Branca et al. Dataset_S3. IMGAG gene models for low diversity (qw) or Tajima's D 100 kb windows that are contiguous with other low diversity (or Tajima's D) windows or are in the lowest 1% of values for both diversity and Tajima's D. See Table S2 for details. "Gene model support: E = expressed sequence, F = full length cDNA, H = hypothetical, I = ab initio, L = low-confidence calls" gene model ID chromosome window gene start gene end gene model support description Medtr1g005240.1 chr1 1 86807 87930 E Cytochrome c oxidase subunit III H+-transporting two-sector ATPase A subunit Medtr1g005000.1 chr1 1 50052 52303 H hypothetical protein Medtr1g005010.1 chr1 1 54904 55140 L hypothetical protein Medtr1g005020.1 chr1 1 57771 62298 E hypothetical protein Medtr1g005060.1 chr1 1 65321 68162 E hypothetical protein Medtr1g005070.1 chr1 1 68164 68720 F hypothetical protein Medtr1g005080.1 chr1 1 68722 69356 E hypothetical protein Medtr1g005100.1 chr1 1 71225 71476 F hypothetical protein Medtr1g005110.1 chr1 1 71488 71953 L hypothetical protein Medtr1g005120.1 chr1 1 72085 72923 F hypothetical protein Medtr1g005130.1 chr1 1 72925 73645 H hypothetical protein Medtr1g005150.1 chr1 1 75135 75373 E hypothetical protein Medtr1g005170.1 chr1 1 76228 76920 E hypothetical protein Medtr1g005180.1 chr1 1 81883 83525 E hypothetical protein Medtr1g005190.1 chr1 1 83589 83765 L hypothetical protein Medtr1g005200.1 chr1 1 83879 84148 H hypothetical protein Medtr1g005210.1 chr1 1 84273 84689 H hypothetical protein Medtr1g005220.1 chr1 1 85456 85662 L hypothetical protein Medtr1g005230.1 chr1 1 85815 86067 E hypothetical protein Medtr1g005250.1 chr1 1 87963 89117 E hypothetical protein Medtr1g005260.1 chr1 1 89779 90163 I hypothetical protein Medtr1g005270.1 chr1 1 92060 93611 E hypothetical protein Medtr1g005290.1 chr1 1 95779 96031 L hypothetical protein Medtr1g005300.1 chr1 1 96182 98268 E hypothetical protein Medtr1g005090.1 chr1 1 69639 71223 E NADH/Ubiquinone/plastoquinone (complex I) Medtr1g005140.1 chr1 1 73647 75129 E NADH/Ubiquinone/plastoquinone (complex I) Medtr1g005160.1 chr1 1 75375 76220 E NADH-ubiquinone oxidoreductase chain 4 putative Medtr1g005050.1 chr1 1 64919 65319 H NADH-ubiquinone/plastoquinone oxidoreductase chain 3 Medtr1g005040.1 chr1 1 64505 64915 E Ribosomal protein S12 bacterial and chloroplast form Medtr1g005030.1 chr1 1 62727 63842 E RNA-binding S4 Medtr1g005280.1 chr1 1 93613 94129 E Translation protein SH3-like Medtr1g005310.1 chr1 1 98270 99627 E hypothetical protein Medtr1g005320.1 chr1 1 99717 100364 E hypothetical protein Medtr1g005330.1 chr1 2 100717 101279 I hypothetical protein Medtr1g005340.1 chr1 2 101967 103057 E hypothetical protein Medtr1g005350.1 chr1 2 103139 104568 E Cytochrome c biogenesis ccmF-like mitochondrial protein putative Medtr1g005360.1 chr1 2 104580 105523 E Cytochrome c biogenesis ccmF-like mitochondrial protein putative Medtr1g005370.1 chr1 2 105745 106822 E hypothetical protein Medtr1g005380.1 chr1 2 107020 107429 E Respiratory-chain NADH dehydrogenase subunit 1 Medtr1g005390.1 chr1 2 107812 108360 H hypothetical protein Medtr1g005400.1 chr1 2 113487 116458 E hypothetical protein Medtr1g005410.1 chr1 2 116487 116846 E hypothetical protein Medtr1g005420.1 chr1 2 116985 117928 E Cytochrome c biogenesis ccmF-like mitochondrial protein putative Medtr1g005430.1 chr1 2 118231 119207 E hypothetical protein Medtr1g005440.1 chr1 2 119427 119834 H Respiratory-chain NADH dehydrogenase subunit 1 Medtr1g005450.1 chr1 2 120217 120791 E hypothetical protein Medtr1g005460.1 chr1 2 120793 121029 F hypothetical protein Medtr1g005470.1 chr1 2 121031 121692 E Respiratory-chain NADH dehydrogenase subunit 1 Medtr1g005480.1 chr1 2 121780 122080 H hypothetical protein Medtr1g005490.1 chr1 2 122688 124460 E Cytochrome c oxidase subunit I Medtr1g005500.1 chr1 2 124467 125418 E hypothetical protein Medtr1g005510.1 chr1 2 125495 125814 H Ribosomal protein S10 bacterial form Medtr1g005520.1 chr1 2 125829 126535 E hypothetical protein Medtr1g005530.1 chr1 2 126537 127156 E hypothetical protein Medtr1g005540.1 chr1 2 127177 127382 E hypothetical protein Medtr1g005550.1 chr1 2 128462 128797 I hypothetical protein Medtr1g005560.1 chr1 2 130503 131113 I hypothetical protein Medtr1g005570.1 chr1 2 131209 131594 I hypothetical protein Medtr1g005580.1 chr1 2 131651 133885 E hypothetical protein Medtr1g005590.1 chr1 2 133982 134643 H hypothetical protein Medtr1g005600.1 chr1 2 134955 136449 E hypothetical protein Medtr1g005610.1 chr1 2 136473 137359 E hypothetical protein Medtr1g005620.1 chr1 2 137377 137755 E hypothetical protein Medtr1g005630.1 chr1 2 137780 138128 E hypothetical protein Medtr1g005640.1 chr1 2 138162 138546 H hypothetical protein Medtr1g005650.1 chr1 2 138626 139245 H hypothetical protein Medtr1g005660.1 chr1 2 139597 139877 L hypothetical protein Medtr1g005670.1 chr1 2 140485 140685 L hypothetical protein Medtr1g005680.1 chr1 2 141288 142488 H Sec-independent periplasmic protein translocase Medtr1g005690.1 chr1 2 143906 144082 L hypothetical protein Medtr1g005700.1 chr1 2 146155 147077 E hypothetical protein Medtr1g005710.1 chr1 2 147236 148421 E hypothetical protein Medtr1g005720.1 chr1 2 149188 149840 E Cytochrome c biogenesis ccmF-like mitochondrial protein putative Medtr1g005730.1 chr1 2 149998 152346 E hypothetical protein Medtr1g005740.1 chr1 2 152699 154797 E hypothetical protein Medtr1g005750.1 chr1 2 154799 156849 E hypothetical protein Medtr1g005760.1 chr1 2 157327 157485 L hypothetical protein Medtr1g005770.1 chr1 2 158199 159454 H Translation protein SH3-like Medtr1g005780.1 chr1 2 159456 161006 E hypothetical protein Medtr1g005790.1 chr1 2 162904 163288 I hypothetical protein Medtr1g005800.1 chr1 2 163950 164677 E hypothetical protein Medtr1g005810.1 chr1 2 164679 165084 E hypothetical protein Medtr1g005820.1 chr1 2 165138 165514 E Mitochondrial ribosomal protein S3 putative Medtr1g005830.1 chr1 2 165516 166325 E Ribosomal protein S3 N-terminal Medtr1g005840.1 chr1 2 166331 166758 F hypothetical protein Medtr1g005850.1 chr1 2 167473 167954 E Ribosomal protein S3 N-terminal Medtr1g005860.1 chr1 2 167956 168681 E hypothetical protein Medtr1g005870.1 chr1 2 168752 170007 E hypothetical protein Medtr1g005880.1 chr1 2 170224 171167 I hypothetical protein Medtr1g005890.1 chr1 2 171745 171918 L hypothetical protein Medtr1g005900.1 chr1 2 173269 174220 I hypothetical protein Medtr1g005910.1 chr1 2 175440 175750 L hypothetical protein Medtr1g005920.1 chr1 2 176249 176422 L hypothetical protein Medtr1g005930.1 chr1 2 177091 179096 E NADH dehydrogenase (ubiquinone) 30 kDa subunit Medtr1g005940.1 chr1 2 179098 179632 E hypothetical protein Medtr1g005950.1 chr1 2 180293 180466 L hypothetical protein Medtr1g005960.1 chr1 2 184065 184572 E hypothetical protein Medtr1g005970.1 chr1 2 184574 186118 E Mitovirus RNA-dependent RNA polymerase Medtr1g005980.1 chr1 2 187199 187874 E hypothetical protein Medtr1g005990.1 chr1 2 187982 188622 E hypothetical protein Medtr1g006000.1 chr1 2 188857 190440 E ATPase FliI/YscN Medtr1g006010.1 chr1 2 190465 191739 E Copper center Cu(A) Medtr1g006020.1 chr1 2 191744 198355 E hypothetical protein Medtr1g006030.1 chr1 2 198357 198730 H hypothetical protein Medtr1g006040.1 chr1 2 199287 199562 L hypothetical protein Medtr1g006050.1 chr1 2 199875 201685 E Cytochrome c assembly protein Medtr1g006060.1 chr1 3 201704 202262 E hypothetical protein Medtr1g006070.1 chr1 3 202264 202628 E hypothetical protein Medtr1g006080.1 chr1 3 202806 203063 L hypothetical protein Medtr1g006090.1 chr1 3 204792 205235 I hypothetical protein Medtr1g006100.1 chr1 3 205311 205885 I hypothetical protein Medtr1g006110.1 chr1 3 206127 206405 L hypothetical protein Medtr1g006120.1 chr1 3 206576 207377 L hypothetical protein Medtr1g006130.1 chr1 3 207426 207626 L hypothetical protein Medtr1g006140.1 chr1 3 209494 209712 L hypothetical protein Medtr1g006150.1 chr1 3 209857 210076 L hypothetical protein Medtr1g006160.1 chr1 3 210552 211018 L hypothetical protein Medtr1g006170.1 chr1 3 211374 211852 E hypothetical protein Medtr1g006180.1 chr1 3 211854 212302 E hypothetical protein Medtr1g006190.1 chr1 3 212389 213610 E NADH-ubiquinone oxidoreductase chain 5 Medtr1g006200.1 chr1 3 213641 214420 E hypothetical protein Medtr1g006210.1 chr1 3 214457 214805 E NADH-ubiquinone oxidoreductase chain 5 putative Medtr1g006220.1 chr1 3 214823 215510 E S1 ribosomal protein putative Medtr1g006230.1 chr1 3 215542 216300 H hypothetical protein Medtr1g006240.1 chr1 3 216308 217717 E hypothetical protein Medtr1g006250.1 chr1 3 217720 218307 L hypothetical protein Medtr1g006260.1 chr1 3 218321 219691 E hypothetical protein Medtr1g006270.1 chr1 3 219693 220840 E hypothetical protein Medtr1g006280.1 chr1 3 220999 221923 E hypothetical protein Medtr1g006290.1 chr1 3 222298 223929 L hypothetical protein Medtr1g006300.1 chr1 3 223995 224171 L hypothetical protein Medtr1g006310.1 chr1 3 224367 224910 L hypothetical protein Medtr1g006320.1 chr1 3 224946 225312 E hypothetical protein Medtr1g006330.1 chr1 3 225584 227348 H Sec-independent periplasmic protein translocase Medtr1g006340.1 chr1 3 227387 227587 L hypothetical protein Medtr1g006350.1 chr1 3 228195 228478 L hypothetical protein Medtr1g006360.1 chr1 3 228653 228965 H hypothetical protein Medtr1g006370.1 chr1 3 228968 229442 H hypothetical protein Medtr1g006380.1 chr1 3 229522 230104 H hypothetical protein Medtr1g006390.1 chr1 3 230161 230690 E hypothetical protein Medtr1g006400.1 chr1 3 230708 231589 E hypothetical protein Medtr1g006410.1 chr1 3 231613 233107 E hypothetical protein Medtr1g006420.1 chr1 3 233852 234851 H hypothetical protein Medtr1g006430.1 chr1 3 235415 236409 E hypothetical protein Medtr1g006440.1 chr1 3 236466 236851 I hypothetical protein Medtr1g006450.1 chr1 3 236947 237557 I hypothetical protein Medtr1g006460.1 chr1 3 239263 239598 I hypothetical protein Medtr1g006470.1 chr1 3 240543 241021 L hypothetical protein Medtr1g006480.1 chr1 3 241109 241312 L hypothetical protein Medtr1g006490.1 chr1 3 241479 241655 L hypothetical protein Medtr1g006500.1 chr1 3 241700 243090 E hypothetical protein Medtr1g006510.1 chr1 3 243120 243810 E hypothetical protein Medtr1g006520.1 chr1 3 243812 244327 E hypothetical protein Medtr1g006530.1 chr1 3 245230 245972 F Cytochrome C oxidase subunit II transmembrane region Medtr1g006540.1 chr1 3 245997 247580 E ATPase FliI/YscN Medtr1g006550.1 chr1 3 247815 248663 E hypothetical protein Medtr1g006560.1 chr1 3 248954 249237 E hypothetical protein Medtr1g006570.1 chr1 3 249541 250228 E hypothetical protein Medtr1g006580.1 chr1 3 250275 251861 E Mitovirus RNA-dependent RNA polymerase Medtr1g006590.1 chr1 3 251863 252370 E hypothetical protein Medtr1g006600.1 chr1 3 254251 255389 E hypothetical protein Medtr1g006610.1 chr1 3 255452 255934 H hypothetical protein Medtr1g006620.1 chr1 3 256187 256790 E S1 ribosomal protein putative Medtr1g006630.1 chr1 3 256831 257240 E NADH-ubiquinone oxidoreductase chain 5 putative Medtr1g006640.1 chr1 3 257277 258056 E hypothetical protein Medtr1g006650.1 chr1 3 258087 259307 E NADH-ubiquinone oxidoreductase chain 5 Medtr1g006660.1 chr1 3 259408 259976 E hypothetical protein Medtr1g006670.1 chr1 3 260186 260505 L hypothetical protein Medtr1g006680.1 chr1 3 260679 261145 L hypothetical protein Medtr1g006690.1 chr1 3 261621 261840 L hypothetical protein Medtr1g006700.1 chr1 3 261985 262203 H hypothetical protein Medtr1g006710.1 chr1 3 263503 266783 I hypothetical protein Medtr1g006720.1 chr1 3 266878 267178 H hypothetical protein Medtr1g006730.1 chr1 3 267786 269527 E Cytochrome c oxidase subunit I Medtr1g006740.1 chr1 3 269529 270516 E Aminotransferases class-I pyridoxal-phosphate-binding site Medtr1g006750.1 chr1 3 270593 270941 E Ribosomal protein S10 bacterial form Medtr1g006760.1 chr1 3 270957 271633 E hypothetical protein Medtr1g006770.1 chr1 3 271635 272254 E hypothetical protein Medtr1g006780.1 chr1 3 272275 272739 E hypothetical protein Medtr1g006790.1 chr1 3 272741 273779 E hypothetical protein Medtr1g006800.1 chr1 3 273781 275827 E hypothetical protein Medtr1g006810.1 chr1 3 275950 276262 E hypothetical protein Medtr1g006820.1 chr1 3 276429 276632 L hypothetical protein Medtr1g006830.1 chr1 3 276720 277198 L hypothetical protein Medtr1g006840.1 chr1 3 278143 279629 I hypothetical protein Medtr1g006850.1 chr1 3 280269 280794 I hypothetical protein Medtr1g006860.1 chr1 3 280890 281275 I hypothetical protein Medtr1g006870.1 chr1 3 281332 282326 E hypothetical protein Medtr1g006880.1 chr1 3 282890 283889 I hypothetical protein Medtr1g006890.1 chr1 3 284634 285504 E hypothetical protein Medtr1g006900.1 chr1 3 285725 285925 L hypothetical protein Medtr1g006910.1 chr1 3 285983 286366 L hypothetical protein Medtr1g006920.1 chr1 3 288646 292331 E Ribosomal protein S14 Ribosomal protein L5 Medtr1g006930.1 chr1 3 292375 294429 E Cytochrome b/b6 N-terminal Cytochrome b/b6 C-terminal Medtr1g006940.1 chr1 3 294478 295077 E hypothetical protein Medtr1g006950.1 chr1 3 296098 298234 E hypothetical protein Medtr1g006960.1 chr1 3 298254 298802 H hypothetical protein Medtr1g006970.1 chr1 3 298851 299672 I hypothetical protein Medtr1g006980.1 chr1 4 301663 301893 L hypothetical protein Medtr1g006990.1 chr1 4 303503 304233 L hypothetical protein Medtr1g007000.1 chr1 4 305376 306001 I hypothetical protein Medtr1g007010.1 chr1 4 306215 306761 L hypothetical protein Medtr1g007020.1 chr1 4 306794 309794 E Intron maturase type II RNA-directed DNA polymerase (Reverse transcriptase) Respiratory-chain NADH dehydrogenase subunit 1 Medtr1g007030.1 chr1 4 309797 310133 H hypothetical protein Medtr1g007040.1 chr1 4 310136 310751 E Peptidase S26A signal peptidase I Respiratory-chain NADH dehydrogenase subunit 1 Medtr1g007050.1 chr1 4 311052 311885 E hypothetical protein Medtr1g007060.1 chr1 4 312614 313026 E hypothetical protein Medtr1g007070.1 chr1 4 313130 313326 E hypothetical protein Medtr1g007080.1 chr1 4 313438 314039 E putative Medtr1g007090.1 chr1 4 314311 315169 E hypothetical protein Medtr1g007100.1 chr1 4 315171 315570 E hypothetical protein Medtr1g007110.1 chr1 4 315572 315804 E NADH-ubiquinone oxidoreductase chain 2 putative Medtr1g007120.1 chr1 4 315812 316451 E hypothetical protein Medtr1g007130.1 chr1 4 317157 317733 E hypothetical protein Medtr1g007140.1 chr1 4 317749 318696 E NADH/Ubiquinone/plastoquinone (complex I) Medtr1g007150.1 chr1 4 318698 319107 E hypothetical protein Medtr1g007160.1 chr1 4 319174 319614 E hypothetical protein Medtr1g007170.1 chr1 4 319626 320129 E hypothetical protein Medtr1g007180.1 chr1 4 320452 320718 L hypothetical protein Medtr1g007190.1 chr1 4 320860 321024 L hypothetical protein Medtr1g007200.1 chr1 4 322220 323729 H hypothetical protein Medtr1g007210.1 chr1 4 324107 324346 L hypothetical protein Medtr1g007220.1 chr1 4 324482 325120 I hypothetical protein Medtr1g007230.1 chr1 4 325634 329423 E hypothetical protein Medtr1g007240.1 chr1 4 331204 331706 L hypothetical protein Medtr1g007250.1 chr1 4 334201 334436 E hypothetical protein Medtr1g007260.1 chr1 4 334689 335000 I hypothetical protein Medtr1g007270.1 chr1 4 335309 336466 E hypothetical protein Medtr1g007280.1 chr1 4 337526 337984 H hypothetical protein Medtr1g007290.1 chr1 4 338173 338798 H Cytochrome c-type biogenesis protein CcmB Medtr1g007300.1 chr1 4 340867 341148 L hypothetical protein Medtr1g007310.1 chr1 4 351409 363923 E hypothetical protein Medtr1g007320.1 chr1 4 372041 375614 E Cyclin-like F-box Medtr1g007330.1 chr1 4 380592 386013 E hypothetical protein Medtr1g007340.1 chr1 4 386723 387046 I hypothetical protein Medtr1g007350.1 chr1 4 394341 395099 H NB-ARC AAA ATPase Medtr1g007360.1 chr1 4 396210 400352 E Zinc finger C2H2-type Medtr1g094130.1 chr1 195 19403746 19404889 H hypothetical protein Medtr1g094140.1 chr1 195 19406020 19406829 H hypothetical protein Medtr1g094150.1 chr1 195 19407189 19407819 H Dilute Medtr1g094160.1 chr1 195 19407910 19408966 H XIE motor/ protein binding putative Medtr1g094170.1 chr1 195 19409868 19410337 L hypothetical protein Medtr1g094180.1 chr1 195 19412229 19417864 E TENA/THI-4 protein Medtr1g094190.1 chr1 195 19417872 19418175 E hypothetical protein Medtr1g094200.1 chr1 195 19418371 19420438 L hypothetical protein Medtr1g094210.1 chr1 195 19423481 19430237 E PGSIP6 transferase transferring glycosyl groups putative Medtr1g094220.1 chr1 195 19430379 19431098 I hypothetical protein Medtr1g094230.1 chr1 195 19431162 19431398 H replication protein 14 putative Medtr1g094240.1 chr1 195 19432669 19433435 H PGSIP6 transferase transferring glycosyl groups putative Medtr2g130240.1 chr2 318 31738544 31740232 I hypothetical protein Medtr2g130250.1 chr2 318 31741294 31742509 E Got1-like protein Medtr2g130260.1 chr2 318 31742512 31742699 E hypothetical protein Medtr2g130270.1 chr2 318 31745515 31747527 F hypothetical protein Medtr2g130280.1 chr2 318 31748597 31749614 E Protein of unknown function DUF1723 Medtr2g130290.1 chr2 318 31752103 31783338 E hypothetical protein Medtr2g130300.1 chr2 318 31783960 31804064 E hypothetical protein Medtr3g071240.1 chr3 167 16687414 16688117 H hypothetical protein Medtr3g071250.1 chr3 167 16689588 16691142 E hypothetical protein Medtr3g071260.1 chr3 167 16691144 16691846 E hypothetical protein Medtr3g071270.1 chr3 167 16692100 16692567 E hypothetical protein Medtr3g071280.1 chr3 167 16692788 16696288 E Peptidase C13 legumain Medtr3g071290.1 chr3 167 16696575 16698874 E Pentatricopeptide repeat Medtr3g071300.1 chr3 167 16699127 16699810 E Pentatricopeptide repeat Medtr3g071310.1 chr3 168 16727160 16727712 H hypothetical protein Medtr3g071320.1 chr3 168 16747875 16752842 F Aminotransferase class V Medtr3g071320.2 chr3 168 16748050 16752842 F Aminotransferase class V Medtr3g071320.3 chr3 168 16750120 16752842 F hypothetical protein Medtr3g071330.1 chr3 168 16755909 16763812 E SNF2-related Helicase C-terminal Homeodomain-like Medtr3g071340.1 chr3 168 16765495 16765862 L hypothetical protein Medtr3g071350.1 chr3 168 16766481 16770101 E SNF2-related DNA-directed RNA polymerase subunit A Medtr3g071360.1 chr3 168 16770103 16778501 E SNF2-related Chromo Medtr3g071370.1 chr3 168 16779761 16780084 E hypothetical protein Medtr3g128100.1 chr3 328 32700563 32701691 H hypothetical protein Medtr3g128110.1 chr3 328 32709700 32710057 L hypothetical protein Medtr3g128120.1 chr3 328 32711378 32711614 L hypothetical protein Medtr3g128130.1 chr3 328 32711854 32714102 E hypothetical protein Medtr3g128140.1 chr3 328 32716411 32718170 E hypothetical protein Medtr3g128150.1 chr3 328 32719736 32734908 E hypothetical protein Medtr3g128150.2 chr3 328 32719736 32733532 E hypothetical protein Medtr3g128150.3 chr3 328 32731508 32733608 E hypothetical protein Medtr3g128160.1 chr3 328 32736963 32749821 H Tetratricopeptide-like helical Medtr3g128170.1 chr3 328 32760360 32780257 E Protein kinase Medtr3g128170.2 chr3 328 32762191 32780257 E Protein kinase Medtr3g128180.1 chr3 328 32781013 32781820 E hypothetical protein Medtr3g128190.1 chr3 328 32782020 32787736 F Phosphofructokinase Medtr3g128190.2 chr3 328 32786309 32787736 F Phosphofructokinase Medtr3g128200.1 chr3 328 32789477 32791232 E Early nodulin 93 ENOD93 protein Medtr3g128200.2 chr3 328 32789477 32791232 E Early nodulin 93 ENOD93 protein Medtr3g128210.1 chr3 328 32791556 32794832 E Prefoldin Frigida-like Medtr3g128220.1 chr3 328 32794894 32795569 H Frigida-like related Medtr3g128230.1 chr3 328 32797309 32805013 E DALR anticodon binding Medtr3g153900.1 chr3 406 40586417 40586707 L hypothetical protein Medtr3g153910.1 chr3 406 40591489 40592528 L hypothetical protein Medtr3g153920.1 chr3 406 40592968 40595018 H Ribonuclease H putative Medtr3g153930.1 chr3 406 40595143 40604336 E WD40-like Medtr3g153930.2 chr3 406 40596544 40604336 E WD40-like Medtr3g153940.1 chr3 407 40604454 40609027 H hypothetical protein Medtr3g153950.1 chr3 407 40612387 40614579 E Glycoside hydrolase family 5 Medtr3g153960.1 chr3 407 40614653 40614961 E Ribosomal protein S19/S15 Medtr3g153970.1 chr3 407 40614967 40624335 E Amine oxidase Medtr3g153980.1 chr3 407 40624341 40628468 F Alpha/beta hydrolase fold Medtr3g153990.1 chr3 407 40633027 40633497 E hypothetical protein Medtr3g154000.1 chr3 407 40633906 40637364 E Protein kinase Medtr3g154010.1 chr3 407 40643210 40643398 E hypothetical protein Medtr3g154020.1 chr3 407 40643768 40643950 H hypothetical protein Medtr3g154030.1 chr3 407 40646045 40653863 H Kinesin motor region Medtr3g154040.1 chr3 407 40655679 40656860 H hypothetical protein Medtr3g154050.1 chr3 407 40659713 40659976 L hypothetical protein Medtr3g154060.1 chr3 407 40661146 40669900 E Protein of unknown function DUF726 Medtr3g154070.1 chr3 407 40670095 40670592 E glycine-rich protein Medtr3g154080.1 chr3 407 40672990 40673801 H Zinc finger B-box Medtr3g154090.1 chr3 407 40676863 40682023 E Forkhead-associated Medtr3g154100.1 chr3 407 40686382 40692172 E Ankyrin repeat domain-containing protein 2 related Medtr3g154110.1 chr3 407 40693649 40697496 E Transcription factor MADS-box Transcription factor K-box Medtr3g154120.1 chr3 407 40697512 40698630 E RNA-directed DNA polymerase (reverse transcriptase) related Medtr3g154130.1 chr3 407 40698632 40700701 E hypothetical protein Medtr3g156700.1 chr3 413 41208620 41210912 E hypothetical protein Medtr3g156710.1 chr3 413 41212304 41214596 E hypothetical protein Medtr3g156720.1 chr3 413 41215981 41218273 E hypothetical protein Medtr3g156730.1 chr3 413 41218780 41220037 H Cyclin-like F-box Medtr3g156740.1 chr3 413 41220140 41220684 E Diphthine synthase Medtr3g156750.1 chr3 413 41227728 41228703 E hypothetical protein Medtr3g156760.1 chr3 413 41229293 41231563 H hypothetical protein Medtr3g156770.1 chr3 413 41232981 41235994 E hypothetical protein Medtr3g156780.1 chr3 413 41236784 41236936 L hypothetical protein Medtr3g156790.1 chr3 413 41240111 41240386 H helicase-like protein putative Medtr3g156800.1 chr3 413 41242091 41242682 E hypothetical protein Medtr3g156810.1 chr3 413 41243064 41243222 H hypothetical protein Medtr3g156820.1 chr3 413 41244631 41253835 H DNA breaking-rejoining enzyme catalytic core Medtr3g156830.1 chr3 413 41257590 41264368 E RNA-directed DNA polymerase (Reverse transcriptase) Medtr3g156840.1 chr3 413 41266913 41267889 H hypothetical protein Medtr3g156850.1 chr3 413 41268532 41270913 E Proteinase inhibitor I4 serpin Medtr3g156860.1 chr3 413 41272272 41272668 E Multidrug resistance protein 13 putative Medtr3g156870.1 chr3 413 41276288 41276466 E NAD putative Medtr3g156880.1 chr3 413 41276468 41277659 E hypothetical protein Medtr3g156890.1 chr3 413 41277869 41281831 E RNA-binding protein Lupus La Winged helix repressor DNA-binding Medtr3g156900.1 chr3 413 41282857 41291855 H DNA breaking-rejoining enzyme catalytic core Medtr3g156910.1 chr3 413 41293881 41294798 E hypothetical protein Medtr3g156920.1 chr3 413 41294825 41295773 H Heat shock protein Hsp70 Medtr3g156930.1 chr3 413 41296023 41296538 H Heat shock protein Hsp70 Medtr3g156940.1 chr3 413 41298256 41298456 H Glycoside hydrolase family 9 Medtr3g156950.1 chr3 413 41299894 41300404 E hypothetical protein Medtr3g162810.1 chr3 427 42600213 42603623 F Inositol monophosphatase Histidinol-phosphate phosphatase putative inositol monophosphatase Medtr3g162820.1 chr3 427 42605088 42608502 E AAA ATPase 26S proteasome subunit P45 Medtr3g162830.1 chr3 427 42611770 42612131 H hypothetical protein Medtr3g162840.1 chr3 427 42614174 42614407 H Integrase catalytic region putative Medtr3g162850.1 chr3 427 42615848 42616216 I hypothetical protein Medtr3g162860.1 chr3 427 42617154 42621336 F hypothetical protein Medtr3g162860.2 chr3 427 42617154 42621336 F hypothetical protein Medtr3g162870.1 chr3 427 42622829 42626175 E Bromo adjacent region Zinc finger FYVE/PHD-type Medtr3g162880.1 chr3 427 42630931 42632473 F Dehydrin Medtr3g162890.1 chr3 427 42636230 42638565 E RNA-directed DNA polymerase (reverse transcriptase) related Medtr3g162900.1 chr3 427 42641170 42641429 H hypothetical protein Medtr3g162910.1 chr3 427 42644169 42645803 E Zinc finger B-box Medtr3g162920.1 chr3 427 42648018 42648836 E hypothetical protein Medtr3g162930.1 chr3 427 42648945 42659645 E Kinesin motor region Zinc finger RING-type Medtr3g162930.2 chr3 427 42648945 42652312 E Zinc finger RING-type Medtr3g162940.1 chr3 427 42669499 42674380 E SH3 Medtr3g162950.1 chr3 427 42676200 42684090 E Iron hydrogenase Medtr3g162950.3 chr3 427 42676200 42684090 E Iron hydrogenase Medtr3g162950.2 chr3 427 42676200 42684090 E Iron hydrogenase Medtr3g162960.1 chr3 427 42693979 42695467 E Zinc finger GATA-type Medtr3g162970.1 chr3 428 42702198 42705629 F Protein of unknown function DUF1640 Medtr3g162980.1 chr3 428 42713995 42718383 F Zinc finger CCHC-type Medtr3g162990.1 chr3 428 42719732 42723905 E Zinc finger CCHC-type Medtr3g163000.1 chr3 428 42725218 42727525 F 2OG-Fe(II) oxygenase Medtr3g163010.1 chr3 428 42728367 42730326 E hypothetical protein Medtr3g163020.1 chr3 428 42730604 42731326 E hypothetical protein Medtr3g163030.1 chr3 428 42735976 42748443 E 2OG-Fe(II) oxygenase Medtr3g163040.1 chr3 428 42752513 42759615 E Calcium-binding EF-hand SWIB/MDM2 Plus-3 Zinc finger FYVE/PHD-type Medtr3g163050.1 chr3 428 42760802 42762859 E GYF Medtr3g163060.1 chr3 428 42775045 42778989 E Glycoside transferase six-hairpin subgroup Medtr3g163070.1 chr3 428 42793541 42795733 E hypothetical protein Medtr3g163580.1 chr3 431 43003008 43004913 E hypothetical protein Medtr3g163590.1 chr3 431 43005033 43013437 E Exportin-7-B related Medtr3g163600.1 chr3 431 43020639 43026471 E Exportin-7-B related Medtr3g163610.1 chr3 431 43027018 43027212 L hypothetical protein Medtr3g163620.1 chr3 431 43028839 43031897 E Glutamate-1-semialdehyde-2 1-aminomutase Medtr3g163630.1 chr3 431 43033343 43035661 E hypothetical protein Medtr3g163640.1 chr3 431 43035663 43036307 E hypothetical protein Medtr3g163650.1 chr3 431 43038505 43040642 F iron-stress related protein putative Medtr3g163660.1 chr3 431 43041525 43042255 E hypothetical protein Medtr3g163670.1 chr3 431 43042300 43042495 H hypothetical protein Medtr3g163680.1 chr3 431 43043369 43045168 E Mago nashi protein Medtr3g163690.1 chr3 431 43047431 43050371 E ATP-requiring DNA helicase RecQ Medtr3g163700.1 chr3 431 43050377 43050764 E hypothetical protein Medtr3g163710.1 chr3 431 43058792 43059010 H hypothetical protein Medtr3g163720.1 chr3 431 43059344 43060132 E hypothetical protein Medtr3g163730.1 chr3 431 43061392 43062573 E Anti-silencing protein ASF1-like Medtr3g163740.1 chr3 431 43063765 43070872 E DNA polymerase III clamp loader subunit C-terminal Medtr3g163750.1 chr3 431 43078142 43082518 E hypothetical protein Medtr3g163760.1 chr3 431 43084408 43088859 E Mlo-related protein Medtr3g163760.3 chr3 431 43084408 43087880 E Mlo-related protein Medtr3g163760.2 chr3 431 43084408 43087765 E Mlo-related protein Medtr3g163770.1 chr3 431 43092701 43098309 E Ribosomal protein S2 UTP--glucose-1-phosphate uridylyltransferase Medtr3g163780.1 chr3 431 43098311 43102672 E hypothetical protein Medtr5g040940.1 chr5 176 17507121 17510920 E hypothetical protein Medtr5g040950.3 chr5 176 17507121 17512527 E hypothetical protein Medtr5g040950.1 chr5 176 17510922 17512568 E hypothetical protein Medtr5g040950.2 chr5 176 17510922 17512568 E hypothetical protein Medtr5g040960.1 chr5 176 17514200 17516629 E SANT associated Medtr5g040970.1 chr5 176 17516635 17523515 E HAD-superfamily subfamily IA hydrolase REG-2-like Medtr5g040980.1 chr5 176 17527323 17528830 H hypothetical protein Medtr5g040990.1 chr5 176 17535077 17536440 H hypothetical protein Medtr5g041000.1 chr5 176 17536498 17536991 H Cyclin-like F-box Medtr5g041010.1 chr5 176 17538629 17538883 H hypothetical protein Medtr5g041020.1 chr5 176 17540171 17540404 L hypothetical protein Medtr5g041030.1 chr5 176 17543669 17549830 E BRCT DNA nucleotidylexotransferase (TDT) DNA polymerase beta-like region Medtr5g041040.1 chr5 176 17551866 17554357 E Cullin Medtr5g041050.1 chr5 176 17557433 17561348 E Cullin Medtr5g041060.1 chr5 176 17562617 17562796 H hypothetical protein Medtr5g041070.1 chr5 176 17578369 17579949 E hypothetical protein Medtr5g041080.1 chr5 176 17586205 17586710 E Cullin Medtr5g041090.1 chr5 176 17586712 17588334 E hypothetical protein Medtr5g041100.1 chr5 176 17590856 17596514 E Origin recognition complex subunit 6 Medtr5g041110.1 chr5 176 17596516 17599241 E hypothetical protein Medtr5g041120.1 chr5 177 17604215 17604373 L hypothetical protein Medtr5g041130.1 chr5 177 17605691 17608456 E Tyrosine protein kinase active site Medtr5g041140.1 chr5 177 17608938 17610397 H Haem peroxidase plant/fungal/bacterial Medtr5g041150.1 chr5 177 17611697 17612561 E hypothetical protein Medtr5g041160.1 chr5 177 17613197 17617331 E Helicase C-terminal Medtr5g041160.2 chr5 177 17613251 17617331 E Helicase C-terminal Medtr5g041170.1 chr5 177 17617993 17619607 H SNF2-related Medtr5g041180.1 chr5 177 17620640 17620834 H transcription regulatory protein SNF2 putative Medtr5g041190.1 chr5 177 17622378 17622963 H hypothetical protein Medtr5g041200.1 chr5 177 17623457 17623725 H hypothetical protein Medtr5g041210.1 chr5 177 17623821 17624729 H Nucleic acid-binding OB-fold subgroup Medtr5g041220.1 chr5 177 17626112 17627260 H hypothetical protein Medtr5g041230.1 chr5 177 17640842 17641437 H hypothetical protein Medtr5g041240.1 chr5 177 17642065 17642895 H hypothetical protein Medtr5g041250.1 chr5 177 17643543 17644286 H Immunoglobulin/major histocompatibility complex Medtr5g041260.1 chr5 177 17652309 17652611 I hypothetical protein Medtr5g041270.1 chr5 177 17652681 17653466 H hypothetical protein Medtr5g041280.1 chr5 177 17654806 17657420 H Nucleic acid-binding OB-fold subgroup Medtr5g041290.1 chr5 177 17660065 17665622 E Late nodulin Medtr5g041300.1 chr5 177 17671104 17671349 E Photosystem I psaA and psaB Medtr5g041310.1 chr5 177 17671420 17671700 E Photosystem I psaA and psaB Medtr5g041320.1 chr5 177 17672452 17676834 E Helix-loop-helix DNA-binding Medtr5g041330.1 chr5 177 17682892 17684095 H Helicase C-terminal Medtr5g041340.1 chr5 177 17684757 17686371 H SNF2-related Medtr5g041350.1 chr5 177 17687404 17687598 H transcription regulatory protein SNF2 putative Medtr5g041360.1 chr5 177 17689142 17689727 H hypothetical protein Medtr5g041370.1 chr5 177 17690220 17690488 H hypothetical protein Medtr5g041380.1 chr5 177 17690584 17691492 H Nucleic acid-binding OB-fold subgroup Medtr5g041390.1 chr5 177 17692875 17700429 H hypothetical protein Medtr7g039930.1 chr7 95 9401671 9405780 H RNA-directed DNA polymerase (reverse transcriptase) related Medtr7g039940.1 chr7 95 9406955 9408690 E IMP dehydrogenase/GMP reductase related putative Medtr7g039950.1 chr7 95 9414465 9416012 E Protein of unknown function DUF1723 Medtr7g039960.1 chr7 95 9416779 9417030 H hypothetical protein Medtr7g039970.1 chr7 95 9418144 9419735 E UDP-glucuronosyl/UDP-glucosyltransferase Medtr7g039980.1 chr7 95 9421865 9422806 E UDP-glucuronosyl/UDP-glucosyltransferase Medtr7g039990.1 chr7 95 9427832 9427984 H Head-to-tail joining protein W gpW Medtr7g040000.1 chr7 95 9428038 9428676 H Phage terminase GpA Medtr7g040010.1 chr7 95 9428955 9429197 H Bacteriophage protein putative Medtr7g040020.1 chr7 95 9429277 9429648 H DNA breaking-rejoining enzyme catalytic core Medtr7g040030.1 chr7 95 9429881 9430495 I Carbamoyl-phosphate synthase L chain ATP-binding Medtr7g040040.1 chr7 95 9430881 9432154 E IQ calmodulin-binding region Medtr7g040050.1 chr7 95 9475138 9475509 I hypothetical protein Medtr7g040060.1 chr7 95 9476435 9479413 H hypothetical protein Medtr8g005000.1 chr8 1 49997 50206 H hypothetical protein Medtr8g005010.1 chr8 1 53778 55204 E Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase Medtr8g005020.1 chr8 1 57728 58365 E hypothetical protein Medtr8g005030.1 chr8 1 62992 71154 F Proteinase inhibitor I4 serpin emp24/gp25L/p24 Medtr8g005040.1 chr8 1 72273 73973 E IMP dehydrogenase/GMP reductase putative Medtr8g005050.1 chr8 1 73975 74748 E IMP dehydrogenase/GMP reductase putative Medtr8g005060.1 chr8 1 78271 79460 E Harpin-induced 1 Medtr8g005070.1 chr8 1 83718 83921 H hypothetical protein Medtr8g005080.1 chr8 1 84132 85492 E hypothetical protein Medtr8g005090.1 chr8 1 93545 94128 H N-6 Adenine-specific DNA methylase putative Medtr8g005100.1 chr8 1 97192 100094 H Bromodomain Medtr8g005110.1 chr8 2 101811 102323 H IMP dehydrogenase/GMP reductase putative Medtr8g005120.1 chr8 2 105371 106738 E hypothetical protein Medtr8g005130.1 chr8 2 108506 110850 E hypothetical protein Medtr8g005140.1 chr8 2 111619 111856 E C33G8.2 related putative Medtr8g005150.1 chr8 2 113708 114013 H putative Medtr8g005160.1 chr8 2 114134 114397 H Zinc finger SWIM-type putative Medtr8g005170.1 chr8 2 115194 115481 H Zinc finger PMZ-type Medtr8g005180.1 chr8 2 115599 115895 H hypothetical protein Medtr8g005190.1 chr8 2 116692 117969 E Integrase catalytic region related Medtr8g005200.1 chr8 2 120703 123372 E Glycoside hydrolase family 5 Medtr8g005210.1 chr8 2 127364 127998 H hypothetical protein Medtr8g005220.1 chr8 2 134181 136706 H Peptidase S8A bacillopeptidase F Medtr8g005230.1 chr8 2 138964 140227 E hypothetical protein Medtr8g005240.1 chr8 2 140658 140858 H hypothetical protein Medtr8g005250.1 chr8 2 141473 141652 H hypothetical protein Medtr8g005260.1 chr8 2 144322 146450 E Thioredoxin fold Medtr8g005270.1 chr8 2 161444 162571 E hypothetical protein Medtr8g005280.1 chr8 2 169587 170703 H probable reverse transcriptase At2g02650 - related related Medtr8g005290.1 chr8 2 172583 176537 E KH type 1 Medtr8g005300.1 chr8 2 181710 184971 F Plant acid phosphatase Medtr8g005310.1 chr8 2 187405 190181 E Acid phosphatase (Class B) Medtr8g005320.1 chr8 2 192246 193683 E hypothetical protein Medtr8g005330.1 chr8 3 216379 217527 E Lung seven transmembrane receptor Medtr8g005340.1 chr8 3 217657 219442 H Lung seven transmembrane receptor Medtr8g005350.1 chr8 3 221070 222507 E hypothetical protein Medtr8g005360.1 chr8 3 224572 227348 E Acid phosphatase (Class B) Medtr8g005370.1 chr8 3 229782 230182 F hypothetical protein Medtr8g005380.1 chr8 3 230184 233022 F Plant acid phosphatase Medtr8g005390.1 chr8 3 238216 242171 E KH type 1 Medtr8g005400.1 chr8 3 244051 245167 H probable reverse transcriptase At2g02650 - related related Medtr8g005410.1 chr8 3 252183 253310 E hypothetical protein Medtr8g005420.1 chr8 3 268305 270432 E Thioredoxin fold Medtr8g005430.1 chr8 3 273102 273281 H hypothetical protein Medtr8g005440.1 chr8 3 273896 274096 H hypothetical protein Medtr8g005450.1 chr8 3 274527 275790 E hypothetical protein Medtr8g005460.1 chr8 3 278048 280573 H Peptidase S8A bacillopeptidase F Medtr8g005470.1 chr8 3 286756 287390 H hypothetical protein Medtr8g005480.1 chr8 3 291382 294051 E Glycoside hydrolase family 5 Medtr8g005490.1 chr8 3 295101 295876 L hypothetical protein Medtr8g005500.1 chr8 3 296787 299128 E reverse transcriptase putative Medtr8g005510.1 chr8 4 300847 303768 H Peptidase S8A bacillopeptidase F Medtr8g005520.1 chr8 4 303969 306521 E Tyrosine protein kinase Medtr8g005530.1 chr8 4 309169 309806 H ATPase E1-E2 type Medtr8g005540.1 chr8 4 309912 310070 H hypothetical protein Medtr8g005550.1 chr8 4 310279 312612 H ATPase E1-E2 type Medtr8g005560.1 chr8 4 312750 313700 H hypothetical protein Medtr8g005570.1 chr8 4 314661 315935 E hypothetical protein Medtr8g005580.1 chr8 4 331210 332358 E Lung seven transmembrane receptor Medtr8g005590.1 chr8 4 332488 334304 E Lung seven transmembrane receptor Medtr8g005600.1 chr8 4 337248 341121 E EGF-like calcium-binding Protease-associated PA Growth factor receptor Medtr8g005610.1 chr8 4 342536 343745 H hypothetical protein Medtr8g005620.1 chr8 4 344532 366077 E CCR4-Not complex component Not1 Medtr8g005620.2 chr8 4 344532 361798 E hypothetical protein Medtr8g005630.1 chr8 4 366976 367633 E hypothetical protein Medtr8g005640.1 chr8 4 380070 380705 E hypothetical protein Medtr8g005650.1 chr8 4 383243 384725 E Pentatricopeptide repeat Medtr8g005660.1 chr8 4 392086 392483 E zinc ion binding Medtr8g005670.1 chr8 4 394337 394663 H Sodium/hydrogen exchanger Medtr8g005680.1 chr8 4 394887 395894 E hypothetical protein Medtr8g005690.1 chr8 4 399172 400230 H Peptidoglycan binding-like