<pre>Figure 1 alignment: MSF format

 nad4_f1.msf  MSF: 171  Type: N  January 01, 1776  12:00  Check: 2713 ..

 Name: EC2280           Len:   171  Check:  1731  Weight:  1.00
 Name: NU6M_HUMAN       Len:   171  Check:  4145  Weight:  1.00
 Name: NU6M_XENLA       Len:   171  Check:  6839  Weight:  1.00
 Name: Rv3154           Len:   171  Check:  4621  Weight:  1.00
 Name: nad6_PRA         Len:   171  Check:  5377  Weight:  1.00

//

         EC2280  MEFAFYICGL IAILATLRVI THTNPVHALL YLIISLLAIS GVFFSLGAYF
     NU6M_HUMAN  MMYALFLLSV GLVMGFVGFS SKPSPIYGGL VLIVSGVVGC VIILNFGGGY
     NU6M_XENLA  MIYMVSVSMM VLVLGLVAVA SNPSPFYAAL GLVLAAGAGC LVIVSFGSSF
         Rv3154  EAVMFWVLSA LALLGAVGVV LAVNAVYSAM FLAMTMIILA VFYMAQDALF
       nad6_PRA  E-ILFYFFSF LALSSATLVI ASSNPIHSVL FLVLVFCSTS GLFILIEAEF

         EC2280  AGALEIIVYA GAIMVLFVFV VMMLNLGGSE IEQERQWLKP QVWIGPAILS
     NU6M_HUMAN  MGLMVFLIYL GGMMVVFGYT TAMAIEEYPE AWGSGVEVLV SVLVGLAMEV
     NU6M_XENLA  LSIVLFLIYL GGMLVVFAYS AARA-KPYPE AWGS--WSVV FYVLVYLIGV
         Rv3154  LGVVQVVVYT GAVMMLFLFV LMLIGVDSAE SLKETLRGQR VAAVLTGVGF
       nad6_PRA  IAMIFIMVYV GAIAVLFLFV VMMLNVRLVQ FNVNMLRYLP LGGVIGLIFL

         EC2280  AIM------- LVVIVYAILG VNDQGIDGT- ----PISAKA VGITLFGPYV
     NU6M_HUMAN  GLVLWVKEYD GVVVVVNFNS VGSWMIYEGE GSGLIREDPI GAGALYDYGR
     NU6M_XENLA  LVW------Y LFLGGVEVDG MNKSSELGS- ---YVMRGDW VGVALMYSCW
         Rv3154  GVL------- LISTIGQVAT RGFAGLTVAN ---ANGNVEG LAALIFSRYL
       nad6_PRA  LELFLIIDSD LIPLFGLNIN NNIAPFQWAD TIDSITNVEA IGKLLYTHYF

         EC2280  LAVELASMLL LAGLVVAFHV G
     NU6M_HUMAN  WLVVVTGWTL FVGVYIVIEI A
     NU6M_XENLA  WVIIVYWW-- -VSIIINFVC G
         Rv3154  WAFELTSALL ITAAVGAMVL A
       nad6_PRA  YLFLVSGMIL LVAMIGAIVL T

Figure 1 alignment: FASTA format

>EC2280
MEFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGGS
EIEQERQWLKPQVWIGPAILSAIM-------LVVIVYAILGVNDQGIDGT-----PISAKAVGITLFGPYVLAVELASM
LLLAGLVVAFHVG
>NU6M_HUMAN
MMYALFLLSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCVIILNFGGGYMGLMVFLIYLGGMMVVFGYTTAMAIEEYP
EAWGSGVEVLVSVLVGLAMEVGLVLWVKEYDGVVVVVNFNSVGSWMIYEGEGSGLIREDPIGAGALYDYGRWLVVVTGW
TLFVGVYIVIEIA
>NU6M_XENLA
MIYMVSVSMMVLVLGLVAVASNPSPFYAALGLVLAAGAGCLVIVSFGSSFLSIVLFLIYLGGMLVVFAYSAARA-KPYP
EAWGS--WSVVFYVLVYLIGVLVW------YLFLGGVEVDGMNKSSELGS----YVMRGDWVGVALMYSCWWVIIVYWW
---VSIIINFVCG
>Rv3154
EAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSA
ESLKETLRGQRVAAVLTGVGFGVL-------LISTIGQVATRGFAGLTVAN---ANGNVEGLAALIFSRYLWAFELTSA
LLITAAVGAMVLA
>nad6_PRA
E-ILFYFFSFLALSSATLVIASSNPIHSVLFLVLVFCSTSGLFILIEAEFIAMIFIMVYVGAIAVLFLFVVMMLNVRLV
QFNVNMLRYLPLGGVIGLIFLLELFLIIDSDLIPLFGLNINNNIAPFQWADTIDSITNVEAIGKLLYTHYFYLFLVSGM
ILLVAMIGAIVLT


</pre>