<pre>Figure 5 alignment: MSF format

 YER178W_f5.msf  MSF: 282  Type: N  January 01, 1776  12:00  Check: 14 ..

 Name: APE1677          Len:   282  Check:  8897  Weight:  1.00
 Name: CT245            Len:   282  Check:  2433  Weight:  1.00
 Name: ODPA_HUMAN       Len:   282  Check:  1455  Weight:  1.00
 Name: YER178W          Len:   282  Check:  8053  Weight:  1.00
 Name: bsubtilis-pdha   Len:   282  Check:  9176  Weight:  1.00

//

        APE1677  GQEAVAVGAA KPLRRDDWVF PSYRELGAYL VRGMSEEEIL DRALANADDP
          CT245  GQEAVATAAI ACTGKDHWFF SSYRCHGVAL LLDIPLRQLA AELLGKETGC
     ODPA_HUMAN  GQEACCVGLE AGINPTDHLI TAYRAHGFTF TRGLSVREIL AELTGRKGGC
        YER178W  GQEAIAVGIE NAITKLDSII TSYRCHGFTF MRGASVKAVL AELMGRRAGV
 bsubtilis-pdha  GQEASQIATH FALEKEDFVL PGYRDVPQLI WHGLP----L YQAFLFSRGH

        APE1677  LKGSDFAIFG NRKYNLVPAP VPVGNQIPIS VGAAYAMKYL GRDTVTLTFF
          CT245  ALGRGGSMHM CG-DRLPGGF GIVGGQIPLA AGAAFSMKYQ NSSSISMCFI
     ODPA_HUMAN  AKGKGGSMHM YA-KNFYGGN GIVGAQVPLG AGIALACKYN GKDEVCLTLY
        YER178W  SYGKGGSMHL YA-PGFYGGN GIVGAQVPLG AGLAFAHQYK NEDACSFTLY
 bsubtilis-pdha  FRGNQMPDDV N---ALSPQ- IIIGAQYIQT AGVALGLKKR GKKAVAITYT

        APE1677  GDGATSRGDF HAGLNFAGVF KVPAVLVIQN NQWAISVPRA RQTAAPSLAV
          CT245  GDGAVAQGVF HETLNFVALH SLPLMLIIEN NGWSMGTALH RAIAKQPIAE
     ODPA_HUMAN  GDGAANQGQI FEAYNMAALW KLPCIFICEN NRYGMGTSVE RAAASTDYYK
        YER178W  GDGASNQGQV FESFNMAKLW NLPVVFCCEN NKYGMGTAAS RSSAMTEYFK
 bsubtilis-pdha  GDGGASQGDF YEGINFAGAY KAPAIFVVQN NRYAISTPVE KQSAAETIAQ

        APE1677  KGLAYGVPGV -RIDGNDVMV VYKIVSDAAE KARRGGGPTL IEAVTYRLGP
          CT245  SQAISYGLSS ITLNGFDLFN SLIGFREAYH HMQQTGSPII VEALCSRFRG
     ODPA_HUMAN  RGDFIPGLR- --VDGMDILC VREATRFAAA YCRSGKGPIL MELQTYRYHG
        YER178W  RGQYIPGLK- --VNGMDILA VYQASKFAKD WCLSGKGPLV LEYETYRYGG
 bsubtilis-pdha  KAVAAGIVGV -QVDGMDPLA VYAATAEARE RAINGEGPTL IETLTFRYGP

        APE1677  HTTA-DDPS- RYRTSEEERI M-ERYEPLRR MRKFMESMGI LTEKEALSIE
          CT245  HSIS--DPN- LYRSKEEMQC L-LKRDPILF AKEWLIRANV LSEDDFKDLR
     ODPA_HUMAN  HSMS--DPGV SYRTREEIQE VRSKSDPIML LKDRMVNSNL ASVEELKEID
        YER178W  HSMS--DPGT TYRTRDEIQH MRSKNDPIAG LKMHLIDLGI ATEAEVKAYD
 bsubtilis-pdha  HTMAGDDPT- KYRTKEIENE W-EQKDPLVR FRAFLENKGL WSEEEEAKVI

        APE1677  EEWNSKVEEI V--RKVLAKP PLPENVFFQN VY
          CT245  QTSKTAVLEA V--AQARLDP EPAVATLEEG VY
     ODPA_HUMAN  VEVRKEIEDA A--QFATADP EPPLEELGYH IY
        YER178W  KSARKYVDEQ VELADAAPPP EAKLSILFED VY
 bsubtilis-pdha  EDAKEEIKQA I--KKADAEP KQKVTDLMKI MY

Figure 5 alignment: FASTA format

>APE1677
GQEAVAVGAAKPLRRDDWVFPSYRELGAYLVRGMSEEEILDRALANADDPLKGSDFAIFGNRKYNLVPAPVPVGNQIPI
SVGAAYAMKYLGRDTVTLTFFGDGATSRGDFHAGLNFAGVFKVPAVLVIQNNQWAISVPRARQTAAPSLAVKGLAYGVP
GV-RIDGNDVMVVYKIVSDAAEKARRGGGPTLIEAVTYRLGPHTTA-DDPS-RYRTSEEERIM-ERYEPLRRMRKFMES
MGILTEKEALSIEEEWNSKVEEIV--RKVLAKPPLPENVFFQNVY
>CT245
GQEAVATAAIACTGKDHWFFSSYRCHGVALLLDIPLRQLAAELLGKETGCALGRGGSMHMCG-DRLPGGFGIVGGQIPL
AAGAAFSMKYQNSSSISMCFIGDGAVAQGVFHETLNFVALHSLPLMLIIENNGWSMGTALHRAIAKQPIAESQAISYGL
SSITLNGFDLFNSLIGFREAYHHMQQTGSPIIVEALCSRFRGHSIS--DPN-LYRSKEEMQCL-LKRDPILFAKEWLIR
ANVLSEDDFKDLRQTSKTAVLEAV--AQARLDPEPAVATLEEGVY
>ODPA_HUMAN
GQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYA-KNFYGGNGIVGAQVPL
GAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGL
R---VDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMS--DPGVSYRTREEIQEVRSKSDPIMLLKDRMVN
SNLASVEELKEIDVEVRKEIEDAA--QFATADPEPPLEELGYHIY
>YER178W
GQEAIAVGIENAITKLDSIITSYRCHGFTFMRGASVKAVLAELMGRRAGVSYGKGGSMHLYA-PGFYGGNGIVGAQVPL
GAGLAFAHQYKNEDACSFTLYGDGASNQGQVFESFNMAKLWNLPVVFCCENNKYGMGTAASRSSAMTEYFKRGQYIPGL
K---VNGMDILAVYQASKFAKDWCLSGKGPLVLEYETYRYGGHSMS--DPGTTYRTRDEIQHMRSKNDPIAGLKMHLID
LGIATEAEVKAYDKSARKYVDEQVELADAAPPPEAKLSILFEDVY
>bsubtilis-pdha
GQEASQIATHFALEKEDFVLPGYRDVPQLIWHGLP----LYQAFLFSRGHFRGNQMPDDVN---ALSPQ-IIIGAQYIQ
TAGVALGLKKRGKKAVAITYTGDGGASQGDFYEGINFAGAYKAPAIFVVQNNRYAISTPVEKQSAAETIAQKAVAAGIV
GV-QVDGMDPLAVYAATAEARERAINGEGPTLIETLTFRYGPHTMAGDDPT-KYRTKEIENEW-EQKDPLVRFRAFLEN
KGLWSEEEEAKVIEDAKEEIKQAI--KKADAEPKQKVTDLMKIMY


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