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HBAHHAAHHBAHHHAAHAAHBAAHHBHAHHHAAABH }sdp {ref "Rosen and Williams 2000, Genotypes by Jing Gu and Shuhua Qi" }ref }lox {lox D19Mit119 200103012141 200009081647 5 {ali CCR27.5 }ali {lty 0000000000000001 0000000000000000 }lty {sdp HHAAHUUHAHHAUHUHHAAABAHBUBHHHHHAHHHH }sdp {ref "Rosen and Williams 2000, Genotypes by Jing Gu and Shuhua Qi" }ref }lox {lox D19Mit10 200103012141 200009081647 5 {ali CCR47 }ali {lty 0000000000000001 0000000000000000 }lty {sdp UHAAHHHHAHHAHHUHBAAABAHBUBHHHHHHHHHH }sdp {ref "Rosen and Williams 2000, Genotypes by Jing Gu and Shuhua Qi" }ref }lox {lox D19Mit123 200103012141 200009081647 5 {ali CCR51 }ali {lty 0000000000000001 0000000000000000 }lty {sdp HAAAHHAHAHHHHHAHBAAABABBHBHHHHHHHBAA }sdp {ref "Rosen and Williams 2000, Genotypes by Jing Gu and Shuhua Qi" }ref }lox {lox D19Mit37 200103012141 200009081646 5 {ali CCR51 }ali {lty 1000000000000000 0000000000000000 }lty {sdp HAAAHHUHAHHHHHUHBAAABABBUBHHHHHHHBAA }sdp {ref "Rosen and Williams 2000, Genotypes by Jing 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Rerun and rereade Sept 21, 2000 by Shuhua and Rob. }ref {cmt B GENOTYPE IS DOMINANT. NO H in this run. B's converted to Hs as a guess. }cmt }lox }chx {chx X 200103012141 200103012141 0 {cty 0010000000000000 0000000000000000 }cty {cld 0111111111111111 0000000000000000 }cld {lox DXMit68 200103012141 200007141013 5 {ali M20.8 }ali {lty 0000000000000001 0000000000000000 }lty {sdp AAHBBHUAHHHBBAUHHAAAAUBUUAAAHAAAAHHB }sdp {ref "Rosen and Williams 2000, Genotypes by Jing Gu and Shuhua Qi" }ref }lox {lox DXMit197 200103012141 200003111310 5 {ali 50.3 }ali {lty 0000000000000001 0000000000000000 }lty {sdp HAHABHHHAAHABBAHAHAAAABAAAHAABAAAHHA }sdp {ref "A/JxBXD5F2, Williams and Strom. Caudate data by Glenn D. Rosen. Cases in Mouse Brain Library." }ref {cmt "Rosen GD, Williams RW" }cmt }lox }chx {chx Control 200103012141 200103012141 0 {cty 0010000000000000 0000000000000000 }cty {cld 0111111111111111 0000000000000000 }cld {lox D19Mit123 200103012141 200007141013 5 {ali M38.3 }ali {lty 0000000000000001 0000000000000000 }lty {sdp HAAAHHAHAHHHHHAHBAAABABBHBHHHHHHHBAA }sdp {ref "Rosen and Williams 2000, Genotypes by Jing Gu and Shuhua Qi" }ref }lox {lox D10Mit186 200103012141 200007201146 5 {ali M36.1 }ali {lty 0000000000000001 0000000000000000 }lty {sdp BAHHHAAAAAAHABABHHHHBAHHBHHHBABBBHBB }sdp {ref "Rosen and Williams 2000, Genotypes by Jing Gu and Shuhua Qi" }ref }lox {lox D19Mit6 200103012141 200009211807 5 {ali CCR55.7 }ali {lty 0000000000000001 0000000000000000 }lty {sdp BBBBBUUAABBBBAUBBBBBUBBAUABAAAAAAUAA }sdp {ref "Rosen and Williams 2000, Genotypes by Jing Gu and Shuhua Qi." Rerun and rereade Sept 21, 2000 by Shuhua and Rob. }ref {cmt B GENOTYPE IS DOMINANT. NO H in this run. This is "AS READ." }cmt }lox {lox D13Mit160 200103012141 200007141013 5 {ali M35 }ali {lty 0000000000000001 0000000000000000 }lty {sdp BABBBBUHABHBABUAHBHAAHHHUHHHHUHHHHBH }sdp {ref "Rosen and Williams 2000, Genotypes by Jing Gu and Shuhua Qi" }ref }lox }chx {chx 10 mod 200103012141 200103012141 0 {cty 0010000000000000 0000000000000000 }cty {cld 0111111111111111 0000000000000000 }cld {lox D10Mit106 200103012141 200007181638 5 {ali M12 }ali {lty 0000000000000001 0000000000000000 }lty {sdp BHHAHAHHBHHHAHABHHHAAHHHHBHHHABHHBHH }sdp {ref "Rosen and Williams 2000, Genotypes by Jing Gu and Shuhua Qi" }ref }lox {lox D10Mit3 200103012141 200007181639 5 {ali M16.4 }ali {lty 0000000000000001 0000000000000000 }lty {sdp BHHAHAUHBHHHABABHHHAAAHHUBHHHAUHHBHB }sdp {ref "Rosen and Williams 2000, Genotypes by Jing Gu and Shuhua Qi" }ref }lox {lox D10Mit186 200103012141 200007181638 5 {ali M36.1 }ali {lty 0000000000000001 0000000000000000 }lty {sdp BAHHHAAAAAAHABABHHHHBAHHBHHHBABBBHBB }sdp {ref "Rosen and Williams 2000, Genotypes by Jing Gu and Shuhua Qi" }ref }lox {lox D10Mit209 200103012141 200007141021 5 {ali M45.9 }ali {lty 0000000000000001 0000000000000000 }lty {sdp BAHHHAAUAAAHABABHHHHBAHHBHHHBABBBHBB }sdp {ref "Rosen and Williams 2000, Genotypes by Jing Gu and Shuhua Qi" }ref }lox {lox D10Mit266 200103012141 200007141021 5 {ali M63.4 }ali {lty 0000000000000001 0000000000000000 }lty {sdp BAHHHAUHAAHHAHUHHBHBBHHHUHHHBABHBHBB }sdp {ref "Rosen and Williams 2000, Genotypes by Jing Gu and Shuhua Qi" }ref }lox {lox D10Mit233 200103012141 200007141021 5 {ali M63.4 }ali {lty 0000000000000001 0000000000000000 }lty {sdp BAHHHAUHAAHHABUHHBHBBHHHUHHHBABHBHBB }sdp {ref "Rosen and Williams 2000, Genotypes by Jing Gu and Shuhua Qi" }ref }lox {lox D10Mit179 200103012141 200007141022 5 {ali M67.8 }ali {lty 0000000000000001 0000000000000000 }lty {sdp BAHHAAUHAAHHAHUHHBHBBHHHUAHHBHBABHBB }sdp {ref "Rosen and Williams 2000, Genotypes by Jing Gu and Shuhua Qi" }ref }lox {lox D10Mit180 200103012141 200007141013 5 {ali M67.8 }ali {lty 0000000000000001 0000000000000000 }lty {sdp BAHHAAUHAAHHAHUHHBHBBHHHUAHHBHBABHBB }sdp {ref "Rosen and Williams 2000, Genotypes by Jing Gu and Shuhua Qi" }ref }lox }chx {trt BrainVol 200007141019 200007141019 {tvl 191.70000 150.70000 157.00000 165.80000 175.89999 138.00000 198.80000 142.89999 192.20000 151.50000 135.30000 179.30000 138.80000 171.70000 155.39999 187.20000 216.30000 165.80000 169.20000 206.30000 191.70000 193.39999 195.39999 171.60001 190.60001 199.70000 207.89999 181.89999 183.39999 174.80000 180.20000 171.00000 172.80000 186.20000 192.10001 184.00000 }tvl {ref Brain volume of cases after processing in celloidin. Values computed by Glenn Ro sen using point counting method (1999, 2000). }ref {qnt 0 0 0 }qnt {mpf 200 150 175 }mpf }trt {trt Brain-CaudVol 200007141019 200007141019 {tvl 160.55000 128.10001 127.94000 136.67999 146.71001 115.66000 167.84000 121.40000 161.07001 126.52000 109.88000 151.03000 116.39000 143.33000 132.89000 156.95000 186.56000 135.72000 141.37000 179.84000 161.36000 161.87000 161.96001 143.07001 163.72000 168.35001 180.73000 153.31000 150.50000 153.35001 151.39999 141.77000 145.39999 153.96001 159.00000 155.80000 }tvl {ref Brain minus caudate volume of cases embedded in celloidin. Calculated by Glenn R osen. Glenn, were these values corrected in any way? }ref {qnt 0 0 0 }qnt {mpf 180 130 150 }mpf }trt {trt CaudVolRaw 200007141019 200007141019 {tvl 31.15000 22.60000 29.06000 29.12000 29.19000 22.34000 30.96000 21.50000 31.13000 24.98000 25.42000 28.27000 22.41000 28.37000 22.51000 30.25000 29.74000 30.08000 27.83000 26.46000 30.34000 31.53000 33.44000 28.53000 26.88000 31.35000 27.17000 28.59000 32.90000 21.45000 28.80000 29.23000 27.40000 32.24000 33.10000 28.30000 }tvl {ref Caudate volume. Original data with (or without) correction for differential shri nkage among cases. Check with Glenn. }ref {qnt 0 0 0 }qnt {mpf 0 0 0 }mpf }trt {trt CaudVolRes 200007141019 200007141019 {tvl 1.83100 -3.80500 2.66900 1.94500 1.11400 -2.94800 0.98600 -4.30300 1.76400 -1.28300 0.65100 -0.19400 -2.94300 0.59700 -4.32500 1.25400 -1.91500 2.99100 0.23300 -4.59100 0.94800 2.09200 3.99400 0.78100 -2.72400 1.33000 -3.96100 -0.07900 4.48300 -7.22300 0.30300 1.59700 -0.55900 3.51300 3.92000 -0.50000 }tvl {ref Caudate volume residuals after factoring out brain minus caudate. Computed by G lenn Rosen, March 2000. }ref {qnt 0 0 0 }qnt {mpf 0 0 0 }mpf }trt {trt CaudNumber 200007141019 200007141019 {tvl 4129776.00000 2893842.00000 3251901.00000 3297036.00000 4072329.00000 3380685.00000 3952447.00000 3107542.00000 4279207.00000 3469641.00000 3403359.00000 3830040.00000 3145586.00000 3776615.00000 3077593.00000 3701228.00000 4747121.00000 2854050.00000 3791276.00000 4236239.00000 4296305.00000 3746283.00000 5000000.00000 3789153.00000 3403270.00000 4882409.00000 4317957.00000 4049615.00000 3580888.00000 3459142.00000 3730537.00000 3845205.00000 3699557.00000 4403296.00000 4353053.00000 3480529.00000 }tvl {ref Absolute number of neurons in the caudate. Used 3D counting/disector method. Dat a by Glenn D. Rosen. 1999Ð2000. }ref {cmt Case 27 is CelloidinID #181, case 103196P. Original value of 5,571,529 is very h igh. Ask Glenn to check volume estimate of 33.4. Parental and F1 values are made up by RW. Get real data. }cmt {qnt 0 0 0 }qnt {mpf 19264 -14656 2304 }mpf }trt {trt CaudNumbRes 200008091203 200008091203 {tvl 122099.00000 -512495.00000 -151471.00000 -268299.00000 321125.00000 204877.00000 -190323.00000 -174636.00000 261894.00000 92583.00000 334662.00000 -1219.00000 -43750.00000 88047.00000 -417509.00000 -239736.00000 257446.00000 -693495.00000 139029.00000 -128906.00000 273618.00000 -285855.00000 800000.00000 105403.00000 -663151.00000 730188.00000 -63681.00000 176105.00000 -240549.00000 -415110.00000 -107579.00000 185546.00000 -27371.00000 517740.00000 374100.00000 -43930.00000 }tvl {ref Caudate neuron number residuals. These vaues correct for differences in brain mi nus caudate volume. Computed by Glenn Rosen, Mar 2000. }ref {cmt Case 27 equals CelloidinID 181, 103196P. 1,537,723 is the "original" residual. Parental and F1 values are made up values. }cmt {qnt 0 0 0 }qnt {mpf 13568 24288 0 }mpf }trt {trt CaudCPD 200007141019 200007141019 {tvl 243821.00000 231081.00000 248816.00000 234396.00000 261396.00000 287240.00000 212134.00000 243214.00000 229523.00000 250604.00000 281169.00000 248886.00000 266403.00000 267501.00000 230288.00000 228373.00000 220170.00000 193579.00000 220983.00000 200553.00000 223799.00000 188879.00000 240720.00000 211716.00000 208446.00000 211237.00000 214502.00000 222270.00000 192451.00000 250547.00000 231004.00000 219421.00000 233560.00000 225657.00000 214432.00000 20718.00000 }tvl {ref Neuronal cell packing density in the caudate. Data by Glenn D. Rosen, 1999. Thes e values may not be corrected for shrinkage. }ref {qnt 0 0 0 }qnt {mpf 0 0 0 }mpf }trt {trt CaudCellArea 200007141019 200007141019 {tvl 55.03700 59.66300 54.80400 57.71200 53.95900 45.99000 55.82700 54.26700 54.33100 50.87900 54.49500 53.17900 53.69500 53.28100 54.05700 53.57600 44.56100 51.36300 56.86500 48.02000 53.50700 56.50000 62.17200 61.73100 63.78400 56.20300 57.15500 55.31600 57.29400 54.59500 53.51700 54.71600 57.31300 49.32900 52.53100 59.45000 }tvl {ref Area of caudate cells. Units are probably square microns without shrinkage corre ction. Check with Glenn. }ref {qnt 0 0 0 }qnt {mpf 0 0 0 }mpf }trt {trt AbsAsymCoef 200007141019 200007141019 {tvl 0.03000 0.11400 0.07600 0.06700 0.08600 0.07400 0.08700 0.07400 0.01300 0.03100 0.00400 0.04000 0.06900 0.00000 0.03800 0.04100 0.01300 0.02700 0.02600 0.00800 0.00000 0.00000 0.07200 0.02600 0.02700 0.00100 0.02400 0.04600 0.03300 0.01700 0.01300 0.00100 0.07100 0.03500 0.05700 0.06000 }tvl {ref Absolute asymmetry coefficient computed by Glenn D. Rosen. Add more details here Glenn. }ref {qnt 0 0 0 }qnt {mpf 0 0 0 }mpf }trt {trt CaudateAsym 200007141019 200007141019 {tvl 0.03000 -0.11400 -0.07600 -0.06700 0.08600 0.07400 -0.08700 -0.07400 0.01300 -0.03100 -0.00400 -0.04000 -0.06900 0.00000 0.03800 0.04100 0.01300 -0.02700 -0.02600 0.00800 0.00000 0.00000 -0.07200 -0.02600 -0.02700 0.00100 -0.02400 0.04600 0.03300 0.01700 -0.01300 -0.00100 0.07100 0.03500 -0.05700 0.06000 }tvl {ref Caudate asymmetry coefficient computed by Glenn D. Rosen, March 2000. }ref {qnt 0 0 0 }qnt {mpf 0 0 0 }mpf }trt {trt Celloidin ID 200007141019 200007141019 {tvl 34.00000 35.00000 36.00000 37.00000 38.00000 39.00000 40.00000 41.00000 43.00000 44.00000 45.00000 46.00000 47.00000 48.00000 49.00000 50.00000 51.00000 77.00000 175.00000 176.00000 177.00000 178.00000 181.00000 182.00000 183.00000 184.00000 185.00000 187.00000 188.00000 189.00000 191.00000 193.00000 194.00000 195.00000 197.00000 198.00000 }tvl {ref These are the Celloidin ID numbers of the cases used to study caudate in this AB XD5F2 cross. }ref {qnt 0 0 0 }qnt {mpf 0 0 0 }mpf }trt {trt Volume6/29 200010191323 200010191323 {tvl 31.15000 22.60000 29.06000 29.12000 29.19000 22.34000 30.96000 21.50000 31.13000 24.98000 25.42000 28.27000 22.41000 28.37000 22.51000 30.25000 29.74000 30.08000 27.83000 26.46000 29.38000 31.53000 31.18000 28.53000 31.18000 27.33000 30.11000 28.59000 32.90000 23.25000 28.80000 29.23000 27.40000 32.24000 33.10000 28.30000 }tvl {qnt 9.2 13.8 18.4 }qnt {mpf 30 30 30 }mpf }trt {trt Density6/29 200007141019 200007141019 {tvl 66391.00000 63947.00000 55881.00000 56680.00000 69623.00000 75931.00000 63805.00000 72303.00000 68732.00000 69409.00000 66947.00000 67865.00000 70324.00000 66570.00000 68350.00000 61294.00000 79819.00000 47441.00000 68194.00000 80012.00000 70793.00000 59407.00000 80219.00000 66417.00000 63245.00000 77875.00000 79448.00000 70756.00000 54416.00000 80656.00000 64786.00000 65770.00000 67515.00000 68261.00000 65861.00000 6147.00000 }tvl {qnt 0 0 0 }qnt {mpf 0 0 0 }mpf }trt {trt Number6/29 200007141019 200007141019 {tvl 2064888.00000 1446921.00000 1625951.00000 1648518.00000 2036164.00000 1690342.00000 1976224.00000 1553771.00000 2139603.00000 1734820.00000 1701679.00000 1915020.00000 1572793.00000 1888308.00000 1538797.00000 1850614.00000 2373561.00000 1427025.00000 1895638.00000 2118120.00000 2079876.00000 1873142.00000 2499673.00000 1894576.00000 1975486.00000 2124326.00000 2392015.00000 2024808.00000 1790444.00000 1873916.00000 1865268.00000 1922602.00000 1849779.00000 2201648.00000 2176527.00000 1740264.00000 }tvl {qnt 0 0 0 }qnt {mpf 0 0 0 }mpf }trt {trt CellArea6/29 200008091135 200008091135 {tvl 55.03700 59.66300 54.80400 57.71200 53.95900 45.99000 55.82700 54.26700 54.33100 50.87900 54.49500 53.17900 53.69500 53.28100 54.05700 53.57600 44.56100 51.36300 56.86500 48.02000 53.50700 56.50000 62.17200 61.73100 63.78400 56.20300 57.15500 55.31600 57.29400 54.59500 53.51700 54.71600 57.31300 49.32900 52.53100 59.45000 }tvl {cmt Cross sectional area in microns. Check whether this is corrected for shrinkage. }cmt {qnt 0 0 0 }qnt {mpf 0 0 0 }mpf }trt {trt ResNumber6/29 200008091202 200008091202 {tvl -21749.14844 -303867.12500 -355639.53125 -339375.34375 56374.26172 10685.43164 -68094.37500 -80565.46094 144206.32812 -14467.46387 -29900.60742 -74073.86719 -114066.76562 -126297.18750 -194283.26562 -215313.95312 369760.59375 -544060.87500 99529.75781 253881.53125 134301.43750 -84137.75000 609022.81250 95766.56250 5600.65479 245381.00000 467449.75000 158768.73438 -183042.93750 55597.90625 -102516.41406 92278.57812 -32167.32617 267178.37500 211743.92188 -207411.48438 }tvl {cmt Residual number of neurons in the striatum. Correction for brain weight. Counts by Glenn Rosen. }cmt {qnt 9.2 13.8 18.2 }qnt {mpf 0 0 0 }mpf }trt {trt ResVolume6/29 200007141019 200007141019 {tvl -1.27500 -2.65900 -1.12400 -1.19800 -0.95600 -1.40100 -0.56200 -1.27400 0.65100 -0.24700 0.57100 -2.07400 -1.48500 -2.51800 -2.37100 -1.73400 -0.91800 0.12000 1.60400 -1.22000 -0.03500 1.86500 2.93700 2.24600 1.24600 -0.66400 1.14300 0.87200 2.88900 -3.45000 -1.08900 2.27400 -0.65800 3.06100 3.27500 -1.07000 }tvl {qnt 0 0 0 }qnt {mpf 0 0 0 }mpf }trt {trt Brain-Caud7/18 200007181630 200007181630 {tvl 518.00000 406.00000 483.00000 479.00000 483.00000 383.00000 504.00000 368.00000 488.00000 406.00000 419.00000 486.00000 385.00000 494.00000 402.00000 511.00000 491.00000 480.00000 380.00000 438.00000 464.00000 469.00000 445.00000 416.00000 478.00000 439.00000 461.00000 439.00000 475.00000 425.00000 473.00000 427.00000 444.00000 462.00000 472.00000 466.00000 }tvl {ref Rosen and Williams }ref {cmt This is the raw brain weight minus the corrected striatum volume. Best estimate of non-striatal brain size. }cmt {qnt 0 0 0 }qnt {mpf 0 0 0 }mpf }trt {trt Brain raw 200007141249 200007141249 {tvl 549.40002 428.89999 512.29999 508.60001 511.79999 404.89999 535.09998 389.00000 518.90002 430.79999 444.60001 514.00000 407.39999 522.59998 424.50000 541.59998 520.29999 509.79999 407.39999 464.79999 494.79999 500.79999 478.29999 445.00000 504.70001 470.50000 488.50000 467.50000 507.60001 446.20001 501.60001 456.20001 471.60001 493.89999 504.89999 494.00000 }tvl {ref Rosen }ref {cmt Uncorrected brain weight. }cmt {qnt 0 0 0 }qnt {mpf 400 480 460 }mpf }trt {trt CellVol 200008091158 200008091158 {tvl 55.20000 62.30000 54.80000 59.20000 53.50000 42.10000 56.40000 54.00000 54.10000 49.00000 54.30000 52.40000 53.20000 52.50000 53.70000 53.00000 40.20000 49.70000 57.90000 45.00000 52.90000 57.40000 66.20000 65.50000 68.80000 56.90000 58.40000 55.60000 58.60000 54.50000 52.90000 54.70000 58.60000 46.80000 51.40000 61.90000 }tvl {cmt Caudate nuclear or cell volume computed from area assuming a spherical nucleus }cmt {qnt 0 0 0 }qnt {mpf 0 0 0 }mpf }trt }mmx