protein 3 (Hsc70.3) (HSC70-3) [Arabidopsis Thaliana] (GB:O65719;GB:Q42345); similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR"
MSGI1_15041	TC550	43.5	45.9	17.3	33	0	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_54659	TC5502	17.7	1.4	9.3	4.9	-3.7	0	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	"ELI3-2 (ELICITOR-ACTIVATED GENE 3) Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria.  Though similar to mannitol dehydrogenases, this enzyme does not have"
MSGI1_6633	TC552	34.8	25.6	9.2	22.4	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_41701	TC5525	6.2	13.5	59.7	10.9	0	-2.5	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_35117	TC5531	4.9	10.7	8.1	27.4	0	1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_25577	TC5533	205.5	108.8	60.8	133.8	0	1.1	1.8	0	protein.synthesis.misc ribososomal protein	"60s acidic ribosomal protein P1, putative  similar to 60S acidic ribosomal protein P1 (RPP1B) [Arabidopsis thaliana] (TAIR:AT4G00810.2); similar to ribosomal protein P1 [Triticum aestivum] (GB:AAW50990.1); contains InterPro domain Ribosomal protein 60S;"
MSGI1_42073	TC5535	2.6	14.2	31	14.1	0	0	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_61080	TC5540	31.1	6.2	28.1	18.5	-2.3	0	0	0	PS.lightreaction.photosystem I.LHC-I	"LHCA6 (Photosystem I light harvesting complex gene 6); chlorophyll binding PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA, similar to LHCA2 (Photosystem I light harvesting complex gene 2), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT3G"
MSGI1_41879	TC5547	1	20.4	4.4	19	4.4	0	0	0	cell wall	"CYP76C1 (cytochrome P450, family 76, subfamily C, polypeptide 1); heme binding / iron ion binding / monooxygenase cytochrome P450 monooxygenase Identical to Cytochrome P450 76C1 (EC 1.14.-.-) (CYP76C1) [Arabidopsis Thaliana] (GB:O64636;GB:O65783); simila"
MSGI1_41879	TC5547	1	20.4	4.4	19	4.4	0	0	0	misc.cytochrome P450	"CYP76C1 (cytochrome P450, family 76, subfamily C, polypeptide 1); heme binding / iron ion binding / monooxygenase cytochrome P450 monooxygenase Identical to Cytochrome P450 76C1 (EC 1.14.-.-) (CYP76C1) [Arabidopsis Thaliana] (GB:O64636;GB:O65783); simila"
MSGI1_24570	TC5570	42	16.1	22.4	29.3	-1.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_7491	TC5588	6.7	11.8	0.6	0.5	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_1080	TC559	63	68.6	51	116.6	0	1.2	0	0	major CHO metabolism.synthesis.starch.AGPase	ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1); glucose-1-phosphate adenylyltransferase Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. T
MSGI1_31676	TC5592	0	0	42.2	80.3	0	0	-6.4	-7.3	not assigned.unknown	not assigned.unknown
MSGI1_43817	TC56	150.7	75.5	44.7	96.2	0	1.1	1.8	0	stress.abiotic.heat	"heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)  Identical to Heat shock cognate 70 kDa protein 3 (Hsc70.3) (HSC70-3) [Arabidopsis Thaliana] (GB:O65719;GB:Q42345); similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR"
MSGI1_6424	TC5629	26.8	23.1	0	0	0	0	5.7	5.5	RNA.regulation of transcription.unclassified	"ATRBP45B; RNA binding  similar to RNA-binding protein 45 (RBP45), putative [Arabidopsis thaliana] (TAIR:AT4G27000.1); similar to putative RNA Binding Protein 45 [Oryza sativa (japonica cultivar-group)] (GB:BAD05744.1); similar to Os08g0190200 [Oryza sati"
MSGI1_51978	TC5630	9.5	23.4	2.1	19.5	0	3.2	0	0	cell wall.cellulose synthesis.cellulose synthase	"IRX3 (IRREGULAR XYLEM 3, MURUS 10); cellulose synthase encodes a xylem-specific cellulose synthase Identical to Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) (CESA7) [Arabidopsis Thal"
MSGI1_4889	TC5635	0	0	23.8	27.4	0	0	-5.6	-5.8	protein.degradation	"latex-abundant protein, putative (AMC4) / caspase family protein  similar to latex-abundant protein, putative (AMC7) / caspase family protein [Arabidopsis thaliana] (TAIR:AT1G79340.1); similar to metacaspase 1 [Lycopersicon esculentum] (GB:AAM51555.1); c"
MSGI1_22892	TC5646	4.5	2.8	18.1	1.8	0	-3.3	0	0	protein.postranslational modification	"protein phosphatase 2C, putative / PP2C, putative  similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT5G66080.1); similar to protein phosphatase 2c-like protein [Thellun (GB:AAM19705.1); contains InterPr"
MSGI1_66086	TC5656	79.5	28.1	110.1	32.6	-1.5	-1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_10842	TC5666	9.1	0.5	275.4	0.2	0	-10.4	-4.9	0	development.unspecified	"ANAC019 (Arabidopsis NAC domain containing protein 19); transcription factor encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro. Identical to NAC domain-conta"
MSGI1_10842	TC5666	9.1	0.5	275.4	0.2	0	-10.4	-4.9	0	RNA.regulation of transcription.NAC domain transcription factor family	"ANAC019 (Arabidopsis NAC domain containing protein 19); transcription factor encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro. Identical to NAC domain-conta"
MSGI1_10842	TC5666	9.1	0.5	275.4	0.2	0	-10.4	-4.9	0	cell wall	"ANAC019 (Arabidopsis NAC domain containing protein 19); transcription factor encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro. Identical to NAC domain-conta"
MSGI1_10842	TC5666	9.1	0.5	275.4	0.2	0	-10.4	-4.9	0	cell wall	"ANAC019 (Arabidopsis NAC domain containing protein 19); transcription factor encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro. Identical to NAC domain-conta"
MSGI1_23737	TC5678	2.4	18.7	1.4	0.6	3	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_28883	TC5680	40.5	33.6	12	25	0	0	1.8	0	protein.postranslational modification	"zinc-binding protein, putative / protein kinase C inhibitor, putative  similar to zinc-binding protein, putative / protein kinase C inhibitor, putative [Arabidopsis thaliana] (TAIR:AT1G31160.1); similar to Histidine triad (HIT) protein [Medicago truncatu"
MSGI1_10422	TC570	32.2	17.2	8.7	15	0	0	1.9	0	stress.abiotic.heat	"HSP60 (Heat shock protein 60); ATP binding / protein binding / unfolded protein binding mitochondrial chaperonin HSP. assist in  rapid assembly of the oligomeric protein structures in the mitochondria. Identical to Chaperonin CPN60, mitochondrial precurs"
MSGI1_10422	TC570	32.2	17.2	8.7	15	0	0	1.9	0	protein.folding	"HSP60 (Heat shock protein 60); ATP binding / protein binding / unfolded protein binding mitochondrial chaperonin HSP. assist in  rapid assembly of the oligomeric protein structures in the mitochondria. Identical to Chaperonin CPN60, mitochondrial precurs"
MSGI1_1262	TC5724	10.7	15.4	0	0	0	0	0	4.9	DNA.synthesis/chromatin structure	"DEAD/DEAH box helicase, putative (RH10)  Identical to DEAD-box ATP-dependent RNA helicase 10 (EC 3.6.1.-) (RH10) [Arabidopsis Thaliana] (GB:Q8GY84;GB:Q8LA24;GB:Q9FME1;GB:Q9ZS10); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT"
MSGI1_72141	TC573	6.7	10.1	1.4	0.2	0	0	0	5.7	gluconeogenese/ glyoxylate cycle.pyruvate dikinase	"PPDK (PYRUVATE ORTHOPHOSPHATE DIKINASE); kinase/ pyruvate, phosphate dikinase The product of this long transcript was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. They were al"
MSGI1_39005	TC5730	5.5	15.1	0	0	0	0	0	4.9	stress.biotic	"disease resistance protein (NBS-LRR class), putative  Identical to Putative disease resistance protein At1g61300 [Arabidopsis Thaliana] (GB:O64790); similar to ATP binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G61180.2); similar to disease re"
MSGI1_28547	TC5736	9.3	12.4	42.1	1.1	0	-5.3	-2.2	0	DNA.repair	heavy-metal-associated domain-containing protein  similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G23760.1); similar to Unknown (protein for MGC:78286) [Mus musculus] (GB:AAH71252.1); contains InterPro domain He
MSGI1_12919	TC5745	16.1	17	0.5	0.5	0	0	5	5.1	not assigned.unknown	not assigned.unknown
MSGI1_4255	TC575	11.4	15.1	2	0.2	0	0	0	6.2	gluconeogenese/ glyoxylate cycle.pyruvate dikinase	"PPDK (PYRUVATE ORTHOPHOSPHATE DIKINASE); kinase/ pyruvate, phosphate dikinase The product of this long transcript was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. They were al"
MSGI1_83862	TC5753	0.1	0	7	16.5	0	0	0	-5	not assigned.unknown	not assigned.unknown
MSGI1_27617	TC5758	10.6	17.2	3.3	1.8	0	0	0	3.3	not assigned.unknown	not assigned.unknown
MSGI1_18675	TC5759	53.2	2	15.1	11.8	-4.7	0	1.8	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G29670.1); similar to GDSL-lipase 1 [Capsicum annuum] (GB:AAZ23955.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; ("
MSGI1_18675	TC5759	53.2	2	15.1	11.8	-4.7	0	1.8	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_18675	TC5759	53.2	2	15.1	11.8	-4.7	0	1.8	0	cell wall	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G29670.1); similar to GDSL-lipase 1 [Capsicum annuum] (GB:AAZ23955.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; ("
MSGI1_495	TC576	68.5	86.5	176.4	105.7	0	0	-1.4	0	RNA.regulation of transcription.EIN3-like(EIL) transcription factor family	"EIN3 (ETHYLENE-INSENSITIVE3); transcription factor ethylene-insensitive3 Identical to ETHYLENE-INSENSITIVE3 protein (EIN3) [Arabidopsis Thaliana] (GB:O24606;GB:Q8VYW4); similar to EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1), transcription factor [Arabidopsis tha"
MSGI1_495	TC576	68.5	86.5	176.4	105.7	0	0	-1.4	0	hormone metabolism.ethylene.signal transduction	"EIN3 (ETHYLENE-INSENSITIVE3); transcription factor ethylene-insensitive3 Identical to ETHYLENE-INSENSITIVE3 protein (EIN3) [Arabidopsis Thaliana] (GB:O24606;GB:Q8VYW4); similar to EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1), transcription factor [Arabidopsis tha"
MSGI1_35115	TC5771	28.6	14.6	41.7	7.2	0	-2.5	0	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	"BEE3 (BR ENHANCED EXPRESSION 3); DNA binding / transcription factor  similar to BEE1 (BR ENHANCED EXPRESSION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT1G18400.1); similar to putative bZIPtranscription factor protein [Brassica oleracea] (GB:"
MSGI1_35812	TC5784	13.3	15.1	1.3	1.8	0	0	3.4	3.1	not assigned.unknown	not assigned.unknown
MSGI1_54906	TC5785	8	7.5	37.4	13.1	0	-1.5	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_3861	TC579	41.2	28	208.8	31.5	0	-2.7	-2.3	0	major CHO metabolism.degradation.starch.starch cleavage	"BMY7/TR-BAMY (beta-amylase 7); beta-amylase  similar to CT-BMY (BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to beta-amylase 1 [Nicotiana langsdorffii x Nicotiana sanderae] (GB:AAY89374.1); similar to putative chloropl"
MSGI1_25965	TC5795	3.2	6.6	21.1	12.5	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_9451	TC580	33.2	22.8	111.4	15.5	0	-2.8	-1.7	0	major CHO metabolism.degradation.starch.starch cleavage	"BMY7/TR-BAMY (beta-amylase 7); beta-amylase  similar to CT-BMY (BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to beta-amylase 1 [Nicotiana langsdorffii x Nicotiana sanderae] (GB:AAY89374.1); similar to putative chloropl"
MSGI1_978	TC581	101.9	78.1	57.2	119.2	0	1.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_16902	TC5810	29.4	46.1	47.8	14.9	0	-1.7	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_43390	TC5811	1.9	25.3	12.8	8	3.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_58254	TC5828	20.5	23.7	156	26.2	0	-2.6	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_36507	TC5831	21.8	2.9	8.5	5.2	-2.9	0	0	0	cell wall.cellulose synthesis	"ATCSLC05 (Cellulose synthase-like C5); transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLC08 (Cellulose synthase-like C8), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G246"
MSGI1_18153	TC5832	1.4	15.6	5.5	9.7	3.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_4660	TC584	280.2	149.7	121.1	177.6	0	0	1.2	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L7 (RPL7B)  Identical to 60S ribosomal protein L7-2 (RPL7B) [Arabidopsis Thaliana] (GB:P60040;GB:O80581;GB:Q42208;GB:Q9ZU42); similar to 60S ribosomal protein L7 (RPL7D) [Arabidopsis thaliana] (TAIR:AT3G13580.1); similar to 60S ribo
MSGI1_65732	TC5852	5.8	17.4	47.2	15.6	0	-1.6	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_4403	TC586	246.4	111.8	98.1	109.5	-1.1	0	1.3	0	cell wall.precursor synthesis.UGD	"UDP-glucose 6-dehydrogenase, putative  similar to ATUGD1/UGD1 (UDP-glucose dehydrogenase 1), UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G26570.1); similar to UDP-glucose 6-dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G39320.1)"
MSGI1_13726	TC5864	4.7	13.1	0.1	0.7	0	0	0	4.2	not assigned.unknown	not assigned.unknown
MSGI1_112381	TC587	11.7	5.4	0	0	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_1625	TC588	86.7	38.3	181.8	67.2	-1.2	-1.4	-1.1	0	hormone metabolism.jasmonate.synthesis-degradation.allene oxidase synthase	AOS (ALLENE OXIDE SYNTHASE); hydro-lyase/ oxygen binding Encodes a member of the  cytochrome p450 CYP74 gene family that functions as an allene oxide synthase. This enzyme catalyzes dehydration of the hydroperoxide to an unstable allene oxide in the JA b
MSGI1_3235	TC589	57	114.9	304.4	141.1	1	-1.1	-2.4	0	secondary metabolism.phenylpropanoids	"O-diphenol-O-methyl transferase, putative  similar to ATOMT1 (O-METHYLTRANSFERASE 1) [Arabidopsis thaliana] (TAIR:AT5G54160.1); similar to S-adenosyl-L-methionine: beta-alanine N-methyltransferase [Limonium latifolium] (GB:AAP03058.1); contains InterPro"
MSGI1_3235	TC589	57	114.9	304.4	141.1	1	-1.1	-2.4	0	misc.O- methyl transferases	"O-diphenol-O-methyl transferase, putative  similar to ATOMT1 (O-METHYLTRANSFERASE 1) [Arabidopsis thaliana] (TAIR:AT5G54160.1); similar to S-adenosyl-L-methionine: beta-alanine N-methyltransferase [Limonium latifolium] (GB:AAP03058.1); contains InterPro"
MSGI1_49162	TC5891	97.1	608	190.8	496.7	2.6	1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_25809	TC59	6.6	7.2	37.5	50.3	0	0	-2.5	-2.8	protein.degradation.subtilases	"subtilase family protein  similar to AIR3 (Auxin-Induced in Root cultures 3), subtilase [Arabidopsis thaliana] (TAIR:AT2G04160.1); similar to subtilisin-like protease [Triticum aestivum] (GB:CAJ75644.1); similar to subtilisin-like protease [Glycine max]"
MSGI1_3917	TC590	31.4	86.3	55.8	43.8	1.5	0	0	0	misc.O- methyl transferases	"O-diphenol-O-methyl transferase, putative  similar to ATOMT1 (O-METHYLTRANSFERASE 1) [Arabidopsis thaliana] (TAIR:AT5G54160.1); similar to S-adenosyl-L-methionine: beta-alanine N-methyltransferase [Limonium latifolium] (GB:AAP03058.1); contains InterPro"
MSGI1_3917	TC590	31.4	86.3	55.8	43.8	1.5	0	0	0	secondary metabolism.phenylpropanoids	"O-diphenol-O-methyl transferase, putative  similar to ATOMT1 (O-METHYLTRANSFERASE 1) [Arabidopsis thaliana] (TAIR:AT5G54160.1); similar to S-adenosyl-L-methionine: beta-alanine N-methyltransferase [Limonium latifolium] (GB:AAP03058.1); contains InterPro"
MSGI1_114419	TC5907	14.5	0.4	1.6	1.3	-5.2	0	3.2	0	secondary metabolism.flavonoids.flavonols	UDP-glucoronosyl/UDP-glucosyl transferase family protein The At1g30530 gene encodes a UDP-rhamnose:flavonol-3-O-rhamnosyltransferase (UGT78D1) attaching a rhamnosyl residue to the 3-O-position of the flavonols kaempferol and quercetin Identical to Anthocy
MSGI1_6484	TC591	229.6	151.5	94.4	207	0	1.1	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_78527	TC5917	1.1	12.7	10.2	2.9	3.5	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_39210	TC5928	42	6.2	6.1	5.7	-2.8	0	2.8	0	cell wall.degradation.pectate lyases and polygalacturonases	JP630; polygalacturonase Encodes aromatic rich glycoprotein JP630. Identical to Probable polygalacturonase non-catalytic subunit JP630 precursor (Aromatic-rich glycoprotein JP630) (JP630) [Arabidopsis Thaliana] (GB:P92982;GB:Q9S9K5); similar to BURP doma
MSGI1_115818	TC5930	0.2	0.2	7.6	11.1	0	0	0	-5.8	N-metabolism.ammonia metabolism.glutamate synthase.ferredoxin dependent	"GLU2 (Glutamate synthase) Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression is most abundant in root. Identical to Ferredoxin-dependent glutamate synthase 2, chloroplast precursor (EC 1.4.7.1) (Fd-"
MSGI1_83861	TC5931	9.4	8.7	15.1	28.8	0	0	0	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_51976	TC5936	12.7	11.1	37.2	17.8	0	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_61075	TC5942	0	0.1	11.9	17.7	0	0	-4.6	-7.5	not assigned.unknown	not assigned.unknown
MSGI1_1807	TC595	21.7	100.5	118.8	18.9	2.2	-2.7	-2.5	2.4	not assigned.unknown	not assigned.unknown
MSGI1_71197	TC5950	0	0.5	6.3	11.1	0	0	0	-4.5	not assigned.unknown	not assigned.unknown
MSGI1_46587	TC5960	10.7	20.1	34	12.7	0	0	-1.7	0	transport.ABC transporters and multidrug resistance systems	"PGP4 (P-GLYCOPROTEIN 4, P-GLYCOPROTEIN4); ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase Multidrug resistance  P-glycoprotein (MDR/PGP) subfamily of ABC transporters. Functions in the basipetal  redirection of au"
MSGI1_8246	TC5962	26.4	7.3	4.1	4.6	-1.9	0	2.7	0	Biodegradation of Xenobiotics	"glyoxal oxidase-related  similar to glyoxal oxidase-related [Arabidopsis thaliana] (TAIR:AT1G75620.1); similar to glyoxal oxidase [Vitis pseudoreticulata] (GB:ABA42922.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contain"
MSGI1_64624	TC5964	3.4	3.8	22.2	11	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_42072	TC598	83.7	70.9	9.4	14.7	0	0	3.2	2.3	not assigned.unknown	not assigned.unknown
MSGI1_54904	TC5994	4	10.6	29.9	3.3	0	-3.2	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_63194	TC5999	27.6	0.8	17.2	5.6	-5.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_41878	TC6001	0.5	1	100.8	8.3	0	-3.6	-7.7	0	development.late embryogenesis abundant	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein  similar to jacalin lectin family protein [Arabidopsis thaliana] (TAIR:AT3G16460.2); similar to group 1 LEA protein [Sisymbrium irio] (GB:AAY26119.1); co
MSGI1_22293	TC6023	4.2	3.1	53.5	5.3	0	-3.3	-3.7	0	nucleotide metabolism.synthesis.pyrimidine.CTP synthetase	"EMB2742 (EMBRYO DEFECTIVE 2742); CTP synthase  similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT1G30820.1); similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT2"
MSGI1_24336	TC604	14	10.7	0.8	2.6	0	0	4.1	0	not assigned.unknown	not assigned.unknown
MSGI1_39004	TC6040	12.7	0.3	1.3	0.1	-5.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_5476	TC6048	15.4	0.9	0.6	0.6	-4.1	0	4.7	0	amino acid metabolism.degradation.aspartate family.methionine.methionine gamma-lyase	"ATMGL; catalytic/ methionine gamma-lyase Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methio"
MSGI1_24487	TC6063	2.1	1.6	9.1	18.4	0	0	0	-3.5	lipid metabolism.FA synthesis and FA elongation.ACP protein	"acyl carrier family protein / ACP family protein  similar to mtACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1), acyl carrier [Arabidopsis thaliana] (TAIR:AT2G44620.1); similar to Acyl carrier protein (ACP) [Medicago truncatula] (GB:ABE78017.1); contains Int"
MSGI1_24896	TC6066	2.5	1.6	17.4	4.9	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_38911	TC6068	0.3	0.1	30.3	1.9	0	-4	-6.7	0	not assigned.unknown	not assigned.unknown
MSGI1_3201	TC608	7.6	11	32.7	29.5	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_23416	TC6085	27.7	8	4.5	3.5	-1.8	0	2.6	0	cell wall.modification	"xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 32 precursor (EC 2.4.1.207) (At-XTH32) (XTH-32) (XT"
MSGI1_29550	TC6088	9.8	0.4	22.7	0.3	0	-6.2	0	0	stress.biotic	disease resistance-responsive family protein  similar to disease resistance-responsive family protein [Arabidopsis thaliana] (TAIR:AT5G42510.1); similar to At5g42500 [Oryza sativa (japonica cultivar-group)] (GB:AAX96293.1); contains InterPro domain Plant
MSGI1_1983	TC609	38	77.4	60.6	39.6	1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_50556	TC6095	22	0.2	7.3	0.3	-6.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_654	TC61	40.6	143.5	55.1	107.5	1.8	1	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL	"4CL2 (4-coumarate:CoA ligase 2); 4-coumarate-CoA ligase encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order:  p-co"
MSGI1_20921	TC6110	2.1	5.6	25.9	4	0	-2.7	-3.6	0	not assigned.unknown	not assigned.unknown
MSGI1_16589	TC6119	16.7	1.5	15.8	0.5	-3.5	-5	0	0	hormone metabolism.salicylic acid.synthesis-degradation	"S-adenosyl-L-methionine:carboxyl methyltransferase family protein The gene encodes for an enzyme that methylates benzoic acid and salicylic acid to the corresponding methyl esters. It is highly expressed in flowers, induced by biotic and abiotic stress a"
MSGI1_35113	TC6129	2.6	23.6	19.5	5.8	3.2	0	-2.9	2	not assigned.unknown	not assigned.unknown
MSGI1_10389	TC6133	31.3	16.2	46.9	18.8	0	-1.3	0	0	cell.organisation	"ATMAP70-1 (MICROTUBULE-ASSOCIATED PROTEINS 70-1); microtubule binding Encodes a microtubule associated protein (MAP70-1). Expressed in all tissues. similar to ATMAP70-2 (microtubule-associated proteins 70-2), microtubule binding [Arabidopsis thaliana] (T"
MSGI1_43388	TC6142	47.4	38.6	11.5	19.6	0	0	2	0	cell wall.degradation.pectate lyases and polygalacturonases	"PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding polygalacturonase inhibiting protein 1 (PGIP1) mRNA, Identical to Polygalacturonase inhibitor 1 precursor (Polygalacturonase-inhibiting protein) (PGIP-1) (PGIP1) [Arabidopsis Thaliana] (GB:Q"
MSGI1_35654	TC6157	5.8	25.2	10.7	8.7	2.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_1023	TC616	68.3	153.9	69.4	93.9	1.2	0	0	0	amino acid metabolism.degradation.histidine	"EMB1075 (EMBRYO DEFECTIVE 1075); carboxy-lyase  similar to GAD2 (GLUTAMATE DECARBOXYLASE 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G65960.1); similar to serine decarboxylase [Brassica napus] (GB:BAA78331.1); similar to Os02g0541300 [Oryza sa"
MSGI1_1023	TC616	68.3	153.9	69.4	93.9	1.2	0	0	0	lipid metabolism.Phospholipid synthesis	"EMB1075 (EMBRYO DEFECTIVE 1075); carboxy-lyase  similar to GAD2 (GLUTAMATE DECARBOXYLASE 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G65960.1); similar to serine decarboxylase [Brassica napus] (GB:BAA78331.1); similar to Os02g0541300 [Oryza sa"
MSGI1_46783	TC6167	4.5	3.5	90	3.4	0	-4.7	-4.3	0	hormone metabolism.abscisic acid.signal transduction	ABI2 (ABA INSENSITIVE 2); protein phosphatase type 2C Encodes a protein phosphatase 2C and is involved in ABA signal transduction. Binds fibrillin preprotein in vitro and in vivo. Identical to Protein phosphatase 2C ABI2 (EC 3.1.3.16) (PP2C) (Abscisic ac
MSGI1_35810	TC618	0.2	0.1	12.9	18.6	0	0	-6	-7.5	secondary metabolism.flavonoids.anthocyanins	glycosyltransferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT5G65550.1); similar to putative anthocyanidine rhamnosyl-transferase [Capsicum annuum] (GB:AAM12787.1); contains InterPr
MSGI1_7621	TC6187	14.1	0	2.6	0.2	-4.8	0	0	0	RNA.regulation of transcription.bZIP transcription factor family	bZIP transcription factor family protein  similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G42380.2); similar to bZIP transcription factor bZIP50 [Glycine max] (GB:ABI34644.1); contains InterPro domain Eukaryotic transc
MSGI1_2258	TC619	17.3	26	55.2	70.5	0	0	-1.7	-1.4	secondary metabolism.flavonoids.anthocyanins	glycosyltransferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT5G65550.1); similar to putative anthocyanidine rhamnosyl-transferase [Capsicum annuum] (GB:AAM12787.1); contains InterPr
MSGI1_12918	TC62	147.1	82.5	53	122.8	0	1.2	1.5	0	stress.abiotic.heat	HSP70 (heat shock protein 70); ATP binding  similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G
MSGI1_365	TC620	8.6	84.4	38.1	89.8	3.3	1.2	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_36502	TC621	1.3	25.9	2.7	13.4	4.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_341	TC622	189.2	108.9	313.1	34.9	0	-3.2	0	1.6	cell wall	"BXL1 (BETA-XYLOSIDASE 1); hydrolase, hydrolyzing O-glycosyl compounds encodes a beta-xylosidase located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase fa"
MSGI1_6098	TC6220	6.2	3.8	61.7	4.1	0	-3.9	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_5763	TC6221	0.3	0.4	13	22.1	0	0	-5.4	-5.8	stress.abiotic.light	DDB1A (UV-damaged DNA-binding protein 1A); DNA binding Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chro
MSGI1_5763	TC6221	0.3	0.4	13	22.1	0	0	-5.4	-5.8	protein.degradation.ubiquitin.E3.DCX	DDB1A (UV-damaged DNA-binding protein 1A); DNA binding Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chro
MSGI1_13677	TC6232	13.3	1.1	4.9	0.3	-3.6	0	0	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY51 (WRKY DNA-binding protein 51); transcription factor member of WRKY Transcription Factor; Group II-c Identical to Probable WRKY transcription factor 51 (WRKY DNA-binding protein 51) (WRKY51) [Arabidopsis Thaliana] (GB:Q93WU9;GB:Q9LV96); similar to
MSGI1_26424	TC6235	18	2.1	4.2	2.3	-3.1	0	0	0	protein.degradation.aspartate protease	"aspartyl protease family protein  similar to chloroplast nucleoid DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G10770.1); similar to Os09g0423500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063212.1); similar to 41 kD chloroplast"
MSGI1_10644	TC6266	31	12.2	5.6	4.3	0	0	2.5	0	secondary metabolism.flavonoids.chalcones	TT5 (TRANSPARENT TESTA 5); chalcone isomerase Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems. Identical to Chalcone--flavonone isomerase (EC 5.5.1.6) (Chalcone isomerase) (TR
MSGI1_24986	TC6283	2.1	3.4	18.6	3.3	0	-2.5	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_16999	TC6290	49.9	3.4	14.4	2.7	-3.9	0	1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_43182	TC6291	0	0	12.8	0.9	0	-3.8	-4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_118060	TC6293	11.5	0.2	2.4	0.4	-5.8	0	0	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G29660.1); similar to GDSL-lipase 1 [Capsicum annuum] (GB:AAZ23955.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; ("
MSGI1_16951	TC63	2.4	3.7	55.2	52.6	0	0	-4.5	-3.8	protein.degradation.subtilases	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_16951	TC63	2.4	3.7	55.2	52.6	0	0	-4.5	-3.8	cell wall	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_47588	TC6308	0.2	0.3	14.2	9	0	0	-6.1	0	not assigned.unknown	not assigned.unknown
MSGI1_86	TC631	24.4	35.5	64.6	33.1	0	0	-1.4	0	protein.postranslational modification	kinase interacting family protein  similar to kinase interacting family protein [Arabidopsis thaliana] (TAIR:AT3G22790.1); similar to M protein repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G14760.1); similar to kinase interacting family prot
MSGI1_5332	TC635	289.9	70.5	195.2	186.6	-2	0	0	-1.4	cell.cycle.peptidylprolyl isomerase	"ROC4 (rotamase CyP 4); peptidyl-prolyl cis-trans isomerase nuclear-encoded chloroplast stromal cyclophilin (ROC4) Identical to Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplast precursor (EC 5.2.1.8) (PPIase CYP20-3) (Rotamase cyclophilin-4) (Cycl"
MSGI1_36924	TC6368	0	0	15.4	13.5	0	0	-4.9	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_2393	TC637	19	33.6	76.6	40.2	0	0	-2	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	"KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3); transcription factor A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-"
MSGI1_41877	TC6370	45.2	20.6	19.4	16.8	0	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_3933	TC6377	7.9	0.2	35.4	0.1	0	-8.5	-2.2	0	secondary metabolism.wax	"CER1 (ECERIFERUM 1) Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also l"
MSGI1_118057	TC6378	0	0	13.5	15.5	0	0	-4.8	-5	RNA.processing	"PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor polyadenylate-binding protein, putative / PABP, putative.Member of the Class II family of PABP proteins. Highly and ubiquitously expressed. similar to PAB8 (POLY(A) BINDING PRO"
MSGI1_47170	TC6381	14.7	0.3	2.6	0.2	-5.6	0	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	auxin-responsive family protein  similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G34810.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12778.1); contains InterPro domain Auxin responsive SAUR protein; (I
MSGI1_118055	TC6398	30.5	24.1	4.7	11	0	0	2.7	0	protein.targeting.nucleus	"NTF2A (NUCLEAR TRANSPORT FACTOR 2A); Ran GTPase binding / protein transporter Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transp"
MSGI1_26045	TC6408	1.6	0.5	15	4.4	0	0	-3.2	0	"RNA.regulation of transcription.SBP,Squamosa promoter binding protein family"	"SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding / transcription factor Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors.  Co"
MSGI1_26045	TC6408	1.6	0.5	15	4.4	0	0	-3.2	0	development.unspecified	"SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding / transcription factor Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors.  Co"
MSGI1_1639	TC641	26.9	17.6	54.3	22	0	-1.3	0	0	misc.cytochrome P450	"CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15); oxygen binding putative cytochrome P450 similar to CYP72A14 (cytochrome P450, family 72, subfamily A, polypeptide 14), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14680.1); similar t"
MSGI1_13181	TC642	8.1	14.9	38	25.6	0	0	-2.2	0	misc.cytochrome P450	"CYP72A14 (cytochrome P450, family 72, subfamily A, polypeptide 14); oxygen binding putative cytochrome P450 similar to CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14690.1); similar t"
MSGI1_19927	TC644	11.5	15.3	53.6	30.7	0	0	-2.2	0	misc.cytochrome P450	"CYP72A7 (cytochrome P450, family 72, subfamily A, polypeptide 7); oxygen binding putative cytochrome P450 similar to CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14690.1); similar to"
MSGI1_21939	TC6444	0.5	0.5	35.7	0	0	-6.2	-6.2	0	not assigned.unknown	not assigned.unknown
MSGI1_51974	TC6447	55.2	75.1	0.5	0.2	0	0	6.8	8.6	not assigned.unknown	not assigned.unknown
MSGI1_66497	TC6449	10.4	46.6	85.6	32.3	2.2	-1.4	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_85719	TC6458	6	29.7	15.1	4	2.3	0	0	2.9	not assigned.unknown	not assigned.unknown
MSGI1_5244	TC646	162.2	85.4	278.5	75.5	0	-1.9	0	0	secondary metabolism.phenylpropanoids	"pinoresinol-lariciresinol reductase, putative encodes a protein whose sequence is similar to pinoresinol-lariciresinol reductase from pine. similar to pinoresinol-lariciresinol reductase, putative [Arabidopsis thaliana] (TAIR:AT4G13660.1); similar to Iso"
MSGI1_23642	TC6460	2.1	0.9	209.5	4.5	0	-5.5	-6.6	0	amino acid metabolism.synthesis.glutamate family.proline.delta 1-pyrroline-5-carboxylate synthetase	"P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2); catalytic/ glutamate 5-kinase/ glutamate-5-semialdehyde dehydrogenase encodes delta 1-pyrroline-5-carboxylate synthetase B. Gene expression is induced by dehydration, high salt and ABA. Identical to Del"
MSGI1_44178	TC6486	10.2	10.4	24.2	6	0	-2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_50082	TC65	0	0	39.9	62.3	0	0	-6.3	-7	cell wall	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_50082	TC65	0	0	39.9	62.3	0	0	-6.3	-7	protein.degradation.subtilases	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_33772	TC6514	5.8	5.4	29.7	5.2	0	-2.5	-2.4	0	amino acid metabolism.degradation.branched-chain group.leucine	"MCCA (3-methylcrotonyl-CoA carboxylase 1) MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. Identical to Methylcrotonoyl-"
MSGI1_23735	TC6531	3	19.4	6.3	40	2.7	2.7	0	0	transport.phosphate	PHO1 (PHOSPHATE 1) mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains. Identical
MSGI1_32944	TC6541	6	6.2	27.7	14	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_54655	TC6545	2.9	6.2	24.8	3.8	0	-2.7	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_707	TC657	185.6	198.8	245.6	479.6	0	1	0	-1.3	major CHO metabolism.synthesis.starch.starch synthase	"starch synthase, putative  Identical to Probable granule-bound starch synthase 1, chloroplast precursor (EC 2.4.1.242) (Granule-bound starch synthase I) (GBSS-I) (WAXY) [Arabidopsis Thaliana] (GB:Q9MAQ0); similar to glycogen synthase, putative [Arabidops"
MSGI1_6190	TC658	113.8	56.5	92.8	108.7	-1	0	0	0	PS.photorespiration.phosphoglycolate phosphatase	"phosphoglycolate phosphatase, putative  similar to phosphoglycolate phosphatase, putative [Arabidopsis thaliana] (TAIR:AT5G36700.1); similar to HAD-superfamily hydrolase, subfamily IIA [Medicago truncatula] (GB:ABE78003.1); similar to OSIGBa0130B08.3 [Or"
MSGI1_25573	TC6583	0.7	0.9	10.9	25.3	0	0	0	-4.8	not assigned.unknown	not assigned.unknown
MSGI1_45255	TC6589	42.3	17.9	11.8	22.1	0	0	1.8	0	RNA.regulation of transcription.TCP transcription factor family	"TCP family transcription factor, putative  similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT5G08330.1); similar to unknown [Brassica rapa] (GB:ABB97033.1); contains InterPro domain TCP transcription factor; (InterPro:IP"
MSGI1_26565	TC659	78.2	40.2	70.2	84.7	0	0	0	-1.1	PS.photorespiration.phosphoglycolate phosphatase	"phosphoglycolate phosphatase, putative  similar to phosphoglycolate phosphatase, putative [Arabidopsis thaliana] (TAIR:AT5G36700.1); similar to HAD-superfamily hydrolase, subfamily IIA [Medicago truncatula] (GB:ABE78003.1); similar to OSIGBa0130B08.3 [Or"
MSGI1_32602	TC6594	3	2.7	48.6	19.6	0	-1.3	-4	-2.9	not assigned.unknown	not assigned.unknown
MSGI1_46152	TC6640	6.4	11	0.1	0.3	0	0	0	5.2	not assigned.unknown	not assigned.unknown
MSGI1_53307	TC6649	2	4	18.9	12.3	0	0	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_9084	TC665	23.6	23.2	41.8	13.4	0	-1.6	0	0	secondary metabolism.wax	"very-long-chain fatty acid condensing enzyme, putative  Identical to Probable 3-ketoacyl-CoA synthase 4 (EC 2.3.1.-) (KCS-4) (Very-long- chain fatty acid condensing enzyme 4) (VLCFA condensing enzyme 4) (KCS4) [Arabidopsis Thaliana] (GB:Q9LN49); similar"
MSGI1_20980	TC6650	7.7	12	0	0	0	0	0	4.6	not assigned.unknown	not assigned.unknown
MSGI1_54654	TC6652	9.5	18.6	37.3	9.4	0	-2	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_40050	TC6656	13.1	9.7	0.5	0.8	0	0	4.7	0	not assigned.unknown	not assigned.unknown
MSGI1_61447	TC6661	24.6	25	73.1	64.8	0	0	-1.6	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_2900	TC667	143.1	9.3	74.6	8.4	-3.9	-3.2	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_2900	TC667	143.1	9.3	74.6	8.4	-3.9	-3.2	0	0	cell wall	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT5G22810.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE90349.1); contains InterPro domain Lipolytic enzyme, G-D-S-L;"
MSGI1_2900	TC667	143.1	9.3	74.6	8.4	-3.9	-3.2	0	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT5G22810.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE90349.1); contains InterPro domain Lipolytic enzyme, G-D-S-L;"
MSGI1_23691	TC6671	25.2	1.5	16.5	2.5	-4.1	-2.7	0	0	lipid metabolism.FA synthesis and FA elongation.beta ketoacyl CoA synthase	beta-ketoacyl-CoA synthase family protein  Identical to 3-ketoacyl-CoA synthase 3 (EC 2.3.1.-) (KCS-3) (Very-long-chain fatty acid condensing enzyme 3) (VLCFA condensing enzyme 3) (KCS3) [Arabidopsis Thaliana] (GB:Q9LQP8); similar to beta-ketoacyl-CoA sy
MSGI1_3706	TC668	39.9	35.5	86.5	18.1	0	-2.3	-1.1	0	cell wall	ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding. Identical to NAC domain-containing protein 2 (
MSGI1_3706	TC668	39.9	35.5	86.5	18.1	0	-2.3	-1.1	0	RNA.regulation of transcription.NAC domain transcription factor family	ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding. Identical to NAC domain-containing protein 2 (
MSGI1_3706	TC668	39.9	35.5	86.5	18.1	0	-2.3	-1.1	0	development.unspecified	ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding. Identical to NAC domain-containing protein 2 (
MSGI1_3706	TC668	39.9	35.5	86.5	18.1	0	-2.3	-1.1	0	cell wall	ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding. Identical to NAC domain-containing protein 2 (
MSGI1_37086	TC6682	0	0	27.6	44.5	0	0	-5.8	-6.5	not assigned.unknown	not assigned.unknown
MSGI1_2944	TC669	19.3	15.7	46.3	8.9	0	-2.4	0	0	cell wall	ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding. Identical to NAC domain-containing protein 2 (
MSGI1_2944	TC669	19.3	15.7	46.3	8.9	0	-2.4	0	0	RNA.regulation of transcription.NAC domain transcription factor family	ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding. Identical to NAC domain-containing protein 2 (
MSGI1_2944	TC669	19.3	15.7	46.3	8.9	0	-2.4	0	0	cell wall	ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding. Identical to NAC domain-containing protein 2 (
MSGI1_2944	TC669	19.3	15.7	46.3	8.9	0	-2.4	0	0	development.unspecified	ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding. Identical to NAC domain-containing protein 2 (
MSGI1_74001	TC6690	0	0	23.1	54.9	0	1.2	-5.5	-6.8	not assigned.unknown	not assigned.unknown
MSGI1_113014	TC67	219.8	227.5	0	0	0	0	8.8	8.8	not assigned.unknown	not assigned.unknown
MSGI1_1865	TC670	54.1	77.2	157.9	41.5	0	-1.9	-1.5	0	protein.postranslational modification	AHG3/ATPP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA); protein binding / protein phosphatase type 2C Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA.
MSGI1_61445	TC6702	8.8	3.5	60.4	18	0	-1.7	-2.8	0	stress.biotic	"pathogenesis-related thaumatin family protein  similar to ATLP-1 (Arabidopsis thaumatin-like protein 1) [Arabidopsis thaliana] (TAIR:AT1G18250.1); similar to Thaumatin, pathogenesis-related [Medicago truncatula] (GB:ABE78554.1); contains InterPro domain"
MSGI1_61445	TC6702	8.8	3.5	60.4	18	0	-1.7	-2.8	0	cell wall	"pathogenesis-related thaumatin family protein  similar to ATLP-1 (Arabidopsis thaumatin-like protein 1) [Arabidopsis thaliana] (TAIR:AT1G18250.1); similar to Thaumatin, pathogenesis-related [Medicago truncatula] (GB:ABE78554.1); contains InterPro domain"
MSGI1_32033	TC6707	19.5	9.8	14.2	30.3	0	0	0	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_18951	TC671	186.2	1198	388	1230.2	2.7	1.7	-1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_11443	TC6711	31.3	34.9	0.6	0.3	0	0	5.7	6.9	transport.metabolite transporters at the mitochondrial membrane	dicarboxylate/tricarboxylate carrier (DTC)  similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT2G22500.1); similar to Mitochondrial carrier protein [Medicago truncatula] (GB:ABE79078.1); similar to oxoglutarate malate
MSGI1_25205	TC672	105.8	370	200.4	348.6	1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_17207	TC673	75.6	238.8	100.5	96.5	1.7	0	0	1.3	not assigned.unknown	not assigned.unknown
MSGI1_70723	TC6766	14.4	1.2	28.2	2.5	-3.6	-3.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_40416	TC6772	6.8	10.3	0.3	0.1	0	0	0	6.7	not assigned.unknown	not assigned.unknown
MSGI1_5884	TC6783	12.3	41.9	30.5	5.9	1.8	-2.4	0	2.8	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G46620.1); similar to Zinc finger, RING-type; Thioredoxin-related; RINGv [Medicago truncatula] (GB:ABE8198"
MSGI1_32701	TC68	0	0.1	158.1	158.8	0	0	-8.3	-10.6	not assigned.unknown	not assigned.unknown
MSGI1_24656	TC6835	12.5	42	13.6	10.8	1.7	0	0	2	not assigned.unknown	not assigned.unknown
MSGI1_44003	TC6837	14	9	0.6	3.9	0	0	4.5	0	not assigned.unknown	not assigned.unknown
MSGI1_13764	TC6842	3.5	31.4	19.7	18.6	3.2	0	-2.5	0	"metal handling.binding, chelation and storage"	"nicotianamine synthase, putative  Identical to Nicotianamine synthase 2 (EC 2.5.1.43) (S-adenosyl-L-methionine:S- adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3- carboxypropyltransferase 2) (AtNAS2) (NAS2) [Arabidopsis Thaliana] (GB:Q9FKT9;GB:Q9ZW"
MSGI1_48490	TC6850	98.6	44.6	46.9	53.5	-1.1	0	1.1	0	mitochondrial electron transport / ATP synthesis.cytochrome c oxidase	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G02510.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15588.1)
MSGI1_47815	TC6854	16.2	31.4	1.7	1.4	0	0	3.3	4.5	hormone metabolism.cytokinin.signal transduction	WOL (CYTOKININ RESPONSE 1) Histidine kinase: cytokinin-binding receptor that transduces cytokinin signals across the plasma membrane similar to AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) [Arabidopsis thaliana] (TAIR:AT1G27320.1); similar to AHK2 (ARABIDOPSIS
MSGI1_37371	TC6857	2	8.5	3.3	28.6	0	3.1	0	-1.8	hormone metabolism.gibberelin.synthesis-degradation.ent-kaurenoic acid hydroxylase/oxygenase	KAO2 (ENT-KAURENOIC ACID HYDROXYLASE 2); oxygen binding ent-kaurenoic acid hydroxylase (KAO2) Identical to Ent-kaurenoic acid oxidase 2 (EC 1.14.13.79) (AtKAO2) (Cytochrome P450 88A4) (KAO2) [Arabidopsis Thaliana] (GB:Q9C5Y2;GB:Q9ZV72); similar to CYP88A
MSGI1_18353	TC6859	1.1	5.6	56.4	14.2	0	-2	-5.7	0	not assigned.unknown	not assigned.unknown
MSGI1_9116	TC687	12.2	27.1	73	15.8	0	-2.2	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_29732	TC6876	1.2	2.5	15.9	13.4	0	0	-3.7	0	not assigned.unknown	not assigned.unknown
MSGI1_2129	TC688	18.6	42.6	141.5	40	0	-1.8	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_16685	TC6880	22	8.7	3.8	6.2	0	0	2.5	0	nucleotide metabolism.salvage.nucleoside kinases.thymidine kinase	"thymidine kinase, putative  similar to thymidine kinase, putative [Arabidopsis thaliana] (TAIR:AT5G23070.1); similar to TK1-like deoxyribonucleoside kinase [Lycopersicon esculentum] (GB:AAQ08180.1); contains InterPro domain Thymidine kinase; (InterPro:IP"
MSGI1_27613	TC6888	3.8	5.3	28.3	11.5	0	0	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_10621	TC6894	5.9	23.7	5.2	8.7	2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_37085	TC6896	2.1	2.5	12.9	19	0	0	0	-2.9	not assigned.unknown	not assigned.unknown
MSGI1_41287	TC69	50.2	25.4	44.7	58.1	0	0	0	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_31092	TC6902	12.6	46.7	28.7	43.4	1.9	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_41873	TC6907	1.3	0.7	30.1	0.1	0	-8.2	-4.5	0	misc.UDP glucosyl and glucoronyl transferases	"UGT73C2 (UDP-glucosyl transferase 73C2); UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G3"
MSGI1_51515	TC691	2.6	2.3	24.3	31.9	0	0	-3.2	-3.8	glycolysis.pyrophosphate-fructose-6-P phosphotransferase	"pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative  similar to MEE51 (maternal effect embryo arrest 51), diphosphate-fructose-6-phosphate 1-phosphotransferase [Ar"
MSGI1_20165	TC6913	14.6	20.4	0.2	0	0	0	6.2	5.4	protein.folding	HSC70-1 (heat shock cognate 70 kDa protein 1); ATP binding encodes a member of heat shock protein 70 family. Identical to Heat shock cognate 70 kDa protein 1 (Hsc70.1) (HSC70-1) [Arabidopsis Thaliana] (GB:P22953;GB:Q9LZ52); similar to HSP70 (heat shock p
MSGI1_8285	TC6920	4.9	12.1	0.9	0.8	0	0	0	3.9	not assigned.unknown	not assigned.unknown
MSGI1_4412	TC6924	24	24.8	3.6	2.9	0	0	2.7	3.1	not assigned.unknown	not assigned.unknown
MSGI1_498	TC693	18.1	48.7	52.9	34.2	1.4	0	-1.5	0	transport.ABC transporters and multidrug resistance systems	ABC transporter family protein  Identical to White-brown complex homolog protein 14 (WBC14) [Arabidopsis Thaliana] (GB:Q9C6W5;GB:Q9C6R7); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT4G27420.1); similar to ABC transporter-like
MSGI1_9782	TC6932	156	184.9	0.2	0.1	0	0	9.6	10.9	not assigned.unknown	not assigned.unknown
MSGI1_5060	TC6933	0.1	0.2	71	143.4	0	1	-9.5	-9.5	not assigned.unknown	not assigned.unknown
MSGI1_13939	TC6935	89	40.5	0.1	0	-1.1	0	9.8	6.3	not assigned.unknown	not assigned.unknown
MSGI1_20251	TC6938	21.6	18.1	71.6	5.3	0	-3.8	-1.7	0	stress.abiotic.heat	AT-HSFC1 (Arabidopsis thaliana heat shock transcription factor C1); DNA binding / transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor C-1 (AtHsfC1) (HSFC1) [Arabidopsis Thaliana] (GB:
MSGI1_20251	TC6938	21.6	18.1	71.6	5.3	0	-3.8	-1.7	0	"RNA.regulation of transcription.HSF,Heat-shock transcription factor family"	AT-HSFC1 (Arabidopsis thaliana heat shock transcription factor C1); DNA binding / transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor C-1 (AtHsfC1) (HSFC1) [Arabidopsis Thaliana] (GB:
MSGI1_15216	TC6940	30.5	50	30.2	60.9	0	1	0	0	misc.rhodanese	CDC25 Encodes a homolog of yeast cell cycle regulator CDC25.  It has a sole catalytic domain and devoid of the N-terminal regulatory region found in the human CDC25 and is capable of reducing the mitotic cell length of transformed fission yeast.  Non-pla
MSGI1_39913	TC6948	11.6	11.1	0	0	0	0	4.5	4.5	not assigned.unknown	not assigned.unknown
MSGI1_29362	TC6952	16.2	7.9	45.3	6	0	-2.9	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_25571	TC6953	8.1	8.6	20.7	3.4	0	-2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_21874	TC6961	118.7	86.2	60	93.9	0	0	1	0	RNA.regulation of transcription.General Transcription	"nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative  similar to nascent polypeptide-associated complex (NAC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G73230.1); similar to tr"
MSGI1_19730	TC6964	0.8	24.3	2	17	4.9	3.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_15500	TC6969	3.4	8.7	20.7	4.3	0	-2.3	-2.6	0	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	"APK2B (PROTEIN KINASE 2B); kinase Encodes protein kinase APK2b. similar to APK2A (PROTEIN KINASE 2A), kinase [Arabidopsis thaliana] (TAIR:AT1G14370.1); similar to putative protein kinase [Solanum demissum] (GB:AAT40481.1); contains InterPro domain Protei"
MSGI1_15500	TC6969	3.4	8.7	20.7	4.3	0	-2.3	-2.6	0	cell wall	"APK2B (PROTEIN KINASE 2B); kinase Encodes protein kinase APK2b. similar to APK2A (PROTEIN KINASE 2A), kinase [Arabidopsis thaliana] (TAIR:AT1G14370.1); similar to putative protein kinase [Solanum demissum] (GB:AAT40481.1); contains InterPro domain Protei"
MSGI1_1606	TC697	463.9	271.7	253	584.2	0	1.2	0	-1.1	PS.calvin cyle.GAP	"GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase Encodes chloroplast localized glyceraldehyde-3-phosphate dehydrogenase. Identical to Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor (EC"
MSGI1_39205	TC6976	14.1	12.3	1.9	0.8	0	0	0	3.9	not assigned.unknown	not assigned.unknown
MSGI1_7706	TC699	85.2	13.7	23.5	23	-2.6	0	1.9	0	"misc.gluco-, galacto- and mannosidases"	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_7706	TC699	85.2	13.7	23.5	23	-2.6	0	1.9	0	major CHO metabolism.degradation.starch.starch cleavage	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_64622	TC6991	3	8.3	19.1	6.5	0	0	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_54653	TC6998	4.2	5.3	26	4	0	-2.7	-2.6	0	cell wall	leucine-rich repeat family protein  similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G15320.1); similar to Os02g0647300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047577.1); similar to Hcr2-p3 [Lycopersicon pimpinelli
MSGI1_4337	TC700	124.8	20.1	51.7	36.4	-2.6	0	1.3	0	major CHO metabolism.degradation.starch.starch cleavage	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_4337	TC700	124.8	20.1	51.7	36.4	-2.6	0	1.3	0	"misc.gluco-, galacto- and mannosidases"	"ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases."
MSGI1_21737	TC7032	1.9	20.8	27.6	8.5	3.5	0	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_50304	TC7035	7.6	15.8	0	0	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_5518	TC705	396.7	195.9	126.5	213.3	-1	0	1.6	0	transport.unspecified cations	"AAC2 (ADP/ATP CARRIER 2); ATP:ADP antiporter/ binding Encodes mitochondrial ADP/ATP carrier Identical to ADP,ATP carrier protein 2, mitochondrial precursor (ADP/ATP translocase 2) (Adenine nucleotide translocator 2) (ANT 2) (ANT2) [Arabidopsis Thaliana]"
MSGI1_21212	TC7057	5.1	7.2	27.1	3.8	0	-2.8	-2.4	0	misc.cytochrome P450	"CYP707A3 (cytochrome P450, family 707, subfamily A, polypeptide 3); oxygen binding Encodes a protein with ABA 8'-hydroxylase activity; involved in ABA catabolism. Mutant analyses show that disruption in the gene results in more drought tolerance whereas"
MSGI1_12274	TC706	397.5	199.8	139.2	207.8	0	0	1.5	0	transport.metabolite transporters at the envelope membrane	"AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding mitochondrial ADP/ATP carrier Identical to ADP,ATP carrier protein 1, mitochondrial precursor (ADP/ATP translocase 1) (Adenine nucleotide translocator 1) (ANT 1) (ANT1) [Arabidopsis Thaliana] (GB:P311"
MSGI1_12274	TC706	397.5	199.8	139.2	207.8	0	0	1.5	0	major CHO metabolism.synthesis.starch.transporter	"AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding mitochondrial ADP/ATP carrier Identical to ADP,ATP carrier protein 1, mitochondrial precursor (ADP/ATP translocase 1) (Adenine nucleotide translocator 1) (ANT 1) (ANT1) [Arabidopsis Thaliana] (GB:P311"
MSGI1_35245	TC7084	3.1	4	13.8	22.4	0	0	0	-2.5	fermentation.aldehyde dehydrogenase	"ALDH3I1 (Aldehyde dehydrogenase 3I1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) Aldehyde dehydrogenase induced by ABA and dehydration Identical to Aldehyde dehydrogenase 3I1, chloroplast precursor (EC 1.2.1.3) (AtALDH3) (ALDH3I1)"
MSGI1_28169	TC7089	12.7	36.7	21	18.3	1.5	0	0	0	transport.sulphate	AST56 (sulphate transporter 2;2); sulfate transporter cDNA encoding a sulfate transporter. Identical to Sulfate transporter 2.2 (AST56) (AtH14) (SULTR2;2) [Arabidopsis Thaliana] (GB:P92946;GB:O64434;GB:Q8LPG2;GB:Q8VXW4;GB:Q9SH01); similar to AST68 (Sulfat
MSGI1_28169	TC7089	12.7	36.7	21	18.3	1.5	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_33986	TC7099	4.4	3.8	25.1	3.5	0	-2.8	-2.5	0	cell.organisation	"AKRP/EMB2036 (EMBRYO DEFECTIVE 2036); protein binding  Identical to Ankyrin repeat protein, chloroplast precursor (AKRP) (AKR) [Arabidopsis Thaliana] (GB:Q05753;GB:Q8GYN6;GB:Q940Y0); similar to EMB506 (EMBRYO DEFECTIVE 506), protein binding [Arabidopsis"
MSGI1_10730	TC71	83.9	68.3	25.8	24.2	0	0	1.7	1.5	stress.abiotic.heat	ERD2/HSP70T-1 (EARLY-RESPONSIVE TO DEHYDRATION 2); ATP binding encodes a heat shock protein whose gene expression is induced by heat and dehydration. similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G0944
MSGI1_52249	TC7103	10.2	20	36.6	18.7	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_2360	TC713	42.3	77.7	103.9	79.7	0	0	-1.3	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	RAP2.4 (related to AP2 4); DNA binding / transcription factor encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. There are 8 members in this subfamily. similar to AP2 domain-co
MSGI1_57020	TC7135	13.3	1.1	2.3	0.7	-3.6	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_32372	TC714	14.1	24.6	0.2	0.1	0	0	6.1	7.9	not assigned.unknown	not assigned.unknown
MSGI1_87732	TC7145	1.4	3	12.7	0.5	0	-4.7	0	0	not assigned.unknown	not assigned.unknown
MSGI1_16136	TC715	495.7	696.2	442.2	884.9	0	1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_68162	TC7157	9.5	2.8	72	0.4	0	-7.5	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_48061	TC716	89.2	129.4	241	957.3	0	2	-1.4	-2.9	not assigned.unknown	not assigned.unknown
MSGI1_87085	TC7161	3	8.9	15.7	1.7	0	-3.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_17922	TC7172	0.5	0.9	19	27.4	0	0	-5.2	-4.9	transport.ABC transporters and multidrug resistance systems	ATMRP6 (Arabidopsis thaliana multidrug resistance-associated protein 6) member of MRP subfamily Identical to Multidrug resistance-associated protein 6 precursor (EC 3.6.3.44) (Glutathione S-conjugate-transporting ATPase 6) (ATP-energized glutathione S-co
MSGI1_73544	TC7180	0	0	8.3	12	0	0	0	-4.6	not assigned.unknown	not assigned.unknown
MSGI1_55127	TC7181	0.2	0.6	28.5	12.8	0	0	-7.2	-4.4	not assigned.unknown	not assigned.unknown
MSGI1_57943	TC7198	84.9	46.8	35.2	38.9	0	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_1693	TC72	130.8	93.7	131.1	188.9	0	0	0	-1	protein.degradation.subtilases	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_1693	TC72	130.8	93.7	131.1	188.9	0	0	0	-1	cell wall	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_22890	TC7206	6.9	6.1	2.7	17.2	0	2.7	0	0	stress.biotic	disease resistance-responsive family protein  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22900.1); similar to dirigent-like protein pDIR9 [Picea engelmannii x Picea glauca] (GB:ABD52120.1); contains InterPro domain Plant disease resistanc
MSGI1_16998	TC722	250.7	266.9	95.5	131.7	0	0	1.4	1	not assigned.unknown	not assigned.unknown
MSGI1_92671	TC7225	4.5	21.3	17.5	31.1	2.2	0	0	0	cell wall	"hydrolase, hydrolyzing O-glycosyl compounds  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT4G27820.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT4G27830.1); similar to glycosyl hydrolase"
MSGI1_117167	TC723	166.2	185	69.7	101.7	0	0	1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_80820	TC7230	1.2	0.8	11.9	12.5	0	0	0	-4	not assigned.unknown	not assigned.unknown
MSGI1_5611	TC7232	9.5	13.3	0	0	0	0	0	4.7	RNA.regulation of transcription.unclassified	"zinc finger protein, putative  similar to zinc finger protein, putative [Arabidopsis thaliana] (TAIR:AT3G24680.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1)"
MSGI1_11733	TC724	101	105.7	51.9	63.6	0	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_22524	TC7249	5.1	5.3	33.7	1.6	0	-4.4	-2.7	0	signalling.calcium	calcium-binding EF hand family protein  similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT3G29000.1); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE80363.1); contains InterPro domain EF-Hand type; (InterPro
MSGI1_4505	TC726	87.4	32.4	32.2	45.4	-1.4	0	1.4	0	RNA.processing	"FIB2 (FIBRILLARIN 2) encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fif"
MSGI1_4694	TC727	48.5	39.1	20.8	48.4	0	1.2	1.2	0	RNA.processing	"FIB2 (FIBRILLARIN 2) encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fif"
MSGI1_93415	TC7275	0	0	11.1	18.1	0	0	0	-5.2	not assigned.unknown	not assigned.unknown
MSGI1_3897	TC73	76	47.5	150.2	190.7	0	0	0	-2	cell wall	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_3897	TC73	76	47.5	150.2	190.7	0	0	0	-2	protein.degradation.subtilases	AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
MSGI1_8364	TC730	170.7	92.8	64.3	104.1	0	0	1.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L6 (RPL6B)  Identical to 60S ribosomal protein L6-3 (RPL6C) [Arabidopsis Thaliana] (GB:Q9C9C5); Identical to 60S ribosomal protein L6-2 (RPL6B) [Arabidopsis Thaliana] (GB:Q9C9C6); similar to 60S ribosomal protein L6 (RPL6C) [Arabido
MSGI1_30987	TC7305	23.6	0.2	0.1	0	-6.9	0	7.9	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to ATLTL1/LTL1 (LI-TOLERANT LIPASE 1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT3G04290.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipo"
MSGI1_30987	TC7305	23.6	0.2	0.1	0	-6.9	0	7.9	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_30849	TC731	45.1	25.9	12.3	33.9	0	1.5	1.9	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L6 (RPL6A)  Identical to 60S ribosomal protein L6-1 (RPL6A) [Arabidopsis Thaliana] (GB:Q9FZ76); similar to 60S ribosomal protein L6 (RPL6C) [Arabidopsis thaliana] (TAIR:AT1G74050.1); similar to 60S ribosomal protein L6 (YL16-like) (
MSGI1_1899	TC732	656.7	6.4	332.3	4.5	-6.7	-6.2	1	0	cell wall	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25460.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain Protein of unknown function DUF642
MSGI1_29286	TC7322	160.6	78.4	55.6	39.2	-1	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_22365	TC7329	6.5	7	28.6	17.6	0	0	-2.1	0	glycolysis.PEPCase	ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1); phosphoenolpyruvate carboxylase Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. Identical to Phosphoenolpyruvate carboxylase 1 (EC 4.1.1.31) (PEPCase 1) (PEPC 1) (AtPPC1) (PPC1) [Arabi
MSGI1_1350	TC733	75.1	68.9	37.6	29.8	0	0	1	1.2	secondary metabolism.simple phenols	"LAC5 (laccase 5); copper ion binding / oxidoreductase putative laccase, a member of laccase family of genes (17 members in Arabidopsis). similar to LAC3 (laccase 3), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G30210.1); similar t"
MSGI1_1350	TC733	75.1	68.9	37.6	29.8	0	0	1	1.2	cell wall	"LAC5 (laccase 5); copper ion binding / oxidoreductase putative laccase, a member of laccase family of genes (17 members in Arabidopsis). similar to LAC3 (laccase 3), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G30210.1); similar t"
MSGI1_6469	TC734	36.8	30.5	8.6	16.2	0	0	2.1	0	cell wall	"LAC12 (laccase 12); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to LAC3 (laccase 3), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G30210.1); simila"
MSGI1_6469	TC734	36.8	30.5	8.6	16.2	0	0	2.1	0	secondary metabolism.simple phenols	"LAC12 (laccase 12); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to LAC3 (laccase 3), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G30210.1); simila"
MSGI1_50554	TC7365	3.6	25.3	15.3	34	2.8	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_50554	TC7365	3.6	25.3	15.3	34	2.8	0	0	0	hormone metabolism.ethylene.synthesis-degradation	"2-oxoglutarate-dependent dioxygenase, putative encodes a protein similar to a 2-oxoglutarate-dependent dioxygenase similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G04350.1); similar to unknown [Prunus armeniaca]"
MSGI1_11873	TC7376	1	0.8	210.6	0.9	0	-7.9	-7.7	0	amino acid metabolism.synthesis.branched chain group.common	"ATBCAT-2; branched-chain-amino-acid transaminase/ catalytic Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. Identical to Branched-chain-amino-acid aminotransferase 2, chloroplast"
MSGI1_107005	TC7379	0	0.6	2.1	240.9	0	6.8	0	-8.6	not assigned.unknown	not assigned.unknown
MSGI1_79063	TC7381	1.5	2	14.8	4.9	0	0	-3.3	0	misc.cytochrome P450	"CYP71B34 (cytochrome P450, family 71, subfamily B, polypeptide 34); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B34 (EC 1.14.-.-) (CYP71B34) [Arabidopsis Thaliana] (GB:Q9LIP6); similar to CYP71B35 (cytochrome P450, family 71, s"
MSGI1_89754	TC7402	6.9	9.1	30.3	16.2	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_4766	TC742	20.8	75.9	17.7	87.4	1.9	2.3	0	0	misc.cytochrome P450	"CYP76C2 (cytochrome P450, family 76, subfamily C, polypeptide 2); oxygen binding member of CYP76C Identical to Cytochrome P450 76C2 (EC 1.14.-.-) (CYP76C2) [Arabidopsis Thaliana] (GB:O64637); similar to CYP76C4 (cytochrome P450, family 76, subfamily C, p"
MSGI1_1251	TC743	70.1	87.1	27.8	52.4	0	0	1.3	0	cell wall	TT7 (TRANSPARENT TESTA 7); flavonoid 3'-monooxygenase/ oxygen binding Required for flavonoid 3' hydroxylase activity. Identical to Flavonoid 3'-monooxygenase (EC 1.14.13.21) (Flavonoid 3'-hydroxylase) (AtF3'H) (Cytochrome P450 75B1) (TRANSPARENT TESTA 7
MSGI1_1251	TC743	70.1	87.1	27.8	52.4	0	0	1.3	0	secondary metabolism.flavonoids.dihydroflavonols.flavonoid 3'-monooxygenase	TT7 (TRANSPARENT TESTA 7); flavonoid 3'-monooxygenase/ oxygen binding Required for flavonoid 3' hydroxylase activity. Identical to Flavonoid 3'-monooxygenase (EC 1.14.13.21) (Flavonoid 3'-hydroxylase) (AtF3'H) (Cytochrome P450 75B1) (TRANSPARENT TESTA 7
MSGI1_63193	TC7435	5	4.4	23.5	9.2	0	0	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_29361	TC744	24.9	10.6	10	33.7	0	1.8	0	-1.7	misc.UDP glucosyl and glucoronyl transferases	"UDP-glucoronosyl/UDP-glucosyl transferase family protein  similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G36780.1); similar to DOGT1 (DON-GLUCOSYLTRANSFERASE), UDP-glycosyltransferase/ transferase, tra"
MSGI1_6032	TC745	25.2	9.8	12.1	39	0	1.7	0	-2	misc.UDP glucosyl and glucoronyl transferases	UGT73B2; UDP-glucosyltransferase/ UDP-glycosyltransferase/ flavonol 3-O-glucosyltransferase The At4g34135 gene encodes a flavonol 7-O-glucosyltransferase (EC 2.4.1.237) that glucosylates also with a 20 fold lower activity flavonols (kaempferol and querce
MSGI1_76424	TC7468	44.8	21.3	15.9	34	0	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_57942	TC7480	17	1.7	19.2	0.4	-3.3	-5.6	0	0	hormone metabolism.jasmonate.synthesis-degradation.jasmonate-O-methyltransferase	JMT (JASMONIC ACID CARBOXYL METHYLTRANSFERASE); jasmonate O-methyltransferase Encodes a S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase that catalyzes the formation of methyljasmonate from jasmonic acid.  Its expression is induced in resp
MSGI1_94228	TC7482	15.7	16.9	140.4	38.4	0	-1.9	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_6451	TC75	58.3	17.1	68.5	69.9	-1.8	0	0	-2	PS.calvin cyle.rubisco small subunit	"ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A)  Identical to Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) (RBCS-1A) [Arabidopsis Thaliana]"
MSGI1_864	TC750	40.4	50.8	76.6	33.9	0	-1.2	0	0	signalling.calcium	CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32); calcium- and calmodulin-dependent protein kinase/ kinase Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation ac
MSGI1_73540	TC7501	17.5	11	0	0	0	0	5.1	4.5	not assigned.unknown	not assigned.unknown
MSGI1_73539	TC7504	15.7	27.7	1.9	3.2	0	0	3	3.1	not assigned.unknown	not assigned.unknown
MSGI1_55710	TC7512	41.7	17.3	16.8	46.8	0	1.5	1.3	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_32241	TC7514	8.9	14.1	0	0	0	0	0	4.8	not assigned.unknown	not assigned.unknown
MSGI1_21804	TC7530	7.6	2.6	2.5	20.3	0	3	0	-3	secondary metabolism.flavonoids.flavonols	"UGT73C6 (UDP-glucosyl transferase 73C6); UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups The At2g36790 gene encodes a UDP-glucose:flavonol-3-O-glycoside-7-O-glucosyltransferase (UGT73C6)attaching a glucosyl res"
MSGI1_22220	TC7533	3.1	5.7	13.9	28	0	0	0	-2.3	not assigned.unknown	not assigned.unknown
MSGI1_43997	TC7557	4.5	7.7	16.7	30.3	0	0	0	-2	not assigned.unknown	not assigned.unknown
MSGI1_64279	TC7558	43	15.8	47.2	31	-1.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_51967	TC7566	13.9	14.7	44.5	13.6	0	-1.7	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_73997	TC7575	2.7	16.3	18.1	0.4	0	-5.5	-2.7	5.3	not assigned.unknown	not assigned.unknown
MSGI1_3760	TC758	155.4	56.3	55.3	60.9	-1.5	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_75434	TC7580	0.2	0.1	11.8	10.2	0	0	-5.9	-6.7	not assigned.unknown	not assigned.unknown
MSGI1_48487	TC7589	1.9	8.6	19.3	20.9	0	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_116502	TC759	50.3	22.1	0.4	0.4	-1.2	0	7	5.8	not assigned.unknown	not assigned.unknown
MSGI1_100604	TC7591	14.4	17.7	64.7	9.4	0	-2.8	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_15920	TC76	76.8	84.1	53.2	103.5	0	1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_3845	TC760	6.7	17	28.5	31.9	0	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_49832	TC7601	0.9	22.9	14.5	8.5	4.7	0	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_41487	TC7615	19.3	8.1	2.2	6.1	0	0	3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_20453	TC7622	78.1	97.5	0.2	0	0	0	8.6	7.6	not assigned.unknown	not assigned.unknown
MSGI1_6315	TC763	262.8	188.9	114.6	181.4	0	0	1.2	0	protein.synthesis.initiation	"EIF3G1 (eukaryotic translation initiation factor 3G1); RNA binding / translation initiation factor One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3). similar to EIF3G2 (eukaryotic translation initiation factor 3G2),"
MSGI1_5544	TC764	233.7	166.5	99.9	160.7	0	0	1.2	0	protein.synthesis.initiation	"EIF3G1 (eukaryotic translation initiation factor 3G1); RNA binding / translation initiation factor One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3). similar to EIF3G2 (eukaryotic translation initiation factor 3G2),"
MSGI1_79676	TC7653	6.5	15.8	12.6	43.2	0	1.8	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_2576	TC766	79.5	44.4	36.4	53.8	0	0	1.1	0	misc.misc2	"DGL1 (defective glycosylation 1); dolichyl-diphosphooligosaccharide-protein glycotransferase Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for th"
MSGI1_2576	TC766	79.5	44.4	36.4	53.8	0	0	1.1	0	cell wall	"DGL1 (defective glycosylation 1); dolichyl-diphosphooligosaccharide-protein glycotransferase Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for th"
MSGI1_2689	TC767	112.6	94.8	30.9	53.3	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_101493	TC7695	132.7	74	47.3	70	0	0	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_17921	TC770	30.9	86.5	159.1	89.9	1.5	0	-2.4	0	protein.postranslational modification	"CIPK4 (CBL-INTERACTING PROTEIN KINASE 4); kinase CBL-interacting protein kinase similar to CIPK7 (CBL-INTERACTING PROTEIN KINASE 7), kinase [Arabidopsis thaliana] (TAIR:AT3G23000.1); similar to CBL-interacting protein kinase 5 [Populus trichocarpa] (GB:A"
MSGI1_46148	TC7703	2.2	14.6	0.6	0.3	0	0	0	5.6	not assigned.unknown	not assigned.unknown
MSGI1_83194	TC7705	0	0	13.2	17.1	0	0	-4.7	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_25490	TC771	32.6	99.9	144.4	75	1.6	0	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_94943	TC7710	9.1	10.5	45.4	30.6	0	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_1418	TC772	150.4	132.6	77.4	105.9	0	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_19925	TC7729	176.1	105.4	69	95.2	0	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_6097	TC773	251.9	135.1	82.3	145.1	0	0	1.6	0	protein.synthesis.misc ribososomal protein	ATBBC1 (breast basic conserved 1); structural constituent of ribosome Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1). Identical to 60S ribosomal protein L13-1 (Protein BBC1 homolog) (RPL13B) [Arabidopsis Thaliana] (GB:
MSGI1_13002	TC7733	575.1	425.5	280.9	495.7	0	0	1	0	transport.H+ transporting pyrophosphatase	"AVP1 (vacuolar-type H+-pumping pyrophosphatase 1); ATPase Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including m"
MSGI1_5220	TC7736	61.1	42.1	28.3	49.7	0	0	1.1	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L4/L1 (RPL4A)  Identical to 60S ribosomal protein L4-1 (L1) (RPL4A) [Arabidopsis Thaliana] (GB:Q9SF40); similar to 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] (TAIR:AT5G02870.1); similar to putative 60S ribosomal prot
MSGI1_5343	TC7740	219.5	124	84	130	0	0	1.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L4/L1 (RPL4A)  Identical to 60S ribosomal protein L4-1 (L1) (RPL4A) [Arabidopsis Thaliana] (GB:Q9SF40); similar to 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] (TAIR:AT5G02870.1); similar to putative 60S ribosomal prot
MSGI1_15877	TC7741	1318.5	1225.5	586.8	991.6	0	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_25345	TC7746	26.6	65.3	13.6	34.2	1.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_5487	TC7748	44.6	23.1	16.5	23.6	0	0	1.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L4/L1 (RPL4A)  Identical to 60S ribosomal protein L4-1 (L1) (RPL4A) [Arabidopsis Thaliana] (GB:Q9SF40); similar to 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] (TAIR:AT5G02870.1); similar to putative 60S ribosomal prot
MSGI1_5486	TC775	388.1	230	195.5	292.8	0	0	1	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S3A (RPS3aA)  Identical to 40S ribosomal protein S3a-1 (RPS3AA) [Arabidopsis Thaliana] (GB:Q9CAV0); similar to 40S ribosomal protein S3A (RPS3aB) [Arabidopsis thaliana] (TAIR:AT4G34670.1); similar to 40S ribosomal protein S3a (S phas
MSGI1_12273	TC7752	524.7	258	242.1	251.2	-1	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_43587	TC7754	150.7	91.3	54	107.4	0	1	1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_20645	TC7755	252.7	182.3	124.5	164.5	0	0	1	0	hormone metabolism.brassinosteroid.signal transduction.BRI	"BRL2 (BRI1-LIKE 2); ATP binding / protein serine/threonine kinase Similar to BRI, brassinosteroid receptor protein. Identical to Serine/threonine-protein kinase BRI1-like 2 precursor (EC 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2) (Protein V"
MSGI1_32940	TC7756	323.7	210.6	160.3	201.2	0	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_4659	TC776	156.4	68.7	62.5	82.5	-1.2	0	1.3	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S3A (RPS3aA)  Identical to 40S ribosomal protein S3a-1 (RPS3AA) [Arabidopsis Thaliana] (GB:Q9CAV0); similar to 40S ribosomal protein S3A (RPS3aB) [Arabidopsis thaliana] (TAIR:AT4G34670.1); similar to 40S ribosomal protein S3a (S phas
MSGI1_35807	TC7760	1075.2	531.8	498.7	552.7	-1	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_135	TC7761	2030.8	1092.6	1022.8	1112.1	0	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_62101	TC7763	561.5	321.3	241.6	253.8	0	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_6939	TC7764	109.5	131.4	481.5	557	0	0	-2.1	-2.1	not assigned.unknown	not assigned.unknown
MSGI1_17503	TC7766	44.4	56	213.6	124.2	0	0	-2.3	-1.1	stress.abiotic.drought/salt	RD22 (RESPONSIVE TO DESSICATION 22) responsive to dehydration 22 (RD22) mediated by ABA Identical to Dehydration-responsive protein RD22 precursor (RD22) [Arabidopsis Thaliana] (GB:Q08298); similar to BURP domain-containing protein [Arabidopsis thaliana]
MSGI1_3494	TC7767	2.3	0.3	222.2	245.5	0	0	-6.6	-9.7	not assigned.unknown	not assigned.unknown
MSGI1_20978	TC7769	201.2	316.7	548.3	517	0	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_6650	TC7770	81.4	102.4	355.3	419.9	0	0	-2.1	-2	not assigned.unknown	not assigned.unknown
MSGI1_17865	TC7771	21.8	3.5	70.7	18.7	-2.6	-1.9	-1.7	-2.4	RNA.regulation of transcription.MYB-related transcription factor family	CPC (CAPRICE); DNA binding / transcription factor Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesma
MSGI1_23295	TC7772	80.5	130.2	41	75.6	0	0	1	0	cell wall.cell wall proteins.AGPs	FLA12 (fasciclin-like arabinogalactan-protein 12)  Identical to Fasciclin-like arabinogalactan protein 12 precursor (FLA12) [Arabidopsis Thaliana] (GB:Q8LEE9;GB:Q94EG7;GB:Q9FKJ8); similar to FLA11 (fasciclin-like arabinogalactan-protein 11) [Arabidopsis t
MSGI1_20545	TC7773	49.1	162.5	37.3	126.4	1.7	1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_4973	TC7777	38.6	42	0.1	0.1	0	0	8.6	8.7	not assigned.unknown	not assigned.unknown
MSGI1_56776	TC7780	202.2	1.2	112.7	2.9	-7.4	-5.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_14394	TC7786	472.8	550	220.6	385.2	0	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_72	TC7789	15.9	43.2	15.8	40.2	1.4	1.3	0	0	stress.abiotic.heat	heat shock protein-related  similar to ATP-dependent Clp protease ClpB protein-related [Arabidopsis thaliana] (TAIR:AT1G07200.2); similar to Os11g0104300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065527.1); similar to expressed protein [Oryza sat
MSGI1_40758	TC7790	0.1	0.2	22.3	29.4	0	0	-7.8	-7.2	not assigned.unknown	not assigned.unknown
MSGI1_9906	TC7791	2853.2	3488.6	1463.7	2354	0	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_4658	TC7793	89.5	111.7	17.5	25.8	0	0	2.4	2.1	not assigned.unknown	not assigned.unknown
MSGI1_4961	TC7796	1.3	2.4	50.2	63.5	0	0	-5.3	-4.7	not assigned.unknown	not assigned.unknown
MSGI1_4811	TC7798	0.5	0.7	183.8	345.5	0	0	-8.5	-8.9	not assigned.unknown	not assigned.unknown
MSGI1_48681	TC78	12.4	15	27.9	41.4	0	0	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_81972	TC780	0	0	85	124.9	0	0	-7.4	-8	not assigned.unknown	not assigned.unknown
MSGI1_26422	TC7802	36.8	121.7	35.9	95.3	1.7	1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_1148	TC7803	108.7	70.6	52.8	73.2	0	0	1	0	cell. vesicle transport	"coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16200.1); similar to Adaptin N terminal re (GB:ABE87941.1); similar to PREDICTED: similar to coatomer"
MSGI1_112870	TC7804	29.9	55.8	0.9	0.6	0	0	5.1	6.5	not assigned.unknown	not assigned.unknown
MSGI1_10489	TC7805	0.3	0.4	111.3	213.9	0	0.9	-8.5	-9.1	not assigned.unknown	not assigned.unknown
MSGI1_4991	TC7809	114.8	137.8	553.3	554.7	0	0	-2.3	-2	not assigned.unknown	not assigned.unknown
MSGI1_19202	TC7811	2873.9	3636.6	1475.4	2403	0	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_1603	TC782	30.7	44.7	88	18.6	0	-2.2	-1.5	0	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G28440.1); similar to leucine-rich repeat receptor-like protein kinase [Pyru"
MSGI1_1603	TC782	30.7	44.7	88	18.6	0	-2.2	-1.5	0	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G28440.1); similar to leucine-rich repeat receptor-like protein kinase [Pyru"
MSGI1_8548	TC7820	41.3	54.6	99.5	73.2	0	0	-1.3	0	protein.degradation.ubiquitin.ubiquitin	"UBQ14 (ubiquitin 14); protein binding Polyubiquitin gene containing 4 ubiquitin repeats. Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); similar to UBQ3 (POLYUBIQUITIN 3), pro"
MSGI1_24735	TC7825	20.7	22.4	60.1	42.4	0	0	-1.5	0	protein.aa activation	"UBQ11 (UBIQUITIN 11); protein binding polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14.  Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana"
MSGI1_19076	TC7827	406.3	181.4	141.5	216.6	-1.2	0	1.5	0	protein.degradation.ubiquitin	"UBQ1 (EARLY-RESPONSIVE TO DEHYDRATION 16, UBIQUITIN EXTENSION PROTEIN 1); protein binding Ubiquitin extension protein Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical"
MSGI1_19981	TC7828	26.3	15.9	4.3	5.5	0	0	2.6	0	protein.degradation.ubiquitin	"UBQ1 (EARLY-RESPONSIVE TO DEHYDRATION 16, UBIQUITIN EXTENSION PROTEIN 1); protein binding Ubiquitin extension protein Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical"
MSGI1_1166	TC7837	1457.5	1485.6	901.4	2181.9	0	1.3	0	0	PS.calvin cyle.rubisco interacting	"RCA (RUBISCO ACTIVASE) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco. Identical to Ribulose bisphosphate carboxylase/ox"
MSGI1_32031	TC7838	34.3	36.9	81.9	52	0	0	-1.3	0	PS.calvin cyle.rubisco interacting	"RCA (RUBISCO ACTIVASE) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco. Identical to Ribulose bisphosphate carboxylase/ox"
MSGI1_1325	TC784	17.1	36.4	57.7	16.7	0	-1.8	-1.8	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY33 (WRKY DNA-binding protein 33); transcription factor Member of the plant WRKY transcription factor family.  Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. Ident
MSGI1_53	TC7842	41.4	110.9	39.1	80.9	1.4	1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_6599	TC7843	556.7	367.1	242.7	414.2	0	0	1.2	0	protein.synthesis.elongation	elongation factor 1-alpha / EF-1-alpha  Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A) (A4) [Arabidopsis Thaliana] (GB:P13905); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar
MSGI1_1415	TC7844	1722.6	1214.5	763.8	1468.3	0	0.9	1.2	0	protein.synthesis.elongation	elongation factor 1-alpha / EF-1-alpha  Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A) (A4) [Arabidopsis Thaliana] (GB:P13905); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar
MSGI1_38901	TC7845	30.3	35.2	9.3	33.8	0	1.9	1.7	0	protein.synthesis.elongation	elongation factor 1-alpha / EF-1-alpha  Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A) (A4) [Arabidopsis Thaliana] (GB:P13905); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar
MSGI1_23906	TC7847	51.4	59.2	21.5	49.3	0	1.2	1.3	0	protein.synthesis.elongation	elongation factor 1-alpha / EF-1-alpha  Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A) (A4) [Arabidopsis Thaliana] (GB:P13905); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar
MSGI1_20743	TC7848	707	459.9	239.3	479.5	0	1	1.6	0	protein.synthesis.elongation	elongation factor 1-alpha / EF-1-alpha  Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A) (A4) [Arabidopsis Thaliana] (GB:P13905); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar
MSGI1_1494	TC7849	104	107.1	56	129.6	0	1.2	0	0	protein.synthesis.elongation	elongation factor 1-alpha / EF-1-alpha  Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A) (A4) [Arabidopsis Thaliana] (GB:P13905); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar
MSGI1_13704	TC7852	94.4	85.8	94.2	210.8	0	1.2	0	-1.3	protein.synthesis.elongation	elongation factor 1-alpha / EF-1-alpha  Identical to Elongation factor 1-alpha (EF-1-alpha) (eEF-1A) (A4) [Arabidopsis Thaliana] (GB:P13905); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar
MSGI1_178	TC7853	37.9	107.3	25.9	73.4	1.5	1.5	0	0	cell wall.cellulose synthesis.cellulose synthase	"CESA8 (CELLULASE SYNTHASE 8); cellulose synthase/ transferase, transferring glycosyl groups Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content,"
MSGI1_64277	TC7859	7.4	5.7	44.5	15.4	0	-1.5	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_6812	TC786	149.9	75.7	62.2	60.9	0	0	1.3	0	cell wall	"glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative  similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT2G39640.1); similar to beta-1,3 glucanase [Pisum sativum] (GB:CAB85903.1); contains InterPro domain X8; (I"
MSGI1_6812	TC786	149.9	75.7	62.2	60.9	0	0	1.3	0	"misc.beta 1,3 glucan hydrolases"	"glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative  similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT2G39640.1); similar to beta-1,3 glucanase [Pisum sativum] (GB:CAB85903.1); contains InterPro domain X8; (I"
MSGI1_4904	TC7861	116.9	57	75.3	26.5	-1	-1.5	0	1.1	not assigned.unknown	not assigned.unknown
MSGI1_23530	TC7862	171.2	295.3	319.9	66.4	0	-2.3	0	2.2	not assigned.unknown	not assigned.unknown
MSGI1_4709	TC7866	147.7	224.4	1044.8	221.8	0	-2.2	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_77977	TC7868	155.2	81.4	66.5	36.7	0	0	1.2	1.1	not assigned.unknown	not assigned.unknown
MSGI1_2300	TC7877	15.1	24.1	44.2	47.2	0	0	-1.5	0	protein.degradation.ubiquitin.proteasom	"26S proteasome regulatory subunit, putative  similar to 26S proteasome regulatory subunit, putative [Arabidopsis thaliana] (TAIR:AT1G04810.1); similar to Armadillo-like helical [Medicago truncatula] (GB:ABE85726.1); similar to B0402A04.3 [Oryza sativa (i"
MSGI1_4765	TC7879	119	82.2	43.4	69.6	0	0	1.5	0	cell wall	"TUB7 (tubulin beta-7 chain) Encodes a beta-tubulin that is expressed in leaves, roots and flowers. Identical to Tubulin beta-7 chain (Beta-7 tubulin) (TUBB7) [Arabidopsis Thaliana] (GB:P29515); similar to TUB3 (Tubulin beta-3), structural molecule [Arabi"
MSGI1_4765	TC7879	119	82.2	43.4	69.6	0	0	1.5	0	cell.organisation	"TUB7 (tubulin beta-7 chain) Encodes a beta-tubulin that is expressed in leaves, roots and flowers. Identical to Tubulin beta-7 chain (Beta-7 tubulin) (TUBB7) [Arabidopsis Thaliana] (GB:P29515); similar to TUB3 (Tubulin beta-3), structural molecule [Arabi"
MSGI1_6409	TC7880	60.1	49.1	26.5	30.7	0	0	1.2	0	cell wall	TUB3 (Tubulin beta-3); structural molecule encodes tubulin beta-2/beta-3 chain Identical to Tubulin beta-2/beta-3 chain (TUBB3) [Arabidopsis Thaliana] (GB:P29512); similar to TUB7 (tubulin beta-7 chain) [Arabidopsis thaliana] (TAIR:AT2G29550.1); similar
MSGI1_6409	TC7880	60.1	49.1	26.5	30.7	0	0	1.2	0	cell.organisation	TUB3 (Tubulin beta-3); structural molecule encodes tubulin beta-2/beta-3 chain Identical to Tubulin beta-2/beta-3 chain (TUBB3) [Arabidopsis Thaliana] (GB:P29512); similar to TUB7 (tubulin beta-7 chain) [Arabidopsis thaliana] (TAIR:AT2G29550.1); similar
MSGI1_1240	TC7881	137.9	72.1	64.6	53.9	0	0	1.1	0	cell wall	"TUB6 (BETA-6 TUBULIN) Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment. Identical to Tubulin beta-6 chain (Beta-6 tubulin) (TUBB6) [Arabidopsis Thaliana] (GB:P29514); similar to TUB3 (Tubulin beta-3), st"
MSGI1_1240	TC7881	137.9	72.1	64.6	53.9	0	0	1.1	0	cell.organisation	"TUB6 (BETA-6 TUBULIN) Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment. Identical to Tubulin beta-6 chain (Beta-6 tubulin) (TUBB6) [Arabidopsis Thaliana] (GB:P29514); similar to TUB3 (Tubulin beta-3), st"
MSGI1_1222	TC7882	202.2	82.3	65.7	76	-1.3	0	1.6	0	cell wall	TUB1 (tubulin beta-1 chain); structural molecule beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses Identical to Tubulin beta-1 chain (B
MSGI1_1222	TC7882	202.2	82.3	65.7	76	-1.3	0	1.6	0	cell.organisation	TUB1 (tubulin beta-1 chain); structural molecule beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses Identical to Tubulin beta-1 chain (B
MSGI1_38998	TC7885	79.1	53.6	21.5	35.4	0	0	1.9	0	cell.organisation	TUB3 (Tubulin beta-3); structural molecule encodes tubulin beta-2/beta-3 chain Identical to Tubulin beta-2/beta-3 chain (TUBB3) [Arabidopsis Thaliana] (GB:P29512); similar to TUB7 (tubulin beta-7 chain) [Arabidopsis thaliana] (TAIR:AT2G29550.1); similar
MSGI1_38998	TC7885	79.1	53.6	21.5	35.4	0	0	1.9	0	cell wall	TUB3 (Tubulin beta-3); structural molecule encodes tubulin beta-2/beta-3 chain Identical to Tubulin beta-2/beta-3 chain (TUBB3) [Arabidopsis Thaliana] (GB:P29512); similar to TUB7 (tubulin beta-7 chain) [Arabidopsis thaliana] (TAIR:AT2G29550.1); similar
MSGI1_29360	TC7886	82.9	50.5	0.1	0	0	0	9.7	6.7	cell.organisation	TUB3 (Tubulin beta-3); structural molecule encodes tubulin beta-2/beta-3 chain Identical to Tubulin beta-2/beta-3 chain (TUBB3) [Arabidopsis Thaliana] (GB:P29512); similar to TUB7 (tubulin beta-7 chain) [Arabidopsis thaliana] (TAIR:AT2G29550.1); similar
MSGI1_5762	TC7891	273.9	328.9	241.2	158.3	0	0	0	1.1	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_5762	TC7891	273.9	328.9	241.2	158.3	0	0	0	1.1	cell wall	PIP1B (plasma membrane intrinsic protein 1;2); water channel a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein le
MSGI1_5762	TC7891	273.9	328.9	241.2	158.3	0	0	0	1.1	transport.Major Intrinsic Proteins.PIP	PIP1B (plasma membrane intrinsic protein 1;2); water channel a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein le
MSGI1_4545	TC7893	41.5	17.6	90.5	55.7	0	0	-1.1	-1.7	cell wall	PIP1A (plasma membrane intrinsic protein 1;1); water channel a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein le
MSGI1_4545	TC7893	41.5	17.6	90.5	55.7	0	0	-1.1	-1.7	transport.Major Intrinsic Proteins.PIP	PIP1A (plasma membrane intrinsic protein 1;1); water channel a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein le
MSGI1_4545	TC7893	41.5	17.6	90.5	55.7	0	0	-1.1	-1.7	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_30233	TC7895	80.5	102.3	44.6	24.3	0	0	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_3686	TC7896	235.5	133.6	96.3	40.7	0	-1.2	1.3	1.7	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_3686	TC7896	235.5	133.6	96.3	40.7	0	-1.2	1.3	1.7	cell wall	"PIP2;4/PIP2F (plasma membrane intrinsic protein 2;4); water channel  Identical to Probable aquaporin PIP2.4 (Plasma membrane intrinsic protein 2.4) (PIP2.4) [Arabidopsis Thaliana] (GB:Q9FF53); similar to PIP2B (plasma membrane intrinsic protein 2,2), wat"
MSGI1_3686	TC7896	235.5	133.6	96.3	40.7	0	-1.2	1.3	1.7	transport.Major Intrinsic Proteins.PIP	"PIP2;4/PIP2F (plasma membrane intrinsic protein 2;4); water channel  Identical to Probable aquaporin PIP2.4 (Plasma membrane intrinsic protein 2.4) (PIP2.4) [Arabidopsis Thaliana] (GB:Q9FF53); similar to PIP2B (plasma membrane intrinsic protein 2,2), wat"
MSGI1_77436	TC79	405.4	407.4	108	234.9	0	1.1	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_4818	TC790	27.1	38.7	65.1	45.1	0	0	-1.3	0	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	GRAM domain-containing protein / ABA-responsive protein-related  similar to GRAM domain-containing protein / ABA-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G23370.1); similar to Os02g0636700 [Oryza sativa (japonica cultivar-group)] (GB:NP_
MSGI1_938	TC7903	1498.8	691.4	564.9	453.7	-1.1	0	1.4	0	amino acid metabolism.degradation.aspartate family.methionine	HOG1 (HOMOLOGY-DEPENDENT GENE SILENCING 1); adenosylhomocysteinase Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing. Identical to Adenosylhomocysteinase 1 (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolas
MSGI1_19462	TC7904	33	41.1	86	119.1	0	0	-1.4	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_9948	TC7905	7.1	14.4	49.4	34.2	0	0	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_6529	TC7906	264.6	327.5	2393.2	2350	0	0	-3.2	-2.8	not assigned.unknown	not assigned.unknown
MSGI1_78518	TC7907	114.1	96.6	19	71	0	1.9	2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_29285	TC7908	323.5	513.1	2861.2	1035	0	-1.5	-3.1	-1	not assigned.unknown	not assigned.unknown
MSGI1_6823	TC7909	54.3	55.1	217.7	202.7	0	0	-2	-1.9	not assigned.unknown	not assigned.unknown
MSGI1_1053	TC791	16.5	37.1	16.5	40.8	0	1.3	0	0	protein.synthesis.initiation	"ZLL (ZWILLE) Translation initiation factor. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Identical t"
MSGI1_32126	TC7910	138.2	190.8	617.1	967.8	0	0	-2.2	-2.3	not assigned.unknown	not assigned.unknown
MSGI1_8750	TC7911	10.2	14	28.9	79.7	0	1.5	0	-2.5	not assigned.unknown	not assigned.unknown
MSGI1_57940	TC7912	105.7	169.7	623.8	317.2	0	0	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_50788	TC7913	30.5	42.1	75	71.9	0	0	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_60405	TC7914	317.2	364.1	1104.5	1056.2	0	0	-1.8	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_14364	TC7915	89.8	39.3	50.3	45	-1.2	0	0	0	DNA.synthesis/chromatin structure.histone	histone H2B  Identical to Histone H2B.11 (HTB4) [Arabidopsis Thaliana] (GB:P40283;GB:Q5PP00;GB:Q8LDE5;GB:Q9FJE5); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold;
MSGI1_91912	TC7916	33.9	19.6	8.8	20.4	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_19887	TC7917	96.6	43.7	31.7	28.4	-1.1	0	1.6	0	DNA.synthesis/chromatin structure.histone	"histone H2B, putative  Identical to Histone H2B.1 (HTB1) [Arabidopsis Thaliana] (GB:Q9LQQ4;GB:Q8L950); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold; (InterPro:"
MSGI1_40412	TC7918	116.2	56.2	27.6	38.3	-1	0	2.1	0	DNA.synthesis/chromatin structure.histone	"histone H2B, putative  Identical to Histone H2B.1 (HTB1) [Arabidopsis Thaliana] (GB:Q9LQQ4;GB:Q8L950); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold; (InterPro:"
MSGI1_45493	TC7919	104.7	56.9	51.3	54.6	0	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_60404	TC7922	34.9	14.6	6.5	3.2	0	0	2.4	0	DNA.synthesis/chromatin structure.histone	"histone H2B, putative  Identical to Histone H2B.10 (HTB2) [Arabidopsis Thaliana] (GB:Q9FFC0;GB:Q96516); similar to histone H2B, putative [Arabidopsis thaliana] (TAIR:AT3G46030.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold;"
MSGI1_13458	TC7924	97.6	45.2	51.5	44.8	-1.1	0	0	0	DNA.synthesis/chromatin structure.histone	"histone H2B, putative  Identical to Histone H2B.1 (HTB1) [Arabidopsis Thaliana] (GB:Q9LQQ4;GB:Q8L950); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold; (InterPro:"
MSGI1_5683	TC7925	115.4	127.5	338.8	88.6	0	-1.9	-1.6	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_5683	TC7925	115.4	127.5	338.8	88.6	0	-1.9	-1.6	0	stress.abiotic.drought/salt	similar to nodulin-related [Arabidopsis thaliana] (TAIR:AT2G03440.1); similar to drought-induced protein SDi-6 - common sunflower (fragment) (GB:S71562)
MSGI1_8078	TC7928	173	146	490.5	491.5	0	0	-1.5	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_13899	TC7929	37.1	137.2	94.9	111.2	1.9	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_30882	TC7931	236.3	244.8	588.2	138.8	0	-2.1	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_76917	TC7933	6.3	6.8	185.6	321.1	0	0	-4.9	-5.6	not assigned.unknown	not assigned.unknown
MSGI1_8268	TC7934	166.9	99.4	164.5	238	0	0	0	-1.3	PS.lightreaction.ATP synthase	"ATP synthase family  similar to H+-transporting two-sector ATPase, B/B subunit [Medicago truncatula] (GB:ABE81773.1); contains InterPro domain ATPase, F0 complex, subunit B/B&apos; (InterPro:IPR002146)"
MSGI1_32125	TC7935	18.1	12.9	70	15.5	0	-2.2	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_26214	TC7938	20.4	68.3	47.6	19.4	1.7	-1.3	0	1.8	stress.biotic	"disease resistance protein (CC-NBS-LRR class), putative  Identical to Probable disease resistance protein At5g66900 [Arabidopsis Thaliana] (GB:Q9FKZ1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G66"
MSGI1_1972	TC794	56.4	78.8	30.2	36.6	0	0	0	1.1	not assigned.unknown	not assigned.unknown
MSGI1_7431	TC7940	16.8	24	1	0	0	0	4.1	5.6	stress.biotic	"disease resistance protein (CC-NBS-LRR class), putative  Identical to Probable disease resistance protein At5g66900 [Arabidopsis Thaliana] (GB:Q9FKZ1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G66"
MSGI1_140	TC7942	46.8	101.9	71.8	38.9	1.1	0	0	1.4	stress.biotic	"disease resistance protein (CC-NBS-LRR class), putative  Identical to Probable disease resistance protein At5g66900 [Arabidopsis Thaliana] (GB:Q9FKZ1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G66"
MSGI1_140	TC7942	46.8	101.9	71.8	38.9	1.1	0	0	1.4	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_5208	TC7943	552.4	350.7	563.5	758.2	0	0	0	-1.1	PS.lightreaction.photosystem II.PSII polypeptide subunits	PSBO-1 (OXYGEN-EVOLVING ENHANCER 33) Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In <i>Arabidopsis thaliana</i> the PsbO protein
MSGI1_27368	TC7945	345.2	228.6	551.7	784.6	0	0	0	-1.8	PS.lightreaction.photosystem II.PSII polypeptide subunits	PSBO-2/PSBO2 (PHOTOSYSTEM II SUBUNIT O-2); oxygen evolving Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In <i>Arabidopsis thalian
MSGI1_1295	TC7947	382.7	320.1	152.6	209.1	0	0	1.3	0	C1-metabolism.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_1295	TC7947	382.7	320.1	152.6	209.1	0	0	1.3	0	PS.photorespiration.serine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_1295	TC7947	382.7	320.1	152.6	209.1	0	0	1.3	0	amino acid metabolism.synthesis.serine-glycine-cysteine group.glycine.glycine hydroxymethyltransferase	"SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase Encodes a serine hydroxymethyltransferase maximally expressed in root similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana]"
MSGI1_117376	TC7949	1.4	113.3	45.6	272.9	6.3	2.6	-5	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_3705	TC7950	16.1	89.3	181.1	201.1	2.5	0	-3.5	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_16853	TC7951	0.3	57.4	85.7	56.5	7.6	0	-8.2	0	not assigned.unknown	not assigned.unknown
MSGI1_720	TC7952	34.5	169.6	278.8	326.4	2.3	0	-3	0	signalling.receptor kinases.DUF 26	"protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23150.1); similar to CRK10 (CYSTEINE-RICH RLK10), kinase [Arabidopsis thaliana] (TAIR:AT4G23180.1); similar to CRK6 (CYSTEINE-RICH RLK 6), kinase [Ar"
MSGI1_1270	TC7953	744.1	968.7	3145.2	1469.5	0	-1.1	-2.1	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.COMT	ATOMT1 (O-METHYLTRANSFERASE 1) A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay.  AtOMT1 (At5g54160) encodes a flavonol 3?-O-methyltransferase that is highly active towards quercetin and myr
MSGI1_5931	TC7954	56.4	35	69.8	207.4	0	1.6	0	-2.6	PS.calvin cyle.aldolase	"fructose-bisphosphate aldolase, putative  similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT4G38970.1); similar to plastidic aldolase NPALDP1 [Nicotiana paniculata] (GB:BAA77604.1); similar to latex plastidic aldolase-lik"
MSGI1_5610	TC7955	196.4	179.6	130.8	430.8	0	1.7	0	-1.3	PS.calvin cyle.aldolase	"fructose-bisphosphate aldolase, putative  similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT4G38970.1); similar to plastidic aldolase NPALDP1 [Nicotiana paniculata] (GB:BAA77604.1); similar to latex plastidic aldolase-lik"
MSGI1_2291	TC7956	333.1	325.5	203.3	735.5	0	1.9	0	-1.2	PS.calvin cyle.aldolase	"fructose-bisphosphate aldolase, putative  similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT4G38970.1); similar to plastidic aldolase NPALDP1 [Nicotiana paniculata] (GB:BAA77604.1); similar to latex plastidic aldolase-lik"
MSGI1_5736	TC7957	156.3	93.3	29.5	74.3	0	1.3	2.4	0	PS.calvin cyle.aldolase	"fructose-bisphosphate aldolase, putative  similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT4G38970.1); similar to plastidic aldolase NPALDP1 [Nicotiana paniculata] (GB:BAA77604.1); similar to latex plastidic aldolase-lik"
MSGI1_25279	TC7958	89.1	51.8	55.4	133	0	1.3	0	-1.4	PS.calvin cyle.aldolase	"fructose-bisphosphate aldolase, putative  similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT2G21330.1); similar to plastidic aldolase NPALDP1 [Nicotiana paniculata] (GB:BAA77604.1); similar to latex plastidic aldolase-lik"
MSGI1_6270	TC7959	40.2	37.6	32.3	116.6	0	1.9	0	-1.6	PS.calvin cyle.aldolase	"fructose-bisphosphate aldolase, putative  similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT4G38970.1); similar to plastidic aldolase NPALDP1 [Nicotiana paniculata] (GB:BAA77604.1); similar to latex plastidic aldolase-lik"
MSGI1_7266	TC7960	118.8	83.1	92.8	221.5	0	1.3	0	-1.4	PS.calvin cyle.aldolase	"fructose-bisphosphate aldolase, putative  similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT4G38970.1); similar to plastidic aldolase NPALDP1 [Nicotiana paniculata] (GB:BAA77604.1); similar to latex plastidic aldolase-lik"
MSGI1_780	TC7966	18.2	36.1	84.9	39.6	0	-1.1	-2.2	0	protein.degradation.metalloprotease	VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex wi
MSGI1_395	TC7968	140.1	294.6	276.7	211.2	1.1	0	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	PAL1 (PHE AMMONIA LYASE 1); phenylalanine ammonia-lyase encodes a protein similar to phenylalanine ammonia-lyase Identical to Phenylalanine ammonia-lyase 1 (EC 4.3.1.5) (PAL1) [Arabidopsis Thaliana] (GB:P35510;GB:Q94AN1;GB:Q9ZQD6); similar to PAL2 (pheny
MSGI1_11197	TC7969	120.3	127.5	155	66.5	0	-1.2	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	PAL1 (PHE AMMONIA LYASE 1); phenylalanine ammonia-lyase encodes a protein similar to phenylalanine ammonia-lyase Identical to Phenylalanine ammonia-lyase 1 (EC 4.3.1.5) (PAL1) [Arabidopsis Thaliana] (GB:P35510;GB:Q94AN1;GB:Q9ZQD6); similar to PAL2 (pheny
MSGI1_51237	TC7972	19.7	30.4	42.4	13.7	0	-1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_8886	TC7973	19.4	10.9	73.5	33.6	0	-1.1	-1.9	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_2824	TC7981	12.9	30.2	43.2	20.1	0	0	-1.7	0	"RNA.regulation of transcription.G2-like transcription factor family, GARP"	transcription factor  similar to MYR1 (MYB-RELATED PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G18240.4); similar to Os03g0325500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049984.1); similar to transfactor-like protein [Oryza sativa (japonica cul
MSGI1_2824	TC7981	12.9	30.2	43.2	20.1	0	0	-1.7	0	minor CHO metabolism.callose	"CALS5 (CALLOSE SYNTHASE 5); 1,3-beta-glucan synthase Responsible for the synthesis of callose deposited at the primary cell wall of meiocytes, tetrads and microspores. Required for exine formation during microgametogenesis and for pollen viability. Highe"
MSGI1_6632	TC7984	11.4	17.2	43	32.8	0	0	-1.9	0	amino acid metabolism.synthesis.aspartate family.lysine.dihydrodipicolinate reductase	dihydrodipicolinate reductase family protein  similar to dihydrodipicolinate reductase [Medicago truncatula] (GB:ABE86300.1); contains InterPro domain Dihydrodipicolinate reductase; (InterPro:IPR000846); contains InterPro domain Dihydrodipicolinate reduc
MSGI1_20304	TC7989	99.1	23.6	70.7	36.5	-2.1	0	0	0	misc.glutathione S transferases	ATGSTU22 (Arabidopsis thaliana Glutathione S-transferase (class tau) 22); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU19 (GLUTATHIONE TR
MSGI1_24412	TC7991	6.4	1.5	83.7	24.2	0	-1.8	-3.7	-4	misc.glutathione S transferases	ATGSTU25 (Arabidopsis thaliana Glutathione S-transferase (class tau) 25); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU24 (Arabidopsis th
MSGI1_21803	TC7993	65.1	19.8	46	35.7	-1.7	0	0	0	misc.glutathione S transferases	ATGSTU25 (Arabidopsis thaliana Glutathione S-transferase (class tau) 25); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU24 (Arabidopsis th
MSGI1_17863	TC7994	215.8	255.9	1413.7	1578.8	0	0	-2.7	-2.6	not assigned.unknown	not assigned.unknown
MSGI1_44584	TC7995	252.3	303.7	614.3	1606.8	0	1.4	-1.3	-2.4	not assigned.unknown	not assigned.unknown
MSGI1_39716	TC7996	0	0	284.2	334.6	0	0	-9.2	-9.4	not assigned.unknown	not assigned.unknown
MSGI1_53587	TC7997	22.2	13.1	101.1	94.6	0	0	-2.2	-2.9	not assigned.unknown	not assigned.unknown
MSGI1_41283	TC7998	11.5	19.3	97.9	178.7	0	0	-3.1	-3.2	not assigned.unknown	not assigned.unknown
MSGI1_8515	TC7999	293.3	329.9	1352.7	1553.7	0	0	-2.2	-2.2	stress.abiotic.drought/salt	RD22 (RESPONSIVE TO DESSICATION 22) responsive to dehydration 22 (RD22) mediated by ABA Identical to Dehydration-responsive protein RD22 precursor (RD22) [Arabidopsis Thaliana] (GB:Q08298); similar to BURP domain-containing protein [Arabidopsis thaliana]
MSGI1_3014	TC800	53.9	112.6	74.5	100.1	1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_15919	TC8000	16.6	33.4	83.9	95.4	0	0	-2.3	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_29178	TC8001	7.1	14.2	78.2	97.1	0	0	-3.5	-2.8	not assigned.unknown	not assigned.unknown
MSGI1_3769	TC8002	21.2	39.8	73.7	77.7	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_68562	TC8003	4.9	12.7	35.7	42.1	0	0	-2.9	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_64974	TC8004	8.9	18.9	0.4	0.6	0	0	0	5	not assigned.unknown	not assigned.unknown
MSGI1_10300	TC8006	9.3	15.4	32.8	52.6	0	0	-1.8	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_66489	TC8007	0	0	27	63.8	0	1.2	-5.8	-7	not assigned.unknown	not assigned.unknown
MSGI1_86407	TC8008	2.6	5.1	30.7	36	0	0	-3.6	-2.8	not assigned.unknown	not assigned.unknown
MSGI1_28882	TC8010	12.4	22.6	54.3	63.5	0	0	-2.1	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_51150	TC8013	50.2	24.4	10.9	28.9	0	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_1576	TC8014	147.8	69.7	57.4	112.7	-1.1	1	1.4	0	PS.calvin cyle.rubisco interacting	"CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding / unfolded protein binding encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acqui"
MSGI1_27030	TC8015	51.8	26.7	19.2	39.7	0	0	1.4	0	PS.calvin cyle.rubisco interacting	"CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding / unfolded protein binding encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acqui"
MSGI1_7452	TC8016	207.1	104.7	77.9	123.9	0	0	1.4	0	stress.abiotic.heat	BIP (LUMINAL BINDING PROTEIN); ATP binding luminal binding protein (BiP) Identical to Luminal-binding protein 2 precursor (BiP2) (AtBP2) [Arabidopsis Thaliana] (GB:Q39043;GB:Q39042); Identical to Luminal-binding protein 1 precursor (BiP1) (AtBP1) [Arabido
MSGI1_2265	TC8019	183	103.1	65.3	119.8	0	0	1.5	0	stress.abiotic.heat	luminal binding protein 1 (BiP-1) (BP1)  Identical to Luminal-binding protein 2 precursor (BiP2) (AtBP2) [Arabidopsis Thaliana] (GB:Q39043;GB:Q39042); Identical to Luminal-binding protein 1 precursor (BiP1) (AtBP1) [Arabidopsis Thaliana] (GB:Q9LKR3;GB:Q4
MSGI1_693	TC8021	49.6	63.8	44.9	26.5	0	0	0	1.3	not assigned.unknown	not assigned.unknown
MSGI1_73538	TC8022	14.7	16.1	0.8	0.2	0	0	4.2	6.3	not assigned.unknown	not assigned.unknown
MSGI1_2237	TC8025	136.5	58.8	47.1	51.4	-1.2	0	1.5	0	"metal handling.binding, chelation and storage"	"MAT3 (METHIONINE ADENOSYLTRANSFERASE 3); methionine adenosyltransferase  similar to SAM1 (S-adenosylmethionine synthetase 1), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT1G02500.2); similar to MTO3 (S-adenosylmethionine synthase 3), met"
MSGI1_2237	TC8025	136.5	58.8	47.1	51.4	-1.2	0	1.5	0	amino acid metabolism.synthesis.aspartate family.methionine.S-adenosylmethionine synthetase	"MAT3 (METHIONINE ADENOSYLTRANSFERASE 3); methionine adenosyltransferase  similar to SAM1 (S-adenosylmethionine synthetase 1), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT1G02500.2); similar to MTO3 (S-adenosylmethionine synthase 3), met"
MSGI1_1207	TC8027	75	114.8	195.3	162	0	0	-1.4	0	protein.degradation.aspartate protease	aspartyl protease family protein  similar to pepsin A [Arabidopsis thaliana] (TAIR:AT1G62290.2); similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT4G04460.1); similar to aspartic protease (GB:AAB03108.1); similar to Aspartic prot
MSGI1_818	TC8028	77.9	103.7	247.3	117	0	-1.1	-1.7	0	protein.degradation.aspartate protease	aspartyl protease family protein  similar to pepsin A [Arabidopsis thaliana] (TAIR:AT1G62290.2); similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT4G04460.1); similar to aspartic protease (GB:AAB03108.1); similar to Aspartic prot
MSGI1_106056	TC803	4.1	2.6	42.3	38.9	0	0	-3.4	-3.9	transport.p- and v-ATPases.H+-transporting two-sector ATPase	"H+-transporting two-sector ATPase, putative  Identical to Probable vacuolar ATP synthase subunit d 2 (EC 3.6.3.14) (V-ATPase d subunit 2) (Vacuolar proton pump subunit d 2) [Arabidopsis Thaliana] (GB:Q9LHA4); Identical to Probable vacuolar ATP synthase s"
MSGI1_6450	TC8038	132.1	95.3	62.9	82.9	0	0	1.1	0	DNA.synthesis/chromatin structure.histone	"histone H1, putative  Identical to Histone H1.1 [Arabidopsis Thaliana] (GB:P26568); similar to histone H1.2 [Arabidopsis thaliana] (TAIR:AT2G30620.1); similar to histone H1 [Lathyrus sativus] (GB:AAK29452.1); similar to histone H1 (GB:AAC41651.1); simila"
MSGI1_3667	TC8046	154.3	139.4	466.8	347.4	0	0	-1.6	-1.3	cell.organisation	"ANNAT1 (ANNEXIN ARABIDOPSIS 1); calcium ion binding / calcium-dependent phospholipid binding Encodes a member of the annexin gene family, a diverse, multigene family of calcium-dependent, membrane-binding proteins. The protein was determined to have pero"
MSGI1_5784	TC8050	46.8	37.1	83.3	124.1	0	0	0	-1.7	PS.lightreaction.photosystem I.LHC-I	"LHCA2 (Photosystem I light harvesting complex gene 2); chlorophyll binding Encodes a component of the light harvesting antenna complex of photosystem I. similar to LHCA6 (Photosystem I light harvesting complex gene 6), chlorophyll binding [Arabidopsis th"
MSGI1_1035	TC8053	66.5	135.7	72.1	113.6	1	0	0	0	hormone metabolism.auxin.signal transduction	"amino acid permease, putative  Identical to Auxin transporter-like protein 3 (AUX1-like protein 3) (LAX3) [Arabidopsis Thaliana] (GB:Q9CA25); similar to amino acid permease, putative [Arabidopsis thaliana] (TAIR:AT2G21050.1); similar to amino acid permea"
MSGI1_1593	TC8054	15.4	48.4	20.6	61.2	1.7	1.6	0	0	transport.amino acids	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_1593	TC8054	15.4	48.4	20.6	61.2	1.7	1.6	0	0	transport.misc	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_1593	TC8054	15.4	48.4	20.6	61.2	1.7	1.6	0	0	hormone metabolism.auxin.signal transduction	AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Iden
MSGI1_457	TC8059	63.4	146	184.2	136.1	1.2	0	-1.5	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	"BLH1 (BLH1); DNA binding / transcription factor BEL1-like homeodomain 1 (BLH1) similar to BLH4 (BLH4), DNA binding [Arabidopsis thaliana] (TAIR:AT2G23760.3); similar to BEL1-like homeodomain transcription factor [Trifolium pratense] (GB:BAE71188.1); cont"
MSGI1_53022	TC8060	0	0	55.8	64.6	0	0	-6.8	-7	not assigned.unknown	not assigned.unknown
MSGI1_51236	TC8062	9.4	19	3.9	2	0	0	0	3.2	not assigned.unknown	not assigned.unknown
MSGI1_564	TC8072	43	46.6	141.4	74.1	0	0	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_15147	TC8077	18.2	40.9	46.6	62.8	0	0	-1.4	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_15147	TC8077	18.2	40.9	46.6	62.8	0	0	-1.4	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_13353	TC8078	17.1	2.6	19.8	8.4	-2.7	0	0	0	cell wall	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_13353	TC8078	17.1	2.6	19.8	8.4	-2.7	0	0	0	lipid metabolism.lipid transfer proteins etc	"LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding lipid transfer protein 3 Identical to Nonspecific lipid-transfer protein 3 precursor (LTP 3) (LTP3) [Arabidopsis Thaliana] (GB:Q9LLR7;GB:Q9FIE6); similar to LTP4 (LIPID TRANSFER PROTEIN 4), lipid binding [Ar"
MSGI1_4817	TC8079	301.6	202.4	132.1	306.1	0	1.2	1.2	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_4817	TC8079	301.6	202.4	132.1	306.1	0	1.2	1.2	0	tetrapyrrole synthesis.protochlorophyllide reductase	"PORA (Protochlorophyllide reductase A); oxidoreductase/ protochlorophyllide reductase light-dependent NADPH:protochlorophyllide oxidoreductase A Identical to Protochlorophyllide reductase A, chloroplast precursor (EC 1.3.1.33) (PCR A) (NADPH-protochlorop"
MSGI1_83852	TC8087	35.9	12.9	1.6	3	-1.5	0	4.5	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_3183	TC809	31.2	56.8	84.7	111.8	0	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_20857	TC8090	44.4	13.8	15.2	11.1	-1.7	0	1.5	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_21529	TC8091	87.6	30.7	22.8	24.6	-1.5	0	1.9	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_62100	TC8093	21.3	6.2	3.1	2.1	0	0	2.8	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabid
MSGI1_1423	TC8095	205.6	552.7	305.8	353.4	1.4	0	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.HCT	transferase family protein At5g48930 has been shown to encode for the hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase (HCT) both synthesizing and catabolizing the hydroxycinnamoylesters (coumaroyl/caffeoyl shikimate and quinate)
MSGI1_624	TC8102	115.3	90.7	39.2	87	0	1.2	1.6	0	protein.degradation.subtilases	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_624	TC8102	115.3	90.7	39.2	87	0	1.2	1.6	0	cell wall	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_27878	TC8103	64.9	45.6	27.9	37.6	0	0	1.2	0	protein.degradation.subtilases	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_113112	TC8104	35.4	27.2	5	11.9	0	0	2.8	0	protein.degradation.subtilases	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_6562	TC8106	91.4	139.7	51.2	68	0	0	0	1	not assigned.unknown	not assigned.unknown
MSGI1_323	TC8109	26.6	29.9	62.3	42	0	0	-1.2	0	transport.metal	"YSL3 (YELLOW STRIPE LIKE 3); oligopeptide transporter  similar to YSL2 (YELLOW STRIPE LIKE 2), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G24380.1); similar to YSL1 (YELLOW STRIPE LIKE 1), oligopeptide transporter [Arabidopsis thaliana] (TA"
MSGI1_2746	TC811	46.7	182.3	52.8	31	2	0	0	2.6	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G46620.1); similar to Zinc finger, RING-type; Thioredoxin-related; RINGv [Medicago truncatula] (GB:ABE8198"
MSGI1_630	TC8121	96.1	41.5	37.5	44.7	-1.2	0	1.4	0	cell wall	dehydration-responsive protein-related  similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G14430.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT3G23300.1); similar to dehydration-respo
MSGI1_630	TC8121	96.1	41.5	37.5	44.7	-1.2	0	1.4	0	stress.abiotic.drought/salt	dehydration-responsive protein-related  similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G14430.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT3G23300.1); similar to dehydration-respo
MSGI1_920	TC8122	58.3	19.8	24.8	17.6	-1.6	0	1.2	0	cell wall	dehydration-responsive protein-related  similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G14430.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT3G23300.1); similar to dehydration-respo
MSGI1_920	TC8122	58.3	19.8	24.8	17.6	-1.6	0	1.2	0	stress.abiotic.drought/salt	dehydration-responsive protein-related  similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G14430.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT3G23300.1); similar to dehydration-respo
MSGI1_95	TC8123	233.9	344.1	166.2	327.5	0	1	0	0	transport.p- and v-ATPases.H+-exporting ATPase	"AHA2 (Arabidopsis H(+)-ATPase 2); ATPase belongs to the P-type ATPase superfamily of cation-transporting ATPases, pumps protons out of the cell, generating a proton gradient that drives the active transport of nutrients by proton symport. has two autoinh"
MSGI1_1584	TC8126	164.3	77.6	292.8	89.5	-1.1	-1.7	0	0	transport.metal	CAX3 (cation exchanger 3); cation:cation antiporter  Identical to Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger 3) (Ca(2+)/H(+) antiporter CAX3) (CAX3) [Arabidopsis Thaliana] (GB:Q93Z81;GB:O65022;GB:Q0WUY4;GB:Q9LKW8); similar to CAX1 (CATION
MSGI1_1584	TC8126	164.3	77.6	292.8	89.5	-1.1	-1.7	0	0	transport.calcium	CAX3 (cation exchanger 3); cation:cation antiporter  Identical to Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger 3) (Ca(2+)/H(+) antiporter CAX3) (CAX3) [Arabidopsis Thaliana] (GB:Q93Z81;GB:O65022;GB:Q0WUY4;GB:Q9LKW8); similar to CAX1 (CATION
MSGI1_863	TC8130	52.1	104.5	179.5	123.2	1	0	-1.8	0	stress.abiotic.heat	"HSP70B (heat shock protein 70B); ATP binding  similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR:AT3G12580.1); similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); s"
MSGI1_2840	TC8138	90.7	186	134.6	228.6	1	0	0	0	fermentation.ADH	ADH1 (ALCOHOL DEHYDROGENASE 1); alcohol dehydrogenase Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treat
MSGI1_8514	TC8139	43.3	114.5	173.3	170.5	1.4	0	-2	0	fermentation.ADH	ADH1 (ALCOHOL DEHYDROGENASE 1); alcohol dehydrogenase Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treat
MSGI1_70711	TC8140	14.6	37.8	55.9	59	0	0	-1.9	0	fermentation.ADH	ADH1 (ALCOHOL DEHYDROGENASE 1); alcohol dehydrogenase Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treat
MSGI1_3704	TC8142	184.7	596.5	185.9	1134.7	1.7	2.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_21459	TC8148	106.8	68.7	3.4	4	0	0	5	4.1	protein.targeting.secretory pathway.unspecified	"ATARFA1E (ADP-ribosylation factor A1E); GTP binding / phospholipase activator/ protein binding A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding."
MSGI1_12239	TC8150	159.1	77.9	109.3	51.7	-1	-1.1	0	0	cell wall.precursor synthesis.UGD	"ATUGD1/UGD1 (UDP-glucose dehydrogenase 1); UDP-glucose 6-dehydrogenase  similar to UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G29360.2); similar to UDP-glucose 6-dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G39320.1); similar"
MSGI1_7265	TC8151	226.1	108.2	153.3	82.9	-1.1	0	0	0	cell wall.precursor synthesis.UGD	"UDP-glucose 6-dehydrogenase, putative  similar to ATUGD1/UGD1 (UDP-glucose dehydrogenase 1), UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G26570.1); similar to UDP-glucose 6-dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G39320.1)"
MSGI1_1292	TC8153	135.4	307.6	170.1	175.9	1.2	0	0	0	cell wall	ATC4H (CINNAMATE-4-HYDROXYLASE) Encodes a cinnamate-4-hydroxylase. Identical to Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic acid 4- hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) (CYP73A5) [Arabidopsis Thaliana] (GB:P92994;GB:O049
MSGI1_1292	TC8153	135.4	307.6	170.1	175.9	1.2	0	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.C4H	ATC4H (CINNAMATE-4-HYDROXYLASE) Encodes a cinnamate-4-hydroxylase. Identical to Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic acid 4- hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) (CYP73A5) [Arabidopsis Thaliana] (GB:P92994;GB:O049
MSGI1_545	TC8157	48.7	44.5	20.9	34.8	0	0	1.2	0	RNA.regulation of transcription.Psudo ARR transcription factor family	APRR2 (PSEUDO-RESPONSE REGULATOR 2); transcription factor Encodes pseudo-response regulator 2 (APRR2). Identical to Two-component response regulator-like APRR2 (Pseudo-response regulator 2) (TOC2 protein) (APRR2) [Arabidopsis Thaliana] (GB:Q6LA43;GB:O497
MSGI1_629	TC8159	83.5	81.9	15.6	34.5	0	0	2.4	1.2	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G68400.1); similar to putative receptor kinase [Malus x domestica] (GB:ABA82081.1); similar"
MSGI1_629	TC8159	83.5	81.9	15.6	34.5	0	0	2.4	1.2	signalling.receptor kinases.leucine rich repeat III	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G68400.1); similar to putative receptor kinase [Malus x domestica] (GB:ABA82081.1); similar"
MSGI1_629	TC8159	83.5	81.9	15.6	34.5	0	0	2.4	1.2	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_1196	TC8160	14	48.3	77.6	93.9	1.8	0	-2.5	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1); hydrolase, hydrolyzing O-glycosyl compounds  Identical to Probable glycosyltransferase At1g55740 (EC 2.4.1.-) [Arabidopsis Thaliana] (GB:Q84VX0;GB:Q9LFZ7); similar to ATSIP2 (ARABIDOPSIS THALIANA SEED IMBI"
MSGI1_11106	TC8161	10.7	25.2	39.4	41.1	0	0	-1.9	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1); hydrolase, hydrolyzing O-glycosyl compounds  Identical to Probable glycosyltransferase At1g55740 (EC 2.4.1.-) [Arabidopsis Thaliana] (GB:Q84VX0;GB:Q9LFZ7); similar to ATSIP2 (ARABIDOPSIS THALIANA SEED IMBI"
MSGI1_35955	TC8162	11.8	42.5	21.6	26.5	1.8	0	0	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1); hydrolase, hydrolyzing O-glycosyl compounds  Identical to Probable glycosyltransferase At1g55740 (EC 2.4.1.-) [Arabidopsis Thaliana] (GB:Q84VX0;GB:Q9LFZ7); similar to ATSIP2 (ARABIDOPSIS THALIANA SEED IMBI"
MSGI1_11814	TC8167	157.4	97.8	105.2	256.4	0	1.3	0	-1.4	stress.abiotic.unspecified	Bet v I allergen family protein  similar to Bet v I allergen family protein [Arabidopsis thaliana] (TAIR:AT5G28000.1); similar to major latex-like protein [Prunus persica] (GB:AAK14060.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916)
MSGI1_18152	TC8168	4.3	3.8	11.6	51.3	0	2.1	0	-3.8	stress.abiotic.unspecified	Bet v I allergen family protein  similar to Bet v I allergen family protein [Arabidopsis thaliana] (TAIR:AT5G28000.1); similar to major latex-like protein [Prunus persica] (GB:AAK14060.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916)
MSGI1_28633	TC8169	79.3	96.3	14.1	41.3	0	1.6	2.5	1.2	stress.abiotic.unspecified	Bet v I allergen family protein  Identical to MLP-like protein 28 (MLP28) [Arabidopsis Thaliana] (GB:Q9SSK9); similar to MLP34 (MLP-LIKE PROTEIN 34) [Arabidopsis thaliana] (TAIR:AT1G70850.3); similar to major latex-like protein [Prunus persica] (GB:AAK140
MSGI1_12446	TC8170	132.4	170.1	159.2	758.6	0	2.3	0	-2.2	stress.abiotic.unspecified	major latex protein-related / MLP-related  Identical to MLP-like protein 43 (MLP43) [Arabidopsis Thaliana] (GB:Q9SSK5); similar to MLP28 (MLP-LIKE PROTEIN 28) [Arabidopsis thaliana] (TAIR:AT1G70830.3); similar to major latex-like protein [Prunus persica]
MSGI1_11347	TC8171	45.8	33	156.3	145.7	0	0	-1.8	-2.1	stress.abiotic.unspecified	major latex protein-related / MLP-related  Identical to MLP-like protein 43 (MLP43) [Arabidopsis Thaliana] (GB:Q9SSK5); similar to MLP28 (MLP-LIKE PROTEIN 28) [Arabidopsis thaliana] (TAIR:AT1G70830.3); similar to major latex-like protein [Prunus persica]
MSGI1_1945	TC8172	6.2	47.4	60.1	52.3	2.9	0	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_19980	TC8173	47.8	163.9	196	153.4	1.8	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_3065	TC8174	23.3	81.6	117.3	92.4	1.8	0	-2.3	0	not assigned.unknown	not assigned.unknown
MSGI1_522	TC8175	18.2	47.1	58.7	49.4	1.4	0	-1.7	0	stress.biotic	"ADR1-L1 (ADR1-LIKE 1); ATP binding / protein binding  Identical to Probable disease resistance protein At4g33300 [Arabidopsis Thaliana] (GB:Q9SZA7;GB:Q56WJ3); similar to ADR1-L2 (ADR1-LIKE 2), ATP binding / nucleoside-triphosphatase/ nucleotide binding /"
MSGI1_3537	TC8179	34.1	18.4	44	61.3	0	0	0	-1.7	"misc.oxidases - copper, flavone etc."	"AT-AER (ALKENAL REDUCTASE); 2-alkenal reductase encodes a 2-alkenal reductase (EC 1.3.1.74), plays a key role in the detoxification of reactive carbonyls Identical to Probable NADP-dependent oxidoreductase P1 (EC 1.3.1.74) (P1) [Arabidopsis Thaliana] (GB"
MSGI1_3775	TC8181	20.6	51.2	56.8	73	1.3	0	-1.5	0	"misc.oxidases - copper, flavone etc."	"NADP-dependent oxidoreductase, putative  similar to NADP-dependent oxidoreductase, putative [Arabidopsis thaliana] (TAIR:AT5G17000.1); similar to AT-AER (ALKENAL REDUCTASE), 2-alkenal reductase [Arabidopsis thaliana] (TAIR:AT5G16970.1); similar to allyl"
MSGI1_193	TC8183	45.3	52.9	78.4	26.7	0	-1.6	0	0	cell.organisation	"CIP7 (COP1-INTERACTING PROTEIN 7) Positive regulator of light-regulated genes. Novel nuclear protein which requires light for its high level expression. similar to disease resistance protein (TIR class), putative [Arabidopsis thaliana] (TAIR:AT1G61100.1)"
MSGI1_18875	TC8184	11.6	13.8	35.5	9.5	0	-1.9	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_2950	TC8186	126.7	64.3	171.9	74.5	0	-1.2	0	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"(1-4)-beta-mannan endohydrolase, putative  similar to (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] (TAIR:AT3G10890.1); similar to hypothetical protein [Thellun (GB:ABB45852.1); contains InterPro domain Glycoside hydrolase, family 5; ("
MSGI1_1139	TC8190	300.4	478.3	283	1716.1	0	2.6	0	-1.8	major CHO metabolism.degradation.starch.starch cleavage	"ATBETA-AMY (BETA-AMYLASE); beta-amylase cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. Identical to Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (BMY"
MSGI1_2051	TC8197	130.1	127.1	47.6	114.1	0	1.3	1.5	0	cell wall.precursor synthesis.NDP sugar pyrophosphorylase.GDP mannose	"CYT1 (CYTOKINESIS DEFECTIVE 1); nucleotidyltransferase Encodes a GDP-mannose pyrophosphorylase/ mannose-1-pyrophosphatase. This enzyme provides GDP-mannose, which is used for cell wall carbohydrate biosynthesis and protein glycosylation as well as for as"
MSGI1_604	TC8198	52.2	113.5	59.2	97.6	1.1	0	0	0	signalling.light	"CRY1 (CRYPTOCHROME 1, OUT OF PHASE 2) Encodes a flavin-type blue-light photoreceptor with ATP binding and autophosphorylation activity. The photoreceptor may be involved in electron transport. Mutant phenotype displays a blue light-dependent inhibition o"
MSGI1_2614	TC8200	89.9	43.3	66.6	96.7	-1.1	0	0	-1.2	redox.ascorbate and glutathione.ascorbate.GME	"GME (GDP-D-MANNOSE 3',5'-EPIMERASE); GDP-mannose 3,5-epimerase/ NAD binding / catalytic Encodes a protein with GDP-D-mannose 3',5'-epimerase activity.  The enzyme is involved in ascorbate biosynthesis. It catalyzes the conversion of GDP-D-mannose to GDP-"
MSGI1_1811	TC8201	157.5	110.1	62	164.7	0	1.4	1.3	0	redox.ascorbate and glutathione.ascorbate.GME	"GME (GDP-D-MANNOSE 3',5'-EPIMERASE); GDP-mannose 3,5-epimerase/ NAD binding / catalytic Encodes a protein with GDP-D-mannose 3',5'-epimerase activity.  The enzyme is involved in ascorbate biosynthesis. It catalyzes the conversion of GDP-D-mannose to GDP-"
MSGI1_422	TC8205	71.3	24.1	39.6	29.6	-1.6	0	0	0	lipid metabolism.lipid degradation.lysophospholipases.glycerophosphodiester phosphodiesterase	MRH5/SHV3 (morphogenesis of root hair 5); glycerophosphodiester phosphodiesterase/ kinase Involved in root hair development. Identical to Probable glycerophosphoryl diester phosphodiesterase 2 precursor (EC 3.1.4.46) (GPDL2) [Arabidopsis Thaliana] (GB:Q9S
MSGI1_20696	TC8206	194.1	99.5	42.6	61	0	0	2.2	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	"ELI3-2 (ELICITOR-ACTIVATED GENE 3) Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria.  Though similar to mannitol dehydrogenases, this enzyme does not have"
MSGI1_13974	TC8207	55.3	5.3	22.3	9.3	-3.4	0	1.3	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	ELI3-1 (ELICITOR-ACTIVATED GENE 3); oxidoreductase/ zinc ion binding Encodes a putative mannitol dehydrogenase. Identical to Probable mannitol dehydrogenase 1 (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase 1) (ELI3-1) [Arabidopsis Thaliana] (GB:Q02
MSGI1_14610	TC8208	62.7	11.1	39.3	15.4	-2.5	0	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	ELI3-1 (ELICITOR-ACTIVATED GENE 3); oxidoreductase/ zinc ion binding Encodes a putative mannitol dehydrogenase. Identical to Probable mannitol dehydrogenase 1 (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase 1) (ELI3-1) [Arabidopsis Thaliana] (GB:Q02
MSGI1_3432	TC8209	102.9	47.8	46.3	37.6	-1.1	0	1.2	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	ELI3-1 (ELICITOR-ACTIVATED GENE 3); oxidoreductase/ zinc ion binding Encodes a putative mannitol dehydrogenase. Identical to Probable mannitol dehydrogenase 1 (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase 1) (ELI3-1) [Arabidopsis Thaliana] (GB:Q02
MSGI1_3963	TC8217	10	45.1	23.1	57.2	2.2	1.3	0	0	"misc.beta 1,3 glucan hydrolases"	"glycosyl hydrolase family 17 protein  similar to BG1 (BETA-1,3-GLUCANASE 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G57270.1); similar to beta-1,3-glucanase [Hevea brasiliensis] (GB:ABG49448.1); contains InterPro doma"
MSGI1_3963	TC8217	10	45.1	23.1	57.2	2.2	1.3	0	0	cell wall	"glycosyl hydrolase family 17 protein  similar to BG1 (BETA-1,3-GLUCANASE 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G57270.1); similar to beta-1,3-glucanase [Hevea brasiliensis] (GB:ABG49448.1); contains InterPro doma"
MSGI1_5705	TC8218	738.7	292.8	380.2	185.1	-1.3	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_8791	TC8219	96.4	75.7	5.1	16	0	0	4.2	2.2	protein.synthesis.misc ribososomal protein	40S ribosomal protein S7 (RPS7A)  Identical to 40S ribosomal protein S7-1 (RPS7A) [Arabidopsis Thaliana] (GB:Q9C514); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.2); similar to 40S ribosomal protein S7-like protein [
MSGI1_116250	TC8220	36.6	24.5	0	0	0	0	6.2	5.6	protein.synthesis.misc ribososomal protein	40S ribosomal protein S7 (RPS7A)  Identical to 40S ribosomal protein S7-1 (RPS7A) [Arabidopsis Thaliana] (GB:Q9C514); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.2); similar to 40S ribosomal protein S7-like protein [
MSGI1_10075	TC8221	223.6	101.5	50.2	75.9	-1.1	0	2.2	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S7 (RPS7A)  Identical to 40S ribosomal protein S7-1 (RPS7A) [Arabidopsis Thaliana] (GB:Q9C514); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.2); similar to 40S ribosomal protein S7-like protein [
MSGI1_68561	TC8222	31.6	20.2	0.4	0	0	0	6.3	5.3	protein.synthesis.misc ribososomal protein	40S ribosomal protein S7 (RPS7A)  Identical to 40S ribosomal protein S7-1 (RPS7A) [Arabidopsis Thaliana] (GB:Q9C514); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.2); similar to 40S ribosomal protein S7-like protein [
MSGI1_7402	TC8229	229.1	131.6	44.2	59.8	0	0	2.4	1.1	signalling.G-proteins	"Ran-binding protein 1b (RanBP1b)  Identical to Ran-binding protein 1 homolog b (RANBP1B) [Arabidopsis Thaliana] (GB:Q8RWG8;GB:O04150;GB:O64739); similar to SIRANBP (Ran-binding protein 1a), Ran GTPase binding [Arabidopsis thaliana] (TAIR:AT1G07140.1); si"
MSGI1_13352	TC8231	198.7	77.1	62.1	89.8	-1.4	0	1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_15608	TC8232	20.9	11.6	51.5	50.8	0	0	-1.3	-2.1	PS.lightreaction.photosystem II.PSII polypeptide subunits	photosystem II 5 kD protein  similar to PSBTN (photosystem II subunit T) [Arabidopsis thaliana] (TAIR:AT3G21055.1); similar to unknown [Brassica rapa] (GB:ABD91572.1)
MSGI1_60403	TC8233	80	35.7	60.3	67.8	-1.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_53021	TC8234	0	0	83.3	81.7	0	0	-7.4	-7.4	not assigned.unknown	not assigned.unknown
MSGI1_12312	TC8235	0	0	69.5	97.5	0	0	-7.1	-7.6	not assigned.unknown	not assigned.unknown
MSGI1_10821	TC8237	1.5	1.8	21.2	47.8	0	1.2	-3.8	-4.7	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G04790.1); similar to zinc finger family protein, putative, expressed [Oryza sativa (japonica cultivar-gro"
MSGI1_47808	TC8238	0	0	38.6	39.1	0	0	-6.3	-6.3	not assigned.unknown	not assigned.unknown
MSGI1_23145	TC8239	0	0.3	56.3	55.6	0	0	-6.8	-7.5	protein.degradation.ubiquitin.E3.RING	"zinc finger (C3HC4-type RING finger) family protein  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G04790.1); similar to zinc finger family protein, putative, expressed [Oryza sativa (japonica cultivar-gro"
MSGI1_4763	TC8240	251	140	962.3	258.6	0	-1.9	-1.9	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CCR1	cinnamoyl-CoA reductase family  similar to cinnamoyl-CoA reductase family [Arabidopsis thaliana] (TAIR:AT2G02400.1); similar to NmrA-like family protein [Solanum demissum] (GB:AAT39306.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (Int
MSGI1_2335	TC8243	631.3	2.3	79.5	3	-8.1	-4.7	3	0	cell wall.pectin*esterases.PME	"pectin methylesterase, putative  similar to pectin methylesterase, putative [Arabidopsis thaliana] (TAIR:AT1G11590.1); similar to pectin methylesterase [Sesbania rostrata] (GB:CAD29733.1); contains InterPro domain Virulence factor, pectin lyase fold; (In"
MSGI1_3297	TC8244	9.8	5.6	34.4	39	0	0	-1.8	-2.8	cell wall.pectin*esterases.PME	"pectin methylesterase, putative  similar to pectin methylesterase, putative [Arabidopsis thaliana] (TAIR:AT1G11590.1); similar to pectin methylesterase [Sesbania rostrata] (GB:CAD29733.1); contains InterPro domain Virulence factor, pectin lyase fold; (In"
MSGI1_8167	TC8247	10.6	10.3	0.1	0.2	0	0	6.7	5.7	protein.degradation.serine protease	"DEGP1 (DEGP PROTEASE 1); serine-type peptidase Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lum"
MSGI1_6251	TC8249	53.9	19.2	23.3	28.9	-1.5	0	1.2	0	protein assembly and cofactor ligation	"HCF136 (High chlorophyll fluorescence 136) encodes a stability and/or assembly factor of photosystem II Identical to Photosystem II stability/assembly factor HCF136, chloroplast precursor (HCF136) [Arabidopsis Thaliana] (GB:O82660); similar to Photosyste"
MSGI1_9884	TC8251	183.4	79.4	45.8	61.6	-1.2	0	2	0	protein.synthesis.misc ribososomal protein	"RPS18C (S18 RIBOSOMAL PROTEIN); structural constituent of ribosome encodes a ribosomal protein S18C, a constituent of the small subunit of the ribosomal complex Identical to 40S ribosomal protein S18 (RPS18C) [Arabidopsis Thaliana] (GB:P34788;GB:Q94K22);"
MSGI1_19553	TC8252	189.1	178.8	90.9	121.2	0	0	1.1	0	protein.synthesis.misc ribososomal protein	"RPS18C (S18 RIBOSOMAL PROTEIN); structural constituent of ribosome encodes a ribosomal protein S18C, a constituent of the small subunit of the ribosomal complex Identical to 40S ribosomal protein S18 (RPS18C) [Arabidopsis Thaliana] (GB:P34788;GB:Q94K22);"
MSGI1_41282	TC8253	0.1	0	39	61.3	0	0	-8.6	-6.9	protein.synthesis.misc ribososomal protein	"RPS18C (S18 RIBOSOMAL PROTEIN); structural constituent of ribosome encodes a ribosomal protein S18C, a constituent of the small subunit of the ribosomal complex Identical to 40S ribosomal protein S18 (RPS18C) [Arabidopsis Thaliana] (GB:P34788;GB:Q94K22);"
MSGI1_90	TC8256	29.3	38.2	42.2	15.6	0	-1.4	0	0	signalling.calcium	"calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)  Identical to Putative calcium-transporting ATPase 12, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 12) (ACA12) [Arabidopsis Thaliana] (GB:Q9LY77);"
MSGI1_3043	TC8257	135.2	69	148.8	141.6	0	0	0	-1	PS.calvin cyle.seduheptulose bisphosphatase	"SBPASE (sedoheptulose-bisphosphatase); phosphoric ester hydrolase Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate u"
MSGI1_1806	TC826	211.1	76.2	118.5	170.4	-1.5	0	0	-1.2	PS.calvin cyle.phosphoglycerate kinase	"phosphoglycerate kinase, putative  similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2); similar to PGK1 (PHOSPHOGLYCERATE KINASE 1), phosphoglycerate kinase [Arabidopsis thaliana] (TAIR:AT3G12780.1); similar to chloroplast"
MSGI1_71651	TC8265	0.3	0.6	10.6	10.7	0	0	-5.1	0	stress.biotic	"disease resistance protein (CC-NBS-LRR class), putative  Identical to Putative disease resistance RPP13-like protein 4 (RPP13L4) [Arabidopsis Thaliana] (GB:Q38834;GB:Q9SVK4); similar to RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8) [Arabidopsis thaliana"
MSGI1_1300	TC8277	72.4	40.8	36.4	47.7	0	0	1	0	TCA / org. transformation.TCA.pyruvate DH.E2	"dihydrolipoamide S-acetyltransferase, putative  Identical to Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.12) (Pyruvate dehydrogenase complex E2 subunit 2) (PDCE2) (E2) (Di"
MSGI1_3916	TC8280	53	21.6	138.1	25.2	-1.3	-2.5	-1.4	0	secondary metabolism.flavonoids.chalcones	"aldo/keto reductase, putative  similar to aldo/keto reductase, putative [Arabidopsis thaliana] (TAIR:AT1G59950.1); similar to reductase 2 [Hydrangea macrophylla] (GB:AAR89808.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395)"
MSGI1_3028	TC8281	163.2	154.3	82.6	111.3	0	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_8808	TC8282	1.1	0.5	22.5	48.3	0	0	-4.4	-6.6	not assigned.unknown	not assigned.unknown
MSGI1_53301	TC8283	0	0	21.7	26.9	0	0	-5.4	-5.7	not assigned.unknown	not assigned.unknown
MSGI1_24893	TC8284	99.4	117.6	0	0	0	0	7.6	7.9	not assigned.unknown	not assigned.unknown
MSGI1_1265	TC8288	69	66.9	101.9	44.2	0	-1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_2609	TC8291	111.1	138.8	409.8	238.8	0	0	-1.9	0	"metal handling.binding, chelation and storage"	"ATFER2 (FERRITIN 2); ferric iron binding  Identical to Ferritin-2, chloroplast precursor (EC 1.16.3.1) (FER2) [Arabidopsis Thaliana] (GB:Q9SRL5;GB:Q42288;GB:Q8L9N6;GB:Q8WHW4); similar to ATFER4 (FERRITIN 4), ferric iron binding [Arabidopsis thaliana] (TA"
MSGI1_1567	TC8292	111.9	168.5	260.9	162.9	0	0	-1.2	0	cell wall	"IRX12/LAC4 (laccase 4); copper ion binding / oxidoreductase Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem ph"
MSGI1_1567	TC8292	111.9	168.5	260.9	162.9	0	0	-1.2	0	secondary metabolism.simple phenols	"IRX12/LAC4 (laccase 4); copper ion binding / oxidoreductase Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem ph"
MSGI1_40946	TC8293	58.4	93.3	165.6	90.7	0	0	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_28	TC8296	31.6	101.9	65.5	125.1	1.7	0	0	0	transport.ABC transporters and multidrug resistance systems	"PDR8/PEN3 (PLEIOTROPIC DRUG RESISTANCE8); ATPase, coupled to transmembrane movement of substances ATP binding cassette transporter. Localized to the plasma membrane in uninfected cells. In infected leaves, the protein concentrated at  infection sites. Co"
MSGI1_1429	TC8297	20.3	19.5	64.1	19.5	0	-1.7	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_1668	TC8300	12.2	60.3	32.2	59.9	2.3	0	0	0	hormone metabolism.gibberelin.synthesis-degradation.ent-kaurenoic acid hydroxylase/oxygenase	"CYP88A3 (ENT-KAURENOIC ACID HYDROXYLASE 1); oxygen binding Encodes an ent-kaurenoic acid hydroxylase, a  member of the CYP88A cytochrome p450 family. Identical to Ent-kaurenoic acid oxidase 1 (EC 1.14.13.79) (AtKAO1) (Cytochrome P450 88A3) (KAO1) [Arabid"
MSGI1_1016	TC8308	96.4	52.5	45.3	41	0	0	1.1	0	cell wall.pectin*esterases.misc	pectinesterase family protein  similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT3G49220.1); similar to pectinesterase inhibitor [Lycoris aurea] (GB:ABJ99595.1); similar to Pectinesterase; Pectinesterase inhibitor [Medicago truncatu
MSGI1_2056	TC8309	230.7	163	97.4	168.7	0	0	1.2	0	protein.synthesis.elongation	"elongation factor 1B-gamma, putative / eEF-1B gamma, putative  Identical to Probable elongation factor 1-gamma 2 (EF-1-gamma 2) (eEF-1B gamma 2) [Arabidopsis Thaliana] (GB:Q9FVT2;GB:Q94C85); similar to elongation factor 1B-gamma, putative / eEF-1B gamma,"
MSGI1_2122	TC8312	112.4	176.9	132.5	67.9	0	0	0	1.4	cell wall.precursor synthesis.GAE	"GAE1 (UDP-D-GLUCURONATE 4-EPIMERASE 1); UDP-glucuronate 4-epimerase/ catalytic UDP-D-glucuronate 4-epimerase similar to GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2), catalytic [Arabidopsis thaliana] (TAIR:AT1G02000.1); similar to UDP-glucuronic acid 4-epimeras"
MSGI1_49576	TC8316	77.9	44.6	21.1	25.7	0	0	1.9	0	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2A.3 (HTA2) [Arabidopsis Thaliana] (GB:O81826;GB:Q8L8Z9); similar to RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5), DNA binding [Arabidopsis thaliana] (TAIR:AT5G54640.1); similar to Protein H2A.7"
MSGI1_2631	TC8319	51.3	13.8	97.3	15.1	-1.9	-2.7	0	0	cell wall	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_2631	TC8319	51.3	13.8	97.3	15.1	-1.9	-2.7	0	0	secondary metabolism.simple phenols	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_1540	TC8321	195.8	367.9	182.4	470.7	0	1.4	0	0	S-assimilation.APS	"APS1 (ATP sulfurylase 3) encodes ATP sulfurylase, the first enzyme in the sulfate assimilation pathway of Arabidopsis. similar to APS3 (ATP sulfurylase 2), sulfate adenylyltransferase (ATP) [Arabidopsis thaliana] (TAIR:AT4G14680.1); similar to APS4 [Arab"
MSGI1_6368	TC8332	112.3	60.5	41.4	74	0	0	1.4	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S9 (RPS9C)  Identical to 40S ribosomal protein S9-2 (RPS9C) [Arabidopsis Thaliana] (GB:Q9FLF0); similar to 40S ribosomal protein S9 (RPS9B) [Arabidopsis thaliana] (TAIR:AT5G15200.1); similar to 40S ribosomal protein S9 [Catharanthus
MSGI1_8824	TC8333	118.7	50.1	27.1	66.9	-1.2	1.3	2.1	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S9 (RPS9C)  Identical to 40S ribosomal protein S9-2 (RPS9C) [Arabidopsis Thaliana] (GB:Q9FLF0); similar to 40S ribosomal protein S9 (RPS9B) [Arabidopsis thaliana] (TAIR:AT5G15200.1); similar to 40S ribosomal protein S9 [Catharanthus
MSGI1_1168	TC8337	3.6	40.7	2.8	4.3	3.5	0	0	3.2	protein.degradation	"prolyl oligopeptidase  similar to prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G20380.1); similar to prolyl endopeptidase [Homo sapiens] (GB:NP_002717.3); simila"
MSGI1_10274	TC8339	9.8	4.1	2150.6	17.8	0	-6.9	-7.8	0	not assigned.unknown	not assigned.unknown
MSGI1_2403	TC834	125.3	38.7	71.7	90.4	-1.7	0	0	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_19500	TC8340	10	2.4	281.3	32.4	0	-3.1	-4.8	-3.8	not assigned.unknown	not assigned.unknown
MSGI1_8341	TC8341	10.3	2.3	103.8	7.4	0	-3.8	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_9975	TC8342	0.2	0.1	459.8	3.7	0	-7	-11.2	0	not assigned.unknown	not assigned.unknown
MSGI1_1330	TC8343	230.3	95.4	51.7	33.9	-1.3	0	2.2	1.5	cell wall.degradation.pectate lyases and polygalacturonases	pectate lyase family protein  Identical to Probable pectate lyase 1 precursor (EC 4.2.2.2) (Pectate lyase A1) [Arabidopsis Thaliana] (GB:Q940Q1;GB:O23017;GB:O23666); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G48900.1); simil
MSGI1_18736	TC8344	36	66.5	26.2	91.2	0	1.8	0	0	not assigned.unknown	not assigned.unknown
MSGI1_21734	TC8345	160.5	36.3	114.8	79.7	-2.1	0	0	-1.1	not assigned.unknown	not assigned.unknown
MSGI1_54360	TC8346	59.5	79.9	27.7	123	0	2.2	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_18801	TC8347	20.1	39.4	23.2	66.8	0	1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_308	TC8351	197.3	126.2	93.6	120.9	0	0	1.1	0	stress.abiotic.heat	"SHD (SHEPHERD); ATP binding encodes an ortholog of GRP94, an ER-resident HSP90-like protein and is involved in regulation of meristem size and organization. Single and double mutant analyses suggest that SHD may be required for the correct folding and/or"
MSGI1_7999	TC8353	72.8	43.9	123.4	114.1	0	0	0	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_11225	TC8354	47.5	38.9	112.5	113	0	0	-1.2	-1.5	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_36200	TC8355	12.1	134.2	185.3	166.2	3.5	0	-3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_21246	TC8356	16.4	416.7	287.7	1723.9	4.7	2.6	-4.1	-2	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_16190	TC8357	39.7	261.9	349.6	411.3	2.7	0	-3.1	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_4197	TC8362	24.6	33.1	77	40.7	0	0	-1.6	0	misc.short chain dehydrogenase/reductase (SDR)	short-chain dehydrogenase/reductase (SDR) family protein  similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G04900.1); similar to Os01g0227100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042468.1);
MSGI1_3134	TC8369	82.7	143.1	239.3	225.4	0	0	-1.5	0	protein.degradation.cysteine protease	"cathepsin B-like cysteine protease, putative  similar to cathepsin B-like cysteine protease, putative [Arabidopsis thaliana] (TAIR:AT1G02300.1); similar to Peptidase C1A, papain; Somatotropin hormone [Medicago truncatula] (GB:ABD32840.1); contains InterP"
MSGI1_5243	TC837	195.9	99.7	182.8	227	0	0	0	-1.2	PS.lightreaction.photosystem II.LHC-II	"LHCB4.3 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II Identical to Chlorophyll a-b binding protein CP29.3, chloroplast precursor (LHCII protein 4.3) (LHCB4.3) (LHCB4.3) [Arabidop"
MSGI1_5555	TC8371	276.5	81.2	91.2	78.2	-1.8	0	1.6	0	cell.organisation	"ACT7 (actin 7) Member of Actin gene family.Mutants are defective in germination and root growth. Identical to Actin-7 (Actin-2) (ACT7) [Arabidopsis Thaliana] (GB:P53492;GB:P53495); similar to ACT3 (ACTIN 3), structural constituent of cytoskeleton [Arabid"
MSGI1_113465	TC8373	17.6	29.3	10.5	5.3	0	0	0	2.5	not assigned.unknown	not assigned.unknown
MSGI1_5947	TC8374	49.8	67.8	109	67.2	0	0	-1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_45491	TC8375	15.9	21.8	0	0	0	0	5	5.4	not assigned.unknown	not assigned.unknown
MSGI1_6649	TC8381	548.5	364.1	242	423.5	0	0	1.2	0	protein.synthesis.misc ribososomal protein	EMB2386 (EMBRYO DEFECTIVE 2386); structural constituent of ribosome  Identical to 60S ribosomal protein L19-1 (RPL19A) [Arabidopsis Thaliana] (GB:Q9SRX2); similar to 60S ribosomal protein L19 (RPL19C) [Arabidopsis thaliana] (TAIR:AT4G02230.1); similar to
MSGI1_1579	TC8392	76.7	66.9	27	44.1	0	0	1.5	0	protein.folding	ATTCP-1 (Arabidopsis thaliana T-complex protein 1 alpha subunit); ATP binding / protein binding / unfolded protein binding Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). Identical to T-complex protein
MSGI1_13457	TC8393	36.8	35.3	9.7	17.1	0	0	1.9	0	protein.folding	ATTCP-1 (Arabidopsis thaliana T-complex protein 1 alpha subunit); ATP binding / protein binding / unfolded protein binding Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). Identical to T-complex protein
MSGI1_29544	TC8394	20.6	29.7	15.2	8.3	0	0	0	1.8	protein.folding	ATTCP-1 (Arabidopsis thaliana T-complex protein 1 alpha subunit); ATP binding / protein binding / unfolded protein binding Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). Identical to T-complex protein
MSGI1_3468	TC8395	57.3	117.1	56.5	71.6	1	0	0	0	signalling.calcium	"IQD10 (IQ-domain 10); calmodulin binding  similar to IQD9 (IQ-domain 9), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G33990.1); similar to Os06g0155300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056849.1); similar to IQ calmodulin-binding"
MSGI1_6422	TC8396	68.6	82.2	45.3	91.8	0	1	0	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	ILR3 (IAA-LEUCINE RESISTANT3); DNA binding / transcription factor  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G51070.1); similar to Prefoldin; Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE93168.1);
MSGI1_103	TC8402	10.2	27.9	36.3	35.4	0	0	-1.8	0	protein.degradation.ubiquitin.E3.HECT	UPL4 (ubiquitin-protein ligase 4) encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. similar to KAK (KAKTUS) [Arabidopsis thaliana] (TAIR:AT4G38600.1); similar to unknown protein [Oryza sativa
MSGI1_943	TC8405	138.8	36.4	77.7	56.9	-1.9	0	0	0	cell wall.cellulose synthesis	"ATCSLA02 (Cellulose synthase-like A2); transferase, transferring glycosyl groups encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein similar to ATCSLA15 (Cellulose synthase-like A15), transferase, transfer"
MSGI1_701	TC8406	36.6	48.7	81.1	57.6	0	0	-1.1	0	lipid metabolism.FA synthesis and FA elongation.long chain fatty acid CoA ligase	"long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)  similar to LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9), long-chain-fatty-acid-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G77590.1); similar to Os05g031"
MSGI1_47581	TC8411	4.1	2.9	34.2	15.1	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_416	TC8414	369.3	102.6	104.1	245.4	-1.8	1.2	1.8	-1.3	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipo"
MSGI1_5050	TC8415	86.6	318.9	173.6	223.3	1.9	0	0	0	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	ATEBP/RAP2.3 (RELATED TO AP2 3); DNA binding / protein binding / transcription factor/ transcriptional activator Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3).  The
MSGI1_7052	TC8416	65.2	44.7	27.1	45.8	0	0	1.3	0	protein.synthesis.elongation	"elongation factor 1-beta / EF-1-beta  Identical to Elongation factor 1-delta 1 (EF-1-delta 1) (Elongation factor 1B-beta 1) (eEF-1B beta 1) [Arabidopsis Thaliana] (GB:P48006); similar to elongation factor 1-beta, putative / EF-1-beta, putative [Arabidops"
MSGI1_1210	TC842	188.3	154.7	78.7	289.5	0	1.9	1.3	0	amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoglycerate dehydrogenase	"PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE); phosphoglycerate dehydrogenase encodes a 3-Phosphoglycerate dehydrogenase Identical to D-3-phosphoglycerate dehydrogenase, chloroplast precursor (EC 1.1.1.95) (3-PGDH) [Arabidopsis Thaliana] (GB:O04130); similar t"
MSGI1_6597	TC8423	321.8	237	107.7	222.5	0	1	1.6	0	protein.synthesis.misc ribososomal protein	60S acidic ribosomal protein P0 (RPP0A)  Identical to 60S acidic ribosomal protein P0-1 (RPP0A) [Arabidopsis Thaliana] (GB:O04204); similar to 60S acidic ribosomal protein P0 (RPP0B) [Arabidopsis thaliana] (TAIR:AT3G09200.1); similar to Ribosomal protein
MSGI1_20452	TC8424	320.5	228.3	65.1	183	0	1.5	2.3	0	protein.synthesis.misc ribososomal protein	60S acidic ribosomal protein P0 (RPP0C)  Identical to 60S acidic ribosomal protein P0-3 (RPP0C) [Arabidopsis Thaliana] (GB:P57691;GB:Q8LAM3); similar to 60S acidic ribosomal protein P0 (RPP0B) [Arabidopsis thaliana] (TAIR:AT3G09200.1); similar to 60S acid
MSGI1_2045	TC8427	51.9	52.5	23.5	50.6	0	1.1	1.1	0	cell wall.cellulose synthesis.cellulose synthase	"ATCSLG1 (Cellulose synthase-like G1); transferase/ transferase, transferring glycosyl groups encodes a protein similar to cellulose synthase similar to ATCSLG3 (Cellulose synthase-like G3), transferase/ transferase, transferring glycosyl groups [Arabidop"
MSGI1_2071	TC8433	102.6	50.2	64.7	98.9	-1	0	0	0	cell wall	"chloroplast nucleoid DNA-binding protein, putative  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G10760.1); similar to CND41, chloroplast nucleoid DNA binding protein [Nicotiana tabacum] (GB:BAA22813.1); contains InterPro d"
MSGI1_2071	TC8433	102.6	50.2	64.7	98.9	-1	0	0	0	RNA.regulation of transcription.unclassified	"chloroplast nucleoid DNA-binding protein, putative  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G10760.1); similar to CND41, chloroplast nucleoid DNA binding protein [Nicotiana tabacum] (GB:BAA22813.1); contains InterPro d"
MSGI1_29636	TC8440	37.6	44.2	12.6	27.6	0	0	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_4301	TC8442	43.8	106.9	79.1	108.2	1.3	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_436	TC8445	13	15.2	32.4	47.7	0	0	0	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_85715	TC8448	19.3	25.6	1.1	1.4	0	0	4.1	4.2	not assigned.unknown	not assigned.unknown
MSGI1_1018	TC8450	83.1	63.2	34	68.4	0	1	1.3	0	protein.postranslational modification	"T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative  Identical to T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) [Arabidopsis Thaliana] (GB:O04450); similar to chaperonin, putative [Arabidopsi"
MSGI1_1269	TC8456	73.5	31.1	69.6	36.6	-1.2	0	0	0	cell wall	"IRX12/LAC4 (laccase 4); copper ion binding / oxidoreductase Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem ph"
MSGI1_1269	TC8456	73.5	31.1	69.6	36.6	-1.2	0	0	0	secondary metabolism.simple phenols	"IRX12/LAC4 (laccase 4); copper ion binding / oxidoreductase Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem ph"
MSGI1_1844	TC8459	81.2	51.1	39.7	35.2	0	0	1	0	cell wall.precursor synthesis.GAE	"GAE6 (UDP-D-GLUCURONATE 4-EPIMERASE 6); catalytic UDP-D-glucuronate 4-epimerase similar to GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3), catalytic [Arabidopsis thaliana] (TAIR:AT4G00110.1); similar to GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2), catalytic [Arabidop"
MSGI1_32368	TC8461	51.2	170.4	58	25.6	1.7	-1.2	0	2.7	not assigned.unknown	not assigned.unknown
MSGI1_13494	TC8462	40.8	140.7	86.9	53.6	1.8	0	-1.1	1.4	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5); DNA binding / transcription factor/ transcriptional activator encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-5). The protein contains
MSGI1_13494	TC8462	40.8	140.7	86.9	53.6	1.8	0	-1.1	1.4	hormone metabolism.ethylene.signal transduction	ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5); DNA binding / transcription factor/ transcriptional activator encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-5). The protein contains
MSGI1_5284	TC8463	36.2	130.1	69.4	35.9	1.8	0	0	1.9	"RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family"	ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6); DNA binding / transcription factor Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There ar
MSGI1_5284	TC8463	36.2	130.1	69.4	35.9	1.8	0	0	1.9	hormone metabolism.ethylene.signal transduction	ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6); DNA binding / transcription factor Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There ar
MSGI1_15806	TC8465	43.6	121.2	157.4	138.7	1.5	0	-1.9	0	protein.degradation.ubiquitin.E3.SCF.FBOX	kelch repeat-containing F-box family protein  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G24760.1); similar to Os09g0292900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062790.1); similar to kelch repeat-containing F-box-like p
MSGI1_8267	TC8466	24.5	65.3	65.2	74.7	1.4	0	-1.4	0	protein.degradation.ubiquitin.E3.SCF.FBOX	kelch repeat-containing F-box family protein  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G24760.1); similar to Os09g0292900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062790.1); similar to kelch repeat-containing F-box-like p
MSGI1_117278	TC8475	21.7	30.1	0.4	0	0	0	5.8	5.9	not assigned.unknown	not assigned.unknown
MSGI1_158	TC8476	35.8	71.1	285.2	74.8	0	-1.9	-3	0	cell wall	"SUS3; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups Encodes a protein with sucrose synthase activity (SUS3). similar to SUS1 (SUCROSE SYNTHASE 1), UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TA"
MSGI1_158	TC8476	35.8	71.1	285.2	74.8	0	-1.9	-3	0	major CHO metabolism.degradation.sucrose.Susy	"SUS3; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups Encodes a protein with sucrose synthase activity (SUS3). similar to SUS1 (SUCROSE SYNTHASE 1), UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TA"
MSGI1_158	TC8476	35.8	71.1	285.2	74.8	0	-1.9	-3	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_2133	TC8479	48.1	46	104.3	73	0	0	-1.1	0	cell wall	"CIPK11 (SNF1-RELATED PROTEIN KINASE 3.22, SOS3-INTERACTING PROTEIN 4); kinase Encodes a SOS2-like protein kinase that is a member of the CBL-interacting protein kinase family. Identical to CBL-interacting serine/threonine-protein kinase 11 (EC 2.7.11.1)"
MSGI1_2133	TC8479	48.1	46	104.3	73	0	0	-1.1	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_2133	TC8479	48.1	46	104.3	73	0	0	-1.1	0	protein.postranslational modification	"CIPK11 (SNF1-RELATED PROTEIN KINASE 3.22, SOS3-INTERACTING PROTEIN 4); kinase Encodes a SOS2-like protein kinase that is a member of the CBL-interacting protein kinase family. Identical to CBL-interacting serine/threonine-protein kinase 11 (EC 2.7.11.1)"
MSGI1_6174	TC848	102.9	117.1	48.4	187	0	1.9	1.1	0	amino acid metabolism.synthesis.aspartate family.methionine.cystathionine beta-lyase	"MTO1 (METHIONINE OVERACCUMULATION 1) encodes a cystathionine gamma-synthase, which performs the first committed step in methionine biosynthesis. A conserved motif of 13 amino acids in the first exon is required for posttranscriptional autoregulation. Thi"
MSGI1_48896	TC8480	16.5	15.9	33.6	45.2	0	0	0	-1.5	protein.postranslational modification	"CIPK11 (SNF1-RELATED PROTEIN KINASE 3.22, SOS3-INTERACTING PROTEIN 4); kinase Encodes a SOS2-like protein kinase that is a member of the CBL-interacting protein kinase family. Identical to CBL-interacting serine/threonine-protein kinase 11 (EC 2.7.11.1)"
MSGI1_7490	TC8485	64.2	31.8	119.4	25.1	-1	-2.3	0	0	not assigned.unknown	not assigned.unknown
MSGI1_2666	TC8489	51	30.3	68.8	77.5	0	0	0	-1.4	gluconeogenesis.Malate DH	"PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2); malate dehydrogenase encodes a microbody NAD-dependent malate dehydrogenase Identical to Malate dehydrogenase, glyoxysomal precursor (EC 1.1.1.37) (mbNAD-MDH) [Arabidopsis Thaliana] (GB:Q9ZP05); similar to"
MSGI1_2121	TC849	130.7	154.6	73	231.8	0	1.7	0	0	amino acid metabolism.synthesis.aspartate family.methionine.cystathionine beta-lyase	"MTO1 (METHIONINE OVERACCUMULATION 1) encodes a cystathionine gamma-synthase, which performs the first committed step in methionine biosynthesis. A conserved motif of 13 amino acids in the first exon is required for posttranscriptional autoregulation. Thi"
MSGI1_2490	TC8493	72.3	80.1	51.3	107.9	0	1.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_4717	TC8497	31.4	141	59.8	144.8	2.2	1.3	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_4717	TC8497	31.4	141	59.8	144.8	2.2	1.3	0	0	transport.Major Intrinsic Proteins.NIP	NIP6;1 (NOD26-like intrinsic protein 6;1); water channel Similar to gb:D17443 major intrinsic protein from Oryza sativa Identical to Aquaporin NIP6.1 (NOD26-like intrinsic protein 6.1) (NIP6.1) [Arabidopsis Thaliana] (GB:Q9SAI4;GB:Q5PP68); similar to NIP
MSGI1_4717	TC8497	31.4	141	59.8	144.8	2.2	1.3	0	0	cell wall	NIP6;1 (NOD26-like intrinsic protein 6;1); water channel Similar to gb:D17443 major intrinsic protein from Oryza sativa Identical to Aquaporin NIP6.1 (NOD26-like intrinsic protein 6.1) (NIP6.1) [Arabidopsis Thaliana] (GB:Q9SAI4;GB:Q5PP68); similar to NIP
MSGI1_47807	TC8500	5.4	8.4	31.6	21.7	0	0	-2.5	0	OPP.oxidative PP.G6PD	"G6PD5 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 5); glucose-6-phosphate 1-dehydrogenase  Identical to Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 1 (EC 1.1.1.49) (G6PD5) (G6PDH5) (ACG9) [Arabidopsis Thaliana] (GB:Q9LK23;GB:Q8VZD0;GB:Q9SUK0); simila"
MSGI1_6164	TC8507	338.9	2	59.5	1	-7.4	-5.9	2.5	0	cell wall.modification	"ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thalian"
MSGI1_27709	TC8508	36.6	0.4	9.7	0.2	-6.5	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_26213	TC8509	44.1	0.6	13	0.2	-6.2	-6	1.8	0	cell wall.modification	"ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thalian"
MSGI1_36343	TC851	18.5	20.6	55.6	37.6	0	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_1020	TC8513	30.5	64.4	42	42.7	1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_1155	TC8517	26.6	63.8	46.6	46	1.3	0	0	0	RNA.regulation of transcription.GRAS transcription factor family	"SCL5; transcription factor Encodes a scarecrow-like protein (SCL5). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to Putative SCARECROW gene regu"
MSGI1_1155	TC8517	26.6	63.8	46.6	46	1.3	0	0	0	development.unspecified	"SCL5; transcription factor Encodes a scarecrow-like protein (SCL5). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to Putative SCARECROW gene regu"
MSGI1_3111	TC8519	7.3	20.3	10.4	1.7	0	0	0	3.6	not assigned.unknown	not assigned.unknown
MSGI1_2661	TC8520	28.9	109.4	114.9	21.5	1.9	-2.4	-2	2.3	not assigned.unknown	not assigned.unknown
MSGI1_39347	TC8521	3.1	13.3	28.3	4.5	0	-2.7	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_937	TC8524	8.7	33.7	26	62.9	2	1.3	0	0	misc.myrosinases-lectin-jacalin	jacalin lectin family protein  similar to jacalin lectin family protein [Arabidopsis thaliana] (TAIR:AT1G73040.1); similar to Agglutinin (CCA) (GB:P82859); similar to Os01g0775500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044410.1); similar to Os
MSGI1_2784	TC8525	506.5	351.4	226.2	374.6	0	0	1.2	0	glycolysis.aldolase	"fructose-bisphosphate aldolase, putative  similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT2G36460.1); similar to Fructose-bisphosphate aldolase, class-I [Medicago truncatula] (GB:ABE84500.1); contains InterPro domain Fr"
MSGI1_18949	TC8526	186.4	127.9	93.6	163.9	0	0	1	0	glycolysis.aldolase	"fructose-bisphosphate aldolase, putative  similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT2G36460.1); similar to Fructose-bisphosphate aldolase, class-I [Medicago truncatula] (GB:ABE84500.1); contains InterPro domain Fr"
MSGI1_6204	TC8535	410.3	157.6	431.3	209.6	-1.4	0	0	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	"NPQ4 (NONPHOTOCHEMICAL QUENCHING) Encoding PSII-S (CP22), a ubiquitous pigment-binding protein associated with photosystem II (PSII) of higher plants. Involved in nonphotochemical quenching rather than in photosynthesis. Mutant has a normal violaxanthin"
MSGI1_5143	TC854	66.3	80.8	154.5	104.1	0	0	-1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_7929	TC855	5.5	20.7	48	35.3	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_2793	TC8557	479.8	282.8	165.3	327.4	0	1	1.5	0	protein.synthesis.misc ribososomal protein	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome Encodes a cytoplasmic ribosomal protein. Identical to 60S ribosomal protein L3-1 (Protein EMBRYO DEFECTIVE 2207) (ARP1) [Arabidopsis Thaliana] (GB:P17094;GB:O82401;GB:Q42055;GB:Q9
MSGI1_6082	TC8559	98.3	57.4	45	62.1	0	0	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_5704	TC8561	216.3	108.3	80.8	124.8	0	0	1.4	0	TCA / org. transformation.TCA.malate DH	"malate dehydrogenase (NAD), mitochondrial, putative  Identical to Malate dehydrogenase 2, mitochondrial precursor (EC 1.1.1.37) (mNAD- MDH 2) [Arabidopsis Thaliana] (GB:Q9LKA3); similar to malate dehydrogenase (NAD), mitochondrial [Arabidopsis thaliana]"
MSGI1_12083	TC8562	237.5	128.7	118.7	121.6	0	0	1	0	TCA / org. transformation.TCA.malate DH	"malate dehydrogenase (NAD), mitochondrial, putative  Identical to Malate dehydrogenase 2, mitochondrial precursor (EC 1.1.1.37) (mNAD- MDH 2) [Arabidopsis Thaliana] (GB:Q9LKA3); similar to malate dehydrogenase (NAD), mitochondrial [Arabidopsis thaliana]"
MSGI1_5449	TC8564	389.3	300.9	315.9	146.3	0	-1.1	0	1	cell wall.cell wall proteins.AGPs	FLA11 (fasciclin-like arabinogalactan-protein 11)  Identical to Fasciclin-like arabinogalactan protein 11 precursor (FLA11) [Arabidopsis Thaliana] (GB:Q8LEJ6;GB:Q9LYW8); similar to FLA12 (fasciclin-like arabinogalactan-protein 12) [Arabidopsis thaliana] (
MSGI1_1199	TC8565	49.5	28.8	159.9	39	0	-2	-1.7	0	transporter.sugars	"ATINT1 (INOSITOL TRANSPORTER 1); carbohydrate transporter/ sugar porter  Identical to Probable inositol transporter 1 (INT1) [Arabidopsis Thaliana] (GB:Q8VZR6;GB:O22848); similar to ATINT2 (INOSITOL TRANSPORTER 2), carbohydrate transporter/ sugar porter"
MSGI1_5436	TC8568	85.8	177.8	0.5	0.1	1.1	0	7.4	10.8	not assigned.unknown	not assigned.unknown
MSGI1_36495	TC8569	19.9	25.5	2.4	4.1	0	0	3.1	2.6	not assigned.unknown	not assigned.unknown
MSGI1_111287	TC857	56.5	32.1	144.5	143	0	0	-1.4	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_4501	TC8570	20	41.2	114.4	17.3	0	-2.7	-2.5	0	stress.abiotic.heat	"J8; heat shock protein binding / unfolded protein binding J8 mRNA, nuclear gene encoding plastid protein, complete Identical to Chaperone protein dnaJ 8, chloroplast precursor (AtJ8) (AtDjC8) (ATJ8) [Arabidopsis Thaliana] (GB:Q9SAG8;GB:Q9ZSN1); similar t"
MSGI1_2295	TC8572	54.7	48.7	22.8	45.8	0	0	1.3	0	cell wall	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT1G25510.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japoni
MSGI1_2295	TC8572	54.7	48.7	22.8	45.8	0	0	1.3	0	RNA.regulation of transcription.unclassified	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT1G25510.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japoni
MSGI1_3379	TC8581	22.2	53.5	40.3	138.6	1.3	1.8	0	-1.4	amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine.OASTL	"ATCYSC1 (BETA-SUBSTITUTED ALA SYNTHASE 3;1); L-3-cyanoalanine synthase/ cysteine synthase Encodes a cysteine synthase isomer AtcysC1. The isomer is however less effective in cysteine biosynthesis. It is involved in beta-cyanoalanine biosynthesis, an inte"
MSGI1_444	TC8582	168.3	35.5	108.8	107.6	-2.2	0	0	-1.6	cell wall	"endo-1,4-beta-glucanase, putative / cellulase, putative  Identical to Endoglucanase 6 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 6) [Arabidopsis Thaliana] (GB:Q42059;GB:Q8H160;GB:Q9C7W3); similar to endo-1,4-beta-glucanase, putative / cellulase, put"
MSGI1_444	TC8582	168.3	35.5	108.8	107.6	-2.2	0	0	-1.6	cell wall	"endo-1,4-beta-glucanase, putative / cellulase, putative  Identical to Endoglucanase 6 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 6) [Arabidopsis Thaliana] (GB:Q42059;GB:Q8H160;GB:Q9C7W3); similar to endo-1,4-beta-glucanase, putative / cellulase, put"
MSGI1_444	TC8582	168.3	35.5	108.8	107.6	-2.2	0	0	-1.6	"cell wall.degradation.cellulases and beta -1,4-glucanases"	"endo-1,4-beta-glucanase, putative / cellulase, putative  Identical to Endoglucanase 6 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 6) [Arabidopsis Thaliana] (GB:Q42059;GB:Q8H160;GB:Q9C7W3); similar to endo-1,4-beta-glucanase, putative / cellulase, put"
MSGI1_444	TC8582	168.3	35.5	108.8	107.6	-2.2	0	0	-1.6	"misc.gluco-, galacto- and mannosidases"	"endo-1,4-beta-glucanase, putative / cellulase, putative  Identical to Endoglucanase 6 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 6) [Arabidopsis Thaliana] (GB:Q42059;GB:Q8H160;GB:Q9C7W3); similar to endo-1,4-beta-glucanase, putative / cellulase, put"
MSGI1_2145	TC8585	54.6	47.9	35.9	73.6	0	1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_30344	TC8589	366.3	241.6	724.7	756.2	0	0	0	-1.6	not assigned.unknown	not assigned.unknown
MSGI1_11766	TC8590	173.6	136.1	200.7	478.8	0	1.3	0	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_1452	TC8595	30.6	7.5	35.5	13.7	-2	0	0	0	cell wall	"LAC11 (laccase 11); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_1452	TC8595	30.6	7.5	35.5	13.7	-2	0	0	0	secondary metabolism.simple phenols	"LAC11 (laccase 11); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_114278	TC8598	32.5	40.4	0	0	0	0	6	6.3	not assigned.unknown	not assigned.unknown
MSGI1_17654	TC8599	25.9	30.9	35.7	64.4	0	0	0	-1.1	not assigned.unknown	not assigned.unknown
MSGI1_217	TC86	15.1	17.1	45.9	14.4	0	-1.7	-1.6	0	hormone metabolism.cytokinin.signal transduction	"AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2. similar to WOL (CYTOKININ RESPONSE 1) [Arabidopsis"
MSGI1_2734	TC8602	60.3	140.4	238.2	71.7	1.2	-1.7	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_5278	TC8604	39.1	38.5	133.8	42.4	0	-1.7	-1.8	0	amino acid metabolism.synthesis.aromatic aa.tyrosine.arogenate dehydrogenase & prephenate dehydrogenase	"arogenate dehydrogenase  Identical to Arogenate dehydrogenase 1, chloroplast precursor (EC 1.3.1.78) (TyrAAT1) (TYRATC) (TYRAAT1) [Arabidopsis Thaliana] (GB:Q944B6;GB:O82603); similar to prephenate dehydrogenase family protein [Arabidopsis thaliana] (TAI"
MSGI1_7866	TC8610	13.3	24.8	44.6	25.7	0	0	-1.7	0	misc.glutathione S transferases	ATGSTZ2 (Arabidopsis thaliana Glutathione S-transferase (class zeta) 2); glutathione transferase Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). Identical to Probable glutathione S
MSGI1_16901	TC8612	17.3	32.9	63.7	37	0	0	-1.9	0	misc.glutathione S transferases	ATGSTZ2 (Arabidopsis thaliana Glutathione S-transferase (class zeta) 2); glutathione transferase Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). Identical to Probable glutathione S
MSGI1_1516	TC8620	49.3	39.8	125.4	43.8	0	-1.5	-1.3	0	cell wall	"glucan endo-1,3-beta-glucosidase-related  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29380.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF99730.1); similar to expressed protein [Oryza sativa (japonica cu"
MSGI1_1516	TC8620	49.3	39.8	125.4	43.8	0	-1.5	-1.3	0	cell wall	"glucan endo-1,3-beta-glucosidase-related  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29380.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF99730.1); similar to expressed protein [Oryza sativa (japonica cu"
MSGI1_1516	TC8620	49.3	39.8	125.4	43.8	0	-1.5	-1.3	0	"misc.beta 1,3 glucan hydrolases"	"glucan endo-1,3-beta-glucosidase-related  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29380.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF99730.1); similar to expressed protein [Oryza sativa (japonica cu"
MSGI1_1516	TC8620	49.3	39.8	125.4	43.8	0	-1.5	-1.3	0	"misc.gluco-, galacto- and mannosidases"	"glucan endo-1,3-beta-glucosidase-related  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29380.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF99730.1); similar to expressed protein [Oryza sativa (japonica cu"
MSGI1_639	TC8628	16.3	16.3	50.5	21.6	0	0	-1.6	0	signalling.calcium	similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G53590.1); similar to Os02g0313700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046658.1); similar to Os01g0242600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042557.1
MSGI1_6408	TC8636	41.4	32.3	15.4	17.2	0	0	1.4	0	cell wall.pectin*esterases.acetyl esterase	"carboxylic ester hydrolase  similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT5G26670.1); similar to pectin acetylesterase [Eucalyptus globulus subsp. globulus] (GB:ABG34280.1); contains InterPro domain Pectinacetylesterase; (Inter"
MSGI1_60732	TC8641	38.8	25	49.2	12.8	0	-1.9	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	PAL1 (PHE AMMONIA LYASE 1); phenylalanine ammonia-lyase encodes a protein similar to phenylalanine ammonia-lyase Identical to Phenylalanine ammonia-lyase 1 (EC 4.3.1.5) (PAL1) [Arabidopsis Thaliana] (GB:P35510;GB:Q94AN1;GB:Q9ZQD6); similar to PAL2 (pheny
MSGI1_4082	TC8644	66.8	42.9	30.6	35.1	0	0	1.1	0	cell.organisation	"F-actin capping protein alpha subunit family protein  Identical to F-actin capping protein subunit alpha (CapZ-alpha) [Arabidopsis Thaliana] (GB:O82631;GB:Q9MA66); similar to F-actin capping protein, alpha subunit [Medicago truncatula] (GB:ABE92863.1); c"
MSGI1_2817	TC8647	236.1	63.5	444.4	339.2	-1.9	0	0	-2.4	TCA / org. transformation.carbonic anhydrases	"CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding  Identical to Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase) (CA1) [Arabidopsis Thaliana] (GB:P27140;GB:Q8RWW2;GB:Q93VR8); similar to CA2 (BETA CARBONIC A"
MSGI1_628	TC8650	13.7	54	37.8	80.1	2	1.1	0	0	transport.metal	"YSL1 (YELLOW STRIPE LIKE 1); oligopeptide transporter Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1). similar to YSL2 (YELLOW STRIPE LIKE 2), oligopeptide transporter [Arabidopsis thaliana] (TAIR"
MSGI1_5973	TC8653	66.9	38.8	32.6	37.9	0	0	1	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"glycosyl hydrolase family 3 protein  similar to BXL1 (BETA-XYLOSIDASE 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G49360.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G10560.1); sim"
MSGI1_8122	TC8657	93.7	35.3	96.3	70.5	-1.4	0	0	-1	RNA.regulation of transcription.unclassified	"29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative  similar to 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putat"
MSGI1_8122	TC8657	93.7	35.3	96.3	70.5	-1.4	0	0	-1	RNA.RNA binding	"29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative  similar to 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putat"
MSGI1_1682	TC8663	16.4	56.4	70	75.9	1.8	0	-2.1	0	misc.dynamin	dynamin family protein  similar to dynamin family protein [Arabidopsis thaliana] (TAIR:AT1G60530.1); similar to OSIGBa0103I21.1 [Oryza sativa (indica cultivar-group)] (GB:CAH65868.1); similar to Os03g0260000 [Oryza sativa (japonica cultivar-group)] (GB:NP
MSGI1_4649	TC8665	54.1	65.3	32	89	0	1.5	0	0	not assigned.unknown	not assigned.unknown
MSGI1_3738	TC8666	38	34.1	91.5	40	0	-1.2	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_10387	TC867	127.9	162.1	0.2	0.2	0	0	9.3	9.7	not assigned.unknown	not assigned.unknown
MSGI1_1948	TC8671	188.6	89.7	85.3	112.2	-1.1	0	1.1	0	transport.metabolite transporters at the mitochondrial membrane	"mitochondrial phosphate transporter  similar to mitochondrial phosphate transporter, putative [Arabidopsis thaliana] (TAIR:AT3G48850.1); similar to mitochondrial phosphate transporter [Glycine max] (GB:BAA31582.1); contains InterPro domain Adenine nucleo"
MSGI1_4142	TC8675	299.2	429.1	138.9	311.2	0	1.2	1.1	0	cell wall	pollen Ole e 1 allergen and extensin family protein  similar to pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] (TAIR:AT1G28290.2); similar to HyPRP1 [Gossypium hirsutum] (GB:ABG91751.1); contains InterPro domain Pollen Ole e 1
MSGI1_4142	TC8675	299.2	429.1	138.9	311.2	0	1.2	1.1	0	stress.abiotic.unspecified	pollen Ole e 1 allergen and extensin family protein  similar to pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] (TAIR:AT1G28290.2); similar to HyPRP1 [Gossypium hirsutum] (GB:ABG91751.1); contains InterPro domain Pollen Ole e 1
MSGI1_6031	TC8676	56.8	120.3	80.4	109.7	1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_2510	TC868	23.5	36.5	153	60.2	0	-1.3	-2.7	0	misc.cytochrome P450	CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1); oxygen binding Encodes an oxime-metabolizing enzyme in the biosynthetic pathway of glucosinolates.  Is required for phytochrome signal transduction in red light.   Mutation confers auxin overproduction. Ident
MSGI1_2510	TC868	23.5	36.5	153	60.2	0	-1.3	-2.7	0	cell wall	CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1); oxygen binding Encodes an oxime-metabolizing enzyme in the biosynthetic pathway of glucosinolates.  Is required for phytochrome signal transduction in red light.   Mutation confers auxin overproduction. Ident
MSGI1_3970	TC8680	52	53.1	219.8	67.1	0	-1.7	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_17354	TC8681	0.4	0.9	301.8	3	0	-6.7	-9.6	0	not assigned.unknown	not assigned.unknown
MSGI1_8266	TC8683	82.5	38.3	49.9	48.1	-1.1	0	0	0	TCA / org. transformation.other organic acid transformaitons.atp-citrate lyase	ACLA-1 (ATP-citrate lyase A-1) One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase.  Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regul
MSGI1_1905	TC8689	82.2	128.5	252.5	132.2	0	0	-1.6	0	hormone metabolism.auxin.induced-regulated-responsive-activated	"auxin-responsive protein, putative  similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G17280.1); similar to hypothetical protein 26.t00022 [Brassica oleracea] (GB:ABD65002.1); contains InterPro domain Protein of unknown function"
MSGI1_24030	TC869	55.8	89.5	315.8	122.3	0	-1.4	-2.5	0	misc.cytochrome P450	CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1); oxygen binding Encodes an oxime-metabolizing enzyme in the biosynthetic pathway of glucosinolates.  Is required for phytochrome signal transduction in red light.   Mutation confers auxin overproduction. Ident
MSGI1_4500	TC8695	70.3	86	42.9	146.3	0	1.8	0	0	misc.cytochrome P450	"CYP712A1 (cytochrome P450, family 712, subfamily A, polypeptide 1); oxygen binding member of CYP712A similar to CYP712A2 (cytochrome P450, family 712, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G06905.1); similar to E-cla"
MSGI1_48261	TC870	4.8	5.1	23.5	10	0	0	-2.3	0	misc.cytochrome P450	"CYP71B23 (cytochrome P450, family 71, subfamily B, polypeptide 23); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B23 (EC 1.14.-.-) (CYP71B23) [Arabidopsis Thaliana] (GB:Q9LTM0;GB:Q6AWT7); similar to CYP71B28 (cytochrome P450, fa"
MSGI1_4673	TC8701	31.4	68.9	35.2	86.2	1.1	1.3	0	0	protein.degradation.ubiquitin.E2	"UBC28; ubiquitin-protein ligase  similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT4G27960.2); similar to ubiquitin carrier-like protein [Arachis hypogaea] (GB:ABI84263.1); similar to ubiquitin conj"
MSGI1_47159	TC8702	60.7	61.7	105	126.2	0	0	0	-1	not assigned.unknown	not assigned.unknown
MSGI1_3923	TC8705	71.3	91.6	161.9	108.2	0	0	-1.2	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	HAT22 (homeobox-leucine zipper protein 22); transcription factor Encodes homeobox protein HAT22. Identical to Homeobox-leucine zipper protein HAT22 (Homeodomain-leucine zipper protein HAT22) (HD-ZIP protein 22) (HAT22) [Arabidopsis Thaliana] (GB:P46604;G
MSGI1_3923	TC8705	71.3	91.6	161.9	108.2	0	0	-1.2	0	development.unspecified	HAT22 (homeobox-leucine zipper protein 22); transcription factor Encodes homeobox protein HAT22. Identical to Homeobox-leucine zipper protein HAT22 (Homeodomain-leucine zipper protein HAT22) (HD-ZIP protein 22) (HAT22) [Arabidopsis Thaliana] (GB:P46604;G
MSGI1_10782	TC8709	134.3	87.2	68.3	78.9	0	0	1	0	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	"NADH-ubiquinone oxidoreductase-related  Identical to Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) [Arabidopsis Thaliana] (GB:Q9FLX7); similar to unknown protein [Arabidopsis tha"
MSGI1_16684	TC8717	171.3	83	71.1	98.4	-1	0	1.3	0	protein.degradation.ubiquitin	"UBQ1 (EARLY-RESPONSIVE TO DEHYDRATION 16, UBIQUITIN EXTENSION PROTEIN 1); protein binding Ubiquitin extension protein Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical"
MSGI1_1831	TC8718	39.1	51.7	57	16.3	0	-1.8	0	1.7	not assigned.unknown	not assigned.unknown
MSGI1_3932	TC873	110.1	258.6	106.4	212.1	1.2	1	0	0	N-metabolism.ammonia metabolism.glutamine synthase	"ATGSR1 (Arabidopsis thaliana glutamine synthase clone R1); glutamate-ammonia ligase encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium Identical to Glutamine synthetase cytosolic isozyme 1-1 (EC 6.3.1.2) (GLN1;"
MSGI1_9408	TC8732	109	39.1	18.2	24.5	-1.5	0	2.6	0	cell.organisation	"ACT11 (ACTIN-11); structural constituent of cytoskeleton Encodes an actin that is expressed predominantly during reproductive development. Identical to Actin-11 (ACT11) [Arabidopsis Thaliana] (GB:P53496); similar to ACT3 (ACTIN 3), structural constituent"
MSGI1_28167	TC874	105.3	243.2	108.9	174.4	1.2	0	0	0	N-metabolism.ammonia metabolism.glutamine synthase	"ATGSR1 (Arabidopsis thaliana glutamine synthase clone R1); glutamate-ammonia ligase encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium Identical to Glutamine synthetase cytosolic isozyme 1-1 (EC 6.3.1.2) (GLN1;"
MSGI1_1760	TC8746	37.3	50.1	19.4	47.3	0	1.3	0	0	nucleotide metabolism.synthesis.pyrimidine.UMP Synthase	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)  Identical to Uridine 5'-monophosphate synthase (UMP synthase) [Includes: Orotate phosphoribosyltransferase (EC 2.4.2.10) (OPRTase); Orotidine 5'- phosphate decarboxylase (EC 4.1.1.23) (OMPd
MSGI1_646	TC8755	15.5	63.2	63.3	52.4	2	0	-2	0	metal handling.acquisition	"ATFRO7/FRO7 (FERRIC REDUCTION OXIDASE 7); ferric-chelate reductase/ oxidoreductase Encodes a ferric chelate reductase.  Shows differential splicing and has three different mRNA products.  Expressed in the shoot, flower and cotyledon. similar to ATFRO6/FR"
MSGI1_2420	TC8756	18.7	46	23.4	39.4	1.3	0	0	0	cell wall	"leucine-rich repeat family protein / protein kinase family protein  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G35710.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB"
MSGI1_2420	TC8756	18.7	46	23.4	39.4	1.3	0	0	0	signalling.receptor kinases.leucine rich repeat XII	"leucine-rich repeat family protein / protein kinase family protein  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G35710.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB"
MSGI1_998	TC8757	12.5	35.9	12.4	32	1.5	0	0	0	RNA.regulation of transcription.GRAS transcription factor family	scarecrow transcription factor family protein  similar to scarecrow-like transcription factor 7 (SCL7) [Arabidopsis thaliana] (TAIR:AT3G50650.1); similar to Os03g0723000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051115.1); similar to GRAS6 [Solan
MSGI1_998	TC8757	12.5	35.9	12.4	32	1.5	0	0	0	development.unspecified	scarecrow transcription factor family protein  similar to scarecrow-like transcription factor 7 (SCL7) [Arabidopsis thaliana] (TAIR:AT3G50650.1); similar to Os03g0723000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051115.1); similar to GRAS6 [Solan
MSGI1_5089	TC8758	51.9	41.6	84.6	94.3	0	0	0	-1.2	redox.thioredoxin	"ATCDSP32/CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD); thiol-disulfide exchange intermediate  similar to ATTRX4 (thioredoxin H-type 4), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G19730.1); similar to CDSP32 p"
MSGI1_15965	TC8761	15.6	4.9	2.3	0.5	0	0	2.8	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_15965	TC8761	15.6	4.9	2.3	0.5	0	0	2.8	0	transport.sulphate	"SULTR3;1 (SULFATE TRANSPORTER 1); sulfate transporter Encodes a sulfate transporter. Identical to Sulfate transporter 3.1 (AST12) (AtST1) (SULTR3;1) [Arabidopsis Thaliana] (GB:Q9SV13;GB:O23250;GB:O64435;GB:O65025); similar to SULTR3,4 (SULTR3,4), sulfate"
MSGI1_1319	TC8765	12.6	17.3	37	24.6	0	0	-1.6	0	cell.organisation	"ATMAP70-5 (microtubule-associated proteins 70-5); microtubule binding Encodes a microtubule associated protein (MAP70-5). Expressed in all tissues. similar to ATMAP70-3 (microtubule-associated proteins 70-3), microtubule binding [Arabidopsis thaliana] (T"
MSGI1_370	TC8767	2.9	28.4	225.8	25.2	3.3	-3.2	-6.3	0	minor CHO metabolism.raffinose family.raffinose synthases.putative	"ATSIP2 (ARABIDOPSIS THALIANA SEED IMBIBITION 2); hydrolase, hydrolyzing O-glycosyl compounds  similar to ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G55740.1); similar to DI"
MSGI1_484	TC877	96.7	59.7	36	35.5	0	0	1.4	0	cell wall.degradation.mannan-xylose-arabinose-fucose	"BXL2 (BETA-XYLOSIDASE 2); hydrolase, hydrolyzing O-glycosyl compounds encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. similar t"
MSGI1_22452	TC8771	642.7	734.5	428.4	2066.8	0	2.3	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_19728	TC8772	438.8	466	204.5	848.3	0	2.1	1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_21312	TC8773	86.3	89.8	36.7	45.9	0	0	1.2	0	not assigned.unknown	not assigned.unknown
MSGI1_5207	TC8774	152.8	170.9	73.8	71.1	0	0	1	1.3	not assigned.unknown	not assigned.unknown
MSGI1_194	TC8783	29.9	23.4	22.6	74.5	0	1.7	0	-1.7	major CHO metabolism.degradation.starch.starch phosphorylase	"glucan phosphorylase, putative Encodes a plastidic alpha-glucan phosphorylase.  In vitro, the enzyme has a preference for maltooligosaccharides, such as maltoheptaose. similar to ATPHS2/PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2), phosphorylase/ transferase, tra"
MSGI1_1860	TC8796	188.9	79	66.8	96.1	-1.3	0	1.5	0	lipid metabolism.FA desaturation.omega 6 desaturase	"FAD2 (FATTY ACID DESATURASE 2); delta12-fatty acid dehydrogenase Major enzyme responsible for the synthesis of 18:2 fatty acids in the endoplasmic reticulum. Contains His-rich motifs, which contribute to the interaction with the electron donor cytochrome"
MSGI1_9736	TC8800	186	1294.6	1773.4	1286.1	2.8	0	-3.3	0	development.unspecified	DRM1 (DORMANCY-ASSOCIATED PROTEIN 1) dormancy-associated protein (DRM1) similar to dormancy/auxin associated family protein [Arabidopsis thaliana] (TAIR:AT2G33830.2); similar to auxin-repressed protein-like protein ARP1 [Manihot esculenta] (GB:AAX84677.1)
MSGI1_87728	TC8801	260.1	23.9	15.3	13.4	-3.4	0	4.1	0	stress.biotic	disease resistance-responsive family protein  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22900.1); similar to dirigent-like protein pDIR9 [Picea engelmannii x Picea glauca] (GB:ABD52120.1); contains InterPro domain Plant disease resistanc
MSGI1_7771	TC8802	167.9	26.2	14	19.3	-2.7	0	3.6	0	stress.biotic	disease resistance-responsive family protein  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22900.1); similar to dirigent-like protein pDIR9 [Picea engelmannii x Picea glauca] (GB:ABD52120.1); contains InterPro domain Plant disease resistanc
MSGI1_2930	TC8804	31	25	18.1	46.7	0	1.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_1746	TC881	27.6	71.5	68.4	23.7	1.4	-1.5	-1.3	1.6	not assigned.unknown	not assigned.unknown
MSGI1_10585	TC8810	44.3	45.8	25.3	54.3	0	1.1	0	0	RNA.processing	"EMB1644 (EMBRYO DEFECTIVE 1644)  similar to SMD3 (SNRNP CORE PROTEIN SMD3) [Arabidopsis thaliana] (TAIR:AT1G76300.1); similar to Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core [Medicago truncatula] (GB:ABE94505.1); contains InterPro domain"
MSGI1_6189	TC8811	11.7	24.7	79	11.7	0	-2.8	-2.8	0	not assigned.unknown	not assigned.unknown
MSGI1_15116	TC8812	5	11.9	80	8.1	0	-3.3	-4	0	not assigned.unknown	not assigned.unknown
MSGI1_717	TC8817	12.1	17.3	43.1	18.7	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_10253	TC8820	57.2	100.8	24.8	38.6	0	0	1.2	1.4	misc.glutathione S transferases	ATGSTU8 (Arabidopsis thaliana Glutathione S-transferase (class tau) 8); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU7 (GLUTATHIONE S-TRA
MSGI1_2935	TC8822	63.5	36	30.5	32.2	0	0	1.1	0	cell wall	"SCPL40 (serine carboxypeptidase-like 40); serine carboxypeptidase  similar to SCPL39 (serine carboxypeptidase-like 39), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G52020.1); similar to putative serine carboxypeptidase [Pisum sativum] (GB:CAC"
MSGI1_2935	TC8822	63.5	36	30.5	32.2	0	0	1.1	0	protein.degradation.serine protease	"SCPL40 (serine carboxypeptidase-like 40); serine carboxypeptidase  similar to SCPL39 (serine carboxypeptidase-like 39), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G52020.1); similar to putative serine carboxypeptidase [Pisum sativum] (GB:CAC"
MSGI1_7522	TC8824	149.4	146.8	51.3	71.4	0	0	1.5	1	cell wall	invertase/pectin methylesterase inhibitor family protein  similar to invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22) [Arabidopsis thaliana] (TAIR:AT5G62350.1); similar to pectin methylesterase inhibitor isoform [Solanu
MSGI1_7522	TC8824	149.4	146.8	51.3	71.4	0	0	1.5	1	misc.invertase/pectin methylesterase inhibitor family protein	invertase/pectin methylesterase inhibitor family protein  similar to invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22) [Arabidopsis thaliana] (TAIR:AT5G62350.1); similar to pectin methylesterase inhibitor isoform [Solanu
MSGI1_20451	TC8825	0.3	2	22.7	0.4	0	-5.8	-6.2	0	cell wall	invertase/pectin methylesterase inhibitor family protein  similar to invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22) [Arabidopsis thaliana] (TAIR:AT5G62350.1); similar to pectin methylesterase inhibitor isoform [Solanu
MSGI1_20451	TC8825	0.3	2	22.7	0.4	0	-5.8	-6.2	0	misc.invertase/pectin methylesterase inhibitor family protein	invertase/pectin methylesterase inhibitor family protein  similar to invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22) [Arabidopsis thaliana] (TAIR:AT5G62350.1); similar to pectin methylesterase inhibitor isoform [Solanu
MSGI1_1225	TC8831	12.7	42.4	36.6	23.7	1.7	0	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_16505	TC8840	321.9	152	110.6	172.2	-1.1	0	1.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L35a (RPL35aC)  Identical to 60S ribosomal protein L35a-3 (RPL35AC) [Arabidopsis Thaliana] (GB:Q9C912); similar to 60S ribosomal protein L35a (RPL35aA) [Arabidopsis thaliana] (TAIR:AT1G07070.1); similar to ribosomal protein L33 [Cast
MSGI1_631	TC8844	129.6	303.3	141.2	358.3	1.2	1.3	0	0	TCA / org. transformation.other organic acid transformaitons.malic	"ATNADP-ME1 (NADP-MALIC ENZYME 1); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to"
MSGI1_1165	TC8846	33.2	30.9	102.2	61.4	0	0	-1.6	0	transporter.sugars	"hexose transporter, putative  Identical to Probable plastidic glucose transporter 2 [Arabidopsis Thaliana] (GB:Q9FYG3); similar to SGB1, carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G79820.2); similar to Sugar transporter [Medic"
MSGI1_8790	TC8847	32.5	68.1	104.6	110	1.1	0	-1.7	0	misc.glutathione S transferases	ATGSTF9 (Arabidopsis thaliana Glutathione S-transferase (class phi) 9); glutathione transferase Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTF10 (EARLY DEHYDRATIO
MSGI1_1149	TC885	27.5	29.4	107.8	29.9	0	-1.9	-2	0	transport.amino acids	amino acid transporter family protein  similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT3G54830.1); similar to Os02g0101000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045585.1); similar to Amino acid/polyamine trans
MSGI1_4803	TC8859	32	32.8	198.3	25.7	0	-2.9	-2.6	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 52 precursor (EC 1.11.1.7) (Atperox P52) (ATP49) (PER52) [Arabidopsis Thaliana] (GB:Q9FLC0); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to Peroxidase P7 (TP7) (GB:P0043"
MSGI1_4803	TC8859	32	32.8	198.3	25.7	0	-2.9	-2.6	0	cell wall	"peroxidase, putative  Identical to Peroxidase 52 precursor (EC 1.11.1.7) (Atperox P52) (ATP49) (PER52) [Arabidopsis Thaliana] (GB:Q9FLC0); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G58400.1); similar to Peroxidase P7 (TP7) (GB:P0043"
MSGI1_7430	TC8860	16.5	50.6	26.4	17.7	1.6	0	0	1.5	RNA.regulation of transcription.GRAS transcription factor family	scarecrow transcription factor family protein  similar to scarecrow-like transcription factor 14 (SCL14) [Arabidopsis thaliana] (TAIR:AT1G07530.1); similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G07520.1); similar
MSGI1_7430	TC8860	16.5	50.6	26.4	17.7	1.6	0	0	1.5	development.unspecified	scarecrow transcription factor family protein  similar to scarecrow-like transcription factor 14 (SCL14) [Arabidopsis thaliana] (TAIR:AT1G07530.1); similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G07520.1); similar
MSGI1_5414	TC8861	0.9	10.4	0.4	0.2	0	0	0	5.7	RNA.regulation of transcription.GRAS transcription factor family	scarecrow transcription factor family protein  similar to scarecrow-like transcription factor 14 (SCL14) [Arabidopsis thaliana] (TAIR:AT1G07530.1); similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G07520.1); similar
MSGI1_5414	TC8861	0.9	10.4	0.4	0.2	0	0	0	5.7	development.unspecified	scarecrow transcription factor family protein  similar to scarecrow-like transcription factor 14 (SCL14) [Arabidopsis thaliana] (TAIR:AT1G07530.1); similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G07520.1); similar
MSGI1_5475	TC8862	46	53.8	39.6	77.5	0	1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_5541	TC8863	101.9	81.3	42.8	82.9	0	1	1.3	0	protein.synthesis.misc ribososomal protein	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); structural constituent of ribosome Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identical to 60S ribosomal protein L5-1 (ATL5) [Arabid
MSGI1_21457	TC8864	101.7	73	48.7	79.2	0	0	1.1	0	protein.synthesis.misc ribososomal protein	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); structural constituent of ribosome Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identical to 60S ribosomal protein L5-1 (ATL5) [Arabid
MSGI1_679	TC8865	47.6	74.8	35.2	33.3	0	0	0	1.2	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G33170.1); similar to receptor-like protein kinase [Nicotiana tabacum] (GB:BAC07504.2); cont"
MSGI1_679	TC8865	47.6	74.8	35.2	33.3	0	0	0	1.2	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_679	TC8865	47.6	74.8	35.2	33.3	0	0	0	1.2	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G33170.1); similar to receptor-like protein kinase [Nicotiana tabacum] (GB:BAC07504.2); cont"
MSGI1_5848	TC8866	244.8	328.4	0.6	0.2	0	0	8.7	10.7	not assigned.unknown	not assigned.unknown
MSGI1_13302	TC8883	26	44	70.5	72	0	0	-1.4	0	glycolysis.enolase	LOS2 (Low expression of osmotically responsive genes 1); phosphopyruvate hydratase Involved in light-dependent cold tolerance and encodes an enolase. Identical to Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase) (2-phospho-D- glycerate hydro-lyase)
MSGI1_5835	TC8886	18.5	57.6	24.6	37.7	1.6	0	0	0	secondary metabolism.phenylpropanoids	isochorismatase hydrolase family protein  similar to hypothetical protein [Plantago major] (GB:CAH59421.1); contains InterPro domain Isochorismatase hydrolase; (InterPro:IPR000868)
MSGI1_2290	TC8891	17.5	48.4	24.1	14.7	1.5	0	0	1.7	stress.biotic	EDS1 (ENHANCED DISEASE SUSCEPTIBILITY 1); signal transducer/ triacylglycerol lipase Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases. similar to lipase class 3 family protein / disease resistance
MSGI1_13388	TC8892	297.6	161.9	145.2	163.9	0	0	1	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S24 (RPS24A)  Identical to 40S ribosomal protein S24-1 (RPS24A) [Arabidopsis Thaliana] (GB:Q9SS17); similar to 40S ribosomal protein S24 (RPS24B) [Arabidopsis thaliana] (TAIR:AT5G28060.1); similar to ribosomal protein S19 (GB:1909359
MSGI1_42496	TC8893	225.9	116.1	73.6	111.4	0	0	1.6	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S24 (RPS24A)  Identical to 40S ribosomal protein S24-1 (RPS24A) [Arabidopsis Thaliana] (GB:Q9SS17); similar to 40S ribosomal protein S24 (RPS24B) [Arabidopsis thaliana] (TAIR:AT5G28060.1); similar to ribosomal protein S19 (GB:1909359
MSGI1_6874	TC8895	31.4	14.7	100.3	14.2	0	-2.8	-1.7	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_199	TC8896	15.6	19.9	49.3	15.1	0	-1.7	-1.7	0	not assigned.unknown	not assigned.unknown
MSGI1_7415	TC8897	20.1	27.2	59.7	29.7	0	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_3392	TC8901	36.7	15.8	38.6	11.3	0	-1.8	0	0	cell wall	"CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); kinase Encodes a CBL-interacting protein kinase with similarity to SOS2 similar to CIPK23 (CBL-INTERACTING PROTEIN KINASE 23), kinase [Arabidopsis thaliana] (TAIR:AT1G30270.2); similar to CBL-interacting protein"
MSGI1_3392	TC8901	36.7	15.8	38.6	11.3	0	-1.8	0	0	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_3392	TC8901	36.7	15.8	38.6	11.3	0	-1.8	0	0	protein.postranslational modification	"CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); kinase Encodes a CBL-interacting protein kinase with similarity to SOS2 similar to CIPK23 (CBL-INTERACTING PROTEIN KINASE 23), kinase [Arabidopsis thaliana] (TAIR:AT1G30270.2); similar to CBL-interacting protein"
MSGI1_8192	TC8902	86.3	18.8	82.9	65.7	-2.2	0	0	-1.8	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX2 (LIPOXYGENASE 2) Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection. Identical to Lipoxygenase, chloroplast precur"
MSGI1_544	TC8906	15	25.9	44	29.3	0	0	-1.6	0	hormone metabolism.ethylene.signal transduction	"EIN3 (ETHYLENE-INSENSITIVE3); transcription factor ethylene-insensitive3 Identical to ETHYLENE-INSENSITIVE3 protein (EIN3) [Arabidopsis Thaliana] (GB:O24606;GB:Q8VYW4); similar to EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1), transcription factor [Arabidopsis tha"
MSGI1_544	TC8906	15	25.9	44	29.3	0	0	-1.6	0	RNA.regulation of transcription.EIN3-like(EIL) transcription factor family	"EIN3 (ETHYLENE-INSENSITIVE3); transcription factor ethylene-insensitive3 Identical to ETHYLENE-INSENSITIVE3 protein (EIN3) [Arabidopsis Thaliana] (GB:O24606;GB:Q8VYW4); similar to EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1), transcription factor [Arabidopsis tha"
MSGI1_4163	TC8914	16.2	130.7	141.6	99	3	0	-3.1	0	hormone metabolism.auxin.induced-regulated-responsive-activated	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15450.1); similar to unknown [Glycine max] (GB:AAG00940.1); contains domain no description (G3D.3.60.20.10); contains domain N-terminal nucleophile aminohydrolases (Ntn hydrolases) (SSF56235)
MSGI1_54064	TC8921	43.7	45.1	8.7	16.4	0	0	2.3	1.5	not assigned.unknown	not assigned.unknown
MSGI1_5142	TC8924	23	25.2	6.4	5.5	0	0	0	2.2	DNA.synthesis/chromatin structure	LOS4 (Low expression of osmotically responsive genes 1); ATP-dependent helicase Encodes a putative DEAD-Box RNA Helicase and has RNA-dependent ATPase activity. Mutant is Sensitive to chilling stress and heat stress. Germination of the mutant is inhibited
MSGI1_2248	TC8931	3.4	23.7	30.1	117.6	2.8	2	-3.1	-2.3	protein.degradation.serine protease	"SCPL33 (serine carboxypeptidase-like 33); serine carboxypeptidase  similar to SCPL34, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G23210.1); similar to Os01g0332500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042932.1); similar to Os05"
MSGI1_2248	TC8931	3.4	23.7	30.1	117.6	2.8	2	-3.1	-2.3	cell wall	"SCPL33 (serine carboxypeptidase-like 33); serine carboxypeptidase  similar to SCPL34, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G23210.1); similar to Os01g0332500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042932.1); similar to Os05"
MSGI1_4449	TC8935	180.1	55.5	82.7	87.6	-1.7	0	1.1	0	redox.peroxiredoxin	"2-cys peroxiredoxin, chloroplast, putative  similar to 2-cys peroxiredoxin, chloroplast (BAS1) [Arabidopsis thaliana] (TAIR:AT3G11630.1); similar to 2-Cys peroxiredoxin [Brassica napus] (GB:AAG30570.1); contains InterPro domain Thioredoxin-like fold; (In"
MSGI1_9667	TC8936	106.2	30.2	45.5	45.6	-1.8	0	1.2	0	redox.peroxiredoxin	"2-cys peroxiredoxin, chloroplast (BAS1)  Identical to 2-cys peroxiredoxin BAS1, chloroplast precursor (EC 1.11.1.15) (BAS1) [Arabidopsis Thaliana] (GB:Q96291;GB:P92938;GB:Q9S7Y0); similar to 2-cys peroxiredoxin, chloroplast, putative [Arabidopsis thalian"
MSGI1_14973	TC8939	76.2	114.9	352.2	164.4	0	-1.1	-2.2	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G48750.1); similar to TED4 [Zinnia elegans] (GB:BAA06462.1)
MSGI1_2330	TC8940	14.6	20.7	13.4	37.4	0	1.5	0	0	misc.cytochrome P450	"CYP82C4 (cytochrome P450, family 82, subfamily C, polypeptide 4); oxygen binding member of CYP82C similar to CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31950.1); similar to CYP82C2 (c"
MSGI1_3941	TC8941	13.9	13	61.5	129.9	0	1.1	-2.1	-3.3	not assigned.unknown	not assigned.unknown
MSGI1_52786	TC8943	13.7	27.8	0.7	1.5	0	0	4.3	4.2	not assigned.unknown	not assigned.unknown
MSGI1_12506	TC8947	49.1	113.1	152.3	330	1.2	1.1	-1.6	-1.5	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G48750.1); similar to TED4 [Zinnia elegans] (GB:BAA06462.1)
MSGI1_11499	TC8948	134	314.2	32.5	55.9	1.2	0	2	2.5	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G48750.1); similar to TED4 [Zinnia elegans] (GB:BAA06462.1)
MSGI1_12720	TC8949	30.7	74.9	110.8	251.6	1.3	1.2	-1.9	-1.7	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G48750.1); similar to TED4 [Zinnia elegans] (GB:BAA06462.1)
MSGI1_1181	TC8958	15.6	18.4	43.9	23.9	0	0	-1.5	0	not assigned.unknown	not assigned.unknown
MSGI1_3104	TC8965	48.4	73.5	168.2	68.5	0	-1.3	-1.8	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	"BLH1 (BLH1); DNA binding / transcription factor BEL1-like homeodomain 1 (BLH1) similar to BLH4 (BLH4), DNA binding [Arabidopsis thaliana] (TAIR:AT2G23760.3); similar to BEL1-like homeodomain transcription factor [Trifolium pratense] (GB:BAE71188.1); cont"
MSGI1_18948	TC8966	8.3	28.1	23.7	23.5	1.8	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_2583	TC8967	9.8	31.8	29.8	32.9	1.7	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_1010	TC8968	10.6	43.1	28.5	14.5	2	0	0	1.6	RNA.regulation of transcription.GRAS transcription factor family	scarecrow-like transcription factor 14 (SCL14)  similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G29060.1); similar to SCARECROW-like protein [Lilium lon (GB:BAC77269.2); contains InterPro domain GRAS transcription
MSGI1_2264	TC8969	24	51	143.3	64.4	0	-1.2	-2.6	0	metal handling	"selenium-binding protein, putative  Identical to Putative selenium-binding protein [Arabidopsis Thaliana] (GB:O23264); similar to EDA38 (embryo sac development arrest 38), selenium binding [Arabidopsis thaliana] (TAIR:AT4G14040.1); similar to selenium-bi"
MSGI1_19978	TC8977	11.7	13.5	0.1	0	0	0	6.9	4.8	signalling.receptor kinases.wheat LRK10 like	protein kinase family protein  similar to serine/threonine protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G66880.1); similar to wall-associated kinase 4-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82478.1); similar to Os01g0136400
MSGI1_38150	TC8981	140.4	53.9	43.2	65.3	-1.4	0	1.7	0	protein.degradation.ubiquitin	UBQ6 (ubiquitin 6); protein binding polyubiquitin gene Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical to 40S ribosomal protein S27a-2 (UBQ6) [Arabidopsis Thaliana]
MSGI1_9301	TC8982	199.5	118.8	56.7	108.5	0	0	1.8	0	protein.degradation.ubiquitin	UBQ6 (ubiquitin 6); protein binding polyubiquitin gene Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical to 40S ribosomal protein S27a-2 (UBQ6) [Arabidopsis Thaliana]
MSGI1_386	TC8985	26.4	21.8	59.5	21.8	0	-1.4	-1.2	0	glycolysis.PEPCase	"ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3); phosphoenolpyruvate carboxylase One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques. Identical to Phosphoenolpyruvate carboxylase 3 (EC 4.1.1."
MSGI1_5040	TC8987	44.4	154.6	110.2	154.4	1.8	0	-1.3	0	misc.myrosinases-lectin-jacalin	"ATPP2-A1 (Arabidopsis thaliana phloem protein 2-A1) encodes a protein similar to phloem lectin in cucumber and celery. Gene is expressed in the phloem, predominantly in the companion cells. similar to ATPP2-A5, transmembrane receptor [Arabidopsis thalian"
MSGI1_2664	TC8990	22.1	22.7	59.1	47.8	0	0	-1.4	0	signalling.light.COP9 signalosome	"FUS6 (FUSCA 6) Represses photomorphogenesis and induces skotomorphogenesis in the dark. Component of the nuclear-localized COP9 complex. Mutants display striking purple coloration due to anthocyanin accumulation in their cotyledons, first become defectiv"
MSGI1_4080	TC8995	42.8	88.6	84.5	65.4	1	0	0	0	lipid metabolism.lipid degradation.lipases	"esterase/lipase/thioesterase family protein  similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G11090.1); similar to lysophospholipase [Hyacinthus orientalis] (GB:AAS20988.1); similar to Os02g0207900 [Oryza sativa (japo"
MSGI1_46356	TC9	3.8	1.9	94.8	99.8	0	0	-4.6	-5.7	PS.lightreaction.photosystem I.PSI polypeptide subunits	"PSAL (photosystem I subunit L) Encodes subunit L of photosystem I reaction center. Identical to Photosystem I reaction center subunit XI, chloroplast precursor (PSI- L) (PSI subunit V) (PSAL) [Arabidopsis Thaliana] (GB:Q9SUI4;GB:Q9ST32;GB:Q9SU06); simila"
MSGI1_1954	TC9002	199.6	44.8	117.7	56.6	-2.2	0	0	0	cell wall.pectin*esterases.acetyl esterase	"pectinacetylesterase, putative  similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT5G45280.2); similar to OSJNBa0041A02.14 [Oryza sativa (japonica cultivar-group)] (GB:CAD41867.2); similar to pectinacetylesterase precursor [Vigna ra"
MSGI1_5760	TC903	48.9	60.2	105.9	51.1	0	0	-1.1	0	RNA.regulation of transcription.putative transcription regulator	"remorin family protein  similar to remorin family protein [Arabidopsis thaliana] (TAIR:AT3G57540.1); similar to remorin-related [Musa acuminata] (GB:ABF70164.1); contains InterPro domain Remorin, C-terminal region; (InterPro:IPR005516)"
MSGI1_4188	TC9032	31.8	42.7	74.8	13.5	0	-2.5	-1.2	1.7	stress.biotic	glycosyl hydrolase family 81 protein  similar to glycosyl hydrolase family 81 protein [Arabidopsis thaliana] (TAIR:AT1G18310.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96863.1); similar to beta-glucan-binding protein 4 [Medicago truncatu
MSGI1_10215	TC9036	27.9	21.9	69	25.6	0	-1.4	-1.3	0	cell wall.precursor synthesis.UGD	"UDP-glucose 6-dehydrogenase, putative  similar to ATUGD1/UGD1 (UDP-glucose dehydrogenase 1), UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G26570.1); similar to UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G29360.2); similar"
MSGI1_1699	TC9037	386.6	130.3	196.1	197.7	-1.6	0	1	0	N-metabolism.ammonia metabolism.glutamine synthase	"GS2 (GLUTAMINE SYNTHETASE 2); glutamate-ammonia ligase chloroplastic glutamine synthetase Identical to Glutamine synthetase, chloroplast/mitochondrial precursor (EC 6.3.1.2) (Glutamate--ammonia ligase) (GS2) (GLN2) [Arabidopsis Thaliana] (GB:Q43127); sim"
MSGI1_14860	TC9039	289.4	47.3	563.2	220.3	-2.6	-1.4	0	-2.2	not assigned.unknown	not assigned.unknown
MSGI1_15918	TC904	7	24.1	30.2	32.5	0	0	-2.1	0	RNA.regulation of transcription.putative transcription regulator	"remorin family protein  similar to remorin family protein [Arabidopsis thaliana] (TAIR:AT3G57540.1); similar to remorin-related [Musa acuminata] (GB:ABF70164.1); contains InterPro domain Remorin, C-terminal region; (InterPro:IPR005516)"
MSGI1_23415	TC9040	4	6.9	32.5	6.2	0	-2.4	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_2139	TC905	61.9	53.4	179.9	60.5	0	-1.6	-1.5	0	secondary metabolism.isoprenoids.carotenoids.phytoene synthase	"PSY (PHYTOENE SYNTHASE); geranylgeranyl-diphosphate geranylgeranyltransferase Encodes phytoene synthase. Identical to Phytoene synthase, chloroplast precursor (EC 2.5.1.-) (PSY1) [Arabidopsis Thaliana] (GB:P37271;GB:O22375;GB:Q8LE86); similar to phytoene"
MSGI1_8101	TC9050	386.7	218.7	144.8	213.9	0	0	1.4	0	nucleotide metabolism.phosphotransfer and pyrophosphatases.nucleoside diphosphate kinase	"NDPK1 (nucleoside diphosphate kinase 1); ATP binding / nucleoside diphosphate kinase nucleoside diphosphate kinase type 1 (NDPK1) gene, complete Identical to Nucleoside diphosphate kinase 1 (EC 2.7.4.6) (Nucleoside diphosphate kinase I) (NDK I) (NDP kina"
MSGI1_1007	TC9052	47.7	37.6	20.8	47.5	0	1.2	1.2	0	amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoglycerate dehydrogenase	"EDA9 (embryo sac development arrest 9); NAD binding / amino acid binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor / phosphoglycerate dehydrogenase  similar to PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE"
MSGI1_111402	TC9053	20.3	31.7	3	2.3	0	0	2.8	3.8	not assigned.unknown	not assigned.unknown
MSGI1_112869	TC9054	14.6	15.8	5	2.1	0	0	0	2.9	stress.biotic	leucine-rich repeat family protein  similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G74180.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT5G49290.1); similar to leucine-rich repeat family pr
MSGI1_31216	TC9055	26.6	36.6	29.8	8.6	0	-1.8	0	2.1	not assigned.unknown	not assigned.unknown
MSGI1_5314	TC906	73.4	62	222.2	25.7	0	-3.1	-1.6	1.3	not assigned.unknown	not assigned.unknown
MSGI1_45687	TC9062	15	6.8	0.3	0	0	0	5.6	0	not assigned.unknown	not assigned.unknown
MSGI1_30585	TC9063	21.3	4.6	14.7	2.6	-2.2	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_10102	TC9064	27.9	7.1	4.8	3.1	-2	0	2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_8396	TC9065	15.6	39.9	9.7	25	1.4	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_743	TC9069	72.5	270.8	173.5	58.1	1.9	-1.6	-1.3	2.2	RNA.regulation of transcription.GRAS transcription factor family	PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1); transcription factor Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway. similar to SCL21 (SCARECROW-LIKE 21
MSGI1_743	TC9069	72.5	270.8	173.5	58.1	1.9	-1.6	-1.3	2.2	signalling.light	PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1); transcription factor Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway. similar to SCL21 (SCARECROW-LIKE 21
MSGI1_873	TC9073	11.9	18.6	35.8	16.6	0	0	-1.6	0	minor CHO metabolism.galactose.alpha-galactosidases	"glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family protein  similar to alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative [Arabidopsis thaliana] (TAIR:AT3G56310.1"
MSGI1_1121	TC9076	34.6	186.6	39.3	178.8	2.4	2.2	0	0	cell wall	FAH1 (FERULATE-5-HYDROXYLASE 1); ferulate 5-hydroxylase encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis. Identical to Cytochrome P450 84A1 (EC 1.14.-.-) (Ferulate-5-hydroxylase) (F5H) (CYP84A1) [Arabidopsis Thaliana] (GB:Q42600); si
MSGI1_1121	TC9076	34.6	186.6	39.3	178.8	2.4	2.2	0	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.F5H	FAH1 (FERULATE-5-HYDROXYLASE 1); ferulate 5-hydroxylase encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis. Identical to Cytochrome P450 84A1 (EC 1.14.-.-) (Ferulate-5-hydroxylase) (F5H) (CYP84A1) [Arabidopsis Thaliana] (GB:Q42600); si
MSGI1_1434	TC9077	49.9	0.7	164.1	109.3	-6.2	0	-1.7	-7.3	not assigned.unknown	not assigned.unknown
MSGI1_118051	TC9081	15.7	21.9	0	0	0	0	5	5.5	not assigned.unknown	not assigned.unknown
MSGI1_1708	TC9094	6.4	12.9	63	14.6	0	-2.1	-3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_1009	TC9096	133.5	3.4	155.7	2.7	-5.3	-5.8	0	0	major CHO metabolism.degradation.sucrose.invertases.vacuolar	"ATBETAFRUCT4/VAC-INV (VACUOLAR INVERTASE); beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds  similar to beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar [Arabidopsis thaliana] (TAIR:AT1G62660.1); similar to"
MSGI1_2281	TC9101	15.6	59.9	38.2	86.2	1.9	1.2	0	0	protein.degradation	LOL3 (LSD ONE LIKE 3); caspase/ cysteine-type endopeptidase Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain similar to latex-abund
MSGI1_8340	TC9103	24.8	18.4	178	20.7	0	-3.1	-2.8	0	cell wall	GLP1 (GERMIN-LIKE PROTEIN 1); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP1) Identical to Germin-like protein subfamily 3 member 1 precursor (AtGER1) (At-GERM1) (AtGLP1) (GLP1) [Arabidopsis Thaliana] (GB:P94040;
MSGI1_8340	TC9103	24.8	18.4	178	20.7	0	-3.1	-2.8	0	stress.abiotic.unspecified	GLP1 (GERMIN-LIKE PROTEIN 1); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP1) Identical to Germin-like protein subfamily 3 member 1 precursor (AtGER1) (At-GERM1) (AtGLP1) (GLP1) [Arabidopsis Thaliana] (GB:P94040;
MSGI1_1953	TC9106	63.2	144.8	125.7	118.2	1.2	0	0	0	"cell wall.degradation.cellulases and beta -1,4-glucanases"	glycosyl hydrolase family 5 protein / cellulase family protein  similar to glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] (TAIR:AT4G28320.1); similar to putative (1-4)-beta-mannan endohydrolase [Oryza sativa (japoni
MSGI1_1953	TC9106	63.2	144.8	125.7	118.2	1.2	0	0	0	"misc.gluco-, galacto- and mannosidases"	glycosyl hydrolase family 5 protein / cellulase family protein  similar to glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] (TAIR:AT4G28320.1); similar to putative (1-4)-beta-mannan endohydrolase [Oryza sativa (japoni
MSGI1_8425	TC9108	42	191.6	307.5	439.3	2.2	0	-2.9	-1.2	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN1 (DARK INDUCIBLE 6) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumul"
MSGI1_2212	TC9113	55.7	16.3	17.9	17.8	-1.8	0	1.6	0	cell wall	"FAD-binding domain-containing protein  similar to ATSEC1A, electron carrier [Arabidopsis thaliana] (TAIR:AT1G01980.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G20830.2); similar to FAD-binding domain-containing pr"
MSGI1_2212	TC9113	55.7	16.3	17.9	17.8	-1.8	0	1.6	0	cell wall	"FAD-binding domain-containing protein  similar to ATSEC1A, electron carrier [Arabidopsis thaliana] (TAIR:AT1G01980.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G20830.2); similar to FAD-binding domain-containing pr"
MSGI1_2212	TC9113	55.7	16.3	17.9	17.8	-1.8	0	1.6	0	secondary metabolism.N misc.alkaloid-like	"FAD-binding domain-containing protein  similar to ATSEC1A, electron carrier [Arabidopsis thaliana] (TAIR:AT1G01980.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G20830.2); similar to FAD-binding domain-containing pr"
MSGI1_2212	TC9113	55.7	16.3	17.9	17.8	-1.8	0	1.6	0	"misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases"	"FAD-binding domain-containing protein  similar to ATSEC1A, electron carrier [Arabidopsis thaliana] (TAIR:AT1G01980.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G20830.2); similar to FAD-binding domain-containing pr"
MSGI1_3085	TC9118	47.9	68.6	31.1	20.5	0	0	0	1.7	hormone metabolism.auxin.induced-regulated-responsive-activated	"auxin-responsive protein -related  similar to membrane protein, putative [Arabidopsis thaliana] (TAIR:AT3G07570.1); similar to membrane protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC01247.1); contains InterPro domain DOMON related; (InterP"
MSGI1_3396	TC9119	105.6	307.5	122	100.7	1.5	0	0	1.6	not assigned.unknown	not assigned.unknown
MSGI1_683	TC9133	20	18.3	28.1	55.1	0	0	0	-1.6	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_683	TC9133	20	18.3	28.1	55.1	0	0	0	-1.6	development.unspecified	nodulin family protein  similar to nodulin family protein [Arabidopsis thaliana] (TAIR:AT2G16660.1); similar to nodulin-like protein [Poncirus trifoliata] (GB:AAN62343.1); similar to Nodulin-like [Medicago truncatula] (GB:ABE93291.1); contains InterPro do
MSGI1_2839	TC9139	10.6	47.7	32.5	7.5	2.2	-2.1	0	2.7	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY33 (WRKY DNA-binding protein 33); transcription factor Member of the plant WRKY transcription factor family.  Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. Ident
MSGI1_469	TC914	32.2	156.8	45	64.7	2.3	0	0	1.3	cell wall.cellulose synthesis	"ATCSLA09 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 4); transferase, transferring glycosyl groups encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium"
MSGI1_4371	TC9140	113.7	39	61.6	74.4	-1.5	0	0	0	"RNA.regulation of transcription.HSF,Heat-shock transcription factor family"	LIL3:1; transcription factor Encodes Lil3:1 (light-harvesting-like) protein.  Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.  A
MSGI1_1193	TC9145	15.6	10.1	53.8	13.4	0	-2	-1.8	0	amino acid metabolism.degradation.glutamate family.proline	ALDH12A1 (Aldehyde dehydrogenase 12A1); 1-pyrroline-5-carboxylate dehydrogenase/ 3-chloroallyl aldehyde dehydrogenase Encodes mitochondrial Delta-pyrroline-5-  carboxylate dehydrogenase. Involved in the catabolism of proline to glutamate. Involved in pro
MSGI1_530	TC9152	4.1	11.7	22.5	10.8	0	0	-2.5	0	hormone metabolism.cytokinin.signal transduction	"AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2. similar to WOL (CYTOKININ RESPONSE 1) [Arabidopsis"
MSGI1_9928	TC9158	219.4	101.2	65.8	128.8	-1.1	1	1.7	0	protein.synthesis.misc ribososomal protein	EMB2386 (EMBRYO DEFECTIVE 2386); structural constituent of ribosome  Identical to 60S ribosomal protein L19-1 (RPL19A) [Arabidopsis Thaliana] (GB:Q9SRX2); similar to 60S ribosomal protein L19 (RPL19C) [Arabidopsis thaliana] (TAIR:AT4G02230.1); similar to
MSGI1_16639	TC9160	137	222.9	297.8	218.7	0	0	-1.1	0	not assigned.unknown	not assigned.unknown
MSGI1_19924	TC9164	68	25.5	187.4	122.9	-1.4	0	-1.5	-2.3	not assigned.unknown	not assigned.unknown
MSGI1_13179	TC9165	44.5	29.5	196.5	33.5	0	-2.6	-2.1	0	development.late embryogenesis abundant	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication. Identical to Putative desiccation-related prot
MSGI1_18020	TC9166	29.9	23.5	157.6	38.3	0	-2	-2.4	0	development.late embryogenesis abundant	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication. Identical to Putative desiccation-related prot
MSGI1_1481	TC9171	32.9	42.9	66.3	27.8	0	-1.3	0	0	cell wall	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G63370.1); similar to Os02g0602100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047355.1); similar to Os04g0488000 [Oryza sativa (japonica culti
MSGI1_1481	TC9171	32.9	42.9	66.3	27.8	0	-1.3	0	0	protein.postranslational modification	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G63370.1); similar to Os02g0602100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047355.1); similar to Os04g0488000 [Oryza sativa (japonica culti
MSGI1_18084	TC9177	158.2	126.9	489	225.6	0	-1.1	-1.6	0	"metal handling.binding, chelation and storage"	CCH (COPPER CHAPERONE) CCH protein belongs to a family of eukaryotic proteins that participate in  intracellular copper homeostasis by delivering this metal to the secretory pathway; mainly located along the vascular bundles of senescing leaves and petio
MSGI1_1685	TC918	6.9	8.2	129	1.4	0	-6.5	-4.2	0	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	"ASN1 (DARK INDUCIBLE 6) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumul"
MSGI1_6811	TC9183	8.6	34.9	54	2.5	2	-4.4	-2.7	3.8	signalling.MAP kinases	"MAPKKK13 (Mitogen-activated protein kinase kinase kinase 13); kinase member of MEKK subfamily similar to MAPKKK14 (Mitogen-activated protein kinase kinase kinase 14), kinase [Arabidopsis thaliana] (TAIR:AT2G30040.1); similar to Protein kinase domain cont"
MSGI1_11143	TC9184	8	29.2	51.2	2.9	1.9	-4.1	-2.7	3.3	signalling.MAP kinases	"MAPKKK13 (Mitogen-activated protein kinase kinase kinase 13); kinase member of MEKK subfamily similar to MAPKKK14 (Mitogen-activated protein kinase kinase kinase 14), kinase [Arabidopsis thaliana] (TAIR:AT2G30040.1); similar to Protein kinase domain cont"
MSGI1_9433	TC9186	16.1	24.9	105.3	15.6	0	-2.8	-2.7	0	protein.postranslational modification	AHG3/ATPP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA); protein binding / protein phosphatase type 2C Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA.
MSGI1_28817	TC9189	18.3	46.4	12.5	37.4	1.3	1.6	0	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G03040.1); similar to unknown [Solanum tuberosum] (GB:ABB16991.1); contains InterPro domain Hel
MSGI1_10678	TC9190	57.1	141.8	36.1	100.1	1.3	1.5	0	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G03040.1); similar to unknown [Solanum tuberosum] (GB:ABB16991.1); contains InterPro domain Hel
MSGI1_18614	TC9192	7.1	19.9	38.5	41.7	0	0	-2.4	0	not assigned.unknown	not assigned.unknown
MSGI1_8226	TC9194	6.7	32.3	58.2	22.4	2.3	-1.4	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_4187	TC9199	10.5	21	58.4	37.5	0	0	-2.5	0	not assigned.unknown	not assigned.unknown
MSGI1_7927	TC9208	19.1	33.7	60	16.8	0	-1.8	-1.7	0	RNA.regulation of transcription.MADS box transcription factor family	"AGL13 (AGAMOUS-LIKE 13); DNA binding / transcription factor  Identical to Agamous-like MADS-box protein AGL13 (AGL13) [Arabidopsis Thaliana] (GB:Q38837;GB:Q9M2F0); similar to AGL6 (AGAMOUS LIKE-6), DNA binding / transcription factor [Arabidopsis thaliana"
MSGI1_3214	TC9211	41.7	59.1	36.6	22.1	0	0	0	1.4	not assigned.unknown	not assigned.unknown
MSGI1_86405	TC9220	29.6	3	1.6	0.2	-3.3	0	4.2	0	not assigned.unknown	not assigned.unknown
MSGI1_7677	TC9221	352.2	27.2	72.6	44	-3.7	0	2.3	0	cell wall.modification	"ATEXPA5 (ARABIDOPSIS THALIANA EXPANSIN A5) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-A5 precursor (AtEXPA5) (Alpha-expansin-5) (At-EXP5) (AtEx5) (Ath-ExpAlpha-1.4) (EXP"
MSGI1_14036	TC9223	3.3	6.8	21.7	9.3	0	0	-2.7	0	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS6 (Arabidopsis thaliana trehalose phosphatase/synthase 6); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that"
MSGI1_15568	TC9224	5.2	21.2	24.2	5.8	0	-2.1	-2.2	0	cell wall	"ATTPS6 (Arabidopsis thaliana trehalose phosphatase/synthase 6); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that"
MSGI1_15568	TC9224	5.2	21.2	24.2	5.8	0	-2.1	-2.2	0	minor CHO metabolism.trehalose.potential TPS/TPP	"ATTPS6 (Arabidopsis thaliana trehalose phosphatase/synthase 6); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that"
MSGI1_2223	TC9227	3.2	83.7	6.5	72.5	4.7	3.5	0	0	amino acid metabolism.synthesis.glutamate family.arginine.arginosuccinate synthase	"arginosuccinate synthase family  Identical to Argininosuccinate synthase, chloroplast precursor (EC 6.3.4.5) (Citrulline--aspartate ligase) [Arabidopsis Thaliana] (GB:Q9SZX3;GB:Q8VZ47); similar to Ar (GB:ABE78918.1); similar to Os12g0235800 [Oryza sativa"
MSGI1_21938	TC9232	20.8	14.9	88.1	36.1	0	-1.3	-2.1	0	not assigned.unknown	not assigned.unknown
MSGI1_11284	TC9237	18.1	61.6	27.9	67.8	1.8	1.3	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	auxin-responsive protein-related  similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT3G60690.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE93517.1); similar to Os04g0537100 [Oryza sativa (japonica cultiva
MSGI1_11005	TC9243	38.6	23.1	11.3	13.6	0	0	1.8	0	misc. other Ferredoxins and Rieske domain	"ferredoxin family protein  similar to ATFD1 (FERREDOXIN 1), electron carrier/ iron ion binding [Arabidopsis thaliana] (TAIR:AT1G10960.1); similar to Os03g0685000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050923.1); similar to putative ferredoxin"
MSGI1_1242	TC9244	17.7	38	48.2	37.6	0	0	-1.4	0	protein.degradation.ubiquitin	ubiquitin-associated (UBA)/TS-N domain-containing protein  similar to H0413E07.5 [Oryza sativa (indica cultivar-group)] (GB:CAJ86152.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Ubiquitin; (InterPro:IPR000626); con
MSGI1_6447	TC9249	379.1	204	49.2	111	0	1.2	2.9	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S8 (RPS8B)  Identical to 40S ribosomal protein S8-2 (RPS8B) [Arabidopsis Thaliana] (GB:Q9FIF3); similar to 40S ribosomal protein S8 (RPS8A) [Arabidopsis thaliana] (TAIR:AT5G20290.1); similar to ribosomal protein S8 [Oryza sativa (jap
MSGI1_3536	TC9258	34.9	83.7	278.9	47.7	1.3	-2.5	-3	0	redox.thioredoxin	thioredoxin family protein  Identical to Thioredoxin-like 1 [Arabidopsis Thaliana] (GB:O64654); similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT2G33270.1); similar to thioredoxin (GB:AAA33400.1); contains InterPro domain Thioredoxin-l
MSGI1_5056	TC926	39.2	139.4	109.6	35.6	1.8	-1.6	-1.5	2	not assigned.unknown	not assigned.unknown
MSGI1_3447	TC9262	31.7	25.5	16.5	43.3	0	1.4	0	0	fermentation.LDH	"L-lactate dehydrogenase, putative  similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660"
MSGI1_35528	TC9267	0	0	97	192.1	0	1	-7.6	-8.6	not assigned.unknown	not assigned.unknown
MSGI1_7905	TC9268	0	0	124.5	174.6	0	0	-8	-8.4	not assigned.unknown	not assigned.unknown
MSGI1_6327	TC9272	4.3	10.3	41.3	37.8	0	0	-3.3	-1.9	misc.misc2	"epoxide hydrolase, putative  similar to epoxide hydrolase, putative [Arabidopsis thaliana] (TAIR:AT3G05600.1); similar to soluble epoxide hydrolase [Citrus jambhiri] (GB:BAD13534.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000"
MSGI1_10359	TC9276	44.8	50.2	57.9	17.6	0	-1.7	0	1.5	development.unspecified	nodulin MtN21 family protein  similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT4G08300.1); similar to Os10g0210500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064323.1); similar to unknown protein [Oryza sativa (japonica cult
MSGI1_10359	TC9276	44.8	50.2	57.9	17.6	0	-1.7	0	1.5	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_5800	TC9278	34.4	140.2	139.1	119	2	0	-2	0	not assigned.unknown	not assigned.unknown
MSGI1_5039	TC9279	17.7	49.1	63.9	20.4	1.5	-1.6	-1.9	1.3	protein.postranslational modification	protein phosphatase type 2C  similar to protein phosphatase 2C-related / PP2C-related [Arabidopsis thaliana] (TAIR:AT3G17250.1); similar to Protein phosphatase 2C [Medicago truncatula] (GB:ABE82399.1); contains InterPro domain Protein phosphatase 2C; (Int
MSGI1_6064	TC9284	202.2	53.8	125.6	162.1	-1.9	0	0	-1.6	amino acid metabolism.degradation.aspartate family.threonine	"ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase Encodes a glyoxalase I homolog ATGLX1. similar to lactoylglutathione lyase, putative / glyoxalase I, putative [Arabidopsis thaliana] (TAIR:AT1G67280.1); similar to Putative lactoylglutathione lyase"
MSGI1_6064	TC9284	202.2	53.8	125.6	162.1	-1.9	0	0	-1.6	Biodegradation of Xenobiotics.lactoylglutathione lyase	"ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase Encodes a glyoxalase I homolog ATGLX1. similar to lactoylglutathione lyase, putative / glyoxalase I, putative [Arabidopsis thaliana] (TAIR:AT1G67280.1); similar to Putative lactoylglutathione lyase"
MSGI1_2826	TC9286	127.4	0.9	17.7	0.9	-7.1	-4.3	2.8	0	misc.GDSL-motif lipase	"GDSL-motif lipase/hydrolase family protein  similar to ATLTL1/LTL1 (LI-TOLERANT LIPASE 1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT3G04290.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipo"
MSGI1_2826	TC9286	127.4	0.9	17.7	0.9	-7.1	-4.3	2.8	0	cell wall	"GDSL-motif lipase/hydrolase family protein  similar to ATLTL1/LTL1 (LI-TOLERANT LIPASE 1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT3G04290.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipo"
MSGI1_2826	TC9286	127.4	0.9	17.7	0.9	-7.1	-4.3	2.8	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_22291	TC9293	13.3	56.3	18.3	43.1	2.1	1.2	0	0	N-metabolism.nitrate metabolism.NR	"NIA1 (NITRATE REDUCTASE 1) Encodes the cytosolic minor isoform of nitrate reductase (NR). Involved in the first step of nitrate assimilation, it contributes about 15% of the nitrate reductase activity in shoots. Similar to molybdopterin oxidoreductases a"
MSGI1_5342	TC9294	84.9	114.2	33.8	118.2	0	1.8	1.3	0	cell wall	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14067.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_5342	TC9294	84.9	114.2	33.8	118.2	0	1.8	1.3	0	protein.degradation.subtilases	"subtilase family protein  similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14067.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1);"
MSGI1_2177	TC9297	41.9	86	125.6	79.8	1	0	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_12778	TC93	24.2	198.9	216.7	531.8	3	1.3	-3.2	-1.4	not assigned.unknown	not assigned.unknown
MSGI1_3351	TC9303	24.2	5.6	19.2	13.4	-2.1	0	0	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	basic helix-loop-helix (bHLH) family protein  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G26260.2); similar to TA1 protein [Oryza sativa (japonica cultivar-group)] (GB:CAE00874.1); similar to Os06g0275600 [Oryz
MSGI1_21211	TC9306	88.1	26	21.7	23.4	-1.8	0	2	0	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2A.4 (HTA12) [Arabidopsis Thaliana] (GB:Q9LZ46); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT5G59870.1); similar to Histone H2A (GB:Q9M531); contains InterPro domain Histone-fold;"
MSGI1_50077	TC9307	230.4	62.8	55.7	66.5	-1.9	0	2	0	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2A.4 (HTA12) [Arabidopsis Thaliana] (GB:Q9LZ46); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT5G59870.1); similar to Histone H2A (GB:Q9M531); contains InterPro domain Histone-fold;"
MSGI1_25489	TC9308	54.7	13.2	11.7	11.8	-2.1	0	2.2	0	DNA.synthesis/chromatin structure.histone	"histone H2A, putative  Identical to Probable histone H2A.4 (HTA12) [Arabidopsis Thaliana] (GB:Q9LZ46); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT5G59870.1); similar to Histone H2A (GB:Q9M531); contains InterPro domain Histone-fold;"
MSGI1_2713	TC9313	160.9	68.7	75.2	135.5	-1.2	0	1.1	0	cell wall	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G61820.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japoni
MSGI1_2713	TC9313	160.9	68.7	75.2	135.5	-1.2	0	1.1	0	protein.degradation.aspartate protease	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G61820.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japoni
MSGI1_952	TC932	37.7	91	104.9	71.3	1.3	0	-1.5	0	"lipid metabolism.'exotics' (steroids, squalene etc).phosphatidylcholine+sterol O-acyltransferase"	lecithin:cholesterol acyltransferase family protein / LACT family protein  similar to lecithin:cholesterol acyltransferase family protein / LACT family protein [Arabidopsis thaliana] (TAIR:AT3G03310.1); similar to lecithine cholesterol acyltransferase-lik
MSGI1_8315	TC9324	66.3	31.8	35.1	27.3	-1.1	0	0	0	not assigned.unknown	not assigned.unknown
MSGI1_15689	TC9329	50.6	122.6	76.7	83.1	1.3	0	0	0	stress.abiotic.touch/wounding	wound-responsive protein-related  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G01740.1); similar to wound-induced protein WI12 [Mesembryanthemum crystallinum] (GB:AAD23999.1); contains InterPro domain Wound-induced WI12; (InterPro:IPR009798
MSGI1_4448	TC9331	74.4	37.8	30.4	20.1	0	0	1.3	0	cell wall.precursor synthesis.GMD	"GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1); GDP-mannose 4,6-dehydratase GDP-D-mannose 4,6-dehydratase Identical to GDP-mannose 4,6 dehydratase 1 (EC 4.2.1.47) (GDP-D-mannose dehydratase 1) (GMD 1) (GMD1) [Arabidopsis Thaliana] (GB:Q9SNY3); similar to MUR1 (M"
MSGI1_795	TC9338	41	67.1	43.3	108.7	0	1.3	0	0	cell wall	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_795	TC9338	41	67.1	43.3	108.7	0	1.3	0	0	protein.degradation.subtilases	ARA12; subtilase subtilisin-like protease that has been  located in stem and siliques but not roots. Identical to Subtilisin-like protease precursor (EC 3.4.21.-) (Cucumisin-like serine protease) (ARA12) [Arabidopsis Thaliana] (GB:O65351;GB:P80854;GB:Q39
MSGI1_38996	TC9341	77.1	32.7	20.7	48.6	-1.2	1.2	1.9	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_38996	TC9341	77.1	32.7	20.7	48.6	-1.2	1.2	1.9	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_31339	TC9342	265.9	80.7	67.8	70.2	-1.7	0	2	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_31339	TC9342	265.9	80.7	67.8	70.2	-1.7	0	2	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_18800	TC9343	73.7	41.2	26.1	37.5	0	0	1.5	0	DNA.synthesis/chromatin structure.histone	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_18800	TC9343	73.7	41.2	26.1	37.5	0	0	1.5	0	cell.organisation	histone H4  Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana
MSGI1_15425	TC9354	76.1	42.6	38.9	49	0	0	1	0	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L21  Identical to 60S ribosomal protein L21-2 (RPL21F) [Arabidopsis Thaliana] (GB:Q9FDZ9); similar to 60S ribosomal protein L21 (RPL21E) [Arabidopsis thaliana] (TAIR:AT1G57660.1); similar to 60S ribosomal protein L21, putative, expr"
MSGI1_3846	TC9356	5	10	36.5	5.4	0	-2.8	-2.9	0	not assigned.unknown	not assigned.unknown
MSGI1_16444	TC9359	28.5	164	69.9	26.1	2.5	-1.4	-1.3	2.7	RNA.regulation of transcription.C2H2 zinc finger family	"C2H2; nucleic acid binding / transcription factor/ zinc ion binding putative c2h2 zinc finger transcription factor mRNA, similar to STZ (SALT TOLERANCE ZINC FINGER), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TA"
MSGI1_35104	TC9360	35.8	203.9	122.3	31	2.5	-2	-1.8	2.7	RNA.regulation of transcription.C2H2 zinc finger family	STZ (SALT TOLERANCE ZINC FINGER); nucleic acid binding / transcription factor/ zinc ion binding Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by
MSGI1_35104	TC9360	35.8	203.9	122.3	31	2.5	-2	-1.8	2.7	stress	STZ (SALT TOLERANCE ZINC FINGER); nucleic acid binding / transcription factor/ zinc ion binding Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by
MSGI1_9826	TC9361	69	45.8	24.8	14.6	0	0	1.5	1.6	cell wall	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_9826	TC9361	69	45.8	24.8	14.6	0	0	1.5	1.6	secondary metabolism.simple phenols	"LAC17 (laccase 17); copper ion binding / oxidoreductase putative laccase,  a member of laccase family of genes (17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1);"
MSGI1_3681	TC9364	9.2	26.2	46.3	51.2	0	0	-2.3	0	RNA.regulation of transcription.C3H zinc finger family	"zinc finger (CCCH-type) family protein  similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT4G29190.1); similar to Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE91976.1); contains InterPro domain Zinc finger, CCCH-type;"
MSGI1_907	TC9377	98.9	49.7	44.8	111.9	0	1.3	1.1	-1.2	PS.calvin cyle.rubisco interacting	"CPN60A (chloroplast / 60 kDa chaperonin alpha subunit); ATP binding / protein binding / unfolded protein binding Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding.  Mutants display aberrant chloroplast and embryo development."
MSGI1_6446	TC9378	92.4	44	49.3	75.4	-1.1	0	0	0	secondary metabolism.isoprenoids.tocopherol biosynthesis.MPBQ/MSBQ methyltransferase	"APG1 (ALBINO OR PALE GREEN MUTANT 1); methyltransferase Encodes a MPBQ/MSBQ methyltransferase located in the chloroplast inner envelope membrane.  Mutant plants lack plastoquinone (PQ), suggesting that the APG1 protein is involved in the methylation step"
MSGI1_2671	TC9379	48.7	24	19.3	37.6	0	0	1.3	0	tetrapyrrole synthesis.ALA dehydratase	"HEMB1; porphobilinogen synthase  Identical to Delta-aminolevulinic acid dehydratase, chloroplast precursor (EC 4.2.1.24) (Porphobilinogen synthase) (ALADH) [Arabidopsis Thaliana] (GB:Q9SFH9); similar to HEMB2, porphobilinogen synthase [Arabidopsis thalia"
MSGI1_2243	TC938	78	30.7	86.3	68.6	-1.3	0	0	-1.2	tetrapyrrole synthesis.magnesium chelatase	"CHLI2; magnesium chelatase encodes a second Chl I gene (CHLI2), a subunit of magnesium chelatase which is required for chlorophyll biosynthesis.  Protein not detectable in wild type and is targeted for rapid degradation in vivo. similar to CHLI1 (CHLORIN"
MSGI1_2756	TC9382	17.9	21.5	14.3	40.5	0	1.5	0	0	transport.peptides and oligopeptides	"proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G22540.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABE84933.1); con"
MSGI1_36749	TC9389	16.1	17	0	0	0	0	5	5.1	not assigned.unknown	not assigned.unknown
MSGI1_15146	TC9390	208.1	130.3	73.7	133	0	0	1.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L32 (RPL32A)  Identical to 60S ribosomal protein L32-1 (RPL32A) [Arabidopsis Thaliana] (GB:P49211;GB:Q8LC86;GB:Q9SVW1); similar to 60S ribosomal protein L32 (RPL32B) [Arabidopsis thaliana] (TAIR:AT5G46430.2); similar to ly200 protein
MSGI1_16791	TC9391	153.5	101.8	59	104.4	0	0	1.4	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L32 (RPL32A)  Identical to 60S ribosomal protein L32-1 (RPL32A) [Arabidopsis Thaliana] (GB:P49211;GB:Q8LC86;GB:Q9SVW1); similar to 60S ribosomal protein L32 (RPL32B) [Arabidopsis thaliana] (TAIR:AT5G46430.2); similar to ly200 protein
MSGI1_7256	TC9395	45.6	15.9	16.9	14	-1.5	0	1.4	0	cell wall	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41800.1); similar to Os03g0807700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051644.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); contains InterPro domain Galactose-binding l
MSGI1_3213	TC9398	103.3	66	50.2	56.8	0	0	1	0	TCA / org. transformation.other organic acid transformaitons.atp-citrate lyase	ACLB-1 (ATP-citrate lyase B-1) One of the two genes encoding subunit B of the trimeric enzyme ATP Citrate lyase similar to ACLB-2 (ATP-citrate lyase B-2) [Arabidopsis thaliana] (TAIR:AT5G49460.1); similar to ATP citrate lyase a-subunit [Lupinus albus] (G
MSGI1_468	TC94	27.7	28.9	9.9	5.2	0	0	0	2.5	not assigned.unknown	not assigned.unknown
MSGI1_22523	TC9404	98.5	263.9	1517.7	416.3	1.4	-1.9	-3.9	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT5G05960.1); similar to hypothetical protein [Plantago major]
MSGI1_47158	TC9405	143.2	364.2	1544.8	427.3	1.3	-1.9	-3.4	0	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT5G05960.1); similar to hypothetical protein [Plantago major]
MSGI1_2188	TC9406	20.4	10.8	41.9	41.9	0	0	0	-2	cell wall.degradation.mannan-xylose-arabinose-fucose	"(1-4)-beta-mannan endohydrolase, putative  similar to (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] (TAIR:AT5G66460.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAV44080.1); contains InterPro domain"
MSGI1_4827	TC9407	26.1	11.4	71.2	20.7	0	-1.8	-1.4	0	amino acid metabolism.degradation.glutamate family.arginine	"P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE); pyrroline-5-carboxylate reductase Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal"
MSGI1_4827	TC9407	26.1	11.4	71.2	20.7	0	-1.8	-1.4	0	amino acid metabolism.synthesis.glutamate family.proline.pyrroline-5-carboxylate reductase	"P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE); pyrroline-5-carboxylate reductase Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal"
MSGI1_1465	TC9411	31.3	63	83.4	57	1	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_1187	TC942	101	65.3	195.9	77.3	0	-1.3	0	0	cell wall	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G24530.1); similar to putative auxin growth promotor protein [Lycopersicon esculentum] (GB:AAK84479.1); similar to Os09g0412200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063155.1); con
MSGI1_1187	TC942	101	65.3	195.9	77.3	0	-1.3	0	0	hormone metabolism.auxin.induced-regulated-responsive-activated	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G24530.1); similar to putative auxin growth promotor protein [Lycopersicon esculentum] (GB:AAK84479.1); similar to Os09g0412200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063155.1); con
MSGI1_8225	TC9421	8.9	29.7	9.3	13.9	1.7	0	0	0	cell wall	"CLV1 (CLAVATA 1); ATP binding / kinase/ protein serine/threonine kinase Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negat"
MSGI1_8225	TC9421	8.9	29.7	9.3	13.9	1.7	0	0	0	signalling.receptor kinases.leucine rich repeat XI	"CLV1 (CLAVATA 1); ATP binding / kinase/ protein serine/threonine kinase Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negat"
MSGI1_4098	TC9423	73.9	13.3	13.9	5.2	-2.5	0	2.4	0	cell.organisation	"ACT3 (ACTIN 3); structural constituent of cytoskeleton Member of the Actin gene family. Expressed in mature pollen. Identical to Actin-1/3 (ACT3) [Arabidopsis Thaliana] (GB:P10671;GB:P53493;GB:Q9M351); similar to ACT11 (ACTIN-11), structural constituent"
MSGI1_6842	TC9428	77.2	219.3	134.5	84.2	1.5	0	0	1.4	metal handling	"auxin/aluminum-responsive protein, putative  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43830.1); similar to aluminum-induced [Brassica napus] (GB:BAA25999.1); contains domain ASPARAGINE SYNTHETASE (PTHR11772); contains domain no descrip"
MSGI1_7066	TC9434	70.1	28	16.8	22.3	-1.3	0	2.1	0	cell wall.modification	"XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9); hydrolase, acting on glycosyl bonds encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and"
MSGI1_3084	TC9435	23.1	13.3	44.6	57.7	0	0	0	-2.1	minor CHO metabolism.others	aldose 1-epimerase family protein  similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT3G47800.1); similar to Galactose mutarotase-like [Medicago truncatula] (GB:ABE90391.1); contains InterPro domain Galactose mutarotase-like; (Int
MSGI1_58246	TC9436	29.5	33.8	10.1	31	0	1.6	0	0	not assigned.unknown	not assigned.unknown
MSGI1_4999	TC944	438.1	215.8	278.8	309.9	-1	0	0	0	PS.lightreaction.photosystem I.PSI polypeptide subunits	"PSAE-2 (photosystem I subunit E-2) Encodes subunit E of photosystem I. Identical to Photosystem I reaction center subunit IV B, chloroplast precursor (PSI-E B) (PSAE2) [Arabidopsis Thaliana] (GB:Q9S714); similar to PSAE-1 (PSA E1 KNOCKOUT) [Arabidopsis t"
MSGI1_9214	TC9441	15	12.7	44.1	13.1	0	-1.8	-1.6	0	"lipid metabolism.'exotics' (steroids, squalene etc)"	sterol carrier protein 2 (SCP-2) family protein  similar to Sterol-binding [Medicago truncatula] (GB:ABE88913.1); contains InterPro domain Sterol-binding; (InterPro:IPR003033)
MSGI1_13263	TC9444	32.2	13	48.3	6.3	0	-2.9	0	0	signalling.in sugar and nutrient physiology	"photoassimilate-responsive protein-related  similar to photoassimilate-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT5G52390.1); similar to NtEIG-E80 [Nicotiana tabacum] (GB:BAB16427.1); contains InterPro domain PAR1; (InterPro:IPR009489)"
MSGI1_16683	TC9445	65.7	19.9	19.2	22.9	-1.7	0	1.8	0	protein.synthesis.misc ribososomal protein	"ribosomal protein L18 family protein  Identical to 50S ribosomal protein L18, chloroplast precursor (CL18) (RPL18) [Arabidopsis Thaliana] (GB:Q9SX68); similar to ribosomal protein L18 family protein [Arabidopsis thaliana] (TAIR:AT1G14205.1); similar to O"
MSGI1_27203	TC945	0.2	75.2	28.5	306.4	8.6	3.4	-7.2	-2	not assigned.unknown	not assigned.unknown
MSGI1_13301	TC9451	10	10.4	328.2	11.8	0	-4.8	-5	0	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	ATHVA22E (Arabidopsis thaliana HVA22 homologue E) Encodes one of five HVA22 homologs in Arabidopsis.  HVA22 is an ABA- and stress-inducible gene first isolated from barley.  Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is
MSGI1_5832	TC9453	61.4	30.5	15.6	20.9	0	0	2	0	secondary metabolism.phenylpropanoids.lignin biosynthesis.CCoAOMT	"caffeoyl-CoA 3-O-methyltransferase, putative  Identical to Probable caffeoyl-CoA O-methyltransferase At4g34050 (EC 2.1.1.104) (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) [Arabidopsis Thaliana] (GB:O49499;GB:Q8L989); similar to caffeoyl-"
MSGI1_1891	TC9457	13.3	40.6	15.4	24.7	1.6	0	0	0	"RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family"	basic helix-loop-helix (bHLH) family protein  similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT5G48560.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE85937.1); similar to Os01g0915600 [Oryza
MSGI1_21311	TC946	0.2	84.9	37.2	343.6	8.7	3.2	-7.5	-2	not assigned.unknown	not assigned.unknown
MSGI1_3429	TC9460	45	35.9	77.7	33.1	0	-1.2	0	0	cell.organisation	ABI1L1 (ABI-1-LIKE 1) Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. Identical to Protein ABIL1 (Abl interactor-like protein 1) (AtABIL1
MSGI1_2718	TC947	19.5	59.9	27.9	21.1	1.6	0	0	1.5	cell wall	"protein kinase, putative  similar to kinase [Arabidopsis thaliana] (TAIR:AT5G35580.1); similar to Avr9/Cf-9 induced kinase 1 [Nicotiana tabacum] (GB:AAP03880.2); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain"
MSGI1_2718	TC947	19.5	59.9	27.9	21.1	1.6	0	0	1.5	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-N
MSGI1_2718	TC947	19.5	59.9	27.9	21.1	1.6	0	0	1.5	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	"protein kinase, putative  similar to kinase [Arabidopsis thaliana] (TAIR:AT5G35580.1); similar to Avr9/Cf-9 induced kinase 1 [Nicotiana tabacum] (GB:AAP03880.2); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain"
MSGI1_6250	TC9475	14	41.8	21.1	39.9	1.6	0	0	0	protein.degradation.ubiquitin.E3.RING	zinc finger (C3HC4-type RING finger) family protein  Identical to RING-H2 finger protein ATL1Q (ATL1Q) [Arabidopsis Thaliana] (GB:Q8LBA0;GB:Q94A26;GB:Q9CA72); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5
MSGI1_5752	TC9476	22.9	12.2	49.4	8.6	0	-2.5	0	0	secondary metabolism.phenylpropanoids	cinnamoyl-CoA reductase-related  similar to cinnamoyl-CoA reductase-related [Arabidopsis thaliana] (TAIR:AT4G30470.1); similar to Ribosome-binding factor A [Medicago truncatula] (GB:ABE85146.1); contains InterPro domain NAD-dependent epimerase/dehydratase
MSGI1_6708	TC948	87	45.3	21.1	58.3	0	1.5	2	0	RNA.regulation of transcription.unclassified	"guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative  similar to guanine nucleotide-binding family protein / activated protein kinase C receptor (RACK1) [Arabidopsis thaliana] (TAIR:AT3G18130.1); simi"
MSGI1_6708	TC948	87	45.3	21.1	58.3	0	1.5	2	0	signalling.G-proteins	"guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative  similar to guanine nucleotide-binding family protein / activated protein kinase C receptor (RACK1) [Arabidopsis thaliana] (TAIR:AT3G18130.1); simi"
MSGI1_2432	TC9481	99.7	54.5	37.6	82.9	0	1.1	1.4	0	tetrapyrrole synthesis.GSA	"GSA2 (GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE 2); glutamate-1-semialdehyde 2,1-aminomutase  Identical to Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplast precursor (EC 5.4.3.8) (GSA 2) (Glutamate-1-semialdehyde aminotransferase 2) (GSA-AT 2) (GSA"
MSGI1_14164	TC9488	66.7	42.7	33.1	54.9	0	0	1	0	stress.biotic	disease resistance response  similar to disease resistance-responsive protein-related / dirigent protein-related [Arabidopsis thaliana] (TAIR:AT5G49040.1); similar to disease resistance-responsive family protein [Arachis hypogaea] (GB:AAZ20288.1); similar
MSGI1_3457	TC949	391.3	204.4	104	245.4	0	1.2	1.9	0	protein.postranslational modification	"guanine nucleotide-binding family protein / activated protein kinase C receptor (RACK1)  similar to guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative [Arabidopsis thaliana] (TAIR:AT1G48630.1); simi"
MSGI1_32367	TC9490	15.7	38.7	101.8	39	0	-1.4	-2.7	0	not assigned.unknown	not assigned.unknown
MSGI1_3493	TC9491	24	57.9	40.8	31.2	1.3	0	0	0	OPP.non-reductive PP.ribose 5-phosphate isomerase	RSW10 (RADIAL SWELLING 10); ribose-5-phosphate isomerase Encodes a ribose 5-phosphate isomerase involved in the formation of uridine used for the synthesis of UDP-sugars. Mutants of this gene are affected in cellulose biosynthesis. similar to ribose-5-pho
MSGI1_3493	TC9491	24	57.9	40.8	31.2	1.3	0	0	0	PS.calvin cyle.Rib5P Isomerase	RSW10 (RADIAL SWELLING 10); ribose-5-phosphate isomerase Encodes a ribose 5-phosphate isomerase involved in the formation of uridine used for the synthesis of UDP-sugars. Mutants of this gene are affected in cellulose biosynthesis. similar to ribose-5-pho
MSGI1_9115	TC950	97.4	147.5	222.6	205.9	0	0	-1.2	0	protein.synthesis.initiation	EIF-5A (eukaryotic translation initiation factor 5A-1); translation initiation factor Encodes eukaryotic translation initiation factor 5A (EIF-5A). Identical to Eukaryotic translation initiation factor 5A-1 (eIF-5A-1) [Arabidopsis Thaliana] (GB:Q9XI91;GB
MSGI1_4640	TC9505	8.3	43.2	18.9	36.1	2.4	0	0	0	signalling.receptor kinases.leucine rich repeat XI	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G09970.1); similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine ki"
MSGI1_4640	TC9505	8.3	43.2	18.9	36.1	2.4	0	0	0	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G09970.1); similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine ki"
MSGI1_2962	TC9506	143.5	34.5	72.6	30.5	-2.1	-1.3	1	0	cell wall	aspartyl protease family protein  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G37540.1); similar to Os01g0844500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044781.1); similar to Aspartic proteinase nepenthesin-1 pr
MSGI1_4391	TC9509	16.7	25	625	12.8	0	-5.6	-5.2	0	"RNA.regulation of transcription.HB,Homeobox transcription factor family"	ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 1); transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Loss of function mutant has abnormally shaped leaves and stems. Identical to Homeobox-leucine zipper protein ATHB-12
MSGI1_50301	TC951	21.7	35.5	0	0.2	0	0	5.4	7.5	not assigned.unknown	not assigned.unknown
MSGI1_6646	TC9511	174.8	55.7	79.3	59	-1.6	0	1.1	0	cell wall.cell wall proteins.AGPs	FLA7 (FLA7) fasciclin-like arabinogalactan-protein 7 (Fla7) Identical to Fasciclin-like arabinogalactan protein 7 precursor (FLA7) [Arabidopsis Thaliana] (GB:Q9SJ81;GB:Q8LG01); similar to FLA12 (fasciclin-like arabinogalactan-protein 12) [Arabidopsis thal
MSGI1_2156	TC9513	257	131.9	70.1	128.9	0	0	1.9	0	cell wall	"calreticulin 2 (CRT2)  Identical to Calreticulin-2 precursor (CRT2) [Arabidopsis Thaliana] (GB:Q38858;GB:O04152;GB:O80486); similar to CRT1 (CALRETICULIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT1G56340.1); similar to calreticulin-1 [Glycin"
MSGI1_2156	TC9513	257	131.9	70.1	128.9	0	0	1.9	0	signalling.calcium	"calreticulin 2 (CRT2)  Identical to Calreticulin-2 precursor (CRT2) [Arabidopsis Thaliana] (GB:Q38858;GB:O04152;GB:O80486); similar to CRT1 (CALRETICULIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT1G56340.1); similar to calreticulin-1 [Glycin"
MSGI1_24029	TC9514	133.5	58.6	64.9	68.1	-1.2	0	1	0	not assigned.unknown	not assigned.unknown
MSGI1_11386	TC9516	16.4	82.7	50.1	106.7	2.3	1.1	-1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_4511	TC9517	64.5	111.1	136.5	116.1	0	0	-1.1	0	glycolysis.enolase	LOS2 (Low expression of osmotically responsive genes 1); phosphopyruvate hydratase Involved in light-dependent cold tolerance and encodes an enolase. Identical to Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase) (2-phospho-D- glycerate hydro-lyase)
MSGI1_15759	TC9522	51.8	170.3	64.7	48.7	1.7	0	0	1.8	not assigned.unknown	not assigned.unknown
MSGI1_5010	TC9529	17.7	32.7	13.3	10.7	0	0	0	1.6	RNA.regulation of transcription.WRKY domain transcription factor family	TTR1 (WRKY domain family protein 16); transcription factor Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. Identical to Probable WRKY transcription factor 16 (WRKY DNA-binding protein 16)
MSGI1_5010	TC9529	17.7	32.7	13.3	10.7	0	0	0	1.6	stress.biotic	"disease resistance protein (TIR-NBS-LRR class), putative  similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G17680.1); similar to TIR-NBS type disease resistance protein [Populus trichocarpa] (GB:ABF81459"
MSGI1_15917	TC9530	7.5	13.7	35.1	59.2	0	0	-2.2	-2.1	protein.degradation.serine protease	"SCPL31 (serine carboxypeptidase-like 31); serine carboxypeptidase  similar to SCPL30 (serine carboxypeptidase-like 30), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT4G15100.1); similar to serine carboxypeptidase S10 family protein [Arabidopsis"
MSGI1_15917	TC9530	7.5	13.7	35.1	59.2	0	0	-2.2	-2.1	cell wall	"SCPL31 (serine carboxypeptidase-like 31); serine carboxypeptidase  similar to SCPL30 (serine carboxypeptidase-like 30), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT4G15100.1); similar to serine carboxypeptidase S10 family protein [Arabidopsis"
MSGI1_6527	TC9539	37.2	25.2	7.7	13.9	0	0	2.3	0	development.storage proteins	"PLA IIIA/PLP7 (Patatin-like protein 7)  similar to PLA IIB/PLP6 (Patatin-like protein 6), nutrient reservoir [Arabidopsis thaliana] (TAIR:AT2G39220.1); similar to putative lipid acyl hydrolase [Oryza sativa] (GB:AAK72885.1); similar to Os03g0254400 [Oryz"
MSGI1_3353	TC9543	5.4	33.1	9.8	20.6	2.6	0	0	0	RNA.regulation of transcription.GRAS transcription factor family	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_3353	TC9543	5.4	33.1	9.8	20.6	2.6	0	0	0	development.unspecified	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_3680	TC9544	53.9	19.3	18.2	18.7	-1.5	0	1.6	0	secondary metabolism.flavonoids.dihydroflavonols.dihydrokaempferol 4-reductase	DFR (DIHYDROFLAVONOL 4-REDUCTASE); dihydrokaempferol 4-reductase dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins. Identical to Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR) (D
MSGI1_1881	TC9545	47.2	8.2	10.1	16.4	-2.5	0	2.2	0	RNA.regulation of transcription.putative transcription regulator	"pepsin A  similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G54400.1); similar to Peptidase A1, pepsin [Medicago truncatula] (GB:ABE83791.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro"
MSGI1_50300	TC9550	28.5	10.6	7.9	7.7	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_20029	TC9559	0.3	0.5	16.2	16.7	0	0	-5.8	-5.1	not assigned.unknown	not assigned.unknown
MSGI1_9238	TC9563	91.4	53.8	38.9	59.4	0	0	1.2	0	protein.synthesis.misc ribososomal protein	"RPL16B (ribosomal protein L16B); structural constituent of ribosome encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root and shoot apical meristems and in lateral root primordia. Expr"
MSGI1_394	TC9567	50.3	139.2	94.2	112.4	1.5	0	0	0	transport.peptides and oligopeptides	"ATOPT3 (OLIGOPEPTIDE TRANSPORTER); oligopeptide transporter oligopeptide transporter similar to ATOPT2 (oligopeptide transporter 2), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT1G09930.1); similar to ATOPT4 (oligopeptide transporter 4), oligo"
MSGI1_2763	TC9569	42.7	40.8	73.3	34.9	0	-1.1	0	0	amino acid metabolism.synthesis.aromatic aa.phenylalanine and tyrosine	"aminotransferase class I and II family protein  similar to AAT/ATAAT/MEE17 (maternal effect embryo arrest 17), aspartate transaminase [Arabidopsis thaliana] (TAIR:AT2G22250.3); similar to aspartate aminotransferase [Anabaena variabilis ATCC 29413] (GB:YP"
MSGI1_3788	TC9571	30.9	19.2	59.3	64.7	0	0	0	-1.8	cell wall.degradation.mannan-xylose-arabinose-fucose	"(1-4)-beta-mannan endohydrolase, putative  similar to (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] (TAIR:AT5G66460.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAV44080.1); contains InterPro domain"
MSGI1_2379	TC9576	19	3.7	22.7	14.5	-2.4	0	0	0	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	"LOX2 (LIPOXYGENASE 2) Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection. Identical to Lipoxygenase, chloroplast precur"
MSGI1_2741	TC9579	29.9	29.6	7.6	19.6	0	0	2	0	cell wall	nucleic acid binding  similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G20220.1); similar to Os09g0542000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063818.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71254.1); c
MSGI1_2741	TC9579	29.9	29.6	7.6	19.6	0	0	2	0	RNA.regulation of transcription.putative transcription regulator	nucleic acid binding  similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G20220.1); similar to Os09g0542000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063818.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71254.1); c
MSGI1_15805	TC9595	320.2	148.5	99.9	168.9	-1.1	0	1.7	0	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L27A (RPL27aC)  Identical to 60S ribosomal protein L27a-3 (RPL27AC) [Arabidopsis Thaliana] (GB:P49637;GB:Q8LE80); similar to RPL27A (RIBOSOMAL PROTEIN L27A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G23290."
MSGI1_28449	TC9596	180	100.4	48.9	90.9	0	0	1.9	0	protein.synthesis.misc ribososomal protein	"60S ribosomal protein L27A (RPL27aC)  Identical to 60S ribosomal protein L27a-3 (RPL27AC) [Arabidopsis Thaliana] (GB:P49637;GB:Q8LE80); similar to RPL27A (RIBOSOMAL PROTEIN L27A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G23290."
MSGI1_3620	TC9597	28.1	20.6	91	19.7	0	-2.2	-1.7	0	cell wall	ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding. Identical to NAC domain-containing protein 2 (
MSGI1_3620	TC9597	28.1	20.6	91	19.7	0	-2.2	-1.7	0	cell wall	ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding. Identical to NAC domain-containing protein 2 (
MSGI1_3620	TC9597	28.1	20.6	91	19.7	0	-2.2	-1.7	0	RNA.regulation of transcription.NAC domain transcription factor family	ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding. Identical to NAC domain-containing protein 2 (
MSGI1_3620	TC9597	28.1	20.6	91	19.7	0	-2.2	-1.7	0	development.unspecified	ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding. Identical to NAC domain-containing protein 2 (
MSGI1_3241	TC9599	5.5	36.2	6.6	45.7	2.7	2.8	0	0	gluconeogenese/ glyoxylate cycle.PEPCK	"phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putative Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent). Identical to Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP carboxykinase)"
MSGI1_9927	TC9604	28.8	26.8	13.5	47.3	0	1.8	0	0	secondary metabolism.flavonoids.chalcones	TT5 (TRANSPARENT TESTA 5); chalcone isomerase Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems. Identical to Chalcone--flavonone isomerase (EC 5.5.1.6) (Chalcone isomerase) (TR
MSGI1_16852	TC9607	26.3	32.4	69.6	36.5	0	0	-1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_5866	TC9610	51.7	4	26.6	19.6	-3.7	0	0	-2.3	"misc.gluco-, galacto- and mannosidases"	"glycosyl hydrolase family 1 protein  similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G54570.1); similar to Os03g0212800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049358.1); similar to beta-glucosidase, putative [Me"
MSGI1_14510	TC9614	112.4	50.4	64	73.5	-1.2	0	0	0	PS.lightreaction.other electron carrier (ox/red).ferredoxin	"FED A (FERREDOXIN 2); electron carrier/ iron ion binding encodes a ferredoxin gene Identical to Ferredoxin-1, chloroplast precursor (PETF1) [Arabidopsis Thaliana] (GB:P16972); similar to ATFD1 (FERREDOXIN 1), electron carrier/ iron ion binding [Arabidops"
MSGI1_11765	TC9615	48.8	13.3	42.8	36.6	-1.9	0	0	-1.5	not assigned.unknown	not assigned.unknown
MSGI1_2791	TC9617	91	232.8	313.2	319.2	1.4	0	-1.8	0	RNA.regulation of transcription.C2H2 zinc finger family	DNAJ heat shock N-terminal domain-containing protein  similar to DNAJ heat shock N-terminal domain-containing protein / cell division protein-related [Arabidopsis thaliana] (TAIR:AT3G11450.1); similar to DnaJ domain containing protein [Tetrahymena thermo
MSGI1_2791	TC9617	91	232.8	313.2	319.2	1.4	0	-1.8	0	stress.abiotic.heat	ATJ3 (Arabidopsis thaliana DnaJ homologue 3) homologous to the co-chaperon DNAJ protein from E coli Identical to Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) (ATJ3) [Arabidopsis Thaliana] (GB:Q94AW8;GB:O22663;GB:Q42530); similar to ATJ2 (Arabidopsis thaliana
MSGI1_13493	TC9619	104.5	32.6	38.3	39.2	-1.7	0	1.4	0	protein.synthesis.mito/plastid ribosomal protein.plastid	"EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome  Identical to 50S ribosomal protein L6, chloroplast precursor (RPL6) [Arabidopsis Thaliana] (GB:O23049); similar to ribosomal protein L6 family protein [Arabidopsis thaliana] (TAIR:AT2G1"
MSGI1_3745	TC9623	8.7	10.3	53	5.8	0	-3.2	-2.6	0	not assigned.unknown	not assigned.unknown
MSGI1_9688	TC9624	96.3	39.4	43.3	57.2	-1.3	0	1.2	0	protein.synthesis.misc ribososomal protein	"EMB1473 (EMBRYO DEFECTIVE 1473); structural constituent of ribosome  Identical to 50S ribosomal protein L13, chloroplast precursor (CL13) (RPL13) [Arabidopsis Thaliana] (GB:Q9SYL9); similar to ribosomal protein L13 family protein [Arabidopsis thaliana] ("
MSGI1_6146	TC9627	52.6	59.6	82.6	36.5	0	-1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_3646	TC9634	8.9	22.4	43	19.6	0	0	-2.3	0	nucleotide metabolism.deoxynucleotide metabolism.uridylyl transferase	"ACR6 (ACT Domain Repeat 6) Member of a small family of ACT domain containing proteins in Arabidopsis. ACT domains are involved in amino acid binding. similar to ACR4 (ACT REPEAT 4), amino acid binding [Arabidopsis thaliana] (TAIR:AT1G69040.2); similar to"
MSGI1_26212	TC964	23.9	53.3	0	0	1.2	0	5.6	6.7	not assigned.unknown	not assigned.unknown
MSGI1_2261	TC965	35.2	73.4	41.7	51.8	1.1	0	0	0	signalling.calcium	"IQD21 (IQ-domain 21); calmodulin binding  similar to IQD3 (IQ-domain 3), calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G52290.1); similar to IQ calmodulin-binding motif, putative [Medicago truncatula] (GB:ABE77889.1); similar to Os08g0115200 [Oryza"
MSGI1_3783	TC9657	161.7	104.7	81.5	222.1	0	1.4	1	-1.1	RNA.RNA binding	"nuclear RNA-binding protein (RGGA)  similar to nuclear RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G47210.1); similar to nuclear RNA binding protein A [Spinacia oleracea] (GB:AAF14244.1); contains InterPro domain Hyaluronan/mRNA binding"
MSGI1_6063	TC9658	19	202.3	26.3	62.2	3.4	1.2	0	1.7	signalling.receptor kinases.DUF 26	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G21400.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G00970.1); similar to receptor-like protein kinase homolog RK20-1
MSGI1_3042	TC9678	34	2.8	11.2	2.8	-3.6	0	1.6	0	secondary metabolism.phenylpropanoids	transferase family protein  similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G07850.1); similar to N-hydroxycinnamoyl/benzoyltransferase 6 [Glycine max] (GB:ABC47848.1); contains InterPro domain Transferase; (InterPro:IPR003480)
MSGI1_1965	TC9679	3	26.5	4.7	15.8	3.1	0	0	0	protein.degradation.ubiquitin.E3.RING	armadillo/beta-catenin repeat family protein / U-box domain-containing family protein  similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G27910.1); similar to armadillo/beta-catenin repeat family protein / U-box domain-containing
MSGI1_26350	TC9684	40.6	12.9	31.5	43.5	-1.7	0	0	-1.8	not assigned.unknown	not assigned.unknown
MSGI1_7255	TC9685	61.7	52.6	75.7	30	0	-1.3	0	0	RNA.regulation of transcription.putative transcription regulator	"DNA-binding family protein / remorin family protein  similar to DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT2G45820.1); similar to DNA-binding protein (GB:AAA57124.1); contains InterPro domain Remorin, N-terminal region; (InterPro:IPR005"
MSGI1_21245	TC9687	463.8	221.8	130.2	252.4	-1.1	1	1.8	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L13A (RPL13aD)  Identical to 60S ribosomal protein L13a-4 (RPL13AD) [Arabidopsis Thaliana] (GB:Q9FKC0;GB:Q42084); similar to 60S ribosomal protein L13A (RPL13aA) [Arabidopsis thaliana] (TAIR:AT3G07110.1); similar to 60S ribosomal pr
MSGI1_9666	TC9697	105.1	63.4	50.6	65.3	0	0	1.1	0	signalling.G-proteins	"RAB11 (ARABIDOPSIS RAB GTPASE HOMOLOG A1B); GTP binding small GTP-binding protein (Rab11)similar to YPT3/RAB11 proteins in yeast and mammals, respectively. YPT3/RAB11 is involved in intracellular protein trafficking. Identical to Ras-related protein Rab1"
MSGI1_2883	TC9698	9.4	18.7	35.7	17.2	0	0	-1.9	0	protein.degradation.cysteine protease	OTU-like cysteine protease family protein  similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT5G04250.1); similar to OTU-like cysteine protease-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22968.1); similar to Os0
MSGI1_6045	TC97	85.6	26.2	80.3	111.5	-1.7	0	0	-2.1	PS.lightreaction.photosystem II.PSII polypeptide subunits	"CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding Subunit of light-harvesting complex II (LHCII),which absorbs light and transfers energy to the photosynthetic reaction center. Identical to Chlorophyll a-b binding protein 2, chloroplast precu"
MSGI1_2297	TC9704	39.2	11.2	6.9	6.5	-1.8	0	2.5	0	"misc.gluco-, galacto- and mannosidases"	"glycosyl hydrolase family 9 protein  Identical to Endoglucanase 17 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 17) [Arabidopsis Thaliana] (GB:O81416); similar to ATCEL2 (Arabidopsis thaliana Cellulase 2), hydrolase, hydrolyzing O-glycosyl compounds ["
MSGI1_2297	TC9704	39.2	11.2	6.9	6.5	-1.8	0	2.5	0	cell wall	"glycosyl hydrolase family 9 protein  Identical to Endoglucanase 17 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 17) [Arabidopsis Thaliana] (GB:O81416); similar to ATCEL2 (Arabidopsis thaliana Cellulase 2), hydrolase, hydrolyzing O-glycosyl compounds ["
MSGI1_2297	TC9704	39.2	11.2	6.9	6.5	-1.8	0	2.5	0	cell wall	"glycosyl hydrolase family 9 protein  Identical to Endoglucanase 17 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 17) [Arabidopsis Thaliana] (GB:O81416); similar to ATCEL2 (Arabidopsis thaliana Cellulase 2), hydrolase, hydrolyzing O-glycosyl compounds ["
MSGI1_2297	TC9704	39.2	11.2	6.9	6.5	-1.8	0	2.5	0	"cell wall.degradation.cellulases and beta -1,4-glucanases"	"glycosyl hydrolase family 9 protein  Identical to Endoglucanase 17 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 17) [Arabidopsis Thaliana] (GB:O81416); similar to ATCEL2 (Arabidopsis thaliana Cellulase 2), hydrolase, hydrolyzing O-glycosyl compounds ["
MSGI1_5958	TC9706	43.7	14.2	14.4	24.8	-1.6	0	1.6	0	protein.folding	"CPN20 (CHAPERONIN 20); calmodulin binding Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES. Identical to 20 kDa chaperonin, chloroplast precursor (Protein Cpn21) (Chloroplast protein Cpn10) (Chloroplast chaperonin 1"
MSGI1_16296	TC9709	12.3	16.7	43.5	43.6	0	0	-1.8	-1.4	misc.acid and other phosphatases	SIT4 phosphatase-associated family protein  similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT2G28360.1); similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT3G45190.1); similar to SIT4 p
MSGI1_2997	TC9710	8.3	33.6	17.3	43.4	2	1.3	0	0	cell wall	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G10290.1); similar to Protein kinase [Medicago truncatula] (GB:ABE86996.1); contains"
MSGI1_2997	TC9710	8.3	33.6	17.3	43.4	2	1.3	0	0	signalling.receptor kinases.leucine rich repeat II	"leucine-rich repeat transmembrane protein kinase, putative  similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G10290.1); similar to Protein kinase [Medicago truncatula] (GB:ABE86996.1); contains"
MSGI1_1712	TC9717	87.7	40.4	27.6	44	-1.1	0	1.7	0	secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA synthase	BAP1 (hydroxymethylglutaryl-CoA synthase); acetyl-CoA C-acetyltransferase/ hydroxymethylglutaryl-CoA synthase Encodes a protein with hydroxymethylglutaryl-CoA synthase activity which was characterized by phenotypical complementation of the S. cerevisiae
MSGI1_14294	TC9719	15.5	5.6	53	13.5	0	-2	-1.8	0	transport.peptides and oligopeptides	"proton-dependent oligopeptide transport (POT) family protein  similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G16180.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32296.1); sim"
MSGI1_3161	TC972	12.4	38.2	58.2	44	1.6	0	-2.2	0	misc.cytochrome P450	"CYP71A26 (cytochrome P450, family 71, subfamily A, polypeptide 26); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71A26 (EC 1.14.-.-) (CYP71A26) [Arabidopsis Thaliana] (GB:Q9STK7); similar to CYP71A22 (cytochrome P450, family 71, s"
MSGI1_15876	TC9721	64.1	69.9	37	30.4	0	0	0	1.2	not assigned.unknown	not assigned.unknown
MSGI1_6980	TC9723	12.3	16.3	110.3	11.3	0	-3.3	-3.2	0	not assigned.unknown	not assigned.unknown
MSGI1_8361	TC9728	8.2	11.9	63.7	15.1	0	-2.1	-3	0	not assigned.unknown	not assigned.unknown
MSGI1_27202	TC9734	0	0	11.7	13.8	0	0	-4.5	-4.8	signalling.calcium	"CPK4 (calcium-dependent protein kinase 4); calcium- and calmodulin-dependent protein kinase/ kinase Encodes a member of Calcium Dependent Protein Kinase (CDPK) gene family. similar to ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2), calcium- and calmodulin-"
MSGI1_10299	TC9740	8.2	31.1	15.4	28.3	1.9	0	0	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_10299	TC9740	8.2	31.1	15.4	28.3	1.9	0	0	0	transport.sulphate	"AST91 (SULFATE TRANSPORTER 91); sulfate transporter Encodes AST91 mRNA for sulfate transporter. Identical to Probable sulfate transporter 3.3 (AST91) (SULTR3;3) [Arabidopsis Thaliana] (GB:Q9SXS2;GB:O49307); similar to SULTR3,4 (SULTR3,4), sulfate transpo"
MSGI1_5552	TC9745	42.2	36.7	13.6	16.4	0	0	1.6	0	transport.metabolite transporters at the mitochondrial membrane	dicarboxylate/tricarboxylate carrier (DTC)  similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT2G22500.1); similar to Mitochondrial carrier protein [Medicago truncatula] (GB:ABE79078.1); similar to oxoglutarate malate
MSGI1_5650	TC9746	10.3	2	145.8	4.1	0	-5.2	-3.8	0	transporter.sugars	"ATINT2 (INOSITOL TRANSPORTER 2); carbohydrate transporter/ sugar porter  Identical to Probable inositol transporter 2 (INT2) [Arabidopsis Thaliana] (GB:Q9C757); similar to ATINT3 (INOSITOL TRANSPORTER 3), carbohydrate transporter/ sugar porter [Arabidops"
MSGI1_1498	TC9747	9	30.1	13.2	16.8	1.7	0	0	0	transport.amino acids	"CAT2 (CATIONIC AMINO ACID TRANSPORTER 2); amino acid transporter Arabidopsis thaliana amino acid permease family protein (At1g58030) similar to CAT4 (CATIONIC AMINO ACID TRANSPORTER 4), cationic amino acid transporter [Arabidopsis thaliana] (TAIR:AT3G037"
MSGI1_791	TC9752	14.2	34.9	5.6	28.3	0	2.3	0	0	cell wall	"BRL2 (BRI1-LIKE 2); ATP binding / protein serine/threonine kinase Similar to BRI, brassinosteroid receptor protein. Identical to Serine/threonine-protein kinase BRI1-like 2 precursor (EC 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2) (Protein V"
MSGI1_791	TC9752	14.2	34.9	5.6	28.3	0	2.3	0	0	hormone metabolism.brassinosteroid.signal transduction.BRI	"BRL2 (BRI1-LIKE 2); ATP binding / protein serine/threonine kinase Similar to BRI, brassinosteroid receptor protein. Identical to Serine/threonine-protein kinase BRI1-like 2 precursor (EC 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2) (Protein V"
MSGI1_11344	TC9753	12.3	5	69.3	14.4	0	-2.3	-2.5	0	protein.degradation	catalytic/ coenzyme binding  Identical to Protein At5g02240 [Arabidopsis Thaliana] (GB:Q94EG6;GB:Q9LZK8); similar to catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT2G37660.1); similar to Os05g0110300 [Oryza sativa (japonica cultivar-group)] (G
MSGI1_11843	TC9766	63.2	0.4	4.1	0.1	-7.3	0	3.9	0	not assigned.unknown	not assigned.unknown
MSGI1_3466	TC9773	75.2	82.4	225	42.7	0	-2.4	-1.6	0	signalling.calcium	"MSS3 (MULTICOPY SUPPRESSORS OF SNF4 DEFICIENCY IN YEAST 3); calcium ion binding Encodes calmodulin-like MSS3. similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G59440.1); similar to calcium-binding protein [Lotus japonicus] (GB"
MSGI1_7998	TC9774	54.4	110.4	119.8	64	1	0	-1.1	0	"RNA.regulation of transcription.HSF,Heat-shock transcription factor family"	"HSF4 (HEAT SHOCK FACTOR 4); DNA binding / transcription factor encodes a protein whose sequence is similar to heat shock factors that regulate the expression of heat shock proteins. Transcript level is increased in response to heat shock. However, overex"
MSGI1_7998	TC9774	54.4	110.4	119.8	64	1	0	-1.1	0	stress.abiotic.heat	"HSF4 (HEAT SHOCK FACTOR 4); DNA binding / transcription factor encodes a protein whose sequence is similar to heat shock factors that regulate the expression of heat shock proteins. Transcript level is increased in response to heat shock. However, overex"
MSGI1_11951	TC9777	86.3	16.8	17	15.9	-2.4	0	2.3	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_11951	TC9777	86.3	16.8	17	15.9	-2.4	0	2.3	0	cell wall	GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G26430.1); similar to Os07g0586200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060129.1); similar to hypothetical pro
MSGI1_11951	TC9777	86.3	16.8	17	15.9	-2.4	0	2.3	0	misc.GDSL-motif lipase	GDSL-motif lipase/hydrolase family protein  similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G26430.1); similar to Os07g0586200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060129.1); similar to hypothetical pro
MSGI1_39908	TC9787	31.6	12.5	2.9	6.9	0	0	3.4	0	DNA.synthesis/chromatin structure.histone	histone H3  Identical to Histone H3.3 (HTR8) [Arabidopsis Thaliana] (GB:P59169;GB:Q6NR95); similar to histone H3.2 [Arabidopsis thaliana] (TAIR:AT4G40030.3); similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G40040.2); similar to disease-resistent-re
MSGI1_23144	TC9792	50.8	452.4	238.9	463.7	3.2	1	-2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_7051	TC9793	55.3	35.4	14.5	36	0	0	1.9	0	not assigned.unknown	not assigned.unknown
MSGI1_5799	TC98	767.2	410.4	343.8	365.2	0	0	1.2	0	PS.lightreaction.photosystem II.LHC-II	"LHCB3 (LIGHT-HARVESTING CHLOROPHYLL BINDING PROTEIN 3) Lhcb3 protein is a component of the main light harvesting chlorophyll a/b-protein complex of Photosystem II (LHC II). similar to LHCB2.1 (Photosystem II light harvesting complex gene 2.1), chlorophyl"
MSGI1_1502	TC9806	107.3	61.5	30.5	32.8	0	0	1.8	0	RNA.regulation of transcription.GRAS transcription factor family	GAI (GA INSENSITIVE); transcription factor Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell pro
MSGI1_1502	TC9806	107.3	61.5	30.5	32.8	0	0	1.8	0	hormone metabolism.gibberelin.induced-regulated-responsive-activated	GAI (GA INSENSITIVE); transcription factor Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell pro
MSGI1_3968	TC9807	17.7	26.2	56.6	39.7	0	0	-1.7	0	nodulin_nodulin-like	nodulin_nodulin-like
MSGI1_3968	TC9807	17.7	26.2	56.6	39.7	0	0	-1.7	0	development.unspecified	"nodulin MtN21 family protein  similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT2G40900.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE78418.1); contains InterPro domain Protein of unknown"
MSGI1_23905	TC981	59.5	28.9	99.4	64.2	0	0	0	-1.2	not assigned.unknown	not assigned.unknown
MSGI1_12385	TC9812	157.7	34.8	26.5	32.9	-2.2	0	2.6	0	cell wall.cell wall proteins.AGPs	"FLA2 (FLA2) AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds Identical to Fasciclin-like arabinogalactan protein 2 precursor (FLA2) [Arabidopsis Thaliana] (GB:Q9SU13;GB:Q8L9T2;GB:Q9C5Q6); similar to FLA1 (F"
MSGI1_5074	TC9816	28.4	76.9	68	71.3	1.4	0	-1.3	0	not assigned.unknown	not assigned.unknown
MSGI1_116780	TC982	55.3	24.1	0	0	-1.2	0	6.8	5.6	not assigned.unknown	not assigned.unknown
MSGI1_9515	TC9821	109.9	61.8	48.2	16	0	-1.6	1.2	1.9	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY70 (WRKY DNA-binding protein 70); transcription factor member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of  JA-signaling is partly
MSGI1_6366	TC9822	25.6	24.7	12.1	33.8	0	1.5	0	0	OPP.oxidative PP.6-phosphogluconate dehydrogenase	6-phosphogluconate dehydrogenase NAD-binding domain-containing protein  similar to 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G71180.1); similar to 3-hydroxyisobutyrate dehydrogenase [Blastopire
MSGI1_3854	TC9825	50.5	19	25.7	25.4	-1.4	0	0	0	tetrapyrrole synthesis.uroporphyrinogen decarboxylase	"HEME2; uroporphyrinogen decarboxylase  Identical to Uroporphyrinogen decarboxylase, chloroplast precursor (EC 4.1.1.37) (URO-D) (UPD) [Arabidopsis Thaliana] (GB:O22886); similar to HEME1, uroporphyrinogen decarboxylase [Arabidopsis thaliana] (TAIR:AT3G14"
MSGI1_7227	TC9831	12.9	32.7	6.5	10	0	0	0	1.7	stress.abiotic.heat	ERD2/HSP70T-1 (EARLY-RESPONSIVE TO DEHYDRATION 2); ATP binding encodes a heat shock protein whose gene expression is induced by heat and dehydration. similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G0944
MSGI1_11343	TC9832	93	175	99.8	80	0	0	0	1.1	not assigned.unknown	not assigned.unknown
MSGI1_14162	TC9840	79.6	92.4	174.3	227.9	0	0	-1.1	-1.3	not assigned.unknown	not assigned.unknown
MSGI1_20742	TC9849	107.5	46.4	95.7	96.3	-1.2	0	0	-1.1	protein.synthesis.mito/plastid ribosomal protein.plastid	GHS1 (GLUCOSE HYPERSENSITIVE 1); structural constituent of ribosome GHS1 encodes plastid ribosomal protein S21 similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT5G63300.1); similar to ribosome-like protein [Cucumis sativus] (GB:
MSGI1_11259	TC9859	13.5	70.9	63.7	9.4	2.4	-2.8	-2.2	2.9	stress.biotic	immediate-early fungal elicitor family protein  similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G37490.1); similar to immediate-early fungal elicitor protein CMPG1 [Petroselinum crispum] (GB:AAK69401.1); contains InterPro domain
MSGI1_30847	TC986	32.7	46.8	26.4	59.6	0	1.2	0	0	not assigned.unknown	not assigned.unknown
MSGI1_65341	TC9863	1.5	2.4	7.3	22.3	0	0	0	-3.2	secondary metabolism.N misc.cyanogenic glycosides	CYN (CYANASE); cyanate hydratase cyanase Identical to Cyanate hydratase (EC 4.2.1.104) (Cyanase) (Cyanate lyase) (Cyanate hydrolase) (CYN) [Arabidopsis Thaliana] (GB:O22683); similar to Os10g0471300 [Oryza sativa (japonica cultivar-group)] (GB:NP_0010648
MSGI1_4380	TC9865	25.5	9.9	71.1	4.4	0	-4	-1.5	0	cell wall	"peroxidase, putative  Identical to Peroxidase 47 precursor (EC 1.11.1.7) (Atperox P47) (ATP32) (PER47) [Arabidopsis Thaliana] (GB:Q9SZB9); similar to peroxidase [Arabidopsis thaliana] (TAIR:AT5G51890.1); similar to TPA: class III peroxidase 117 precursor"
MSGI1_4380	TC9865	25.5	9.9	71.1	4.4	0	-4	-1.5	0	misc.peroxidases	"peroxidase, putative  Identical to Peroxidase 47 precursor (EC 1.11.1.7) (Atperox P47) (ATP32) (PER47) [Arabidopsis Thaliana] (GB:Q9SZB9); similar to peroxidase [Arabidopsis thaliana] (TAIR:AT5G51890.1); similar to TPA: class III peroxidase 117 precursor"
MSGI1_17603	TC9867	319.6	157.6	141.1	210.5	-1	0	1.2	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S28 (RPS28B)  Identical to 40S ribosomal protein S28-1 (RPS28B) [Arabidopsis Thaliana] (GB:Q9SR73); similar to 40S ribosomal protein S28 (RPS28A) [Arabidopsis thaliana] (TAIR:AT3G10090.1); similar to ribosomal protein S28 [Prunus per
MSGI1_11498	TC9870	13.9	26.4	320.5	18	0	-4.2	-4.5	0	"metal handling.binding, chelation and storage"	"ATFER1 (ferretin 1); ferric iron binding Encodes  a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Identical to Ferritin-1, chloroplast"
MSGI1_11283	TC9873	2.3	5.2	20	10.1	0	0	-3.1	0	not assigned.unknown	not assigned.unknown
MSGI1_17602	TC9874	184.5	96.8	51.8	95	0	0	1.8	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S19 (RPS19A)  Identical to 40S ribosomal protein S19-1 (RPS19A) [Arabidopsis Thaliana] (GB:Q9SGA6); similar to 40S ribosomal protein S19 (RPS19B) [Arabidopsis thaliana] (TAIR:AT5G15520.1); similar to Ribosomal protein S19e [Medicago
MSGI1_8264	TC9877	5.8	27.9	24.2	20.8	2.3	0	-2.1	0	RNA.regulation of transcription.GRAS transcription factor family	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_8264	TC9877	5.8	27.9	24.2	20.8	2.3	0	-2.1	0	development.unspecified	"SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [So"
MSGI1_23414	TC9878	12.5	14.5	32.3	6.3	0	-2.4	0	0	not assigned.unknown	not assigned.unknown
MSGI1_7676	TC9879	21.5	65.9	3.6	5.9	1.6	0	2.6	3.5	"misc.oxidases - copper, flavone etc."	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_7676	TC9879	21.5	65.9	3.6	5.9	1.6	0	2.6	3.5	cell wall	"SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase  similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] ("
MSGI1_18213	TC988	12.8	61.5	57.2	55.4	2.3	0	-2.2	0	cell wall.cell wall proteins.LRR	leucine-rich repeat family protein  similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT2G15880.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT
MSGI1_37523	TC9881	25.8	43.8	91.3	62.8	0	0	-1.8	0	not assigned.unknown	not assigned.unknown
MSGI1_9347	TC9883	181.5	89.4	128.3	74	-1	0	0	0	nucleotide metabolism.phosphotransfer and pyrophosphatases.uridylate kinase	"uridylate kinase / uridine monophosphate kinase / UMP kinase (PYR6)  Identical to Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate kinase) (UMP kinase) (UMP/CMP kinase) (PYR6) [Arabidopsis Thaliana] (GB:O04905); similar to uridylate kinase, puta"
MSGI1_13300	TC9885	42.7	326.7	15.4	21.2	2.9	0	1.5	3.9	"misc.oxidases - copper, flavone etc."	"oxidoreductase, zinc-binding dehydrogenase family protein  Identical to Quinone oxidoreductase-like protein At1g23740, chloroplast precursor (EC 1.-.-.-) [Arabidopsis Thaliana] (GB:Q9ZUC1;GB:Q945P3); similar to oxidoreductase, zinc-binding dehydrogenase"
MSGI1_6162	TC989	15.6	59.8	34.5	47.1	1.9	0	0	0	cell wall.cell wall proteins.LRR	leucine-rich repeat family protein  similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT2G15880.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT
MSGI1_3986	TC9899	10.4	13.5	39.8	10.8	0	-1.9	-1.9	0	protein.postranslational modification	protein phosphatase 2C family protein / PP2C family protein  similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT4G03415.1); similar to Protein phosphatase 2C-like [Medicago truncatula] (GB:ABE77622.1); co
MSGI1_6249	TC99	57.9	7	21.8	23.7	-3	0	1.4	0	PS.lightreaction.photosystem II.PSII polypeptide subunits	"CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding Subunit of light-harvesting complex II (LHCII),which absorbs light and transfers energy to the photosynthetic reaction center. Identical to Chlorophyll a-b binding protein 2, chloroplast precu"
MSGI1_10418	TC9900	90.9	87.3	49	96.3	0	1	0	0	redox.thioredoxin	"ATF2/TRXF2 (THIOREDOXIN F2); thiol-disulfide exchange intermediate  Identical to Thioredoxin F-type 2, chloroplast precursor (TRX-F2) [Arabidopsis Thaliana] (GB:Q9XFH9); similar to ATF1/TRXF1 (THIOREDOXIN F-TYPE 1), thiol-disulfide exchange intermediate"
MSGI1_13563	TC9905	30.9	18.9	6.6	21	0	0	2.2	0	not assigned.unknown	not assigned.unknown
MSGI1_12718	TC9908	56	22.5	26.1	29.3	-1.3	0	1.1	0	protein.folding	"chloroplast chaperonin 10, putative  similar to CHL-CPN10 (chloroplast chaperonin 10) [Arabidopsis thaliana] (TAIR:AT2G44650.1); similar to chloroplast chaperonin 10 [Brassica rapa] (GB:ABK78693.1); contains InterPro domain Chaperonin Cpn10; (InterPro:IP"
MSGI1_11623	TC9914	6.6	18.8	1.1	1.2	0	0	0	4	signalling.receptor kinases.Catharanthus roseus-like RLK1	protein kinase family protein  similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39000.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G28680.1); similar to protein kinase family protein [Arabidopsis t
MSGI1_7105	TC9919	11.8	21.1	6	25.3	0	2.1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_19332	TC9922	254.3	144.6	69.6	133.1	0	0	1.9	0	protein.synthesis.misc ribososomal protein	"60s acidic ribosomal protein P1, putative  similar to 60S acidic ribosomal protein P1 (RPP1B) [Arabidopsis thaliana] (TAIR:AT4G00810.2); similar to ribosomal protein P1 [Triticum aestivum] (GB:AAW50990.1); contains InterPro domain Ribosomal protein 60S;"
MSGI1_4029	TC9925	25.2	47.2	19	15.9	0	0	0	1.6	RNA.regulation of transcription.PHOR1	U-box domain-containing protein  similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G19380.1); similar to putative immediate-early fungal elicitor protein CMPG1 [Oryza sativa (japonica cultivar-group)] (GB:BAD16187.1); contains Int
MSGI1_13298	TC9928	8.8	9.2	26.9	29	0	0	0	-1.7	not assigned.unknown	not assigned.unknown
MSGI1_6645	TC993	127.1	69	62.9	96.7	0	0	1	0	protein.synthesis.misc ribososomal protein	"EMB3010 (EMBRYO DEFECTIVE 3010); structural constituent of ribosome  Identical to 40S ribosomal protein S6-2 (RPS6B) [Arabidopsis Thaliana] (GB:P51430;GB:O04670;GB:Q9LX91); similar to RPS6 (RIBOSOMAL PROTEIN S6), structural constituent of ribosome [Arabi"
MSGI1_25202	TC9933	67.2	147.6	126.7	57.9	1.1	-1.1	0	1.4	RNA.regulation of transcription.unclassified	zinc finger (AN1-like) family protein  Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 5 (AtSAP5) (SAP5) [Arabidopsis Thaliana] (GB:Q9LHJ8); similar to DNA binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G51200
MSGI1_4864	TC994	59.4	32.2	18	27.5	0	0	1.7	0	protein.synthesis.misc ribososomal protein	"EMB3010 (EMBRYO DEFECTIVE 3010); structural constituent of ribosome  Identical to 40S ribosomal protein S6-2 (RPS6B) [Arabidopsis Thaliana] (GB:P51430;GB:O04670;GB:Q9LX91); similar to RPS6 (RIBOSOMAL PROTEIN S6), structural constituent of ribosome [Arabi"
MSGI1_20976	TC9943	125.5	64.2	40.2	70.7	0	0	1.6	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L26 (RPL26B)  Identical to 60S ribosomal protein L26-2 (RPL26B) [Arabidopsis Thaliana] (GB:Q9FJX2); similar to 60S ribosomal protein L26 (RPL26A) [Arabidopsis thaliana] (TAIR:AT3G49910.1); similar to Ribosomal protein L24/L26 [Medic
MSGI1_23071	TC9944	56.5	21.1	37.8	42	-1.4	0	0	0	development.unspecified	bundle-sheath defective protein 2 family / bsd2 family  similar to putative chaperon P13.9 [Castanea sativa] (GB:AAK25754.1); contains domain Cysteine-rich domain of the chaperone protein DnaJ. (SSF57938); contains domain no description (G3D.2.10.230.10)
MSGI1_3127	TC9949	5.4	24.6	32.4	4.1	2.2	-3	-2.6	2.6	RNA.regulation of transcription.WRKY domain transcription factor family	WRKY53 (WRKY DNA-binding protein 53); transcription factor member of WRKY Transcription Factor; Group III Identical to Probable WRKY transcription factor 53 (WRKY DNA-binding protein 53) (WRKY53) [Arabidopsis Thaliana] (GB:Q9SUP6); similar to WRKY41 (WRK
MSGI1_40757	TC995	29.5	15.4	3	2.4	0	0	3.3	0	not assigned.unknown	not assigned.unknown
MSGI1_3357	TC9952	5.4	7.1	30.5	4.6	0	-2.7	-2.5	0	amino acid metabolism.degradation.branched-chain group.shared	DIN3/LTA1 (DARK INDUCIBLE 3); alpha-ketoacid dehydrogenase dihydrolipoamide branched chain acyltransferase similar to dihydrolipoyllysine-residue acetyltransferase [Arabidopsis thaliana] (TAIR:AT1G54220.2); similar to dihydrolipoyl transacylase [Dictyost
MSGI1_25806	TC9958	75.9	34	19	25.1	-1.2	0	2	0	protein.synthesis.misc ribososomal protein	"STV1 (SHORT VALVE1); structural constituent of ribosome RPL24B encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B. Mutants showed defects in"
MSGI1_64973	TC9959	131.8	58.8	51.3	69.5	-1.2	0	1.4	0	not assigned.unknown	not assigned.unknown
MSGI1_27988	TC9961	226.2	265.1	213.7	435.7	0	1	0	0	not assigned.unknown	not assigned.unknown
MSGI1_28972	TC9962	1073.5	1064.4	360.1	1805.7	0	2.3	1.6	0	not assigned.unknown	not assigned.unknown
MSGI1_16188	TC9966	112.1	54.8	20.1	47.3	-1	1.2	2.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L12 (RPL12C)  Identical to 60S ribosomal protein L12-3 (RPL12C) [Arabidopsis Thaliana] (GB:Q9FF52); similar to 60S ribosomal protein L12 (RPL12B) [Arabidopsis thaliana] (TAIR:AT3G53430.1); similar to 60S ribosomal protein L12 [Capsic
MSGI1_1947	TC998	116.2	48.4	51.4	46.5	-1.3	0	1.2	0	cell wall.cell wall proteins.LRR	leucine-rich repeat family protein / extensin family protein  similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G18670.1); similar to leucine-rich repeat family protein / extensin family protein [Arab
MSGI1_7254	TC9981	40.7	35.2	30.9	64.1	0	1.1	0	0	glycolysis.PK	"pyruvate kinase, putative  similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT5G63680.1); similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT4G26390.1); similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:A"
MSGI1_2007	TC9986	19.2	68.6	108	85.2	1.8	0	-2.5	0	protein.degradation.ubiquitin.E3.SCF.FBOX	"F-box family protein AtSKP2;1 is a homolog of human SKP2, the human F-box protein that recruits E2F1.  Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain.  Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-bo"
MSGI1_19276	TC9989	130.8	53.6	35.4	62.9	-1.3	0	1.9	0	protein.synthesis.misc ribososomal protein	40S ribosomal protein S12 (RPS12C)  Identical to 40S ribosomal protein S12-2 (RPS12C) [Arabidopsis Thaliana] (GB:Q9SKZ3); similar to 40S ribosomal protein S12 (RPS12A) [Arabidopsis thaliana] (TAIR:AT1G15930.1); similar to Ribosomal protein L7Ae/L30e/S12e/
MSGI1_18947	TC9995	161.7	70.2	64.4	77.1	-1.2	0	1.3	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L35 (RPL35D)  Identical to 60S ribosomal protein L35-4 (RPL35D) [Arabidopsis Thaliana] (GB:Q9LZ41); similar to 60S ribosomal protein L35 (RPL35B) [Arabidopsis thaliana] (TAIR:AT2G39390.1); similar to 60S ribosomal protein L35 (RPL35A
MSGI1_56774	TC9996	57.2	22	20.8	19.3	-1.4	0	1.5	0	protein.synthesis.misc ribososomal protein	60S ribosomal protein L35 (RPL35D)  Identical to 60S ribosomal protein L35-4 (RPL35D) [Arabidopsis Thaliana] (GB:Q9LZ41); similar to 60S ribosomal protein L35 (RPL35B) [Arabidopsis thaliana] (TAIR:AT2G39390.1); similar to 60S ribosomal protein L35 (RPL35A
MSGI1_6516	TC9997	50.9	35.5	23	49.9	0	1.1	1.1	0	protein.synthesis.initiation	"EIF3G1 (eukaryotic translation initiation factor 3G1); RNA binding / translation initiation factor One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3). similar to EIF3G2 (eukaryotic translation initiation factor 3G2),"