Diversity valleys (see text) shared between Malawi D. melanogaster and the D. simulans data of Begun et al. (2007)										
"Regions analyzed:  2L:3047000-15560000, 2R:6508000-19002000, 3L:3339000-14556000, 3R:12909000-26707000, X:3701000-18963000"										
										
chrosomal_arm	Melanogaster_start	Melanogaster_stop	Simulans_start	Simulans_stop	Melanogaster_Size	Simulans_Size	Shared_Start	Shared_Stop	Shared_Size	Genes_near_overlap
Chr2L	3808001	3809000	3807001	3811000	1000	4000	3808001	3809000	1000	l(2)k16918 (unknown)
Chr2L	4440001	4443000	4441001	4444000	3000	3000	4441001	4443000	2000	Sfp24F (seminal fluid protein)
Chr2L	5015001	5017000	5014001	5017000	2000	3000	5015001	5017000	2000	vkg (muscle devel.)
Chr2L	5031001	5050000	5029001	5039000	19000	10000	5031001	5039000	8000	Cg25c (collagen)
Chr2L	5279001	5280000	5279001	5280000	1000	1000	5279001	5280000	1000	Bub1 (mitotic spindle checkpoint)
Chr2L	5978001	6000000	5983001	5985000	22000	2000	5983001	5985000	2000	eIF-4a (reg. of alt. splicing; translation intiation; mitotic spindle; oogenesis...)
Chr2L	6632001	6666000	6637001	6639000	34000	2000	6637001	6639000	2000	CG31635 (?protein binding?)
Chr2L	6913001	6928000	6919001	6926000	15000	7000	6919001	6926000	7000	Hrb27c (regulation of splicing; axon guidanceÉ)
Chr2L	8209001	8212000	8210001	8211000	3000	1000	8210001	8211000	1000	Su(var)205 (chromatin binding/silencing)
Chr2L	8381001	8382000	8381001	8383000	1000	2000	8381001	8382000	1000	Aats-ala (?tRNA ligase?)
Chr2L	8401001	8405000	8403001	8405000	4000	2000	8403001	8405000	2000	emb (protein export; centriole replication)
Chr2L	9237001	9239000	9237001	9238000	2000	1000	9237001	9238000	1000	tai (steroid hormone receptor; transcription coactivator)
Chr2L	10765001	10766000	10765001	10766000	1000	1000	10765001	10766000	1000	UbcD2 (post-translational modification; metabolism)
Chr2L	10978001	10981000	10977001	11001000	3000	24000	10978001	10981000	3000	SCAR (actin binding; various developmental processes)
Chr2L	10997001	11000000	10977001	11001000	3000	24000	10997001	11000000	3000	aub (RNA interference; chromatin silencing; meiotic segregation) 
Chr2L	11116001	11123000	11117001	11118000	7000	1000	11117001	11118000	1000	CG6230 (>transmembrane ion transport?)
Chr2L	11246001	11277000	11252001	11253000	31000	1000	11252001	11253000	1000	ab (muscle and neuron development; lysosome organizationÉ)
Chr2L	11754001	11760000	11753001	11755000	6000	2000	11754001	11755000	1000	Sfp33A1 (seminal fluid protein)
Chr2L	11803001	11805000	11789001	11806000	2000	17000	11803001	11805000	2000	crol (transcription factor; cell cycle; cell adhesion)
Chr2L	11985001	12011000	11989001	11992000	26000	3000	11989001	11992000	3000	zuc (RNA interference); dgt2 (spindle organization); escl (protein binding)
Chr2L	11985001	12011000	12003001	12015000	26000	12000	12003001	12011000	8000	Rh5 (rhodopsin)
Chr2L	12535001	12544000	12538001	12539000	9000	1000	12538001	12539000	1000	"bun (regulation of:  anatomical structure size, cell proliferation, apoptosis)"
Chr2L	13188001	13203000	13196001	13201000	15000	5000	13196001	13201000	5000	CG16972 (unknown)
Chr2L	13364001	13387000	13363001	13387000	23000	24000	13364001	13387000	23000	"Nnp-1, loqs, others"
Chr2L	14725001	14727000	14712001	14728000	2000	16000	14725001	14727000	2000	CG12636 (unknown)
Chr2R	6691001	6696000	6650001	6717000	5000	67000	6691001	6696000	5000	wde (ovariole development)
Chr2R	6708001	6712000	6650001	6717000	4000	67000	6708001	6712000	4000	Lsm10 (mRNA processing); other genes
Chr2R	7729001	7750000	7740001	7745000	21000	5000	7740001	7745000	5000	Mtor (spindle assembly)
Chr2R	7853001	7877000	7853001	7864000	24000	11000	7853001	7864000	11000	CG8290 (transcription factor)
Chr2R	7975001	7978000	7975001	7979000	3000	4000	7975001	7978000	3000	"jeb (development of:  eye, muscle salivary gland)"
Chr2R	8025001	8081000	8027001	8029000	56000	2000	8027001	8029000	2000	CG8378 (transcription repressor)
Chr2R	8025001	8081000	8074001	8075000	56000	1000	8074001	8075000	1000	Cyp6g1 (insecticide resistance)
Chr2R	8190001	8192000	8191001	8238000	2000	47000	8191001	8192000	1000	SIP2 (unknown)
Chr2R	8219001	8236000	8191001	8238000	17000	47000	8219001	8236000	17000	split valley in both species - pi lowest near ana3 (mitotic spindle organization; centriole replication)
Chr2R	8316001	8322000	8315001	8321000	6000	6000	8316001	8321000	5000	CG8831 (nucleocytoplasmic transport)
Chr2R	8456001	8478000	8463001	8475000	22000	12000	8463001	8475000	12000	Sin3A (transcription repressor)
Chr2R	9019001	9036000	9021001	9024000	17000	3000	9021001	9024000	3000	Cap-G (mitotic spindle organization; mitotic segregation)
Chr2R	9108001	9113000	9066001	9118000	5000	52000	9108001	9113000	5000	Dp (transcription factor; oogenesis)
Chr2R	9859001	9881000	9861001	9865000	22000	4000	9861001	9865000	4000	CG6701 (?DNA repair?)
Chr2R	10035001	10069000	10036001	10039000	34000	3000	10036001	10039000	3000	Rcd1 (centriole replication)
Chr2R	10035001	10069000	10058001	10068000	34000	10000	10058001	10068000	10000	cg (wing imaginal disc)
Chr2R	10244001	10251000	10246001	10247000	7000	1000	10246001	10247000	1000	Arc1 (response to starvation)
Chr2R	10754001	10757000	10754001	10760000	3000	6000	10754001	10757000	3000	Pcf11 (mRNA cleavage)
Chr2R	11257001	11273000	11252001	11270000	16000	18000	11257001	11270000	13000	Pms2 (mismatched DNA binding); dup (antimicrobial response; eggshell formation; mitotic chromatid separationÉ)
Chr2R	11555001	11586000	11571001	11572000	31000	1000	11571001	11572000	1000	Ranbp11 (RanGTP binding)
Chr2R	12841001	12843000	12842001	12844000	2000	2000	12842001	12843000	1000	CG34415 (?transcription regulation?)
Chr2R	12938001	12961000	12940001	12955000	23000	15000	12940001	12955000	15000	"in both species, deepest valley near tef (male meiosis chromosome segregation) and fat-spondin (serine-type endopeptidase inhibitor)"
Chr2R	13316001	13323000	13319001	13320000	7000	1000	13319001	13320000	1000	Lhr (hybrid lethality)
Chr2R	13435001	13440000	13434001	13479000	5000	45000	13435001	13440000	5000	MESR4 (bristles)
Chr2R	13461001	13474000	13434001	13479000	13000	45000	13461001	13474000	13000	Dcr-2 (RNA interference)
Chr2R	14032001	14045000	14040001	14045000	13000	5000	14040001	14045000	5000	lolal (chromatin silencing)
Chr2R	14066001	14069000	14067001	14069000	3000	2000	14067001	14069000	2000	nopo (cell cycle); CG5726 (unknown)
Chr2R	14242001	14243000	14242001	14245000	1000	3000	14242001	14243000	1000	(large intergenic region; near repeats)
Chr2R	14299001	14300000	14299001	14308000	1000	9000	14299001	14300000	1000	Dp1 (heterochromatin formation; chromosome segregation; positive regulation of translation); imd (immune response)
Chr2R	14725001	14734000	14723001	14728000	9000	5000	14725001	14728000	3000	CG15099 (unknown)
Chr2R	14860001	14866000	14860001	14866000	6000	6000	14860001	14866000	6000	Topors (ubiquitin-protein ligase)
Chr2R	15147001	15148000	15146001	15148000	1000	2000	15147001	15148000	1000	CG7229 (unknown)
Chr2R	15341001	15364000	15354001	15362000	23000	8000	15354001	15362000	8000	par-1 (oogenesis; antimicrobial response; cell shapeÉ)
Chr2R	15468001	15472000	15468001	15469000	4000	1000	15468001	15469000	1000	sm (feeding behavior; axon guidance; bristles)
Chr2R	15653001	15655000	15653001	15655000	2000	2000	15653001	15655000	2000	between Or56a (?smell?) and cluster of rRNA genes [missing data]
Chr2R	15832001	15833000	15822001	15860000	1000	38000	15832001	15833000	1000	CG30447 (unknown)
Chr2R	16204001	16219000	16208001	16212000	15000	4000	16208001	16212000	4000	CG8920 (?nucleic acid binding?)
Chr2R	16505001	16507000	16505001	16507000	2000	2000	16505001	16507000	2000	CG9945 (unknown)
Chr2R	16551001	16557000	16551001	16558000	6000	7000	16551001	16557000	6000	exu (embryonic devel.); Fem-1 (unknown)
Chr2R	16886001	16887000	16883001	16890000	1000	7000	16886001	16887000	1000	CG10543 (?zinc ion binding?)
Chr2R	17070001	17072000	17071001	17072000	2000	1000	17071001	17072000	1000	tud (pole cell devel.)
Chr2R	17601001	17603000	17601001	17602000	2000	1000	17601001	17602000	1000	HmgD (chromatin organization)
Chr2R	17744001	17755000	17752001	17753000	11000	1000	17752001	17753000	1000	cmr (transcription activator; spermatogenesis)
Chr2R	18094001	18098000	18096001	18099000	4000	3000	18096001	18098000	2000	CG3264 (?alkaline phosphatase; metabolism?)
Chr2R	18480001	18493000	18476001	18493000	13000	17000	18480001	18493000	13000	CG4294 (?magnesium binding; phosphate metabolism?)
Chr2R	18801001	18812000	18803001	18827000	11000	24000	18803001	18812000	9000	Nup214 (protein import to nucleus)
Chr3L	5760001	5768000	5761001	5769000	8000	8000	5761001	5768000	7000	Usp36 (regulation of apoptosis and growth; cuticle chitin; gonad development)
Chr3L	6192001	6199000	6189001	6194000	7000	5000	6192001	6194000	2000	CG8219 (protein import; nuclear pore); LanA (male aggression; female meiotic segregationÉ)
Chr3L	7347001	7363000	7331001	7376000	16000	45000	7347001	7363000	16000	pst (learning); CTCF (transcription factor); sec63 (?protein folding?)
Chr3L	8100001	8115000	8108001	8127000	15000	19000	8108001	8115000	7000	Arp66B (actin binding and reorganization; nurse cell to oocyte; phagocytosisÉ)
Chr3L	8188001	8189000	8155001	8200000	1000	45000	8188001	8189000	1000	MED24 (dendrite and muscle devel.)
Chr3L	8292001	8296000	8278001	8304000	4000	26000	8292001	8296000	4000	CG13671 (unknown)
Chr3L	8430001	8433000	8431001	8434000	3000	3000	8431001	8433000	2000	Unr (dosage compensation)
Chr3L	9095001	9097000	9095001	9097000	2000	2000	9095001	9097000	2000	bol (male meiosis; spermatogenesis; regulation of translation)
Chr3L	9454001	9457000	9445001	9466000	3000	21000	9454001	9457000	3000	CG32043 (unknown)
Chr3L	10584001	10586000	10583001	10586000	2000	3000	10584001	10586000	2000	CG32062 (?nervous system devel.?)
Chr3L	11970001	11993000	11952001	11973000	23000	21000	11970001	11973000	3000	CG6947 (?chitin metabolism?)
Chr3L	11970001	11993000	11987001	12004000	23000	17000	11987001	11993000	6000	GRIP (mitotic spindle organization); Pop2 (transcription factor)
Chr3L	13412001	13415000	13411001	13414000	3000	3000	13412001	13414000	2000	CG32121 (?protein and zinc ion binding?)
Chr3L	14397001	14398000	14396001	14434000	1000	38000	14397001	14398000	1000	stonewall (chromatin organization; germ-line stem cell maintenance)
Chr3R	15798001	15809000	15799001	15801000	11000	2000	15799001	15801000	2000	CG31213 (?transmembrane transport?)
Chr3R	15938001	15939000	15932001	15943000	1000	11000	15938001	15939000	1000	[missing data]
Chr3R	16549001	16577000	16574001	16582000	28000	8000	16574001	16577000	3000	CG42322 (unknown)
Chr3R	16623001	16632000	16623001	16628000	9000	5000	16623001	16628000	5000	CG17838 (mRNA splicing)
Chr3R	18312001	18319000	18308001	18316000	7000	8000	18312001	18316000	4000	T-cp1 (mitotic spindle organization; phagocytosis); other genes
Chr3R	19513001	19520000	19506001	19526000	7000	20000	19513001	19520000	7000	CG10254 (?post-translational modification; regulation of protein metabolism?)
Chr3R	19633001	19638000	19634001	19642000	5000	8000	19634001	19638000	4000	eIF4G2 (male meiosis; spermatid differentiation)
Chr3R	20130001	20151000	20140001	20142000	21000	2000	20140001	20142000	2000	[signals have different centers]
Chr3R	21072001	21084000	21075001	21082000	12000	7000	21075001	21082000	7000	Nup358 (protein import; nuclear pore)
Chr3R	23093001	23111000	23092001	23105000	18000	13000	23093001	23105000	12000	l(3)mbt (regulation of cell cycle; transcription repression; dendrite and muscle devel.)
Chr3R	24144001	24149000	24144001	24146000	5000	2000	24144001	24146000	2000	larp (spindle assembly in male meiosis; mitotic chromosome condensation; centrosome separationÉ)
Chr3R	24301001	24324000	24315001	24316000	23000	1000	24315001	24316000	1000	Dhc98D (?microtubule motor?)
Chr3R	24850001	24857000	24851001	24854000	7000	3000	24851001	24854000	3000	CG1951 (?protein phosphorylation?); eIF4E6 (?RNA cap binding; translation initiation?)
ChrX	3827001	3829000	3816001	3829000	2000	13000	3827001	3829000	2000	CG2938 (unknown)
ChrX	3841001	3848000	3844001	3848000	7000	4000	3844001	3848000	4000	Vap-33-1 (nervous system devel.)
ChrX	4160001	4174000	4161001	4170000	14000	9000	4161001	4170000	9000	CG15572 (unknown)
ChrX	6650001	6661000	6653001	6661000	11000	8000	6653001	6661000	8000	CG14438 (?zinc ion binding?)
ChrX	7784001	7789000	7781001	7787000	5000	6000	7784001	7787000	3000	Nek2 (regulation of mitosis)
ChrX	7812001	7850000	7818001	7836000	38000	18000	7818001	7836000	18000	CG10777 (?RNA helicase?); CG10778 (phagocytosis)
ChrX	9150001	9164000	9149001	9151000	14000	2000	9150001	9151000	1000	ric8a (cell polarity; mitotic spindle localizationÉ)
ChrX	9150001	9164000	9163001	9172000	14000	9000	9163001	9164000	1000	CG17440 (?protein and zinc ion binding?)
ChrX	9574001	9579000	9571001	9575000	5000	4000	9574001	9575000	1000	nej (chromatin organization; development; regulation of metabolismÉ)
ChrX	10357001	10365000	10355001	10366000	8000	11000	10357001	10365000	8000	nocte (circadian clock)
ChrX	11758001	11760000	11756001	11761000	2000	5000	11758001	11760000	2000	CG2025 (?proteolysis?)
ChrX	15215001	15244000	15237001	15240000	29000	3000	15237001	15240000	3000	CG9123 (unknown); CG12607 (unknown); CG6227 (regulation of alt. splicing)
ChrX	15362001	15370000	15363001	15366000	8000	3000	15363001	15366000	3000	Grip128 (male and female meiosis; mitotic spindle organization)
ChrX	15473001	15476000	15463001	15481000	3000	18000	15473001	15476000	3000	CG9215 (?zinc ion and nucleic acid binding?); CG8097 (?arginyl-tRNA aminoacylation?))
ChrX	15607001	15608000	15591001	15635000	1000	44000	15607001	15608000	1000	CG8184 (dsRNA transport)
ChrX	15720001	15733000	15719001	15724000	13000	5000	15720001	15724000	4000	Chc (sperm individualization; dsRNA transport; trachael system)
ChrX	16491001	16502000	16494001	16496000	11000	2000	16494001	16496000	2000	Nup153 (nuclear pore)
ChrX	17136001	17138000	17133001	17144000	2000	11000	17136001	17138000	2000	CG8915 (?helicase?)