#NEXUS

Begin DATA;
	Dimensions ntax=35 nchar=1867;
	Format datatype=NUCLEOTIDE interleave gap=-;
	Matrix
	[                                 1         11        21        31        41        51        ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            AAAGGGAATTCACAAATGATTGCCATACAAAACCAAGACTTCATCTTGTGAAGGTTTTTG
	Alligator_mississippiensis_Exon1  AAGGGAAATTCACAAATGATTGCCATACAAAACCAAGACTTTATCTTGTGAAGGTTTTTG
	Chrysemys_picta_Exon1             ----GAAAACTCCTGTGTTCTGCCACAAAACACAAAATCTTTATCTCGTGAAGATTTCT-
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 ------------------------------------------------------------
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 61        71        81        91        101       111       ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            AGACTTGGATCTGCAGGTTCTAAAAAAGCAGCTCAAGCCAGCTA-ATCAAGGTAGAGCTC
	Alligator_mississippiensis_Exon1  AGACTTGGATCTGCAGGTTCTAAAAAAGCAGCTCAAGCCGGCTA-ATCAAG---------
	Chrysemys_picta_Exon1             CTACTTCCATCACCAGAATCAGGAAGAGCAGTTCAGGTAACATTCATCA-----------
	Alligator_mississippiensis_Exon2  ---------------------------------------------------GTAGAGCTC
	Chrysemys_picta_Exon2             ---------------------------------------------------AGAGATCTC
	Anas_platyrhynchos_Exon2          ---------------------------------------------------GAAGCTTTT
	Gallus_gallus_Exon2               ---------------------------------------------------GAAGCTCTT
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 ------------------------------------------------------------
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 121       131       141       151       161       171       ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            TGAAATATGAATGTCTGGATGCTGACGTTATGCCTCCTAGGCACAGGGTTTGCTTTGCCA
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  TGAAATATGAATGTCTGGATGCTGACGTTATGCCTCCTAGGCACAGGGTTTGCTTTGCCA
	Chrysemys_picta_Exon2             TGACATATGAATGACTGGATGCTGATTTTATGCTACCTAGACACAGGTTTTGCTCTGCCA
	Anas_platyrhynchos_Exon2          GGAAATATGAATGACCATATGCTGATTTTATGCCTCCTTGGTATAAGTGTTGCTCTGCCA
	Gallus_gallus_Exon2               GGAAATGGGCATGACTTTATGTGTATTTCATGTCTCCTTAGCACAAGTGTTGCTCTGCCT
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 ------------------------------------------------------------
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 181       191       201       211       221       231       ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            ATGTACCCTCAGCATACTGGGACACGTGGAATGGCTAGTATGAGCCTT--GAGATGAGAC
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ATGTACCCTCAGCATACTGGGACACGTGGAATGGCTAGTATGAG-CCTT-GAG-------
	Chrysemys_picta_Exon3             CTGTACTCTCAGCA----GG----C-TGGAATGGCTAGTTTAAG-CCTT-GAG-------
	Anas_platyrhynchos_Exon3          ACGTACCCTCAGCATGCTAGACCACAGGGAATGGC--GTTGAGG--TTT-GTA-------
	Gallus_gallus_Exon3               ATGTACCCTCAACATTACAGGCCCCAGGTAGTGACCAGTATAAGACCCCAGTA-------
	Alligator_mississippiensis_Exon4  -----------------------------------------------------ATGAGGC
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 ------------------------------------------------------------
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 241       251       261       271       281       291       ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            AATATGGTCGACAAAACATGAACATGCTTCCACAGTATGGTCGGTACGACTATGGTGAAC
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  AATATGGTCGACAAAACATGAACATGCTTCCACAG-------------------------
	Alligator_mississippiensis_Exon5  -----------------------------------TATGGTCGGTACGACTATGGTGAAC
	Anas_platyrhynchos_Exon5          -----------------------------------CATAGCCACTATGAATATGGAAAGC
	Gallus_gallus_Exon5               -----------------------------------NNNNNNNNNNNNNNNNNNNNNNNNN
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 ------------------------------------------------------------
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 301       311       321       331       341       351       ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            CATTTAATTCAGTCTGGCTGCATGGTCTTCTCCCACCACACTCTTCATTTCCATGGTTAC
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  CATTTAATTCAGTCTGGCTGCATGGTCTTCTCCCACCACACTCTTCATTTCCATGGTTAC
	Anas_platyrhynchos_Exon5          CCTTTAACTCTATCTGATGGCATGGATTTCTGTTGGCATATTCTTCATATACCTGGCCAA
	Gallus_gallus_Exon5               NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTGTCCCATATTCTTCCTATCCTTGGCCAA
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 ------------------------------------------------------------
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 361       371       381       391       401       411       ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            AGCAAAGACCACAAGAACATGAGACCCAACAGTATGAATATGCAATGCCTGTACATCCAC
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  AGCAAAGACCACAAGAACGTGAGACCCAACAG----------------------------
	Anas_platyrhynchos_Exon5          GGCAAAAGACTTGGGAATGCGAGACCCAACAG----------------------------
	Gallus_gallus_Exon5               GACAAAGGGCACAGAAATATGAGACCCAAAAG----------------------------
	Alligator_mississippiensis_Exon6  --------------------------------TATGAATATGCAATGCCTGTACATCCAC
	Chrysemys_picta_Exon6             --------------------------------TATGAATCGGCCTGGCCTGTGCACCCTT
	Anas_platyrhynchos_Exon6          --------------------------------TATGAATAACCAATACCTGTCTATCCTC
	Gallus_gallus_Exon6               --------------------------------TATGAACATGCAATACCTGTCTACCTTC
	Taeniopygia_guttata_Exon6         --------------------------------TACAAACACACAATGCTGATCTATCCTA
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 ------------------------------------------------------------
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 421       431       441       451       461       471       ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            CACCTCTGCCATCGCTGCAGACCCCACTTCAGCCACAGCAACCAAGATTACAGGCTCAGA
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  CACCTCTGCCATCGCAGCAGACCCCACTTCAGCCACAGCAACCAAGATTACAGGCTCAGA
	Chrysemys_picta_Exon6             CACCTCCGCTATTACAGAAGATGGCTCTTCAACTGAAACAACTTCAAT------------
	Anas_platyrhynchos_Exon6          TTCTGCTGCCTCCCAGAAGACACTGCTTCGAACC-CAGCAACCCATCTTACAAGCACAAA
	Gallus_gallus_Exon6               TTAGGCTGCCACCCCAGAAGACATCATTTTAACTCTGCGAATCCAAGTTACAAGCACAAA
	Taeniopygia_guttata_Exon6         CACCATTGCCATCCCAGCAGAAACCTCTTTGACCCTGTCAGCCTAGGCTGCAAGATCAAA
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 ------------------------------------------------------------
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 481       491       501       511       521       531       ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            ATCCTTCCTTGCGCTCAACGCTGCCCACAAAGCAAGGTCAAATACAGCTGAACGAAGCGT
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ATCCTTCCCTGCACTCAACACTGCCCTCAAAGCAAGGTCAAATACAGCAGAACGAAGTGT
	Chrysemys_picta_Exon6             ATCCTTTCCCACAACC--AACTCAGATGCCTGCAAGG-CAAGG-CCGCAGAATGAAGTG-
	Anas_platyrhynchos_Exon6          ACCCATTGCTGCAGCCTATGCTGCGGATCCAGCT----------CAGTGCAATGAAGTGC
	Gallus_gallus_Exon6               ACCCACTGCTGAATCCTATACTGCAGTCCCACCC----------CAGCACAATAAAGCAC
	Taeniopygia_guttata_Exon6         ACCCACTGCTGCTGCCCAAGAAAAAATCCCAGCC----------CAGTGCATTGAAGCAC
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 ------------------------------------------------------------
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 541       551       561       571       581       591       ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            TGCTGCCCGTCCAAGT------GGGACAGCCACCACTGCAGCAAGGAGAACTGCCTGGGA
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  TGCCGCCCATCCAAGT------GGGACAGCCATCACTGCAGCAAGGAGAACTGCCTGGGA
	Chrysemys_picta_Exon6             ---CACC-AAACAGGTCCAGCAGGGACAGCCATCACTGCAACAAGGCGAACTGCCAGCTG
	Anas_platyrhynchos_Exon6          AGCCACCCAGGCCTGAA-----GGGCCAGCTGGCATTTCATCAAGAAAAGATTCCTGGCA
	Gallus_gallus_Exon6               AACTACCAAGCCCTGCA-----GGCTGAACTGCCTCTTCACCAAG---------------
	Taeniopygia_guttata_Exon6         AGCTACTATATCTACAG-----GGGTGGCAGCTGTCT-CACCAACTTTTCAAGACTCTGG
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 ------------------------------------------------------------
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 601       611       621       631       641       651       ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            TTCAACAACAGCTGATACCAGCAGACAAGCAGCTACAGTTACCAGCGCTGGAATATTCAG
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  TTCAACAACAACTGGTACCAGCAGACAAGCAGCTACAG----------------------
	Chrysemys_picta_Exon6             GTTC-------TTGCTTGCAGACAACAATACGCTA-------------------------
	Anas_platyrhynchos_Exon6          TCCAGCAACAGTTGACAGATGCCAGTGGTCAACAGCAG----------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         CAACAGTACAA--GCCAGCTGCCAAAAGTAAACAGCAG----------------------
	Alligator_mississippiensis_Exon7  --------------------------------------TTACCAGCGCTGGAATATTCAG
	Anas_platyrhynchos_Exon7          --------------------------------------TTACCGGCACCAGAATATTCAG
	Taeniopygia_guttata_Exon7         --------------------------------------CTGTTCTCACCACAATAATAAG
	Melopsittacus_undulatus_Exon7     --------------------------------------TTACTCGAACCAGAATATTCAG
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 ------------------------------------------------------------
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 661       671       681       691       701       711       ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            GGCATTTGGGTCAGGTGATGTACCCAATTGTCCATCAGTTAGTCCACCAAGGTCCAATGC
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  GGCATTTGGGTCAGATG-------------------------------------------
	Anas_platyrhynchos_Exon7          GGTATTTGTGACTCAAT-------------------------------------------
	Taeniopygia_guttata_Exon7         GGCTTTTGAGTTCCAAG-------------------------------------------
	Melopsittacus_undulatus_Exon7     GGCATTTGAGTCTCAAG-------------------------------------------
	Alligator_mississippiensis_Exon8  -----------------ATGTACCCAATTGTCCATCAGTTAGTCCACCAAGGTCCAATGC
	Chrysemys_picta_Exons8            -----------------ATGTACCCAGTTGTACATCAAGAAGCTCAG------CAAGACC
	Anas_platyrhynchos_Exon8          -----------------ATGTACCCAACTGTACATCAATTAGACTAGCAAGGGCAAACAG
	Taeniopygia_guttata_Exon8         -----------------ATGTACCCAGCTGCATGTCAATTAATCCAGCAAAGGAAATCAG
	Melopsittacus_undulatus_Exon8     -----------------ATGTACCCAACTGCATATCAATTAGTTCAGTAAGGTGAAGCAC
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 ------------------------------------------------------------
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 721       731       741       751       761       771       ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            AACCACAACAGCAACCAGCATTGCATCCTGCCCTGTTTTACATGTCCTATGCAGCAAACC
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  AACCACAACAGCAACCAGCA----------------------------------------
	Chrysemys_picta_Exons8            CAACAGAACAACCACCAGGA----------------------------------------
	Anas_platyrhynchos_Exon8          CTTCTG--CAACAACCAATT----------------------------------------
	Taeniopygia_guttata_Exon8         AACAACCCCTGCAGAAAGCA----------------------------------------
	Melopsittacus_undulatus_Exon8     AACAGCCCCTGCAACAGCCA----------------------------------------
	Alligator_mississippiensis_Exon9  --------------------TTGCATCCTGCCCTGTTTTACATGTCCTATGCAGCAAACC
	Chrysemys_picta_Exon9             --------------------CTTTACCCTGGGTTGTATTATGTGCCCCATATAGCAAAAC
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 ------------------------------------------------------------
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 781       791       801       811       821       831       ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            AAGGAGGTGCTCCCGCTAGGCTTGGCATAGTGAGTTCAGAAGAAATGC---TGGGAGGCA
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  AAGGA-------------------------------------------------------
	Chrysemys_picta_Exon9             AAGGA-------------------------------------------------------
	Alligator_mississippiensis_Exon10 -----GGTGCTCCTGCTAGGCTTGGCATAGTGAGTTCAGAAGAAATGC---TG-------
	Chrysemys_picta_Exon10            -----GGTCCCCC-----------ACTTAGGAAGCTCAGAAGAAATGCAGGTA-------
	Alligator_mississippiensis_Exon11 -----------------------------------------------------GGAGGTA
	Chrysemys_picta_Exon11            -----------------------------------------------------GGGCTAT

	[                                 841       851       861       871       881       891       ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            GAGGTGGGGTACCCGCCTACGGTGCCATGATTCCTGGATTCAGAGGGATGCCTCAGGACC
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 GAGGTGGGGTACCCGCCTATGGTGCCATGATTCCTGGATTCAGAGGGATGCCTCAGGACC
	Chrysemys_picta_Exon11            ACAGAGAGGCTCCTCGTTTTGTAGGCATGGACACTGGATTCGGGGGAATGCAGCAAAACC

	[                                 901       911       921       931       941       951       ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            CAGCCCTCCAGGGAGATTTCACAACGGAAGATGATAACCCTGCTAC---AGCACA--TAA
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 CAGCCCTCCAGGGAGATTTCACAACGGAAGATGATAACCCTGCTAC---AGCACA--TAA
	Chrysemys_picta_Exon11            CAGCCCTTCAGGGAGATTTTACTGTGGAGGATGATTAGCCAGCAGCCCAAGGAGGGTTGA

	[                                 961       971       981       991       1001      1011      ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            TCCAGCCATCC-AAGGAGGCGCCAACCAGG-GCTTCTCAAGAGGCTCCCGATTTCCAGCA
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 TCCAGCCATCC-AAGGAGGCGCCAACCAGG-GCCCCTCAAGAGGCTCCCAATTTTTGGCA
	Chrysemys_picta_Exon11            TCTTTGTTCCCCAAGCAGGCTCC--CCTGGAGTTCCTCCCTGGAGTCTC---TTCCTGGA

	[                                 1021      1031      1041      1051      1061      1071      ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            GTGAATCGTGCAGGCCATGGAAGTGCCATA--CTTCTTCCAGATGGGACCCCAGCAGGAC
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 GTGAATCCTGCAGGCCATGGAAGTGCCATA--CTTCTTCCAGAGGGGATCCCAGCAGGAC
	Chrysemys_picta_Exon11            ATTAATCCGTCAGGTCCTGGAATTGCTGGAATCCCCTTCCAGAGAAGACTCCAGTGGGCC

	[                                 1081      1091      1101      1111      1121      1131      ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            -ACGAGG-----GTTTTTTGCCAAATATTAACGATATGCCAGGCCAAGGGGTCAATCCTG
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 -AGGAGG-----GTTTTTTGCCAAATATTAACGATATGCCAGGCCAAGGGGTCAATCCTG
	Chrysemys_picta_Exon11            TAGAAGGCAACAATAATTTGCCAA------------------------------------

	[                                 1141      1151      1161      1171      1181      1191      ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            TTGGTCAGAGAGGAACTCCAGAGGTGACTCCAACTGCTACAGCCCCAGAATTAACACAGG
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 TTGGTCAGAGAGGAACTCTAGGGGTGACTCCAACTGCTACAGCCCCAGAATTAACACAGG
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 1201      1211      1221      1231      1241      1251      ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            GTATCCCTGACAGCTTTATGACCTTTGGTGCTGAGGGCACAGTACCCCTGGGTATACAGA
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 GTATCCCTGACAGCTTTATGACCTTTGGTGCTGAGGGCACAGTACCTCTGGGTATACAGA
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 1261      1271      1281      1291      1301      1311      ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            AGGAAGTGACCGCGGACCCTACCATGTTCCCAGAAGCTCAGCATACGCTCATGGCAGGAA
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 AAGAAGTGACCGTGGACCCTACCATGTTCCCAGAAGCTCAGCATACGCTCATGGCAGGAA
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 1321      1331      1341      1351      1361      1371      ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            ATGGGGCTGAACAGCCACAGGTTATGCAAGATGTCTGGCATTTCCAAGAGCCCTGAGCAT
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 ATGGGGCTGAACAGCCACAGGTTATGCAAGATGTCTGGCATTTCCAAGAGCCCTGAGCAT
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 1381      1391      1401      1411      1421      1431      ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            ACTTTGGAAACATACTCATATCATTCATGTATACCCTATGCCTGATGCACTGGCCAACAA
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 ATTTTGGAAACATACTCATATCATTCATGTATACCCTATGCCTGATGCACTGGCCAACAA
	Chrysemys_picta_Exon11            --------------CTTACATCGTTCAAGTATTTGCTATGCCTGATGCACTGGCAAAAAC

	[                                 1441      1451      1461      1471      1481      1491      ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            ATCTGTTTATCTGCTTCTGTGGCATTAGCAATAAAACATTTAAATGTGTTTATGCAGCTG
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 ATCTGTTTATCTGCTTCTATGGCATTAGCAATAAAACATTTAAATGTGTTTATGCAGCTG
	Chrysemys_picta_Exon11            ATCTA-------------------------------------------------------

	[                                 1501      1511      1521      1531      1541      1551      ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            TGGAAATGCTGGTGCAACTTTATTTTGTCTCTTTCCCAAATGAGAAAGAAAAAAGCTCTC
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 TGGAAATGCTGGTGCAACTTTATTTTGTTTCTTTCCCAAATGAGAAAGAAAAAAGCTCTC
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 1561      1571      1581      1591      1601      1611      ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            TTCACATTCAAGTGATTAATAGTTCAACTAAATCCTGCAGTTAATTACCATCAGTTTCCC
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 TTCACATTCAAGTGATTAATAGTTCAACTAAATCCTGCAGTTAATTACCATCAGTTTCCC
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 1621      1631      1641      1651      1661      1671      ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            CCTCCCCGCTAGAAATCAGTCAAATTCCAGGTGTTTGTGGCGTGTCCCTGAGAATAAAAC
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 CCTCCCCCCTAGAAATCAGTCAAATTTCAGGTGTTTGTGGAGTGTCCCTGAGAATAAAAC
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 1681      1691      1701      1711      1721      1731      ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            CAAGAAAATGTATAACAATTATTTCTTTTTAAAACTTTGCCTTTAGAGAACTGAGATGCA
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 CAGGATGACGTATAACAATTATTTCTTTTTAAAACTTTGCCTTTAGAGAACTGAGATGCA
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 1741      1751      1761      1771      1781      1791      ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            TTCTGATAGACATATTGTTTCATTCAAACAGTTAACTGGTGTTTATGGCCCAAACCCCTG
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 TTCTGATAGACACGTTGTTTCATTCAAACAGTTAACCGGTGTTTATGGCCCAAACCCCTG
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 1801      1811      1821      1831      1841      1851      ]
	[                                 |         |         |         |         |         |         ]
	Caimen_crocodilus_mRNA            GCTTTGTTAAACATGTTGGTCTACTGCACTTGAGAGTTAGTTAGTATATAATAAACTTCT
	Alligator_mississippiensis_Exon1  ------------------------------------------------------------
	Chrysemys_picta_Exon1             ------------------------------------------------------------
	Alligator_mississippiensis_Exon2  ------------------------------------------------------------
	Chrysemys_picta_Exon2             ------------------------------------------------------------
	Anas_platyrhynchos_Exon2          ------------------------------------------------------------
	Gallus_gallus_Exon2               ------------------------------------------------------------
	Alligator_mississippiensis_Exon3  ------------------------------------------------------------
	Chrysemys_picta_Exon3             ------------------------------------------------------------
	Anas_platyrhynchos_Exon3          ------------------------------------------------------------
	Gallus_gallus_Exon3               ------------------------------------------------------------
	Alligator_mississippiensis_Exon4  ------------------------------------------------------------
	Alligator_mississippiensis_Exon5  ------------------------------------------------------------
	Anas_platyrhynchos_Exon5          ------------------------------------------------------------
	Gallus_gallus_Exon5               ------------------------------------------------------------
	Alligator_mississippiensis_Exon6  ------------------------------------------------------------
	Chrysemys_picta_Exon6             ------------------------------------------------------------
	Anas_platyrhynchos_Exon6          ------------------------------------------------------------
	Gallus_gallus_Exon6               ------------------------------------------------------------
	Taeniopygia_guttata_Exon6         ------------------------------------------------------------
	Alligator_mississippiensis_Exon7  ------------------------------------------------------------
	Anas_platyrhynchos_Exon7          ------------------------------------------------------------
	Taeniopygia_guttata_Exon7         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon7     ------------------------------------------------------------
	Alligator_mississippiensis_Exon8  ------------------------------------------------------------
	Chrysemys_picta_Exons8            ------------------------------------------------------------
	Anas_platyrhynchos_Exon8          ------------------------------------------------------------
	Taeniopygia_guttata_Exon8         ------------------------------------------------------------
	Melopsittacus_undulatus_Exon8     ------------------------------------------------------------
	Alligator_mississippiensis_Exon9  ------------------------------------------------------------
	Chrysemys_picta_Exon9             ------------------------------------------------------------
	Alligator_mississippiensis_Exon10 ------------------------------------------------------------
	Chrysemys_picta_Exon10            ------------------------------------------------------------
	Alligator_mississippiensis_Exon11 GCTTTGTTAAACATGTTGGTCTAATGCACTTGAGAGTTAGTTAGTATATAATAAACTTCT
	Chrysemys_picta_Exon11            ------------------------------------------------------------

	[                                 1861      ]
	[                                 |       ]
	Caimen_crocodilus_mRNA            ATATAAC
	Alligator_mississippiensis_Exon1  -------
	Chrysemys_picta_Exon1             -------
	Alligator_mississippiensis_Exon2  -------
	Chrysemys_picta_Exon2             -------
	Anas_platyrhynchos_Exon2          -------
	Gallus_gallus_Exon2               -------
	Alligator_mississippiensis_Exon3  -------
	Chrysemys_picta_Exon3             -------
	Anas_platyrhynchos_Exon3          -------
	Gallus_gallus_Exon3               -------
	Alligator_mississippiensis_Exon4  -------
	Alligator_mississippiensis_Exon5  -------
	Anas_platyrhynchos_Exon5          -------
	Gallus_gallus_Exon5               -------
	Alligator_mississippiensis_Exon6  -------
	Chrysemys_picta_Exon6             -------
	Anas_platyrhynchos_Exon6          -------
	Gallus_gallus_Exon6               -------
	Taeniopygia_guttata_Exon6         -------
	Alligator_mississippiensis_Exon7  -------
	Anas_platyrhynchos_Exon7          -------
	Taeniopygia_guttata_Exon7         -------
	Melopsittacus_undulatus_Exon7     -------
	Alligator_mississippiensis_Exon8  -------
	Chrysemys_picta_Exons8            -------
	Anas_platyrhynchos_Exon8          -------
	Taeniopygia_guttata_Exon8         -------
	Melopsittacus_undulatus_Exon8     -------
	Alligator_mississippiensis_Exon9  -------
	Chrysemys_picta_Exon9             -------
	Alligator_mississippiensis_Exon10 -------
	Chrysemys_picta_Exon10            -------
	Alligator_mississippiensis_Exon11 ATATAAT
	Chrysemys_picta_Exon11            -------

;
End;

begin paup;
charset exon1 = 1-111;
charset exon2 = 112-180;
charset exon3 = 181-233;
charset exon4 = 234-275;
charset exon5 = 276-392;
charset exon6 = 332-638;
charset exon7 - 639-677;
charset exon8 = 678-740;
charset exon9 = 741-785;
charset exon10 = 786-833;
charset exon11 = 834-1867;
charset startcodon = 127-129;
charset stopcodon = 1374-1376;
end;

[Ensembl coordinates and accession numbers as follows:

Caimen crocodilus: AY043290

Alligator mississippiensis: scaffold 107_4 (AKHW01001058)

Chrysemys picta: scaffold:ChrPicBel3.0.1:JH584398.1:416582:416685:1 (exon 1); scaffold:ChrPicBel3.0.1:JH584398.1:418091:418159:1 (exon 2); 
scaffold:ChrPicBel3.0.1:JH584398.1:418381:418422:1 (exon 3); scaffold:ChrPicBel3.0.1:JH584398.1:420174:420388:1 (exon 6); 
scaffold:ChrPicBel3.0.1:JH584398.1:423019:423075:1 (exon 8); scaffold:ChrPicBel3.0.1:JH584398.1:423195:423239:1 (exon 9);
scaffold:ChrPicBel3.0.1:JH584398.1:423475:423511: (exon 10); scaffold:ChrPicBel3.0.1:JH584398.1:424735:425000:1 (exon 11, 5' fragment); 
scaffold:ChrPicBel3.0.1:JH584398.1:427985:428035:1 (exon 11, 3' fragment)

Melopsittacus undulatus: scaffold:MelUnd6.3:JH556633.1:9390602:9390640:-1 (exon 7); scaffold:MelUnd6.3:JH556633.1:9389987:9390049:-1 (exon 8)

Anas platyrhynchos: scaffold:duck1:scaffold247:1779919:1779987 (exon 2); scaffold:duck1:scaffold247:1781280:1781327:1 (exon 3);
scaffold:duck1:scaffold247:1785613:1785729:1 (exon 5); scaffold:duck1:scaffold247:1787138:1787367:1 (exon 6);
scaffold:duck1:scaffold247:1789420:1789458:1 (exon 7); scaffold:duck1:scaffold247:1790018:1790078:1 (exon 8)

Gallus gallus: chromosome:WASHUC2:Z:53370741:53370809:-1 (exon 2); chromosome:WASHUC2:Z:53369939:53369991:-1 (exon 3)
chromosome:WASHUC2:Z:53367646:53367754:-1 (exon 5); chromosome:WASHUC2:Z:53366076:53366253:-1 (exon 6)

Taeniopygia guttata: ABQF01041622]