Reconciliation of Sequence Data and Updated Annotation of the Genome of Agrobacterium tumefaciens C58, and Distribution of a Linear Chromosome in the Genus Agrobacterium

Supplemental material

Files in this Data Supplement:

• Supplemental file 1 -

  Southern blot hybridization for detection of telA (Fig. S1).

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• Supplemental file 2 -

  Supplemental materials and methods, Fig. S1 legend, positions and types of sequence discrepancies between the A. tumefaciens C58 genome sequences produced by Goodner et al. and Wood et al. (Table S1), distribution of AgroCir1, AgroCir2, and KE3 repetitive elements in sequenced Agrobacterium strains and close relatives (Table S2), repeat elements that overlap open reading frames in the A. tumefaciens C58 genome (Table S3), strains used as sequence references when comparing the two sequenced versions of A. tumefaciens C58 (Table S4), survey of Agrobacterium strains for telA, acvB, and the presence of a linear chromosome II (Table S5), and biovar I-specific protein-coding genes (Table S6).

  PDF, 455K