<pre>Figure 4 alignment: MSF format

 Q0085_f4.msf  MSF: 232  Type: N  January 01, 1776  12:00  Check: 43 ..

 Name: ATP6_HUMAN       Len:   232  Check:  2570  Weight:  1.00
 Name: HP0828           Len:   232  Check:  5553  Weight:  1.00
 Name: Q0085            Len:   232  Check:  9118  Weight:  1.00
 Name: Rv1304           Len:   232  Check:  8677  Weight:  1.00
 Name: EC3738           Len:   232  Check:  4125  Weight:  1.00

//

     ATP6_HUMAN  SFIAPTILGL PAAVLIILFP PLLIPTSKYL --INNRLITT QQWLIKLTS-
         HP0828  TIANFFSSNH DFITGFFVVL TAVLMFLISL GASRKMQMVP MGLQNVYESI
          Q0085  SFIDLSCLNL TTFSLYTIIV LLVITSLYTL -TNNNNKIIG SRWLISQEAI
         Rv1304  TWLG-MTVNT DTVLSTAIAG LIVIALAFYL RAKVTSTDVP GGVQLFFEAI
         EC3738  PPATFWTINI DSMFFSVVLG LLFLVLFRSV -AKKATSGVP GKFQTAIELV

     ATP6_HUMAN  -KQMMTMHNT K--GRTWSL- --MLVSLIIF IATTNLLGLL P-----H---
         HP0828  ISAILSVAKD IIGEELARKY FPLAGTIALY VFFSNMIGII P-----G---
          Q0085  YDTIMNMTKG QIGGKNWGLY FPMIFTLFMF IFIANLISMI P-----Y---
         Rv1304  TIQMRNQVES AIGMRIAPFV LPLAVTIFVF ILISNWLAVL PV---QYTDK
         EC3738  IGFVNGSVKD MYHGK-SKLI APLALTIFVW VFLMNLMDLL PIDLLPYIAE

     ATP6_HUMAN  --------SF TPTTQLSMNL AMAIPLWAGT VIMGFRSKIK NAL--AHFLP
         HP0828  --------FE SPTASWSFTL VLALIVFFYY HFEGIRVQGF FK---YFAHF
          Q0085  --------SF ALSAHLVFII SLSIVIWLGN TILGLYKHGW VFF--SLFVP
         Rv1304  HGHTTE-LLK SAAADINYVL ALALFVFVCY HTAGIWRRGI ------VGHP
         EC3738  HVLGLPALRV VPSADVNVTL SMALGVFILI LFYSIKMKGI GGFTKELTLQ

     ATP6_HUMAN  QGTPTPLIPM LVIIETISLL IQPMALAVRL TANITAGHLL MHLIGSA---
         HP0828  AGPVKWLAPF MFPIEIISHF SRIVSLSFRL FGNI-KGDDM FLLIMLL---
          Q0085  AGTPLPLVPL LVIIETLSYF ARAISLGLRL GSNILAGHLL MVILAGL---
         Rv1304  IKLLKGHVTL LAPINLVEEV AKPISLSLRL FGNIFAGGIL VALIALFP-P
         EC3738  PFNHWAFIPV NLILEGVSLL SKPVSLGLRL FGNMYAGELI FILIAGLLPW

     ATP6_HUMAN  TLAMSTINLP STLIIF--TI LIL-LTILEI AV
         HP0828  LVPWAVPVAP FMVLFFMGIL QAFVFMILTY VY
          Q0085  TFNFMLINLF TLVFGFVPLA MILAIMMLEF AI
         Rv1304  YIMWAPNAIW KAFDLFVGAI QAFIFALLTI LY
         EC3738  WSQWILNVPW AIFHILIITL QAFIFMVLTI VY

Figure 4 alignment: FASTA format

>ATP6_HUMAN
SFIAPTILGLPAAVLIILFPPLLIPTSKYL--INNRLITTQQWLIKLTS--KQMMTMHNTK--GRTWSL---MLVSLII
FIATTNLLGLLP-----H-----------SFTPTTQLSMNLAMAIPLWAGTVIMGFRSKIKNAL--AHFLPQGTPTPLI
PMLVIIETISLLIQPMALAVRLTANITAGHLLMHLIGSA---TLAMSTINLPSTLIIF--TILIL-LTILEIAV
>HP0828
TIANFFSSNHDFITGFFVVLTAVLMFLISLGASRKMQMVPMGLQNVYESIISAILSVAKDIIGEELARKYFPLAGTIAL
YVFFSNMIGIIP-----G-----------FESPTASWSFTLVLALIVFFYYHFEGIRVQGFFK---YFAHFAGPVKWLA
PFMFPIEIISHFSRIVSLSFRLFGNI-KGDDMFLLIMLL---LVPWAVPVAPFMVLFFMGILQAFVFMILTYVY
>Q0085
SFIDLSCLNLTTFSLYTIIVLLVITSLYTL-TNNNNKIIGSRWLISQEAIYDTIMNMTKGQIGGKNWGLYFPMIFTLFM
FIFIANLISMIP-----Y-----------SFALSAHLVFIISLSIVIWLGNTILGLYKHGWVFF--SLFVPAGTPLPLV
PLLVIIETLSYFARAISLGLRLGSNILAGHLLMVILAGL---TFNFMLINLFTLVFGFVPLAMILAIMMLEFAI
>Rv1304
TWLG-MTVNTDTVLSTAIAGLIVIALAFYLRAKVTSTDVPGGVQLFFEAITIQMRNQVESAIGMRIAPFVLPLAVTIFV
FILISNWLAVLPV---QYTDKHGHTTE-LLKSAAADINYVLALALFVFVCYHTAGIWRRGI------VGHPIKLLKGHV
TLLAPINLVEEVAKPISLSLRLFGNIFAGGILVALIALFP-PYIMWAPNAIWKAFDLFVGAIQAFIFALLTILY
>EC3738
PPATFWTINIDSMFFSVVLGLLFLVLFRSV-AKKATSGVPGKFQTAIELVIGFVNGSVKDMYHGK-SKLIAPLALTIFV
WVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFILILFYSIKMKGIGGFTKELTLQPFNHWAFI
PVNLILEGVSLLSKPVSLGLRLFGNMYAGELIFILIAGLLPWWSQWILNVPWAIFHILIITLQAFIFMVLTIVY


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