#NEXUS Begin DATA; Dimensions ntax=15 nchar=786; Format datatype=NUCLEOTIDE interleave gap=-; Matrix [ 1 11 21 31 41 51 ] [ | | | | | | ] Echinops_telfairi GGACATCAAGCAATGGGGACCTGGATTTTGTTTGCCTGCCTCTTGGGAGCAGCCTTTGCG Chrysochloris_asiatica AGCCATCAAGCAATGGGGACCTGGATTTTGTTTGCCTGCCTCCTGGGAGCAGCCTTTGCA Elephantulus_edwardii GGTCATCAAGCAATGGGGACCTGGATTTTGTTTGCCTGCCTCCTCGGAGCAGCCTTTGCT Trichechus_manatus GGCCATCAAACAATGGGGACCTGGATTTTGTTTGCCTGCCTCCTGGGAGCAGCCTTCGCT Loxodonta_africana GGCCAT-----AATGGGGACCTGGATTTTGTTTGCCTGCCTCCTGGGAGCAGCCTTCGCT Procavia_capensis GGCCTTCAAGCAATGGGGACCTGGATTTTGTTTGCCTGCCTCCTGGGAGCAGCTTTTGCT Orycteropus_afer GGCCACCAAGCAATGGGGACCTGGATTTTGTTTGCCTGCCTGCTGGGAGCAGCCTTTTCT Dasypus_novencinctus GACCATCAAGAAATGGGGAACTGGATTTTGTTTGCCTGCCTCCTGGGAGCAGCCTTTGCT Choloepus_hoffmanni GGCCATCAAGAAACGGGGACCTGGATTTTGTCTGCCTGCCTCCT-----------TCACC Homo_sapiens_Exon2 AACCATCAAGAAATGGGGACCTGGATTTTATTTGCCTGCCTCCTGGGAGCAGCTTTTGCC Homo_sapiens_Exon3 ------------------------------------------------------------ Homo_sapiens_Exon4 ------------------------------------------------------------ Homo_sapiens_Exon5 ------------------------------------------------------------ Homo_sapiens_Exon6 ------------------------------------------------------------ Homo_sapiens_Exon7partial ------------------------------------------------------------ [ 61 71 81 91 101 111 ] [ | | | | | | ] Echinops_telfairi ATGCCACTACCACCTCATCCTGGGCACCCTGGTTATATCAACTTCAGCTATGAGAAGTCA Chrysochloris_asiatica ATGCCACTACCACCTCATCCTGGGCACCCTGGTTATATCAACTTCAGCTATGAGAAGTCA Elephantulus_edwardii ATGCCACTCCCGCCTCATCCTGGGCACCCTGGTTATATCAACTTCAGCTATGAGAAGCCA Trichechus_manatus ATGCCACTACCGCCTCATCCTGGGCACCCTGCTTATATCAACTTCAGCTATGAGAAGTCA Loxodonta_africana ATGCCACTACCGCCTCATCCTGGGCACCCTGGTTATATCAACTTCAGCTATGAGAAGTCA Procavia_capensis ATGCCACTACCGCCTCATCCTGGGCACCCTGGTTATATCAACTTCAGCTATGAGAAGTCA Orycteropus_afer ATGCCACTACCACATCATCCTGGACACCCTGGTTATATCAACTTCAGCTATGAGAAGTCA Dasypus_novencinctus ATGCCACTACCACCTCATCCAGGGCACCCTGGTTATATCAACTTCAGCTATGAGACCTCA Choloepus_hoffmanni ATGCCACTACCGCTTCATCCAGGGCACCCTGGTTATATTAACTTCAGTTATGAGATCTCA Homo_sapiens_Exon2 ATGCCT------------------------------------------------------ Homo_sapiens_Exon3 ------CTACCACCTCATCCTGGGCACCCTGGTTATATCAACTTCAGCTATGAG------ Homo_sapiens_Exon4 ------------------------------------------------------AACTCA Homo_sapiens_Exon5 ------------------------------------------------------------ Homo_sapiens_Exon6 ------------------------------------------------------------ Homo_sapiens_Exon7partial ------------------------------------------------------------ [ 121 131 141 151 161 171 ] [ | | | | | | ] Echinops_telfairi CAGCTTCAGGCTAACC-CTAATAG-GCTGGGGGTGGGGGAGTGCTCACCCCCCTGAAGTG Chrysochloris_asiatica CACTTACAGG----TTACCAATAATAACAGGGCTGTGGGAGTGCTCACCCCTTTGAAGTG Elephantulus_edwardii CAATTTCAGACTACCTACCACTCCTTCCAGGAGTGTTGGAGTGCTCACCCCTTTGAAGTG Trichechus_manatus CCATTTCAGG----CTACCAATATTGA-----CTGCGGGAGTGCTCACCCCTCTGAAGTG Loxodonta_africana CAATTTCAGG----CTACCAGTATTGACAGGACTGCAGGAGTGCTCACCCCTTTGAAGTG Procavia_capensis CAATTTCAGG----CTACCAATACTGACAGGACTGCAGGAGTGCTCACCCCCATAAAGTG Orycteropus_afer CACTTTCAGG----CTGCCAATATTGACAGGCTTGCGTGAGTGCTCACCCCTTTGAAGTG Dasypus_novencinctus CATTTTCAGG----CTATCACAATTGACAAGACTGCATTAGTGCTTAGCCCTTTGAAGTG Choloepus_hoffmanni TGATTTCCAG----CTATTGCTATCGACAAGACTGCATTAGTGCTTACCACTCTGAAGTG Homo_sapiens_Exon2 ------------------------------------------------------------ Homo_sapiens_Exon3 ------------------------------------------------------------ Homo_sapiens_Exon4 CATTCTCAGG----CTATCAATGTTGACAGGACTGCATTA-------------------- Homo_sapiens_Exon5 ----------------------------------------GTGCTTACCCCTTTGAAGTG Homo_sapiens_Exon6 ------------------------------------------------------------ Homo_sapiens_Exon7partial ------------------------------------------------------------ [ 181 191 201 211 221 231 ] [ | | | | | | ] Echinops_telfairi GTACCAGAACATGCTAAGGCAGCCGTACCCTTCCTATGGTTACGAGCCCATGGGTGGATG Chrysochloris_asiatica GTACCAGAACATGATAAGGCAGCCGTACCCTTCCTATGGTTACGAGCCCATGGGTGGATG Elephantulus_edwardii GTACCAGAACATTATAAGGCAGCCGTACCCTTCCTATGGTTACGAGCCCATGGGTGGATG Trichechus_manatus GTACCAGAACATGATAAGGCAGCCGTACCCTTCCTATGGTTACGAGCCCATGGGTGGATG Loxodonta_africana GTACCAGAACATGATAAGGCAGCCGTACCCTTCCTATGGTTACGAGCCCATGGGTGGATG Procavia_capensis GTACCAGAACATGATAAGG---CCGTACCCTTCCTATGGTTACGAGCCCATGAGTGGATG Orycteropus_afer GTACCCGAACATGATAAGGCAGCGATACCCTTCCTATGGTTACGAGCCCACGAGTGGATG Dasypus_novencinctus GTATCAGAGC---ATAAGGCAGCCGTACCCTTCCTACGGTTATGAACCCATGAGCGGATG Choloepus_hoffmanni TTACCAGAAC---ATATGGCAGCTGTACCCTTCCTATGGTTACAAACCCATGGGGAGATG Homo_sapiens_Exon2 ------------------------------------------------------------ Homo_sapiens_Exon3 ------------------------------------------------------------ Homo_sapiens_Exon4 ------------------------------------------------------------ Homo_sapiens_Exon5 GTACCAGAGC---ATAAGGCCACCG----------------------------------- Homo_sapiens_Exon6 -------------------------TACCCTTCCTATGGTTACGAGCCCATGGGTGGATG Homo_sapiens_Exon7partial ------------------------------------------------------------ [ 241 251 261 271 281 291 ] [ | | | | | | ] Echinops_telfairi GCTGCACCACCAAATCATCCCTGTGCTGTCCCAGCAGCTTCCCCCGAGCCACACCCTGCA Chrysochloris_asiatica GCTGCACCACCAAATCATCCCCGTGCTGTCCCAGCAGCATCCCCCGAGCCACACCATGCA Elephantulus_edwardii GCTGCGCCACCAAATCGTCCCTGTGCTGTCCCAACAGCATCCCCCGAGCCACACCCTGCA Trichechus_manatus GCTGCACCACCAAATCATCCCTGTGCTGTCCCAGCAGCATCCCCAGAGCCACACCCTGCA Loxodonta_africana GCTGCACCACCAAATCATCCCCGTGCTGTCCCAGCAGCATCCCCAGAGCCACACCCTGCA Procavia_capensis GCTGCACCACCAAATCATCCCTGTGCTGTCCCAGCAGCATCCCCAGAGCCACACCCTGCA Orycteropus_afer ACTGCATCACCAAATCGTCCCTGTG------CAGCAGCATCCCCTGAGCCACACCCTGTA Dasypus_novencinctus GCTGCACCAACAAATCATCCCAGTGCTATCCCAGCAGCACCCCCCAAGCCACGCCCTGCA Choloepus_hoffmanni GCAGCACCACCAAATCATCCCCATGCTTTCCCAGCAGCACCCCCCAAACCATGCCCTGAA Homo_sapiens_Exon2 ------------------------------------------------------------ Homo_sapiens_Exon3 ------------------------------------------------------------ Homo_sapiens_Exon4 ------------------------------------------------------------ Homo_sapiens_Exon5 ------------------------------------------------------------ Homo_sapiens_Exon6 GCTGCACCACCAAATCATCCCCGTGCTGTCCCAACAGCACCCCCCGACTCACACCCTGCA Homo_sapiens_Exon7partial ------------------------------------------------------------ [ 301 311 321 331 341 351 ] [ | | | | | | ] Echinops_telfairi GCCTCATCACCACATCCCCATGGTGCCCGCTCAGCAG---CCCGTGGCCCCCCAGCAGCC Chrysochloris_asiatica GCCTCATCACCACATCCCCATGGTGCCCGCTCAGCAG---CCCGTGGCCCCTCAGCAGCC Elephantulus_edwardii GCCTCATCACCACATCCCCATGGTGCCCGCTCAGCAGCAGCCCGTGGTCCCCCAGCAGCC Trichechus_manatus GCCTCATCACCACATCCCCATGGTGCCCGCTCAGCAG---CCCATGGTCCCCCAGCAGCC Loxodonta_africana GCCTCATCACCACTTCCCCATGGTGGCCGCTCAGCAG---CCCGTGGTCCCTCAGCAGCC Procavia_capensis GCCTCATCACCACATCCCCATGGTGCCCGCTCAGCAA---CCCGTGGTCCCCCAGCAGCC Orycteropus_afer GCCTCATCACCACATCCCCATGGTGCCTCCTCAGCAG---CCCATGGTCCCCCAGCAGCC Dasypus_novencinctus GCCTCATCAACACATCCCCATGATGCCAGCTCAGGAG---CCCATGGTCCCCCAGCAGCC Choloepus_hoffmanni GCCTTATCCTCATGTCCCCATGGTGCCAGGTCAGCAG---CCCATGGTCCCCCAGTAGCC Homo_sapiens_Exon2 ------------------------------------------------------------ Homo_sapiens_Exon3 ------------------------------------------------------------ Homo_sapiens_Exon4 ------------------------------------------------------------ Homo_sapiens_Exon5 ------------------------------------------------------------ Homo_sapiens_Exon6 GCCTCATCACCACATCCCAGTGGTGCCAGCTCAGCAG---CCCGTGATCCCCCAGCAACC Homo_sapiens_Exon7partial ------------------------------------------------------------ [ 361 371 381 391 401 411 ] [ | | | | | | ] Echinops_telfairi AATGATGCCAGTTCCCGGCCAACACTCCATGACTCCAACCCAACACCACCAGCCACACCT Chrysochloris_asiatica AATGATGCCAGTTCCCGGCCAACACTCCATGACTCCAACCCAACACCACCAGGCACACCT Elephantulus_edwardii AATGATGCCAGTTCCTGGCCAACACTCCATGACTCCAACCCAACACCACCAGCCACACCT Trichechus_manatus AATGATGCCAGTTCCCGGCCAACACTCCATGACTCCAACCCAACGCCACCAGCCACACCT Loxodonta_africana AATGATGCCACTTCCCGGCCAACACTCCATGACTCCAACCCAACACCATCAGCCAAACCT Procavia_capensis ACTGATGCCAGTTCCCGGGCAACACTCCATGACTCCAACCCAACACCACCAGCCAAACCT Orycteropus_afer AATGATGCCAGTTCCCGGCCGACACTCCATGACCCCAACGCAACACCACCAGCCACATCT Dasypus_novencinctus AATGATGCCAGTTCCTGGCCAGCACTCCATGACTCCAAGCCTGCACCACCAGCCAAACCT Choloepus_hoffmanni AATGATGCCAGTTCCTGGCCAGCACTCCAGGACCGAATTCCACCACAGCCACCAAAACCT Homo_sapiens_Exon2 ------------------------------------------------------------ Homo_sapiens_Exon3 ------------------------------------------------------------ Homo_sapiens_Exon4 ------------------------------------------------------------ Homo_sapiens_Exon5 ------------------------------------------------------------ Homo_sapiens_Exon6 AATGATGCCCGTTCCTGGCCAACACTCCATGACTCCAATCCAACACCACCAGCCAAACCT Homo_sapiens_Exon7partial ------------------------------------------------------------ [ 421 431 441 451 461 471 ] [ | | | | | | ] Echinops_telfairi CCCTCCGCCCGTCCAGCAGCCCTACCAGCCCCAGCCCGTGCAGCCGCAGCCTCACCAG-- Chrysochloris_asiatica CCCGCCC---GTCCAGCAGCCCTTCCAGCCC------ATCCAG---------CACCAGCC Elephantulus_edwardii CCCTCCGCCCGTCCAGCAGCCCTACCAGCCCCAGTCCGTCCAGCCGCAGCCTCACCAGCC Trichechus_manatus CCCTCCGTCCATCCAGCAACCCTACCAACCCCAGCCAGTCCAGCCGCAGCCTCAC----- Loxodonta_africana CCCTCCACCCATCCAGCAACCCTACCAGCCCCAGCCAGTCCAGCCGCAGCCTCAG----- Procavia_capensis CCCTCCGCCCATCCAGCAACCCTACCAGCCCCAGCCCGTCCAGCCGCAGCCTCAC----- Orycteropus_afer CCCTCCACCTGTCCAGCAGCCCTTCCAGCCCCAGCCCGTCCAGCCGCAG----------- Dasypus_novencinctus CCCTCTGCCTGTCCAGCAGCCCTTCCAGCCCCAGCCCGCCCAGCCCCAGCCTCAC----- Choloepus_hoffmanni CTCTCCATCCGCCCAGCAGCCCTCCCAGCCGCAGTCTCTCCAGCCCGGC----------- Homo_sapiens_Exon2 ------------------------------------------------------------ Homo_sapiens_Exon3 ------------------------------------------------------------ Homo_sapiens_Exon4 ------------------------------------------------------------ Homo_sapiens_Exon5 ------------------------------------------------------------ Homo_sapiens_Exon6 CCCTCCGCCCGCCCAGCAGCCCTACCAGCCCCAGCCTGTTCAGCCACAGCCTCACCAG-- Homo_sapiens_Exon7partial ------------------------------------------------------------ [ 481 491 501 511 521 531 ] [ | | | | | | ] Echinops_telfairi -------------------------CCCATGCAGCCCCAGCCACCCGTGCACCCCATGCA Chrysochloris_asiatica TGTCCAGCAG---CAACCTCACCAGCCCATGCATCCCCAGCCACCCATGCATCCCATGCA Elephantulus_edwardii CATGCAGCCAATGCAGCCCATGCATCCCATGCATCCCCAGCAGTCCATGCACCCCATGCA Trichechus_manatus ----------------------CAGCCCATGCAGCCCCAGCCACCCATGCACCCCATCCA Loxodonta_africana ----------------------CAGCCCATGCAGCCACAGCCACCTGTGCACCCCATCCA Procavia_capensis ----------------------CAGCCCCTGCAGCCCCAGCCACCCATGCACCCCATCCA Orycteropus_afer ----------------------------------------CCACCCGTGCACCCCATCCA Dasypus_novencinctus ----------------------CAGCCCATCCAGCCCCAGCCACCCATGCAGCCCATCCA Choloepus_hoffmanni ----CAGCCCCAGTCACCCATGCACCCCATCCAGTCCCTGCCACCACAATG--------- Homo_sapiens_Exon2 ------------------------------------------------------------ Homo_sapiens_Exon3 ------------------------------------------------------------ Homo_sapiens_Exon4 ------------------------------------------------------------ Homo_sapiens_Exon5 ------------------------------------------------------------ Homo_sapiens_Exon6 -------------------------CCCATGCAGCCCCAGCCACCTGTGCACCCCATGCA Homo_sapiens_Exon7partial ------------------------------------------------------------ [ 541 551 561 571 581 591 ] [ | | | | | | ] Echinops_telfairi GCCCATGCCGCCACAGCCACCTATGCCTCCGATGTTCCCCATGCAGCCTCTGCCCCCCAT Chrysochloris_asiatica GCCCCTGCCCCCACAGCCACCTCTGTCTCCGATGTTCCCCATGCAGCCTCTGCCCCCCAT Elephantulus_edwardii GCCCTTGCCGCCACAGCCACCTCTGCCTCCGATGTTCCCCATGCAGCCTCTGCCCCCCAT Trichechus_manatus TCCCCTGCCGCCACAGCCACCTCTGCCTCCGATGTTCCCCATGCAGCCTCTGCCCCCCAT Loxodonta_africana GCCCTTGCCACCACAGCCACCTCTGCCTCCGATGTTCCCCATGCAGCCTCTGCCCCCCAT Procavia_capensis ACCCCTGCCGCCACAGCCACCTCTGCCTCCGATATTCCCCATGCAGCCTCTGCCCCCCAT Orycteropus_afer GCCCCTGCTGCCACAGCCACCTCTGCCTCTGATGTTCCCCATGAAGCCTCTGCCCCCCTT Dasypus_novencinctus G---------------CCTCCTCTGCCTCCGGTGTTCGCCATGCAGCCCCTGGCCCCCAT Choloepus_hoffmanni ---------------GCCACCTCTGCCTCTGATGTTTCCCATGAAACCCCTGTCCCCCA- Homo_sapiens_Exon2 ------------------------------------------------------------ Homo_sapiens_Exon3 ------------------------------------------------------------ Homo_sapiens_Exon4 ------------------------------------------------------------ Homo_sapiens_Exon5 ------------------------------------------------------------ Homo_sapiens_Exon6 GCCCCTGCCGCCACAGCCACCTCTGCCTCCGATGTTCCCCATGCAGCCCCTGCCTCCCAT Homo_sapiens_Exon7partial ------------------------------------------------------------ [ 601 611 621 631 641 651 ] [ | | | | | | ] Echinops_telfairi GCTCACC---GATCTGCCTATGGAAGCTTGGCCGGCAACAGACAAGACCAAGCGGGAGGA Chrysochloris_asiatica GCTTCCT---GATCTGCCCCTGGAAGCTTGGTCAGCAACGGACAAGACCAAGAGGGAAGA Elephantulus_edwardii GCTCCAT---GATCTGCCTCTGGAAGCGTGGTCAGCAACTGACAAGACCAAGCGGGAAGA Trichechus_manatus GCTTCCT---GACCTGCCTCTGGAAGCTTGGCCAGCAACAGACAAGGCCAAACGGGAAGA Loxodonta_africana GCTCCAT---GACCTGCCCCTGGAAGCTTGGCCAGCAACCGACAAGACCAAGCGGGAAGA Procavia_capensis GCTCCCT---GACCTGCCTCTGGAAGCCTGGCCAGCAACTGACAAGACCAAGCGGGAAGA Orycteropus_afer GCTTCCT---GATCTGCCTCTGGAAGCTTGGCCAGCAACGGACAAGACCAAGCGGGAAGA Dasypus_novencinctus GCTTCCTGGTGATCTACCTCTGGAGGCTTGGCCAGCGACCGACAAGACCAAACGGGAGGA Choloepus_hoffmanni GCTTCCT---GATCTGCCTCTGGAAGCTTGGCCAGTGACCAACAAGGCTGAGCGGGAGGA Homo_sapiens_Exon2 ------------------------------------------------------------ Homo_sapiens_Exon3 ------------------------------------------------------------ Homo_sapiens_Exon4 ------------------------------------------------------------ Homo_sapiens_Exon5 ------------------------------------------------------------ Homo_sapiens_Exon6 GCTTCCT---GATCTGACTCTGGAAGCTTGGCCATCAACAGACAAGACCAAGCGGGAGGA Homo_sapiens_Exon7partial ------------------------------------------------------------ [ 661 671 681 691 701 711 ] [ | | | | | | ] Echinops_telfairi AGTGGATTAAACCAATGGATGAGGAGCGAAGGACTGAAGCTGCCATTTCAGTTGCTTCCA Chrysochloris_asiatica AGTGGATTAAAGGAACAGACAAGGACGGAAGAACTGAAC--------------GCTTTCA Elephantulus_edwardii AATAGATTAAACGACCAGACACTGACAGAA---CTGAACCTGATA-------------CC Trichechus_manatus AGTGGATTAACCGATCAGAC-----GAAGAGAACTGAACTTGATATTTCAGTAGCTTTCA Loxodonta_africana AGTGGATTAACCGATCGGACAATGAGAGAAGAACTGAACTTGATATTTCAGTTACTTTCA Procavia_capensis AGTGGATTAAACGATCAGACAATGAC---AGGACTGGACTCGGTATCTCAGTTGCTTTCA Orycteropus_afer AGTGGATTAAATGATCAGGAAAGGAGAGAAGAACTGAACTTGCCATTTAAGTTGCTTTCA Dasypus_novencinctus AGTG--------------TAAATGAGAGAAGA-CTAAGCTAGATATTTCAGTTGCTTTCA Choloepus_hoffmanni AGTAGATTAAAAGATCAGTAAATGAGAGAAG---TAAGCTAGATATTTCAGTTGCTTTCA Homo_sapiens_Exon2 ------------------------------------------------------------ Homo_sapiens_Exon3 ------------------------------------------------------------ Homo_sapiens_Exon4 ------------------------------------------------------------ Homo_sapiens_Exon5 ------------------------------------------------------------ Homo_sapiens_Exon6 AGTG-------------------------------------------------------- Homo_sapiens_Exon7partial ----GATTAAAAGATCAGAAGATGAGAGGGGAA-TGAA-----TACTTCAGATGCTTTCA [ 721 731 741 751 761 771 ] [ | | | | | | ] Echinops_telfairi GCAATGTCCCAAGAGCACGGTGATGGG--TGTCGACAATCACCCTCTGT-AGTGAGTGCT Chrysochloris_asiatica GGAATGCCACAGGAACATAGTTGACTG-CTGTCTACAATCACTTTCCTT-AGTAAATGCT Elephantulus_edwardii TGAACGACCCAAGAGCAAAGTGATTTG--TGTCTACAATCAACTTTCCCTATGAAATGCT Trichechus_manatus GGAACCACGCAAGAGCACAGTGATTTG--TGTCTACAAACACTTTCCTT-AGTAAATGCT Loxodonta_africana GGAATGACACAAGTGCACAGTGATTTG--TGTCTAAAATCATTTTCCTT-AGTAAACGCT Procavia_capensis GGAGTGACACAAAAAGCATGGTGGTTTTCTGTCTACAATCACTTTCCTT-AGTAAATGCT Orycteropus_afer GGAATGACACAGAG-CAAAGTGATTTG--TGTCCACA-TCACTTTCCCTTAGTAAAGGCT Dasypus_novencinctus GGAAAGACACAAGAACACAGTGATTTG--TGCCAACGACTACTTTACTT-AGTAAATTCT Choloepus_hoffmanni GGAATGACACAAGAACACAATGATTTG--TGCCTAAA-TCA-TTTGCTT-AGTAAATTCT Homo_sapiens_Exon2 ------------------------------------------------------------ Homo_sapiens_Exon3 ------------------------------------------------------------ Homo_sapiens_Exon4 ------------------------------------------------------------ Homo_sapiens_Exon5 ------------------------------------------------------------ Homo_sapiens_Exon6 ------------------------------------------------------------ Homo_sapiens_Exon7partial GGAGTGACACAAGAACACAATGATTTT--TGCTTATAATCACTTTACTT-AGCAAATTCT [ 781 ] [ | ] Echinops_telfairi GTAACT Chrysochloris_asiatica GTAACA Elephantulus_edwardii CTAACA Trichechus_manatus GTAACT Loxodonta_africana GTAACT Procavia_capensis GTATCT Orycteropus_afer GTAACA Dasypus_novencinctus GTAACT Choloepus_hoffmanni GTTACT Homo_sapiens_Exon2 ------ Homo_sapiens_Exon3 ------ Homo_sapiens_Exon4 ------ Homo_sapiens_Exon5 ------ Homo_sapiens_Exon6 ------ Homo_sapiens_Exon7partial GTAACT ; End; begin paup; charset exon2 = 1-66; charset startcodon = 13-15; charset exon3 = 67-114; charset exon4 = 115-160; [not functional in afrotherians and xenarthrans] charset exon5 = 161-205; charset exon6 = 206-664; charset exon7 = 665-786; charset stopcodon = 668-670; end; [Ensembl coordinates and accession numbers as follows: Homo sapiens: NG_012040 Echinops telfairi: AAIY02186687 Chrysochloris asiatica: AMDV01055021 Elephantulus edwardii: AMGZ01157733 Trichechus manatus: AHIN01118272 Loxodonta africana: AAGU03061270 Procavia capensis: ABRQ01169270 (Exon 1); ABRQ01169271 (other exons) Orycteropus afer: ALYB01242162 (exon 1); ALYB01242161 (exons 3-6); and ALYB01071525 (exon 7) Dasypus novemcinctus: AAGV03101155 (exons 1-7); exon 7 (TI 1886397515) Choloepus hoffmanni: ABVD01303812 (exon 2); ABVD01303813 (exon 3); ABVD01303814 (exons 4-6); ABVD01303815 (exon 7)] [Notes on trace files for Dasypus and Choloepus: Dasypus: splice site at end of intron 6 and 5' end of exon 7 (including stop codon) are deleted (see TI 1886397515) Choloepus: mutated stop codon and frameshift in exon 2 are clear in gnl|ti|1325289135 and gnl|ti|1311883086; stop codon in exon 4 is confirmed by traces gnl|ti|1325336699 and gnl|ti|1312095734; frameshift in exon 6 is evident in traces gnl|ti|1295061785 and gnl|ti|1363579107 (best of these two)]