Supplementary material for Neiman et al. (May 15, 2001) Proc. Natl. Acad. Sci. USA, 10.1073/pnas.111144898

Table 3

. Genes with at least 3-fold change in mRNA expression during normal embryonic bursal development

Clone name

Homology

Expressed early (clusters 1 and 4)

 

Pat_10B6 (pat.pk0041.c12)

Ribonuclease

Pat_11B3 (pat.pk0025.d4)

CD 3

Pat_12E12 (pat.pk0078.b5)

LMO4

Pat_13B11 (pat.pk0008.f2)

Histone H5

Pat_13D10 (pat.pk0020.d10)

Granzyme B

Pat_1C10 (pat.pk0008.b4)

Glutathione-S-transferase

Pat_2H11 (pat.pk0024.f7f)

NK lysin

Pat_3A7 (pat.pk0025.d4)

CD 3 epsilon

Pat_3E12 (pat.pk)

CD3 E gallus gallus

Pat_4A2 (pat.pk0035.g9f)

Quiescence specific protein

Pat_4F5 (pat.pk0040.f3f)

Cathepsin K

Pat_5A5 (pat.pk0043.d12f)

T-cell receptor a-chain

Pat_8D2 (pat.pk0070.c10)

NKG 5 lymphocyte activation

Pat_8G1 (pat.pk0072.c9f)

CD 40 ligand

Pat_8G7 (pat.pk0072.e5f)

Oxysterol-binding prot

DT40subNB_3F7

No sequence data

DT40subNB_18A6

No_BLAST_hit

DT40subNB_4E1

Acetyl coenzyme A synthetase

Pat_10H10 (pat.pk0050.h11)

Unknown protein

Pat_14C12 (pat.pk0068.a5f)

GTP-binding protein YPT6

Pat_5C2 (pat.pk0048.h3f)

Paraoxonase;pon 2;serum

Pat_6A2 (pat.pk0053.f5)

INF-inducible membrane protein

Expressed through E18 (cluster 7)

 

DT40subNB_1A4

Hypothetical protein in ribosomal spacer

DT40subNB_1F8

Folate-binding protein

DT40subNB_4A4

Folate-binding protein

DT40subNB_6G2

ABC-transporter protein family

DT40subNB_4A2

Unknown protein

DT40subNB_9F2

Folate-binding protein

Expressed late (Clusters 2, 3 and 6)

 

DT40subNB_ 4H8

Gallus gallus mRNA for Ig J chain

DT40subNB_6G12

No sequence data

DT40subNB_6H6

Oncogene 2 (tre-2 locus)

DT40subNB_8H3

Gallus gallus mRNA for Ig J chain

Pat_11E10 (pat.pk0052.f12)

CBX 2

Pat_12D8 (pat.pk0075.f7)

Transc. factor

Pat_8A7 (pat.pk0068.c2f)

T-cell kinase, Lyn

Pat_8E10 (pat.pk0071.b6f)

Ig heavy chain

DKFZp426F123

Mtd/Bok

DT40subNB_12B3

Gallus gallus B cell linker protein BLNK

DT40subNB_12H10

No_BLAST_hit

DT40subNB_14B12

No sequence data

DT40subNB_14B5

No_BLAST_hit

DT40subNB_17A12

No_BLAST_hit

DT40subNB_18D12

TALL-1/TNF

DT40subNB_18E4

Caspase3

DT40subNB_6G7

No sequence data

DT40subNB_7H10

Gallus gallus B cell linker protein BLNK

Pat_11F4 (pat.pk0053.h1)

RGS/BL34

DT40subNB_11A6

Nuclear pore membrane glycoprotein POM210

DT40subNB_12E1

Rat intergral membrane glycoprotein GP210 precursor

DT40subNB_14E5

No_BLAST_hit

DT40subNB_14F10

No sequence data

DT40subNB_15H9

No_BLAST_hit

DT40subNB_18G3

SIAH-1

DT40subNB_18G7

PKC_alpha

DT40subNB_2H8

No sequence data

DT40subNB_5A12

No sequence data

DT40subNB_5D4

Rat mRNA for integral membrane glycoprotein gp210

DT40subNB_2F12

No sequence data

DT40subNB_8E10

Nuclear pore membrane glycoprotein POM210

Pat_10E3 (pat.pk.0043.h4)

Zinc-finger protein

Pat_10H1 (pat.pk0050.h11)

Cytohesin 2/ SEC7

Pat_11D3 (pat.pk0033.c6)

BARK 2

Pat_4D2 (pat.pk0038.g12f)

Platelet activating recpt homolog

Pat_5E1 (pat.pk0050.c9f)

Stromal cell protein;GOK

Data derived from SOM 3

´ 3 table in Fig. 1. Pat clones are from the T-cell library and show original clone names in parentheses to obtain sequence information at http://www.chickest.udel.edu/. Lists of genes in each cluster (as well as the raw data) can be found at http://parma.fhcrc.org/Neiman/SOM.html.