Accuracy of Across-Environment Genome-Wide Prediction in Maize Nested Association Mapping Populations

Supporting Information for Guo et al., 2013

Files in this Data Supplement:

Supporting Information - File S1 and Tables S1-S38 (PDF, 576 KB)
File S1 - Method for estimation of variance components and broad sense heritability (H²) (PDF, 72 KB)
Table S1 - Variance components for traits LL and LW based on 25 NAM populations (PDF, 68 KB)
Table S2 - Estimates of empirical LOD thresholds of CIM based on permutation tests (PDF, 59 KB)
Table S3 - Estimates of genetic and residual covariance and correlation (in the lower diagonal) based on individual NAM populations 1-10 (PDF, 79 KB)
Table S4 - Estimates of genetic and residual covariances and correlations (in the lower diagonal) based on individual NAM populations 11-20 (PDF, 79 KB)
Table S5 - Estimates of genetic and residual covariances and correlations (in the lower diagonal) based on individual NAM populations 21-25 (PDF, 69 KB)
Table S6 - Estimates of genetic and residual covariance and correlation (in the lower diagonal) based on a full data set of 25 NAM populations (PDF, 61 KB)
Table S7 - Accuracy of WP prediction for environment E1 with QP and GWP in CV1 (PDF, 68 KB)
Table S8 - Accuracy of WP prediction for environment E2 with QP and GWP in CV1 (PDF, 69 KB)
Table S9 - Accuracy of WP prediction for environment E3 with QP and GWP in CV1 (PDF, 68 KB)
Table S10 - Accuracy of WP prediction for environment E4 with QP and GWP in CV1 (PDF, 68 KB)
Table S11 - Accuracy of AP prediction for environment E1 with QP and GWP in CV1 (PDF, 69 KB)
Table S12 - Accuracy of AP prediction for environment E2 with QP and GWP in CV1 (PDF, 69 KB)
Table S13 - Accuracy of AP prediction for environment E3 with QP and GWP in CV1 (PDF, 69 KB)
Table S14 - Accuracy of AP prediction for environment E4 with QP and GWP in CV1 (PDF, 69 KB)
Table S15 - Accuracy of WP prediction for environment E1 with QP and GWP in CV2 (PDF, 68 KB)
Table S16 - Accuracy of WP prediction for environment E2 with QP and GWP in CV2 (PDF, 68 KB)
Table S17 - Accuracy of WP prediction for environment E3 with QP and GWP in CV2 (PDF, 68 KB)
Table S18 - Accuracy of WP prediction for environment E4 with QP and GWP in CV2 (PDF, 68 KB)
Table S19 - Accuracy of AP prediction for environment E1 with QP and GWP in CV2 (PDF, 68 KB)
Table S20 - Accuracy of AP prediction for environment E2 with QP and GWP in CV2 (PDF, 68 KB)
Table S21 - Accuracy of AP prediction for environment E3 with QP and GWP in CV2 (PDF, 68 KB)
Table S22 - Accuracy of AP prediction for environment E4 with QP and GWP in CV2 (PDF, 68 KB)
Table S23 - Accuracy of WP prediction for environment E1 with four ME GWP models in CV1 (PDF, 67 KB)
Table S24 - Accuracy of WP prediction for environment E2 with four ME GWP models in CV1 (PDF, 66 KB)
Table S25 - Accuracy of WP prediction for environment E3 with four ME GWP models in CV1 (PDF, 66 KB)
Table S26 - Accuracy of WP prediction for environment E4 with four ME GWP models in CV1 (PDF, 66 KB)
Table S27 - Accuracy of AP prediction for environment E1 with four ME GWP models in CV1 (PDF, 66 KB)
Table S28 - Accuracy of AP prediction for environment E2 with four ME GWP models in CV1 (PDF, 66 KB)
Table S29 - Accuracy of AP prediction for environment E3 with four ME GWP models in CV1 (PDF, 66 KB)
Table S30 - Accuracy of AP prediction for environment E4 with four ME GWP models in CV1 (PDF, 66 KB)
Table S31 - Accuracy of WP prediction for environment E1 with four ME GWP models in CV2 (PDF, 66 KB)
Table S32 - Accuracy of WP prediction for environment E2 with four ME GWP models in CV2 (PDF, 66 KB)
Table S33 - Accuracy of WP prediction for environment E3 with four ME GWP models in CV2 (PDF, 66 KB)
Table S34 - Accuracy of WP prediction for environment E4 with four ME GWP models in CV2 (PDF, 66 KB)
Table S35 - Accuracy of AP prediction for environment E1 with four ME GWP models in CV2 (PDF, 66 KB)
Table S36 - Accuracy of AP prediction for environment E2 with four ME GWP models in CV2 (PDF, 66 KB)
Table S37 - Accuracy of AP prediction for environment E3 with four ME GWP models in CV2 (PDF, 66 KB)
Table S38 - Accuracy of AP prediction for environment E4 with four ME GWP models in CV2 (PDF, 66 KB)