ID	Mel_RNA_all	RNA_all	Freq_Mel_RNA_all	Mel_DNA_all	DNA_all	Freq_Mel_DNA_all	one_minus_theta_all	q025_all	q975_all	Exon_ID_cat	ID_chromosome	ID_start	ID_end	Gene_Symbol	FBgn	RNA_Mel_exact_Rep1	RNA_Mel_exact_Rep2	RNA_Mel_exact_Rep3	RNA_Sim_exact_Rep1	RNA_Sim_exact_Rep2	RNA_Sim_exact_Rep3	DNA_Mel_exact_Rep1	DNA_Mel_exact_Rep2	DNA_Mel_exact_Rep3	DNA_Sim_exact_Rep1	DNA_Sim_exact_Rep2	DNA_Sim_exact_Rep3	RNA_Mel_all_Rep1	RNA_Mel_all_Rep2	RNA_Mel_all_Rep3	RNA_Sim_all_Rep1	RNA_Sim_all_Rep2	RNA_Sim_all_Rep3	DNA_Mel_all_Rep1	DNA_Mel_all_Rep2	DNA_Mel_all_Rep3	DNA_Sim_all_Rep1	DNA_Sim_all_Rep2	DNA_Sim_all_Rep3
F19620_SI	0	141	0	0	145	0	0.499	0.439	0.555	CG18000:43;CG18000:68;CG18000:7	X	20101515	20101691	sw	FBgn0003654	0	0	0	1	0	2	0	0	0	17	18	21	0	0	0	45	42	54	0	0	0	48	47	50
S101_SI	217	218	0.995	304	309	0.984	0.508	0.461	0.553	FBgn0058461:1	2RHet	2387787	2388177	CR40461	FBgn0058461	5	1	7	0	0	0	42	45	39	0	0	0	68	58	91	0	0	1	104	111	89	2	1	2
S13922_SI	292	293	0.997	266	268	0.993	0.503	0.464	0.546	FBgn0003656:8	X	7855472	7855747	sws	FBgn0003656	37	23	52	0	0	0	46	55	49	0	1	0	86	82	124	0	1	0	84	90	92	1	1	0
S14249_SI	190	198	0.96	548	607	0.903	0.53	0.48	0.581	FBgn0025864:10	X	8491445	8491747	Crag	FBgn0025864	20	9	20	2	0	1	123	128	141	17	20	18	56	70	64	2	3	3	180	173	195	18	21	20
S14597_SI	108	108	1	128	128	1	0.505	0.441	0.57	FBgn0085478:10	X	9232324	9232481	CG34449	FBgn0085478	11	5	8	0	0	0	20	22	31	0	0	0	35	31	42	0	0	0	45	32	51	0	0	0
S19244_SI	142	142	1	191	193	0.99	0.508	0.448	0.564	FBgn0261573:8	X	19417748	19417962	CoRest	FBgn0261573	16	9	35	0	0	0	51	49	65	0	2	0	32	46	64	0	0	0	61	56	74	0	2	0
S20047_SI	0	149	0	0	200	0	0.498	0.443	0.557	CG33502:2	X	21482113	21482369	CG33502	FBgn0053502	0	0	0	35	14	42	0	0	0	56	61	62	0	0	0	49	37	63	0	0	0	64	67	69
S24727_SI	233	233	1	120	129	0.93	0.537	0.487	0.587	FBgn0035917:3	3L	8620061	8620209	Zasp66	FBgn0035917	26	7	27	0	0	0	33	27	30	2	4	2	80	73	80	0	0	0	42	37	41	2	4	3
S33455_SI	5801	6189	0.937	142	150	0.947	0.498	0.481	0.521	FBgn0015039:2	2R	3018108	3018744	Cyp9b2	FBgn0015039	882	441	1045	80	22	72	21	40	24	2	2	0	1774	1808	2219	128	109	151	43	59	40	3	5	0
S33467_SI	5090	5120	0.994	805	813	0.99	0.503	0.492	0.513	CG1865:2	2R	3039763	3040649	Spn43Ab	FBgn0024293	908	362	970	3	1	1	207	267	223	1	0	1	1672	1436	1982	9	7	14	245	308	252	3	3	2
S33888_SI	298	298	1	124	124	1	0.503	0.463	0.547	CG2065:2	2R	3551538	3551801	CG2065	FBgn0033204	46	20	37	0	0	0	36	25	28	0	0	0	90	93	115	0	0	0	49	37	38	0	0	0
S35784_SI	101	101	1	160	170	0.941	0.532	0.463	0.597	FBgn0033502:2	2R	6154605	6154767	CG12910	FBgn0033502	8	6	26	0	0	0	36	30	27	3	0	5	21	33	47	0	0	0	63	48	49	3	1	6
S35881_SI	563	563	1	157	157	1	0.503	0.474	0.531	CG11765:2	2R	6306455	6306829	Prx2540-2	FBgn0033518	103	56	157	0	0	0	35	27	30	0	0	0	164	156	243	0	0	0	63	45	49	0	0	0
S35893_SI	614	614	1	145	145	1	0.504	0.476	0.533	FBgn0033521:3	2R	6314805	6315179	CG12896	FBgn0033521	14	8	27	0	0	0	12	7	12	0	0	0	182	186	246	0	0	0	61	42	42	0	0	0
S38401_SI	7700	8210	0.938	155	168	0.923	0.51	0.491	0.533	CG10130:3	2R	10506739	10507189	Sec61beta	FBgn0010638	1216	550	1631	129	64	183	36	39	28	2	2	3	2336	2159	3205	165	122	223	53	58	44	4	5	4
S44593_SI	289	293	0.986	375	391	0.959	0.515	0.472	0.554	FBgn0259210:7	2R	20304645	20304860	prom	FBgn0259210	19	20	37	0	0	0	84	61	66	3	3	5	68	118	103	2	1	1	132	116	127	6	4	6
S45881_SI	143	147	0.973	187	207	0.903	0.536	0.474	0.594	CG2902:14	3R	1335909	1336165	Nmdar1	FBgn0010399	15	10	22	0	0	1	40	38	37	6	3	3	39	49	55	0	1	3	66	62	59	8	5	7
S46120_SI	214	214	1	243	250	0.972	0.516	0.468	0.562	FBgn0086685:5	3R	1582510	1582803	sec8	FBgn0086685	54	20	50	0	0	0	51	80	64	3	2	2	72	57	85	0	0	0	66	96	81	3	2	2
S48815_SI	388	392	0.99	215	233	0.923	0.536	0.498	0.571	FBgn0037872:5	3R	7032628	7032860	nocturnin	FBgn0037872	29	15	40	0	0	1	23	37	33	2	8	3	104	125	159	0	2	2	65	74	76	5	10	3
S49272_SI	1525	1628	0.937	769	795	0.967	0.485	0.466	0.503	FBgn0037975:2	3R	7809208	7809746	CG3397	FBgn0037975	216	101	299	4	2	10	115	148	142	5	5	7	432	412	681	32	28	43	224	276	269	11	6	9
S52346_SI	151	161	0.938	193	201	0.96	0.491	0.438	0.543	FBgn0053547:24	3R	13733709	13733913	Rim	FBgn0053547	20	14	27	1	0	3	56	53	50	2	3	3	38	50	63	4	2	4	69	66	58	2	3	3
S53645_SI	246	246	1	208	217	0.959	0.523	0.472	0.572	FBgn0259222:11	3R	16573559	16573737	CG42322	FBgn0259222	37	17	42	0	0	0	53	53	56	4	4	1	69	86	91	0	0	0	71	68	69	4	4	1
S756_SI	164	165	0.994	136	144	0.944	0.528	0.472	0.582	FBgn0031319:15	2L	1181855	1182104	CG4896	FBgn0031319	20	12	26	0	0	0	27	12	24	0	3	3	45	50	69	0	1	0	53	35	48	2	3	3
S9606_SI	707	717	0.986	182	197	0.924	0.534	0.504	0.565	FBgn0032797:12	2L	19513044	19513251	CG10186	FBgn0032797	67	45	71	0	0	0	34	35	46	6	3	4	200	235	272	3	4	3	61	56	65	6	3	6