(Nostos,(Nocardia,(Streptomyces,Streptomyces)94)94);
(Desulfotalea,((Legionella,Vibrio)94,(Sinorhizobium,Agrobacterium)100)100);
(Symbiobacterium,(((((((((Methylococcus,Shewanella)1,((Chromobacterium,(Burcholderia,Ralstonia)96)51,Nitrosomonas)92)9,((Bdellovibrio,(((Nostos,(Synechosystis,(Prochlorococcus,Synechococcus)90)63)71,Thermus)71,(Pseudomonas,(Pseudomonas,Pseudomonas)88)100)26)8,(Deinococcus,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)45)71)100)45)5)7,(Vibrio,Vibrio)100)4,(Thermosynechococcus,((Leptospira,(Pirellula,Pirellula)100)73,Geobacter)47)11)11,(Desulfovibrio,Gloeobacter)26)24,Coxiella)83,(Ehrlichia,Wolbachia)100)74,(Gluconobacter,((Silicibacter,(Mesorhizobium,((Bartonella,Bartonella)100,((Agrobacterium,Sinorhizobium)95,(Brucella,(Brucella,Brucella)69)100)94)70)86)82,(Rhodopseudomonas,Bradyrhizobium)99)39)37)37);
(((((Brucella,Brucella)99,Brucella)100,((Burcholderia,Burcholderia)100,(Chromobacterium,(Bordetella,(Bordetella,Bordetella)97)100)54)83)59,Azoarcus)100,(Synechosystis,(Nostos,Gloeobacter)88)88);
((Streptococcus,Streptococcus)99,((Pasteurella,(Haemophilus,Mannheimia)84)99,((Streptococcus,Streptococcus)70,(((Legionella,Photorhabdus)63,(Erwinia,(Yersinia,Yersinia)100)98)46,(Neisseria,(Salmonella,(Shigella,Escherichia)100)100)65)43)32)32);
(((Idiomarina,Chromobacterium)89,(Ralstonia,((Burcholderia,Burcholderia)100,(Bordetella,(Bordetella,Bordetella)66)100)60)94)100,((Erwinia,(Buchnera,Photorhabdus)41)53,(Salmonella,(Shigella,Escherichia)100)100)100);
(Chlorobium,(Nitrosomonas,((Nocardia,Desulfotalea)86,(Xanthomonas,(Xanthomonas,Xanthomonas)65)100)57)57);
(Bacillus,(((((Mycobacterium,Mycobacterium)100,Mycobacterium)100,Nocardia)100,Shewanella)91,Gloeobacter));
(((Chlamydophila,Chlamydophila)99,Chlamydophila)100,((Rickettsia,(Rickettsia,Rickettsia)85)100,((Nitrosomonas,Mesorhizobium)88,(Burcholderia,Burcholderia)100)99)99);
(Thermosynechococcus,(Xanthomonas,(Xanthomonas,Xanthomonas)100)100);
(Leifsonia,(((Bradyrhizobium,Rhodopseudomonas)100,((Acinetobacter,Chromobacterium)63,Ralstonia)79)57,((Agrobacterium,Sinorhizobium)96,(Mesorhizobium,(Brucella,Brucella)100)57)100)100);
(((Brucella,Brucella)55,Brucella)100,(Escherichia,Shigella));
((Shewanella,Chromobacterium)100,(Bacteroides,Bacteroides));
(Desulfotalea,(Vibrio,(Vibrio,(Acinetobacter,(Wolinella,((Pseudomonas,Pseudomonas)100,(((Salmonella,(Escherichia,Shigella)100)97,Erwinia)64,(Yersinia,Yersinia)100)77)84)84)70)94)94);
(((Thermotoga,Methanobacterium)98,((Pyrobaculum,Archhaeoglobus)100,Dehalococcoides)81)99,(Methanosarcina,Methanosarcina));
(((((((((Vibrio,(Vibrio,Vibrio)20)53,Vibrio)100,((Salmonella,(Shigella,Escherichia)100)100,(Erwinia,(Yersinia,Yersinia)100)92)100)94,Idiomarina)97,Pseudomonas)57,Shewanella)98,((Chromobacterium,Azoarcus)26,Ralstonia)48)27,(Burcholderia,Burcholderia)100)100,(Zymomonas,((Rhodopseudomonas,Bradyrhizobium)99,((Sinorhizobium,Agrobacterium)91,(Brucella,(Brucella,Brucella)47)100)95)87)87);
(Haroarcula,(((((((Mycoplasma,(Staphylococcus,Staphylococcus)100)71,(Oceanobacillus,(Bacillus,Bacillus)100)75)70,Treponema)73,Porphyromonas)62,Ralstonia)99,Clostridium)41,(Pirellula,Pirellula)100)100);
(Listeria,(Desulfovibrio,((Silicibacter,Caulobacter)97,((((Nitrosomonas,((((Bordetella,Bordetella)91,Bordetella)100,(Ralstonia,(Burcholderia,Burcholderia)100)98)75,Azoarcus)49)53,Chromobacterium)92,Xanthomonas)73,(Pseudomonas,(Pseudomonas,Pseudomonas)59)100)62)65)65);
((Bradyrhizobium,Silicibacter)100,(((((Vibrio,Vibrio)43,Vibrio)87,Vibrio)77,Shewanella)97,(Azoarcus,(Ralstonia,(Bordetella,(Bordetella,Bordetella)67)100)81)87)87);
(Parachlamydia,(Geobacter,(Pirellula,Pirellula)100)100);
(Xanthomonas,(((Bordetella,Bordetella)76,Bordetella)100,(Ralstonia,(Burcholderia,Burcholderia)100)100)100);
(Streptococcus,((Erwinia,(Xanthomonas,(Xanthomonas,Xanthomonas)100)99)100,(Mycobacterium,(Mannheimia,Silicibacter)100)77)77);
(Haemophilus,(Mycoplasma,(Mycoplasma,Mycoplasma)83)83);
((Methanobacterium,Methanobacterium)100,(((Clostridium,(Clostridium,Clostridium)100)83,Thermoanaerobacter)44,((Thermotoga,(Porphyromonas,Methanobacterium)10)3,((Coxiella,Methanopyrus)27,((Geobacillus,Symbiobacterium)49,((((Prochlorococcus,Synechococcus)98,(Thermosynechococcus,(Synechosystis,Nostos)93)66)45,Gloeobacter)97,((Thermus,Deinococcus)95,(Streptomyces,(Pirellula,Pirellula)100)31)45)16)11)4)26)26);
((Clostridium,Clostridium)100,((((((((Streptococcus,Streptococcus)41,Streptococcus)33,Streptococcus)96,Lactococcus)100,(Lactobacillus,Enterococcus)58)74,(Lactobacillus,Lactobacillus)100)97,Bacillus)50,(Staphylococcus,Staphylococcus)100)100);
(Pyrobaculum,(Aeropyrum,((((((Methanobacterium,Methanobacterium)100,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)85)71)100)46,(Methanobacterium,((Haroarcula,Halobacterium)100,(Archhaeoglobus,(Methanosarcina,Methanosarcina)100)74)76)36)98,(Sulforobus,Sulforobus)100)37,Methanopyrus)25,(Nanoarchaeum,(Picrophilus,(Thermoplasma,Thermoplasma)99)100)68)72)72);
(Leptospira,(Acinetobacter,(((((Xanthomonas,(Xanthomonas,Xanthomonas)98)100,Chromobacterium)72,(Vibrio,(Vibrio,(Vibrio,Vibrio)88)96)98)25,(Pseudomonas,Pseudomonas)73)43,(Francizella,(Bordetella,Bordetella)100)85)61)61);
(Clostridium,(((Lactobacillus,Mycoplasma)68,Lactobacillus)100,Bifidobacterium));
(Pyrobaculum,((((Archhaeoglobus,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)73)76)100)58,((Methanopyrus,(Methanobacterium,Methanobacterium)100)12,(Methanobacterium,(Methanosarcina,Methanosarcina)100)46)1)28,(Halobacterium,Haroarcula)100)19,((Sulforobus,Sulforobus)100,(Aeropyrum,(Picrophilus,(Thermoplasma,Thermoplasma)100)100)52)49)49);
(Gloeobacter,((Pseudomonas,Geobacter)100,(((Xanthomonas,(Xanthomonas,Xanthomonas)95)100,Legionella)43,(Pirellula,Pirellula)100)96)96);
(Clostridium,(Lactobacillus,(Bifidobacterium,(Synechococcus,Prochlorococcus)100)88)88);
(((Methanosarcina,Methanosarcina)100,((Archhaeoglobus,Methanopyrus)78,((Methanobacterium,Methanobacterium)100,Methanobacterium)67)59)93,(Methylococcus,(Pirellula,Pirellula)100)100);
((Methanosarcina,Methanosarcina)100,(Geobacter,(((Mesorhizobium,Sinorhizobium)100,((Gloeobacter,((Synechosystis,Thermosynechococcus)59,Nostos)77)69,(Prochlorococcus,Synechococcus)100)100)36,((Thermoanaerobacter,Symbiobacterium)84,((Thermoplasma,Thermotoga)59,(Helicobacter,Wolinella)100)39)49)38)38);
(Clostridium,((Bacillus,(Bacillus,Staphylococcus)39)77,Geobacillus));
(Zymomonas,((Idiomarina,Shewanella)64,((Vibrio,(Vibrio,(Vibrio,Vibrio)96)63)52,(Photorhabdus,((Salmonella,(Escherichia,Shigella)100)98,(Erwinia,(Yersinia,Yersinia)100)63)61)100)36)36);
(Clostridium,(Oceanobacillus,((((Bacillus,(Enterococcus,(Streptococcus,Streptococcus)93)84)31,(Bacillus,Shewanella)29)34,(Nocardia,Streptomyces)100)33,((Vibrio,Desulfotalea)100,(Listeria,Listeria)100)77)38)38);
(((((((((((Mycoplasma,(Mycoplasma,(Mycoplasma,Ureaplasma)98)88)29,(Oceanobacillus,((((Bacillus,Bacillus)100,(Listeria,Listeria)100)31,((Lactobacillus,(Lactobacillus,Lactobacillus)49)70,((Lactococcus,((Streptococcus,Streptococcus)67,(Streptococcus,(Streptococcus,Streptococcus)84)40)71)99,Enterococcus)11)39),(Geobacillus,(Bacillus,Bacillus)76)26)15)94)50,Aquifex)10,(Campylobacter,((Helicobacter,Wolinella)49,Helicobacter)44)92)2,(((Leifsonia,(Gluconobacter,(Rhodopseudomonas,Silicibacter)65)100)43,(Leptospira,Deinococcus)13),(((Clostridium,Clostridium)98,((Dehalococcoides,Desulfotalea)49,Chlorobium)16)16,(Thermotoga,Thermoanaerobacter)50)16))10,(Propionibacterium,(Nocardia,(Corynebacterium,(Corynebacterium,Corynebacterium)83)98)100)90)21,Gloeobacter)60,Fusobacterium)100,(Haroarcula,Halobacterium)87)28,((((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)91)99)100,Methanopyrus)46,(Pyrobaculum,((Aeropyrum,Sulforobus)35,Sulforobus)43)68)6,(Archhaeoglobus,(Picrophilus,(Thermoplasma,Thermoplasma)100)74)14)10)5,((Methanobacterium,Methanobacterium)93,(Nanoarchaeum,(Methanobacterium,(Methanosarcina,Methanosarcina)100)25)7)7);
(Thermus,((((Bordetella,Bordetella)72,Bordetella)100,Silicibacter)100,Pseudomonas));
(((Propionibacterium,Leifsonia)90,Nocardia)52,(Chlamydophila,Treponema));
(Geobacillus,(((Pseudomonas,Pseudomonas)68,(((Vibrio,Vibrio)100,Campylobacter)94,Pseudomonas)47)99,(Silicibacter,Mesorhizobium)100)100);
(((Photorhabdus,Mannheimia)58,Ralstonia)100,(Lactobacillus,Lactobacillus));
(Dehalococcoides,(Desulfovibrio,(Chlorobium,(Leptospira,Methylococcus)100)78)78);
(Dehalococcoides,(Leifsonia,(Chlorobium,(Corynebacterium,Corynebacterium)100)87)87);
(Campylobacter,(Photorhabdus,(Pseudomonas,Pseudomonas)100)100);
(((((Bacillus,Bacillus)99,Bacillus)48,(Geobacillus,(Bacillus,Bacillus)100)89)95,Oceanobacillus)100,(Symbiobacterium,(Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)67)100)86)86);
((Sulforobus,Thermoplasma)95,(Clostridium,(Listeria,Listeria)100)100);
(Haroarcula,(((Zymomonas,Ralstonia)88,(Sinorhizobium,Agrobacterium)61)35,((Pseudomonas,Pseudomonas)94,(Clostridium,(((Burcholderia,Burcholderia)100,(Methylococcus,Wolbachia)50)67,(Pirellula,Pirellula)100)96)78)46)46);
((((((Agrobacterium,(Sinorhizobium,(Bartonella,Bartonella)100)37)49,Mesorhizobium)94,(Silicibacter,(Brucella,(Brucella,Brucella)63)100)74)30,Gluconobacter)100,(Rhodopseudomonas,Bradyrhizobium)100)100,(((Anaplasma,Ehrlichia)100,(Legionella,Coxiella)81)90,(Neisseria,(Ralstonia,(Burcholderia,Burcholderia)100)67)100)100);
(Sinorhizobium,(Corynebacterium,(Corynebacterium,Corynebacterium)58)58);
(Symbiobacterium,(Dehalococcoides,(Leptospira,(Oceanobacillus,(Bacillus,Bacillus)100)71)52)52);
((Xanthomonas,(Xanthomonas,Xanthomonas)50)100,(Chlamydophila,(Chlamydophila,Chlamydophila)100)100);
(Ralstonia,(((((Pyrococcus,Pyrococcus)94,Pyrococcus)97,Thermococcus)99,Methanobacterium)85,Haroarcula));
(Corynebacterium,(Rhodopseudomonas,(Bradyrhizobium,(Silicibacter,(Azoarcus,((Bordetella,(Bordetella,Bordetella)65)100,(Ralstonia,(Burcholderia,Burcholderia)100)93)76)43)44)62)62);
(Nostos,(((Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)100,Corynebacterium)100,Methylococcus));
(Nocardia,((((Xanthomonas,Xanthomonas)100,(Acinetobacter,(Mesorhizobium,Bradyrhizobium)94)80)73,Chromobacterium)100,Burcholderia));
(((Bacteroides,Bacteroides)100,Porphyromonas)100,(Chlamydophila,Streptomyces));
(((Staphylococcus,Staphylococcus)100,Bacillus)100,(Pseudomonas,(Yersinia,Yersinia)100)100);
(Nitrosomonas,(((Xanthomonas,Xanthomonas)99,Xylella)100,Legionella));
(Methanosarcina,((Listeria,Listeria)100,(Escherichia,Shigella)100)100);
((Silicibacter,Bradyrhizobium)67,((Legionella,(Xanthomonas,Xanthomonas)97)58,(Chromobacterium,Vibrio)100)100);
((((Xanthomonas,Xanthomonas)100,Xylella)100,(Pseudomonas,(Pasteurella,Mannheimia)90)100)100,(Pirellula,Pirellula));
(Methanosarcina,(Symbiobacterium,(((Helicobacter,(Lactococcus,(Lactobacillus,(Fusobacterium,Streptococcus)98)99)52)37,(Lactobacillus,(Lactobacillus,Bifidobacterium)39)83)33,(Listeria,Listeria)100)71)71);
(Symbiobacterium,(Gloeobacter,(((Nostos,Synechosystis)58,Thermosynechococcus)61,(Prochlorococcus,Synechococcus)100)83)83);
(Chromobacterium,(Nocardia,(Corynebacterium,Corynebacterium)68)68);
(Pyrobaculum,(Methanopyrus,((Aeropyrum,(Nanoarchaeum,(Sulforobus,Sulforobus)100)54)56,(Archhaeoglobus,((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)100)92)100,((Methanobacterium,(Methanosarcina,Methanosarcina)100)56,((Methanobacterium,Methanobacterium)100,((Picrophilus,(Thermoplasma,Thermoplasma)100)97,(Halobacterium,Haroarcula)100)40)24)64)46)57)88)88);
(Gluconobacter,(((Bordetella,Bordetella)92,Bordetella)100,(Burcholderia,Burcholderia)100)100);
((((Thermoanaerobacter,((Staphylococcus,Corynebacterium)25,(Geobacillus,Oceanobacillus)84)32)34,(Vibrio,(Vibrio,(Vibrio,Vibrio)98)100)100)94,(Thermus,Aeropyrum)53)100,(Methanopyrus,Methanobacterium));
((((((((Bordetella,Bordetella)78,Bordetella)100,Bdellovibrio)95,Ralstonia)100,Nostos)98,Gloeobacter)100,(Pyrobaculum,Aeropyrum)63)85,(Halobacterium,(Methanosarcina,Methanosarcina)100)100);
(Nocardia,(((Xanthomonas,Xanthomonas)88,Xanthomonas)100,Xylella));
(Mycoplasma,((((Pseudomonas,(Pseudomonas,Pseudomonas)58)40,Desulfotalea)63,Bdellovibrio)77,(Pirellula,Pirellula)100)100);
(Bacillus,(Erwinia,(Pseudomonas,(Streptomyces,Salmonella)99)100)100);
(((Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)91)89)96,Symbiobacterium)46,((((((Geobacillus,((Bacillus,Bacillus)100,(Listeria,Listeria)100)64)52,(Bacillus,Bacillus)100)57,Bacillus)62,Oceanobacillus)42,(Lactobacillus,(Enterococcus,(Lactococcus,(Streptococcus,(Streptococcus,(Streptococcus,(Streptococcus,Streptococcus)33)39)84)94)92)74)49)50,(Staphylococcus,Staphylococcus)100)100);
((((Pyrococcus,Pyrococcus)99,Pyrococcus)54,Thermococcus)100,(Symbiobacterium,(Methanopyrus,(Vibrio,Clostridium)100)46)46);
((Bacillus,Bacillus)100,(Mesorhizobium,Pseudomonas));
(Aquifex,(Bradyrhizobium,(Acinetobacter,(Clostridium,Campylobacter)50)50)50);
(((((Vibrio,Photorhabdus)100,Legionella)85,(Pseudomonas,Pseudomonas)100)71,Acinetobacter)99,(Nitrosomonas,(Bordetella,(Bordetella,Bordetella)81)100)100);
(Bacteroides,(((Brucella,(Brucella,Brucella)91)100,(Rhodopseudomonas,Sinorhizobium)83)100,(Chlamydophila,Parachlamydia)100)100);
(Symbiobacterium,(Propionibacterium,(Deinococcus,((((((Streptococcus,((Streptococcus,(Streptococcus,Streptococcus)73)70,Streptococcus)73)100,Lactococcus)100,Enterococcus)75,Lactobacillus)44,(Lactobacillus,Lactobacillus)100)99,((Bacillus,((Staphylococcus,Staphylococcus)100,(Bacillus,Bacillus)100)49)72,(Listeria,Listeria)100)70)99)57)57);
(Aquifex,((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)36)56)100,(Haroarcula,(Aeropyrum,(((Methanobacterium,(Methanobacterium,Methanobacterium)97)39,Methanopyrus)25,(Archhaeoglobus,(Methanosarcina,Methanosarcina)100)40)97)89)98)98);
((Silicibacter,Rhodopseudomonas)100,(((Bordetella,Bordetella)82,Bordetella)100,(Azoarcus,(Ralstonia,(Burcholderia,Burcholderia)100)98)98)98);
(((Clostridium,Thermoanaerobacter)55,Symbiobacterium)85,((Geobacillus,(Bacillus,Bacillus)98)60,(Oceanobacillus,(Bacillus,Bacillus)100)37)37);
(Parachlamydia,((((Nitrosomonas,Bordetella)100,Azoarcus)100,(Sinorhizobium,Mesorhizobium)92)100,Agrobacterium));
(Nocardia,((Vibrio,Vibrio)82,Vibrio));
((Synechococcus,(Nostos,Thermosynechococcus)84)61,((((((Ralstonia,(Burcholderia,Burcholderia)100)86,(Bordetella,Bordetella)100)90,Acinetobacter)45,(Pseudomonas,Pseudomonas)100)39,(Vibrio,(Escherichia,Pseudomonas)85)95)48,(Rhodopseudomonas,Bradyrhizobium)100)100);
(Synechococcus,((((((Vibrio,(Sinorhizobium,Agrobacterium)100)85,(Brucella,(Brucella,Brucella)67)100)94,Prochlorococcus)98,Streptomyces)83,Gloeobacter)86,Erwinia));
(Aquifex,(Pseudomonas,(Pseudomonas,Pseudomonas)89)89);
((Sulforobus,Haroarcula)74,(Geobacillus,(((((Sinorhizobium,Agrobacterium)100,Pseudomonas)24,(Caulobacter,Bradyrhizobium)34)10,((Streptomyces,Mesorhizobium)25,((Silicibacter,(Yersinia,Yersinia)100)46,(Burcholderia,((Bordetella,Bordetella)67,Bordetella)100)55)24)11)100,(Pirellula,Pirellula)100)63)63);
(Desulfotalea,((((Vibrio,Vibrio)96,Vibrio)97,Vibrio)100,((Nitrosomonas,Methylococcus)88,(Legionella,(Pseudomonas,(Pseudomonas,Pseudomonas)87)100)71)100)100);
(Sulforobus,(((Listeria,Listeria)100,Oceanobacillus)100,Sinorhizobium));
(Pyrobaculum,(Aeropyrum,((Sulforobus,Sulforobus)79,(Methanopyrus,((((Halobacterium,Haroarcula)100,(Methanosarcina,Methanosarcina)100)22,(Methanobacterium,Methanobacterium)36)6,((Archhaeoglobus,(Nanoarchaeum,Methanobacterium)32)17,((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)61)85)100,(Picrophilus,(Thermoplasma,Thermoplasma)100)98)24)5)39)80)45)45);
(((Archhaeoglobus,(Methanobacterium,Methanosarcina)98)98,Haroarcula)100,(Brucella,(Brucella,Brucella)98)98);
(Desulfotalea,((Idiomarina,Ralstonia)96,Acinetobacter));
(Pyrobaculum,(((((((Pyrococcus,Pyrococcus)59,Pyrococcus)100,Thermococcus)83,Methanobacterium)100,Archhaeoglobus)99,Methanopyrus)99,Aeropyrum));
(((Brucella,Brucella)95,Brucella)100,(Pasteurella,(Bordetella,(Bordetella,Bordetella)71)100)100);
(((((Idiomarina,(((Haemophilus,Mannheimia)39,Pasteurella)100,(Photorhabdus,(Erwinia,((Escherichia,Shigella)100,(Yersinia,Yersinia)100)64)59)100)90)32,Shewanella)43,((Methylococcus,(Xanthomonas,(Xanthomonas,Xanthomonas)87)100)38,(Pseudomonas,(Pseudomonas,Pseudomonas)56)100)79)66,Legionella)100,(Helicobacter,Campylobacter));
((Bacillus,Bacillus)100,(Streptomyces,(Bradyrhizobium,(Lactobacillus,(Escherichia,Shigella)100)100)84)84);
(Treponema,(Picrophilus,(Thermoplasma,Thermoplasma)100)100);
(Bacteroides,((((Xanthomonas,Xanthomonas)89,Xanthomonas)100,(Ralstonia,(Pseudomonas,Pseudomonas)100)93)92,Acinetobacter));
(((((((Azoarcus,((Bordetella,(Bordetella,Bordetella)53)100,(Ralstonia,(Burcholderia,Burcholderia)100)85)98)41,(Nitrosomonas,(Neisseria,Chromobacterium)46)37)61,((Idiomarina,(Shewanella,((Vibrio,Vibrio)96,(Vibrio,Vibrio)45)85)64)57,(Pseudomonas,Pseudomonas)100)90)20,Legionella)18,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)81)100)90)22,Methylococcus)100,(Caulobacter,(((Ehrlichia,Anaplasma)40,(Wolbachia,Wolbachia)100)67,(Rickettsia,(Rickettsia,Rickettsia)84)100)82)82);
(((Pseudomonas,Pseudomonas)70,Erwinia)67,((Bordetella,(Bordetella,Bordetella)92)100,(Ralstonia,(Burcholderia,Burcholderia)100)78)78);
((((((((Salmonella,(Shigella,Escherichia)83)85,((Buchnera,Buchnera)99,(Pasteurella,(Haemophilus,Mannheimia)64)99)36)15,Photorhabdus)8,(Erwinia,(Yersinia,Yersinia)100)39)13,(Pseudomonas,(Pseudomonas,Pseudomonas)84)100)42,(((Neisseria,Chromobacterium)95,((Ralstonia,(Bordetella,(Bordetella,Bordetella)74)100)48,(Burcholderia,Burcholderia)100)70)78,Shewanella)45)17,(Vibrio,((Vibrio,Vibrio)64,Vibrio)76)74)100,(Rickettsia,(Rickettsia,Rickettsia)98)98);
(Gluconobacter,(Methylococcus,(Burcholderia,Burcholderia)100)100);
(((Burcholderia,Burcholderia)100,Pseudomonas)100,(Silicibacter,Mesorhizobium));
(Mycobacterium,((Bordetella,Bordetella)92,Bordetella));
(Azoarcus,(Acinetobacter,(Yersinia,Yersinia)100)100);
(Streptococcus,(((Chromobacterium,Salmonella)55,(Ralstonia,Bordetella)100)97,(Idiomarina,Shewanella)100)100);
(((Bacteroides,Bacteroides)92,Porphyromonas)100,(Deinococcus,(Pseudomonas,(Pseudomonas,Pseudomonas)68)100)100);
(((Wolinella,(Desulfovibrio,Desulfotalea)100)93,Salmonella)100,(Bacillus,Bacillus));
((((((((((((Xylella,Xanthomonas)100,(Methylococcus,Azoarcus)41)20,(Bordetella,(Bordetella,Bordetella)54)100)34,(Ralstonia,(Burcholderia,Burcholderia)100)97)35,(Haemophilus,Neisseria)95)40,Nitrosomonas)71,(Desulfotalea,(Bradyrhizobium,Desulfovibrio)56)43)11,((Pirellula,Pirellula)100,((Nocardia,((Mycobacterium,(Mycobacterium,Mycobacterium)100)100,(Streptomyces,Streptomyces)100)37)62,Tropheryma)30)13)28,(Leptospira,Symbiobacterium)70)78,(Bacteroides,Bacteroides)100)50,((Shewanella,Vibrio)45,(Vibrio,(Vibrio,Vibrio)61)28)100)100,(Picrophilus,Thermoplasma));
(Brucella,(Vibrio,(Yersinia,Erwinia)100)100);
(Legionella,(Rickettsia,(Rickettsia,Rickettsia)58)58);
((Pyrobaculum,Streptomyces)85,(Sulforobus,Sulforobus));
((Mycobacterium,Mycobacterium)100,(Yersinia,Vibrio));
(Ralstonia,(Pseudomonas,(Pseudomonas,(Vibrio,(Erwinia,Pseudomonas)100)55)48)48);
(Aquifex,((Lactococcus,Enterococcus)77,(Listeria,Listeria)100)100);
((Synechococcus,Prochlorococcus)79,(Tropheryma,(Bartonella,Bartonella)100)100);
((Pirellula,Pirellula)100,((Bradyrhizobium,((Pseudomonas,(Photorhabdus,Ralstonia)46)68,(Salmonella,Pseudomonas)100)29)71,(Agrobacterium,(Vibrio,Vibrio)100)88)88);
((((Campylobacter,Helicobacter)100,((Treponema,Treponema)100,(Desulfovibrio,Desulfotalea)74)14)12,(Chlorobium,(Parachlamydia,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)100)86)95)100)34)100,(Porphyromonas,(Bacteroides,Bacteroides)97)97);
(Caulobacter,((((Escherichia,Salmonella)99,Photorhabdus)62,(Pseudomonas,Pseudomonas)89)75,(Xanthomonas,(Xanthomonas,Xanthomonas)73)100)100);
(Archhaeoglobus,((Shewanella,(Vibrio,(Desulfotalea,Vibrio)88)95)66,((Helicobacter,(Parachlamydia,Prochlorococcus)49)44,((Geobacter,Chlorobium)69,(Legionella,(Idiomarina,((((Azoarcus,Pseudomonas)36,Chromobacterium)43,Pseudomonas)55,(Bordetella,Bordetella)100)21)30)65)41)36)36);
((Escherichia,(Fusobacterium,(Clostridium,Treponema)96)95)100,(Halobacterium,Haroarcula));
((Methanosarcina,Methanosarcina)100,(Bacteroides,((Desulfovibrio,Geobacter)81,(Treponema,(Mannheimia,(Bacillus,Bacillus)100)59)80)89)89);
((((Clostridium,(Clostridium,Clostridium)58)80,Thermoanaerobacter)58,Symbiobacterium)74,((((((Bacillus,Bacillus)100,((Bacillus,Bacillus)100,Geobacillus)40)34,Bacillus)38,Oceanobacillus)85,((Listeria,Listeria)100,(Lactobacillus,Enterococcus)97)57)44,(((Lactococcus,(Staphylococcus,Staphylococcus)100)33,Leptospira)13,(Parachlamydia,(((Thermus,Deinococcus)100,((Thermosynechococcus,(Synechosystis,Nostos)84)76,(Gloeobacter,(Synechococcus,Prochlorococcus)100)29)74)61,(Pirellula,Pirellula)100)31)36)74)74);
((((Pseudomonas,Xanthomonas)34,(Xanthomonas,Azoarcus)69)58,(Pseudomonas,Pseudomonas)55)100,(Bdellovibrio,Desulfotalea));
((Sulforobus,Sulforobus)100,(((((((Vibrio,Vibrio)97,Vibrio)94,Vibrio)42,(Escherichia,(Erwinia,(Photorhabdus,(Yersinia,Yersinia)100)72)92)98)90,Shewanella)96,Methanobacterium)58,(Geobacillus,((Bacillus,Oceanobacillus)53,(Bacillus,Bacillus)100)72)100)100);
(Deinococcus,((Brucella,(Brucella,Brucella)83)84,(((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)60)86)100,(Mesorhizobium,(Agrobacterium,Sinorhizobium)78)52)21,((Bradyrhizobium,Rhodopseudomonas)100,((Methylococcus,Wolinella)22,(Pseudomonas,(((Salmonella,Escherichia)100,(Erwinia,(Photorhabdus,(Yersinia,Yersinia)100)59)77)98,((Vibrio,(Vibrio,Vibrio)87)100,(Mannheimia,Pasteurella)100)41)48)25)6)3)13)13);
(Aquifex,(Thermotoga,((Symbiobacterium,Thermoanaerobacter)4,(Geobacillus,(((Geobacter,Mycoplasma)22,Phytoplasma)4,(((Clostridium,(Clostridium,Clostridium)88)80,(Fusobacterium,Bacillus)8)3,(((Bacillus,((Listeria,Listeria)100,Bacillus)13)27,((Oceanobacillus,(Staphylococcus,Staphylococcus)97)29,(Bacillus,Bacillus)100)7)2,(((((Dehalococcoides,((Propionibacterium,((Leifsonia,(Tropheryma,Bifidobacterium)32)54,(Streptomyces,Streptomyces)100)32)19,(((Mycobacterium,(Mycobacterium,Mycobacterium)100)100,Nocardia)44,(Corynebacterium,(Corynebacterium,Corynebacterium)99)77)89)83)6,(Gloeobacter,((Nostos,(Synechosystis,(Prochlorococcus,Synechococcus)89)61)33,Thermosynechococcus)27)56)2,(((Chlorobium,(Porphyromonas,(Bacteroides,Bacteroides)99)59)43,(Desulfovibrio,Bdellovibrio)51)7,Desulfotalea)3),(((Lactobacillus,Lactobacillus)95,(Enterococcus,Lactobacillus)33)21,(Lactococcus,(Streptococcus,(Streptococcus,((Streptococcus,Streptococcus)71,Streptococcus)76)81)99)49)34),(((Silicibacter,((Deinococcus,Thermus)80,((Ureaplasma,Mycoplasma)98,(Rickettsia,(Rickettsia,Rickettsia)64)100)34)6)1,((((Legionella,(((((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)65)78)100,(Azoarcus,((Neisseria,Chromobacterium)17,(((Bordetella,Bordetella)40,Bordetella)100,(Ralstonia,(Burcholderia,Burcholderia)100)73)60)41)72)33,(Methylococcus,(Haemophilus,(Vibrio,(Vibrio,(Vibrio,Vibrio)83)71)88)93)92)20,Acinetobacter)19,(Pseudomonas,(Pseudomonas,Pseudomonas)74)78)68)78,(Pirellula,Pirellula)100)14,Zymomonas)5,((((Bartonella,Bartonella)99,(Mesorhizobium,((Agrobacterium,Sinorhizobium)83,(Brucella,(Brucella,Brucella)78)100)64)49)69,Caulobacter)54,((Gluconobacter,Leptospira)24,(Bradyrhizobium,Rhodopseudomonas)68)9)5)3)2,((Parachlamydia,(((Chlamydophila,Chlamydophila)60,Chlamydophila)50,Chlamydophila)99)99,(Treponema,((Wolinella,Helicobacter)96,(Wolbachia,(Borrelia,Borrelia)100)23)66)20)4)1)))2)1)16)57)57);
(Clostridium,(Dehalococcoides,((((Brucella,Brucella)78,Brucella)100,(Anaplasma,Chlorobium)89)100,(Blochmannia,(Borrelia,Borrelia)100)77)55)55);
(Bacteroides,((Chlorobium,Gluconobacter)90,(Vibrio,Pseudomonas)99)99);
(((Pyrococcus,(Pyrococcus,Pyrococcus)99)62,Thermococcus)79,(Pyrobaculum,(Clostridium,Thermotoga)65)65);
(Thermotoga,((Clostridium,Clostridium)100,Symbiobacterium));
(Leptospira,(Azoarcus,((Burcholderia,Burcholderia)100,(Ralstonia,(Nitrosomonas,Silicibacter)100)58)95)95);
(Rickettsia,((Methylococcus,Acinetobacter)66,Ralstonia));
(((Bordetella,Bordetella)67,Bordetella)100,(Haemophilus,(Mannheimia,Pasteurella)56)56);
(Pyrobaculum,(Methanopyrus,((Aeropyrum,(Sulforobus,Sulforobus)100)89,(Pyrococcus,(Archhaeoglobus,(Methanobacterium,Methanobacterium)100)88)100)100)100);
(((Bacteroides,Bacteroides)100,Porphyromonas)100,(Thermus,(Chlamydophila,Chlamydophila)100)100);
(Clostridium,((Clostridium,(Bacillus,Bacillus)100)86,((((((((Listeria,Listeria)100,(Bacillus,Bacillus)94)53,Oceanobacillus)58,Geobacillus)76,(Staphylococcus,Staphylococcus)100)76,Silicibacter)38,((Acinetobacter,Bifidobacterium)53,Photorhabdus)37)61,(Streptococcus,Streptococcus)100)100)100);
(Bradyrhizobium,((Burcholderia,Burcholderia)23,Pseudomonas));
(((Pirellula,Pirellula)100,Azoarcus)100,(Bacteroides,Bacteroides));
(Azoarcus,((((((((Salmonella,(Escherichia,Shigella)99)99,Photorhabdus)28,(Yersinia,Yersinia)100)53,Erwinia)81,Blochmannia)35,(Idiomarina,((Vibrio,(Vibrio,Vibrio)12)23,Vibrio)100)29)18,((Haemophilus,(Mannheimia,Pasteurella)40)90,Shewanella)12)62,Pseudomonas));
(Methanosarcina,((Gloeobacter,Nostos)92,Streptococcus));
(Sulforobus,(Silicibacter,(Pseudomonas,Pseudomonas)100)100);
(Nocardia,(Neisseria,(Pseudomonas,(Yersinia,Yersinia)100)88)88);
(((Pseudomonas,Pseudomonas)86,Pseudomonas)95,((Azoarcus,(Bordetella,(Bordetella,Bordetella)90)100)91,(Nitrosomonas,Neisseria)100)100);
(((((Xylella,Nitrosomonas)100,Azoarcus)46,(Bordetella,(Bordetella,Bordetella)100)100)93,Bdellovibrio)100,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)100)63)63);
(Thermotoga,((Desulfotalea,(Borrelia,Treponema)96)100,((Buchnera,Bordetella)58,((Sinorhizobium,((Brucella,Brucella)93,Brucella)100)100,((Rickettsia,(Anaplasma,Ehrlichia)100)67,(Chromobacterium,(Bradyrhizobium,Rhodopseudomonas)100)30)70)75)64)64);
(Fusobacterium,(Oceanobacillus,(Lactobacillus,Enterococcus)59)59);
((Synechosystis,Thermosynechococcus)98,(Treponema,(Wolinella,(Desulfotalea,(Brucella,Brucella)100)74)77)77);
(Bacillus,(((((Synechosystis,Thermosynechococcus)69,Nostos)71,Synechococcus)58,Gloeobacter)100,((Pseudomonas,(Pseudomonas,Pseudomonas)53)100,(Ralstonia,(Azoarcus,(Shigella,Escherichia)100)88)100)100)100);
(Haroarcula,(((Pirellula,Pirellula)100,Deinococcus)69,((Thermosynechococcus,(Nostos,Gloeobacter)66)100,(Bacillus,Geobacillus)100)52)52);
(Chromobacterium,((Vibrio,Vibrio)80,Vibrio));
(Rhodopseudomonas,(((((Vibrio,Vibrio)84,Vibrio)98,Vibrio)100,Acinetobacter)79,Chromobacterium));
(Aquifex,((Thermus,(Sinorhizobium,Parachlamydia)53)89,Mesorhizobium));
(((Bradyrhizobium,(Brucella,(Brucella,Brucella)77)100)38,((Mesorhizobium,Sinorhizobium)68,Agrobacterium)100)52,((Caulobacter,Pseudomonas)51,(Photorhabdus,(Xanthomonas,(Xanthomonas,Xanthomonas)99)100)20)20);
(Bdellovibrio,(((((((Escherichia,Shigella)100,Salmonella)72,Erwinia)100,Pseudomonas)52,Acinetobacter)100,Pseudomonas)95,(Shewanella,(Vibrio,Vibrio)100)97)97);
((Porphyromonas,(Bacteroides,Bacteroides)94)100,(Bdellovibrio,(Geobacter,(Desulfotalea,(Streptomyces,Streptomyces)100)35)57)57);
(Thermotoga,(Sulforobus,(Pyrococcus,Methanosarcina)88)88);
((Pirellula,Pirellula)100,((Bordetella,(Bordetella,Bordetella)94)100,((Xylella,(Xanthomonas,Xanthomonas)79)98,(Idiomarina,(Caulobacter,(Shewanella,Vibrio)100)61)83)40)40);
(Fusobacterium,(Oceanobacillus,((Lactococcus,Streptococcus)75,(Listeria,Listeria)95)94)94);
(Treponema,(Shewanella,(Pirellula,Pirellula)100)100);
((Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)69)87)61,((((((((((Bacillus,Bacillus)100,Geobacillus)58,Bacillus)14,((Bacillus,Bacillus)100,(Listeria,Listeria)100)44)49,Oceanobacillus)26,(Staphylococcus,Staphylococcus)100)34,((Lactococcus,(((Streptococcus,Streptococcus)45,Streptococcus)66,(Streptococcus,Streptococcus)33)96)70,((Pseudomonas,Pseudomonas)100,(Enterococcus,Lactobacillus)27)26)31)17,(Symbiobacterium,(Deinococcus,(Pirellula,Pirellula)100)80)62)45,(Lactobacillus,Lactobacillus)100)61,(Mycoplasma,(Ureaplasma,(Mycoplasma,(Mycoplasma,Mycoplasma)100)73)90)62)62);
((Neisseria,((Bordetella,(Bordetella,Bordetella)35)100,(Pseudomonas,(Pseudomonas,Pseudomonas)91)56)43)82,(((Idiomarina,Shewanella)58,Vibrio)77,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)73)94)100)100);
((Xanthomonas,(Xanthomonas,Xanthomonas)100)100,(((Methylococcus,Acinetobacter)96,(Burcholderia,Burcholderia)100)91,(Bordetella,Bordetella)100)100);
((((Nocardia,(Streptomyces,Streptomyces)100)71,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)100,Azoarcus)100,(Methanobacterium,Methanobacterium));
(Burcholderia,(((Brucella,(Brucella,Brucella)99)100,Agrobacterium)68,Mesorhizobium));
((Methanobacterium,Pyrococcus)100,(Caulobacter,(Pirellula,Pirellula)100)100);
(Thermotoga,(Leptospira,((((((((((Caulobacter,Sinorhizobium)6,((Bartonella,Bartonella)100,(Brucella,(Brucella,Brucella)65)99)22)21,Mesorhizobium)40,Agrobacterium)55,(Bradyrhizobium,Rhodopseudomonas)100)100,Bdellovibrio)27,((Leifsonia,(Nocardia,(Mycobacterium,Mycobacterium)100)99)45,Bifidobacterium)64)43,Gloeobacter)100,Symbiobacterium)85,(Thermoanaerobacter,Desulfotalea)75)43)43);
((((Photorhabdus,Yersinia)88,Erwinia)95,(Salmonella,(Escherichia,Shigella)100)100)100,(Pirellula,Pirellula));
((((((Chlamydophila,Chlamydophila)100,Chlamydophila)88,Chlamydophila)100,Parachlamydia)100,Thermoanaerobacter)100,(Thermoplasma,Thermoplasma));
((((Archhaeoglobus,(Methanosarcina,Methanosarcina)100)65,(Halobacterium,Haroarcula)100)25,(Methanopyrus,(Methanobacterium,(Methanobacterium,Methanobacterium)70)100)60)100,(Methylococcus,(Pirellula,Pirellula)100)100);
(Corynebacterium,((Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)100)30)72,Parachlamydia));
(Nitrosomonas,(Shewanella,(((Coxiella,Pseudomonas)56,Acinetobacter)53,(Xylella,(Xanthomonas,Xanthomonas)41)97)36)36);
(Chlorobium,((Brucella,Brucella)100,Methylococcus));
(((Methanobacterium,(Methanobacterium,Methanobacterium)78)55,Methanopyrus)100,(Coxiella,Corynebacterium));
((((((((((Salmonella,(Escherichia,Shigella)100)99,(Photorhabdus,(Yersinia,Yersinia)100)77)52,Erwinia)72,((Vibrio,(Vibrio,(Vibrio,Vibrio)53)51)100,Shewanella)86)69,(Buchnera,Buchnera)97)42,((Haemophilus,Mannheimia)64,Pasteurella)100)64,((Pseudomonas,(Pseudomonas,Pseudomonas)100)93,Acinetobacter)68)15,(((Methylococcus,(Legionella,Coxiella)81)36,(Ralstonia,(((Neisseria,Chromobacterium)95,((Bordetella,(Bordetella,Bordetella)47)100,(Burcholderia,Burcholderia)100)70)48,(Nitrosomonas,Azoarcus)55)39)89)75,Francizella)27)62,Idiomarina)99,(Zymomonas,(((((Sinorhizobium,Mesorhizobium)60,(Brucella,(Brucella,Brucella)76)100)96,(Bradyrhizobium,Rhodopseudomonas)100)46,(Bartonella,Bartonella)100)51,(Rickettsia,(Rickettsia,Rickettsia)86)100)89)89);
(((Brucella,Brucella)97,Brucella)100,(Bordetella,Bordetella));
(Pseudomonas,(Ralstonia,(Azoarcus,Nitrosomonas)63)63);
(Dehalococcoides,(Streptococcus,((Listeria,Listeria)92,(Bacillus,Bacillus)100)50)50);
(Thermoanaerobacter,(Lactobacillus,((Listeria,Listeria)100,((Bacillus,Geobacillus)26,(Oceanobacillus,((Bacillus,Bacillus)100,(Bacillus,Bacillus)100)62)26)77)66)66);
(Buchnera,((((Mycoplasma,Mycoplasma)52,Mycoplasma)100,Mycoplasma)86,((Staphylococcus,Oceanobacillus)55,(Streptococcus,Streptococcus)100)99)99);
(((Streptomyces,Streptomyces)99,(Corynebacterium,(Nocardia,(Mycobacterium,Mycobacterium)100)84)100)96,(Caulobacter,((Bradyrhizobium,(Brucella,(Brucella,Brucella)50)100)93,(Coxiella,(Idiomarina,(Legionella,(((Bordetella,Bordetella)77,Bordetella)100,(Ralstonia,(Burcholderia,Burcholderia)100)98)100)70)54)82)50)50);
(Leptospira,((Yersinia,Yersinia)100,(Burcholderia,Burcholderia)100)100);
(Synechosystis,(Gluconobacter,(Propionibacterium,(Corynebacterium,Corynebacterium)100)98)98);
(Clostridium,((Leifsonia,Tropheryma)78,Streptococcus));
((Symbiobacterium,(Bradyrhizobium,Burcholderia)88)100,(Methanobacterium,Methanosarcina));
(Corynebacterium,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)100)80)80);
(Caulobacter,(((Burcholderia,Burcholderia)100,Chromobacterium)100,Idiomarina));
(Symbiobacterium,(Nocardia,(Escherichia,Streptomyces)73)73);
(Bdellovibrio,((Idiomarina,Neisseria)50,(Chromobacterium,(Ralstonia,(Burcholderia,Burcholderia)100)100)100)100);
(Clostridium,((Bacillus,Bacillus)100,((Streptomyces,Streptomyces)98,(Lactobacillus,((Sinorhizobium,(Burcholderia,Burcholderia)100)27,((Mesorhizobium,(Brucella,(Brucella,Brucella)65)100)98,(Zymomonas,(Yersinia,Yersinia)100)8)2)24)57)77)77);
((((((((Vibrio,Vibrio)86,Vibrio)99,Vibrio)100,(Pseudomonas,(Pseudomonas,Pseudomonas)96)100)86,Idiomarina)50,Bdellovibrio)100,(Erwinia,Deinococcus)100)100,(Pirellula,Pirellula));
((Pseudomonas,(Pseudomonas,Pseudomonas)98)100,(((Nitrosomonas,Neisseria)100,Azoarcus)38,(Bordetella,(Bordetella,Bordetella)92)100)100);
(Nostos,(Sinorhizobium,(Pirellula,Pirellula)100)100);
(Leptospira,(Acinetobacter,((Pseudomonas,(Pseudomonas,Pseudomonas)79)100,((Chromobacterium,Idiomarina)27,(((Silicibacter,Mesorhizobium)62,(Caulobacter,(Bradyrhizobium,Rhodopseudomonas)100)94)99,(Azoarcus,((Ralstonia,(Burcholderia,Burcholderia)100)83,(Bordetella,(Bordetella,Bordetella)67)100)70)72)36)31)53)53);
((Legionella,Zymomonas)99,((((((((Streptococcus,Streptococcus)40,Streptococcus)50,Streptococcus)100,Lactococcus)98,Enterococcus)82,Lactobacillus)67,(Lactobacillus,Lactobacillus)100)96,(Oceanobacillus,(Geobacillus,(Bacillus,Bacillus)100)70)100)100);
((Xanthomonas,Xanthomonas)100,((((Bordetella,Bordetella)97,Bordetella)100,Nitrosomonas)71,(Chromobacterium,(Burcholderia,Burcholderia)100)82)82);
(Haroarcula,((Oceanobacillus,(Bacillus,Bacillus)100)100,(Silicibacter,(Sinorhizobium,Agrobacterium)100)73)73);
(Azoarcus,(Xanthomonas,(Xanthomonas,Xylella)88)88);
(Pyrobaculum,((Aeropyrum,(Sulforobus,Sulforobus)100)36,((((Pyrococcus,Pyrococcus)100,Pyrococcus)80,Thermococcus)100,(Methanopyrus,(Halobacterium,Haroarcula)100)81)97)97);
(((((Porphyromonas,(Bacteroides,Bacteroides)100)100,(((((Haemophilus,Chromobacterium)70,(Salmonella,(Shigella,Escherichia)100)100)77,Propionibacterium)70,(Vibrio,(Shewanella,Vibrio)81)100)78,Desulfovibrio)28)19,(Clostridium,(Treponema,Fusobacterium)100)54)73,((Thermoanaerobacter,Clostridium)98,(Geobacter,Desulfotalea)58)59)100,(Methanobacterium,Methanobacterium));
(Thermotoga,((Listeria,Listeria)100,Bacillus));
(Vibrio,(Azoarcus,(Ralstonia,(Burcholderia,Burcholderia)100)93)93);
((Gloeobacter,Nostos)87,((Streptomyces,Nocardia)91,(Xanthomonas,Xanthomonas)100)100);
(Nostos,((((Bradyrhizobium,Azoarcus)26,Chromobacterium)15,Pseudomonas)10,(Legionella,(Nocardia,(Desulfotalea,(Treponema,Ralstonia)74)74)51)34)34);
((Pyrococcus,Haroarcula)100,(Thermoanaerobacter,Geobacillus));
(Clostridium,(Bacillus,(Bacillus,(Oceanobacillus,(Corynebacterium,Xanthomonas)85)37)99)99);
(Deinococcus,(((Bordetella,Bordetella)66,Bordetella)100,(Azoarcus,(Desulfovibrio,(Yersinia,Yersinia)100)52)40)40);
(Pyrobaculum,(((Nanoarchaeum,Methanosarcina)99,Aeropyrum)68,((Methanopyrus,(Methanobacterium,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)82)98)99)89)47,(Archhaeoglobus,(Sulforobus,Sulforobus)100)55)24)24);
(Archhaeoglobus,((Propionibacterium,Thermoanaerobacter)92,(Nocardia,(Mesorhizobium,(Streptococcus,Bifidobacterium)100)100)76)76);
(Thermus,(((Pyrococcus,Pyrococcus)57,(Pyrococcus,Thermococcus)55)97,Archhaeoglobus));
(Thermotoga,(Geobacter,(Lactobacillus,(Clostridium,(Clostridium,Clostridium)93)100)95)95);
(Desulfovibrio,((Bacillus,Bacillus)100,(Geobacillus,(Bacillus,Bacillus)100)52)52);
((Sulforobus,Sulforobus)91,(Pyrobaculum,(Thermotoga,(Pyrococcus,Pyrococcus)100)98)98);
((Nostos,Gloeobacter)95,(Coxiella,(Ralstonia,(Idiomarina,(Neisseria,(Sinorhizobium,(Azoarcus,Photorhabdus)68)61)98)58)45)45);
(Porphyromonas,(((((Xanthomonas,Xanthomonas)73,Xanthomonas)100,Xylella)99,Acinetobacter)92,Leptospira));
((Coxiella,Legionella)100,(Mycobacterium,Mycobacterium));
(Bacteroides,(((((Mesorhizobium,(Agrobacterium,Sinorhizobium)98)80,(Bordetella,(Bordetella,Bordetella)97)100)82,Silicibacter)100,((Pseudomonas,(Pseudomonas,Pseudomonas)94)100,(Vibrio,(Vibrio,(Vibrio,Vibrio)99)56)99)79)100,Leptospira));
((Mycoplasma,(Mycoplasma,Mycoplasma)100)100,((((((((((Erwinia,(Salmonella,(Escherichia,Shigella)74)61)38,Photorhabdus)46,(Yersinia,Yersinia)100)60,(Pasteurella,Mannheimia)100)40,(Shewanella,Idiomarina)91)85,(Francizella,Coxiella)23)16,((Buchnera,Blochmannia)73,Wigglesworthia)35)21,Buchnera)79,Nitrosomonas)86,(Treponema,((Mycoplasma,Mycoplasma)93,(Wolbachia,(Anaplasma,Ehrlichia)97)100)45)53)53);
(((Pseudomonas,Nocardia)54,((Idiomarina,Legionella)45,Coxiella)93)89,(Corynebacterium,Corynebacterium));
((Bacillus,Bacillus)100,(Silicibacter,Mesorhizobium));
((Coxiella,Ehrlichia)99,(Helicobacter,Wolinella));
((((((Helicobacter,(Campylobacter,Wolinella)58)59,Helicobacter)100,Deinococcus)41,Synechosystis)54,Synechococcus)100,(Halobacterium,Haroarcula));
(Bacillus,(Streptomyces,(Nocardia,Streptomyces)100)100);
(Symbiobacterium,(Thermosynechococcus,(Synechosystis,Nostos)81)81);
(Leptospira,(Bdellovibrio,(Desulfotalea,((((((((Erwinia,(Yersinia,Yersinia)100)36,Photorhabdus)54,(Salmonella,(Shigella,Escherichia)100)100)100,((Vibrio,(Vibrio,Vibrio)76)45,Vibrio)100)100,Shewanella)60,Idiomarina)99,(Pseudomonas,(Pseudomonas,Pseudomonas)58)100)37,(Chromobacterium,((Ralstonia,Azoarcus)75,(Burcholderia,Burcholderia)100)86)100)97)78)78);
(Caulobacter,((Idiomarina,Shewanella)100,(Vibrio,Nitrosomonas)100)100);
(Streptomyces,((((Xanthomonas,Xanthomonas)92,Xanthomonas)81,Xylella)98,Azoarcus));
(Bifidobacterium,((Bacteroides,Bacteroides)34,Porphyromonas));
(Pyrobaculum,(((((((Pyrococcus,Pyrococcus)43,Pyrococcus)77,(Nanoarchaeum,Thermococcus)22)30,Methanobacterium)37,(Methanobacterium,Methanobacterium)93)22,Methanopyrus)25,(Aeropyrum,(((Picrophilus,Sulforobus)38,Archhaeoglobus)14,((Halobacterium,Haroarcula)100,(Methanosarcina,Methanosarcina)100)36)32)20)20);
(Pyrobaculum,(((((((Picrophilus,(Thermoplasma,Thermoplasma)97)100,(Archhaeoglobus,((Methanosarcina,Methanosarcina)100,(Halobacterium,Haroarcula)100)68)100)98,(Methanopyrus,Methanobacterium)78)48,(Methanobacterium,Methanobacterium)100)66,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)92)100)100)61,Nanoarchaeum)93,(Aeropyrum,(Sulforobus,Sulforobus)100)47)47);
(((Oceanobacillus,Geobacillus)73,(Bacillus,Bacillus)100)93,(Deinococcus,(Pirellula,Pirellula)100)100);
((Leptospira,Chlamydophila)67,(Gluconobacter,((Escherichia,(Campylobacter,(Helicobacter,Helicobacter)64)99)62,(Pirellula,Pirellula)100)32)32);
(Bacillus,(Chromobacterium,(Nostos,(Burcholderia,Burcholderia)100)78)78);
(Silicibacter,((Pseudomonas,Pseudomonas)97,Vibrio));
(Fusobacterium,(((((((((((Salmonella,(Shigella,Escherichia)88)100,Erwinia)22,(Yersinia,Yersinia)100)48,Photorhabdus)90,(Mannheimia,Pasteurella)99)73,(Azoarcus,(Pseudomonas,Pseudomonas)99)100)83,Bordetella)42,((Rhodopseudomonas,Mesorhizobium)62,Neisseria)47)73,Ralstonia)96,Geobacter)86,(Campylobacter,(Helicobacter,(Wolinella,Helicobacter)50)81)76)76);
(Methanosarcina,((Streptococcus,Streptococcus)72,(Bdellovibrio,Corynebacterium)44)44);
((Sinorhizobium,Agrobacterium)100,(Bdellovibrio,Geobacter));
(Methanosarcina,(((Desulfovibrio,(Campylobacter,Wolinella)100)100,(Ralstonia,(Shewanella,(Vibrio,(Vibrio,(Vibrio,Vibrio)65)98)100)100)91)93,(Haroarcula,((Symbiobacterium,(Thermus,Pyrobaculum)55)14,((Azoarcus,(Bradyrhizobium,Silicibacter)66)62,(Bordetella,Bordetella)100)92)34)26)26);
(((Methylococcus,(Pseudomonas,(Pseudomonas,Pseudomonas)100)100)88,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)97)83)100)98,(Nitrosomonas,(Ralstonia,(Azoarcus,(Bordetella,(Bordetella,Bordetella)86)100)30)73)73);
(Haroarcula,((Caulobacter,(Silicibacter,(Zymomonas,Gluconobacter)31)49)56,((Rhodopseudomonas,Bradyrhizobium)100,((Agrobacterium,Sinorhizobium)100,(Mesorhizobium,(((Brucella,Brucella)99,Brucella)100,(Bartonella,Bartonella)100)43)63)95)77)77);
(Methanosarcina,(Bacteroides,((((((Bradyrhizobium,(Sinorhizobium,((Pseudomonas,Pseudomonas)84,(Salmonella,(Shigella,Escherichia)100)100)64)92)39,Nocardia)85,(Staphylococcus,((Ralstonia,Acinetobacter)97,(Bordetella,(Bordetella,Bordetella)79)100)100)94)71,Propionibacterium)36,Silicibacter)35,(Agrobacterium,(Gloeobacter,(Lactococcus,Streptococcus)95)94)89)63)63);
(Bacillus,(((Shigella,Escherichia)95,Salmonella)98,Pasteurella));
(Parachlamydia,((((((((Yersinia,Yersinia)100,(Erwinia,(Photorhabdus,(Salmonella,(Escherichia,Shigella)88)99)85)58)56,(Blochmannia,(Buchnera,Buchnera)70)76)59,Shewanella)47,(Acinetobacter,(Pseudomonas,(Pseudomonas,Pseudomonas)81)67)80)57,Rhodopseudomonas)53,Methylococcus)41,Geobacter));
(Campylobacter,(Gluconobacter,((Pseudomonas,Pseudomonas)61,(Bordetella,Bordetella)100)88)88);
(Fusobacterium,((Parachlamydia,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)78)84)96)100,((Chromobacterium,(Bacillus,(Erwinia,(Shigella,Lactobacillus)65)53)71)39,(Leptospira,(Treponema,Treponema)100)42)23)23);
(Fusobacterium,(Acinetobacter,(((((((Rhodopseudomonas,Bradyrhizobium)99,Mesorhizobium)50,Bartonella)60,(Caulobacter,Gluconobacter)45)88,Zymomonas)99,((Chromobacterium,Nitrosomonas)44,((Ralstonia,(Burcholderia,Burcholderia)100)100,(Bordetella,(Bordetella,Bordetella)42)100)100)60)76,(Pseudomonas,(Pseudomonas,Pseudomonas)45)100)91)91);
(Pyrobaculum,((((((Halobacterium,Haroarcula)100,(Methanosarcina,Methanosarcina)100)86,((Pyrococcus,(Pyrococcus,(Thermococcus,Pyrococcus)49)22)96,(Methanobacterium,Methanobacterium)84)44)10,(Methanobacterium,Methanopyrus)53)25,((Nanoarchaeum,(Picrophilus,(Thermoplasma,Thermoplasma)100)100)36,Archhaeoglobus)35)79,(Aeropyrum,(Sulforobus,Sulforobus)100)71)71);
(Chlorobium,(((((((Bordetella,Bordetella)67,Bordetella)100,(Burcholderia,Burcholderia)100)63,Azoarcus)51,Neisseria)99,(Legionella,Acinetobacter)46)91,(((Ehrlichia,Anaplasma)90,(Wolbachia,Wolbachia)100)100,((Campylobacter,(Helicobacter,Wolinella)90)98,(Pirellula,Pirellula)100)52)59)59);
((Nitrosomonas,Caulobacter)100,(Pirellula,Pirellula));
(Chromobacterium,((((Mycobacterium,Mycobacterium)100,Mycobacterium)100,Nocardia)99,(Leifsonia,(Streptomyces,Streptomyces)100)71)71);
(Bacillus,(Chromobacterium,(Vibrio,(Photorhabdus,Bacteroides)84)67)67);
(((((Geobacillus,Bacillus)73,(Bacillus,Bacillus)100)60,(Bacillus,Bacillus)93)62,Oceanobacillus)62,(Symbiobacterium,(Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)37)100)59)59);
(Zymomonas,((((Photorhabdus,(Yersinia,Yersinia)100)100,Erwinia)100,Pasteurella)82,Chromobacterium));
(Yersinia,(((Brucella,Brucella)61,Brucella)100,(Mesorhizobium,Sinorhizobium)100)100);
((((Neisseria,Azoarcus)60,((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)87)84)99,Chromobacterium)28)43,(Ralstonia,((Burcholderia,Burcholderia)100,(Bordetella,Bordetella)100)66)74)89,(Francizella,((Vibrio,(Vibrio,(Vibrio,Vibrio)60)81)100,(Legionella,(Shewanella,Idiomarina)100)94)46)46);
(Leptospira,(Mesorhizobium,(Chromobacterium,((Gluconobacter,(Legionella,Zymomonas)52)28,(Xanthomonas,(Xanthomonas,Xanthomonas)72)100)46)42)42);
(Desulfotalea,((Pseudomonas,(Pseudomonas,Pseudomonas)77)100,((((((((Erwinia,(Yersinia,Yersinia)100)80,Salmonella)86,Escherichia)100,Vibrio)62,Vibrio)95,(Shewanella,Acinetobacter)52)42,Methylococcus)30,(Xanthomonas,(Xanthomonas,Xanthomonas)99)100)37)37);
(Pyrobaculum,((Aeropyrum,(Sulforobus,Sulforobus)100)100,(((((Pyrococcus,Pyrococcus)65,Pyrococcus)56,Thermococcus)100,Nanoarchaeum)100,((Bdellovibrio,(Methanobacterium,Methanobacterium)100)86,((Methanobacterium,Methanopyrus)92,((Haroarcula,Halobacterium)100,(Archhaeoglobus,(Methanosarcina,Methanosarcina)100)56)100)94)96)99)99);
(Gloeobacter,(Pseudomonas,(Caulobacter,(Bdellovibrio,((Vibrio,Pasteurella)92,((Salmonella,(Burcholderia,Ralstonia)76)95,(Bacteroides,Bacteroides)100)35)76)66)53)53);
(Gloeobacter,(Deinococcus,(Salmonella,Acinetobacter)63)63);
(Clostridium,(((((Streptococcus,Streptococcus)97,Streptococcus)81,(Streptococcus,Streptococcus)100)98,Enterococcus)100,(Bacillus,Bacillus)100)100);
(Bradyrhizobium,(Pseudomonas,((Acinetobacter,Pseudomonas)97,(Burcholderia,Burcholderia)100)91)91);
((((((Salmonella,(Shigella,Escherichia)99)100,Erwinia)73,Photorhabdus)94,(Vibrio,(Vibrio,Vibrio)94)100)90,Pasteurella)100,((Staphylococcus,Staphylococcus)100,((Listeria,Listeria)99,(Lactobacillus,(Lactobacillus,Lactobacillus)100)89)70)70);
(Bdellovibrio,((((Mycobacterium,Mycobacterium)100,Mycobacterium)100,Nocardia)96,(Streptomyces,Streptomyces)100)100);
(Bacteroides,(((Pseudomonas,Pseudomonas)80,(Bordetella,(Bordetella,Bordetella)100)100)100,(Rhodopseudomonas,(Xanthomonas,Bradyrhizobium)100)91)91);
(Clostridium,((Streptococcus,Lactococcus)94,Lactobacillus));
(Clostridium,((Burcholderia,Burcholderia)100,((((Bacillus,Bacillus)100,(Bacillus,Bacillus)100)49,Thermoanaerobacter)37,(Bordetella,(Bordetella,Bordetella)99)100)100)100);
(((Neisseria,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)96)82)100)26,(Chromobacterium,(Ralstonia,(Nitrosomonas,Azoarcus)67)21)46)30,(Methylococcus,((Pseudomonas,Pseudomonas)100,(Legionella,(Acinetobacter,(Shewanella,(Vibrio,(Vibrio,(Vibrio,Vibrio)100)93)100)43)18)12)38)38);
(Pyrobaculum,((Methanobacterium,Methanopyrus)56,(Aeropyrum,(Sulforobus,Sulforobus)100)49)49);
(((Thermus,Deinococcus)58,Leifsonia)36,(((Enterococcus,(Lactococcus,(Listeria,Listeria)100)36)68,Streptococcus)95,(Oceanobacillus,(Bacillus,Bacillus)100)64)64);
((((Xanthomonas,Xanthomonas)100,Xanthomonas)100,Photorhabdus)100,(Corynebacterium,Corynebacterium));
(Azoarcus,((((((Photorhabdus,((Yersinia,Yersinia)100,(Erwinia,(Salmonella,(Shigella,Escherichia)100)100)81)78)75,(Wigglesworthia,Blochmannia)73)86,(Mannheimia,Pasteurella)100)44,(Shewanella,Idiomarina)78)21,Vibrio)100,(Xanthomonas,Xanthomonas)93)93);
(Agrobacterium,((((Burcholderia,Burcholderia)100,(Sinorhizobium,Ralstonia)24)58,Vibrio)96,(Pseudomonas,Silicibacter)89)89);
((((Erwinia,(Salmonella,(Escherichia,Shigella)100)100)100,Pseudomonas)99,Vibrio)100,(Chromobacterium,(Burcholderia,Burcholderia)100)100);
(Mycoplasma,(Bartonella,(((Erwinia,Shewanella)71,Bacillus)73,(Xylella,Ralstonia)100)98)98);
(Haroarcula,(Streptomyces,(Oceanobacillus,((Bacillus,Bacillus)100,(Bacillus,Bacillus)100)100)64)64);
(Sinorhizobium,(Xanthomonas,(Erwinia,Pseudomonas)95)95);
(Nostos,(((Corynebacterium,Corynebacterium)100,Corynebacterium)100,Nocardia));
(((((Streptococcus,((Corynebacterium,Campylobacter)33,Pasteurella)39)39,Mycoplasma)70,Staphylococcus)90,Treponema)100,(Streptococcus,(Streptococcus,Streptococcus)46)46);
(((Sulforobus,Sulforobus)100,((Thermococcus,Pyrococcus)51,Pyrococcus)97)86,((Legionella,Bdellovibrio)82,((Methanobacterium,(Methanobacterium,Methanobacterium)92)72,((Picrophilus,(Thermoplasma,Thermoplasma)84)36,(Pirellula,Pirellula)100)15)28)28);
(((((((Streptococcus,Streptococcus)44,Streptococcus)54,Streptococcus)86,Streptococcus)100,Enterococcus)100,Gloeobacter)96,(Clostridium,(Clostridium,Clostridium)65)65);
(Leptospira,(((Azoarcus,Pseudomonas)73,Geobacter)87,Erwinia));
(Clostridium,((Bacteroides,Bacteroides)100,(Pirellula,Pirellula)100)100);
(Chlorobium,(((Methylococcus,Ralstonia)65,Bradyrhizobium)97,Silicibacter));
((Clostridium,Clostridium)100,((Methanobacterium,Methanobacterium)100,((Nanoarchaeum,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)60)99)100)64,(Dehalococcoides,((Methanosarcina,Methanosarcina)100,((Pyrobaculum,(Sulforobus,Sulforobus)100)100,((Thermoanaerobacter,(Methanobacterium,Aeropyrum)71)63,(Picrophilus,(Thermoplasma,Thermoplasma)100)100)54)98)34)33)84)84);
(Thermotoga,((Bacillus,(Fusobacterium,Clostridium)74)79,(Pseudomonas,Ralstonia)100)100);
(Bacteroides,((Agrobacterium,Vibrio)24,((Mesorhizobium,Bradyrhizobium)32,(Chromobacterium,Silicibacter)77)24)24);
(Desulfotalea,(Wolinella,((((Photorhabdus,(Yersinia,Yersinia)100)79,(Salmonella,(Escherichia,Shigella)100)100)100,((Mannheimia,Pasteurella)58,Haemophilus)100)100,(Shewanella,(Idiomarina,(Azoarcus,(Pseudomonas,Pseudomonas)82)100)56)100)99)99);
(Azoarcus,(Silicibacter,(Rhodopseudomonas,Bradyrhizobium)100)100);
((Pseudomonas,((Methylococcus,Pseudomonas)57,Pseudomonas)67)100,(Burcholderia,Burcholderia));
(Fusobacterium,((((Streptococcus,Haemophilus)23,(Streptococcus,Streptococcus)43)52,Streptococcus)22,(Streptococcus,((Lactobacillus,Lactococcus)25,(Lactobacillus,((Vibrio,(Vibrio,Vibrio)38)88,(((Idiomarina,Shewanella)18,(Gluconobacter,Nitrosomonas)39)7,((Chromobacterium,Burcholderia)40,(Ralstonia,((Silicibacter,Caulobacter)57,((Sinorhizobium,Agrobacterium)53,(Mesorhizobium,(((Brucella,Brucella)97,Brucella)100,(Bartonella,Bartonella)100)82)35)72)31)30)15)69)100)34)46)14)14);
(((Pyrococcus,Pyrococcus)100,Thermococcus)62,(Thermotoga,Geobacter));
(Azoarcus,((Xylella,Xanthomonas)100,Xanthomonas));
(Symbiobacterium,((((Bacillus,Bacillus)100,Oceanobacillus)73,Staphylococcus)100,Thermus));
(Pyrobaculum,(Methanopyrus,(Aeropyrum,((Nanoarchaeum,(Archhaeoglobus,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)63)81)99)68)42,(Sulforobus,Sulforobus)100)24)24)24);
((Clostridium,Clostridium)79,((Clostridium,(((Treponema,(Staphylococcus,Staphylococcus)100)42,Parachlamydia)20,(Listeria,Listeria)100)13)37,(Symbiobacterium,(((((Bacillus,(Geobacillus,(Bacillus,Bacillus)100)28)33,(Bacillus,Bacillus)94)48,Oceanobacillus)60,Thermoanaerobacter)41,(Pirellula,Pirellula)100)25)36)36);
((Streptococcus,Streptococcus)100,((Azoarcus,(Bordetella,(Bordetella,Bordetella)62)100)73,(((Bradyrhizobium,Rhodopseudomonas)100,((Silicibacter,Zymomonas)18,Ralstonia)9)6,(((((Yersinia,Yersinia)100,(Salmonella,(Shigella,Escherichia)100)100)100,((Pasteurella,Mannheimia)100,Shewanella)35)42,Acinetobacter)18,(((Pseudomonas,(Pseudomonas,Pseudomonas)99)98,(((Brucella,(Brucella,Brucella)89)100,(Agrobacterium,Sinorhizobium)57)36,Mesorhizobium)99)15,((Pirellula,Pirellula)100,(Deinococcus,((Corynebacterium,Corynebacterium)100,(Nocardia,(Mycobacterium,Mycobacterium)100)96)100)33)20)3)3)8)8);
(Gloeobacter,((((Pseudomonas,Acinetobacter)38,Pseudomonas)97,(Xanthomonas,Xanthomonas)91)100,Gluconobacter));
(Thermus,((((Pyrococcus,Pyrococcus)87,Pyrococcus)99,Archhaeoglobus)75,Thermococcus));
(Pyrobaculum,((Sulforobus,(Aeropyrum,Sulforobus)40)84,(Nanoarchaeum,(((Methanobacterium,(Methanobacterium,Methanobacterium)100)38,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)41)72)100)14,((Picrophilus,(Thermoplasma,Thermoplasma)83)100,((Methanopyrus,(Halobacterium,Haroarcula)100)74,(Archhaeoglobus,(Methanosarcina,Methanosarcina)100)66)42)15)17)62)62);
(Archhaeoglobus,((Aeropyrum,(Anaplasma,Helicobacter)94)78,Pyrobaculum));
(Streptomyces,((Xanthomonas,Bradyrhizobium)100,Methylococcus));
(Nocardia,(Xanthomonas,(Desulfotalea,Shewanella)81)81);
(Thermotoga,(Symbiobacterium,((Nocardia,Streptomyces)91,(Mycobacterium,Mycobacterium)100)100)100);
(((Rhodopseudomonas,Bradyrhizobium)100,(Mesorhizobium,(Sinorhizobium,Agrobacterium)100)93)39,(((Caulobacter,(Xanthomonas,Chromobacterium)49)45,((Brucella,Brucella)81,Brucella)100)52,(Vibrio,Vibrio)100)100);
(Pyrobaculum,(Aeropyrum,(Sulforobus,Sulforobus)99)99);
(Gloeobacter,(((((Pseudomonas,Pseudomonas)78,Pseudomonas)93,((Vibrio,(Vibrio,Vibrio)83)100,Shewanella)81)79,Idiomarina)75,((Chlorobium,Thermus)48,(Azoarcus,(Methylococcus,((Legionella,Xanthomonas)83,(Pirellula,Pirellula)100)69)23)79)77)77);
(Methanosarcina,(((Caulobacter,Corynebacterium)38,Vibrio)57,((Desulfovibrio,Rhodopseudomonas)94,((((Deinococcus,Sinorhizobium)37,(Nostos,((Agrobacterium,Pseudomonas)49,(Burcholderia,Burcholderia)100)53)31)19,Synechococcus)26,(Pirellula,Pirellula)100)33)71)71);
(Haroarcula,((Gluconobacter,Thermus)85,(Nocardia,Streptomyces)100)100);
(Thermotoga,((((((Burcholderia,(Ralstonia,Salmonella)36)61,(Xanthomonas,(Xanthomonas,Xanthomonas)100)100)54,Xylella)79,Pseudomonas)96,Chromobacterium)100,(Pirellula,Pirellula)100)100);
(Symbiobacterium,((Synechococcus,Bifidobacterium)26,((Bdellovibrio,Chlorobium)30,(Legionella,(((Coxiella,(Xylella,(Xanthomonas,Xanthomonas)100)100)40,(Shewanella,(Pseudomonas,Pseudomonas)100)28)15,(Burcholderia,Burcholderia)100)28)92)24)24);
(((Streptococcus,Streptococcus)62,Streptococcus)100,(Methanosarcina,Methanosarcina));
((Thermococcus,(Methanobacterium,(Pyrococcus,(Pyrococcus,Pyrococcus)55)56)35)98,((Aeropyrum,Pyrobaculum)66,(Methanopyrus,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)43)80)100)36)36);
((Pyrococcus,(Pyrococcus,Thermococcus)99)97,(Deinococcus,(Dehalococcoides,(Photorhabdus,(Picrophilus,(Bordetella,Bordetella)100)69)37)41)41);
(Zymomonas,(Chromobacterium,(((Bordetella,Bordetella)58,Bordetella)100,(Vibrio,(Burcholderia,Burcholderia)100)46)70)70);
((Pseudomonas,Pseudomonas)79,(Ralstonia,(Methylococcus,Nitrosomonas)100)100);
(Halobacterium,((Xanthomonas,Chromobacterium)48,(((Idiomarina,Shewanella)90,(Buchnera,Blochmannia)100)100,((Geobacter,(Azoarcus,(Ralstonia,(Burcholderia,Burcholderia)100)93)100)26,(Bdellovibrio,(Bacteroides,Bacteroides)100)21)59)56)56);
(Thermosynechococcus,(Idiomarina,(Shewanella,((Gluconobacter,(((Pseudomonas,Pseudomonas)100,((Bordetella,Bordetella)66,Bordetella)100)66,(Xanthomonas,Xanthomonas)100)47)48,((Burcholderia,(Caulobacter,(Rhodopseudomonas,Bradyrhizobium)100)50)35,(Acinetobacter,(Xylella,(Nitrosomonas,(Escherichia,Shigella)100)47)6)2)9)26)100)100);
(Clostridium,((Bacteroides,Bacteroides)100,(Pirellula,Pirellula)100)100);
(Desulfovibrio,(((((((Pseudomonas,Pseudomonas)77,Pseudomonas)99,((Chromobacterium,Azoarcus)51,(Ralstonia,(Burcholderia,Burcholderia)100)99)72)30,(Neisseria,(Rhodopseudomonas,Bradyrhizobium)100)56)21,Nitrosomonas)28,((Photorhabdus,(Erwinia,(Yersinia,Yersinia)100)66)52,(Salmonella,(Escherichia,Shigella)100)89)96)35,((Shewanella,(Desulfotalea,((Vibrio,Vibrio)48,(Vibrio,Vibrio)82)82)93)100,((Mesorhizobium,(Sinorhizobium,Agrobacterium)73)81,(Brucella,(Brucella,Brucella)89)98)89)100)100);
((Synechococcus,(((Thermosynechococcus,Synechosystis)45,Nostos)44,Gloeobacter)37)30,((Silicibacter,Acinetobacter)50,(((Thermus,Caulobacter)31,(Bradyrhizobium,((Bartonella,Bartonella)100,((Agrobacterium,Mesorhizobium)22,(Sinorhizobium,((Brucella,Brucella)27,Brucella)100)44)20)86)47)12,(((Treponema,Treponema)97,((Anaplasma,Ehrlichia)94,Zymomonas)55)28,(Helicobacter,Wolinella)100)3)7)7);
(((Clostridium,Thermoanaerobacter)82,Symbiobacterium)100,(Oceanobacillus,(Bacillus,((Geobacillus,(Bacillus,Bacillus)99)67,(Bacillus,Bacillus)100)39)96)96);
(Sinorhizobium,((Rhodopseudomonas,Bordetella)100,(Burcholderia,Burcholderia)100)100);
((((Bacillus,Bacillus)100,(Oceanobacillus,Bacillus)55)95,Staphylococcus)100,(Streptomyces,Streptomyces));
((Methanobacterium,(Methanosarcina,Methanosarcina)99)100,((Archhaeoglobus,Symbiobacterium)98,(Rhodopseudomonas,Bradyrhizobium)100)100);
((Nocardia,(Streptomyces,Streptomyces)100)86,((((Vibrio,Pseudomonas)88,(Ralstonia,(Burcholderia,Burcholderia)100)100)98,Mesorhizobium)91,((Agrobacterium,Bradyrhizobium)100,(Silicibacter,Bordetella)100)66)66);
(Symbiobacterium,((Helicobacter,Thermoanaerobacter)57,((((Lactococcus,(Streptococcus,Streptococcus)100)85,(Lactobacillus,Enterococcus)75)46,((Streptomyces,Streptomyces)100,((Vibrio,Vibrio)80,(Vibrio,Vibrio)39)100)55)61,((Bacillus,Bacillus)100,(Salmonella,(Shigella,Escherichia)100)100)100)30)30);
((((((Methanosarcina,Methanosarcina)100,((Methanobacterium,Methanobacterium)70,Methanobacterium)61)21,(Thermoplasma,Thermoplasma)100)15,Archhaeoglobus)45,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)62)53)100)53,((Pyrobaculum,(Sulforobus,Sulforobus)100)39,((Halobacterium,Haroarcula)100,(((((((((Staphylococcus,Staphylococcus)100,(Enterococcus,Lactococcus)98)87,((Streptococcus,(Streptococcus,(Streptococcus,Streptococcus)52)24)45,Streptococcus)100)51,(Listeria,Listeria)100)44,(Lactobacillus,(Lactobacillus,Lactobacillus)100)50)26,Oceanobacillus)74,Nocardia)84,((Yersinia,Yersinia)100,(Bacillus,Burcholderia)100)99)72,(Borrelia,Borrelia)100)76)100)100);
((Methanobacterium,(Methanobacterium,Methanobacterium)75)97,((Methanopyrus,Streptomyces)50,(Archhaeoglobus,((Methanosarcina,Methanosarcina)100,(Chromobacterium,(Methylococcus,(Pirellula,Pirellula)100)98)60)39)56)56);
(Aquifex,(((((Shigella,Escherichia)99,Salmonella)100,(Pseudomonas,Pseudomonas)90)100,Campylobacter)64,Geobacter));
(Caulobacter,(Acinetobacter,(Idiomarina,(Pseudomonas,Pseudomonas)100)97)97);
(Xanthomonas,(Methanopyrus,(Methanosarcina,Methanosarcina)83)83);
((Nitrosomonas,(Coxiella,Methylococcus)100)97,((Wolbachia,(Ehrlichia,Anaplasma)73)61,(Rickettsia,(Rickettsia,Rickettsia)100)100)100);
(((Pseudomonas,Pseudomonas)71,Pseudomonas)100,(Ralstonia,(Burcholderia,Burcholderia)100)100);
(Desulfovibrio,(Methylococcus,((((((((Yersinia,Yersinia)100,(Salmonella,(Shigella,Escherichia)95)100)43,Erwinia)50,Photorhabdus)97,((Mannheimia,Pasteurella)62,Haemophilus)100)99,(Vibrio,(Vibrio,(Vibrio,Vibrio)84)99)100)86,(Shewanella,Idiomarina)65)92,(Legionella,(Coxiella,((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)82)94)100,(Azoarcus,((Neisseria,Chromobacterium)100,((Ralstonia,(Burcholderia,Burcholderia)100)86,(Bordetella,(Bordetella,Bordetella)89)100)85)32)100)21)12)24)56)56);
(((Bacillus,Bacillus)100,(Enterococcus,(Geobacillus,(Bacillus,Bacillus)85)73)54)91,(Leptospira,(Bacillus,((Bdellovibrio,Geobacter)32,((Dehalococcoides,Desulfovibrio)99,((Wolinella,Campylobacter)96,((((Coxiella,((Pseudomonas,(Pseudomonas,Pseudomonas)98)99,(Acinetobacter,(Legionella,((Shewanella,((Photorhabdus,((Salmonella,(Shigella,Escherichia)100)100,(Erwinia,(Yersinia,Yersinia)100)47)36)51,(Pasteurella,(Mannheimia,Haemophilus)100)96)98)35,(Vibrio,(Vibrio,(Vibrio,Vibrio)100)65)49)50)69)46)32)17,(((Bordetella,Bordetella)52,Bordetella)100,(Xanthomonas,(Xanthomonas,Xanthomonas)86)100)100)71,((Ralstonia,(Burcholderia,Burcholderia)100)100,(Nitrosomonas,(Azoarcus,Chromobacterium)22)37)100)73,(((Thermosynechococcus,Nostos)96,(Gloeobacter,(Prochlorococcus,Synechococcus)84)38)100,((Nocardia,(Mycobacterium,Mycobacterium)100)95,(Leifsonia,(Streptomyces,Streptomyces)96)61)100)68)14)26)28)55)54)54);
(Symbiobacterium,((Bacillus,Bacillus)70,(Yersinia,(Shigella,Photorhabdus)99)100)100);
(Clostridium,(Photorhabdus,(Salmonella,(Escherichia,Shigella)100)100)100);
(Archhaeoglobus,(Desulfotalea,(Leptospira,((Corynebacterium,Corynebacterium)100,(Pirellula,Pirellula)100)90)34)34);
(((Erwinia,Pasteurella)74,(Bradyrhizobium,Mesorhizobium)84)100,(Pirellula,Pirellula));
((Pirellula,Pirellula)100,(Deinococcus,Propionibacterium));
(Bradyrhizobium,(Azoarcus,(Burcholderia,(Pseudomonas,Pseudomonas)100)66)66);
(Thermoplasma,(Gluconobacter,(Bacillus,(Pseudomonas,(Escherichia,((Bacteroides,Bacteroides)100,(Yersinia,Yersinia)100)89)58)34)51)51);
(Haroarcula,((((((Mannheimia,(Chromobacterium,(Xanthomonas,Xanthomonas)100)66)96,Desulfovibrio)76,(Chlorobium,(Methylococcus,Leptospira)43)84)62,(Symbiobacterium,Thermus)100)98,((Streptococcus,Streptococcus)96,(Azoarcus,Bacillus)97)100)100,(Thermotoga,Methanosarcina)50)50);
(Gloeobacter,((Bacteroides,Bacteroides)100,(Streptomyces,Streptomyces)100)100);
(((((((Helicobacter,(Shigella,Escherichia)89)74,Salmonella)100,(Bdellovibrio,((Yersinia,Yersinia)100,Chromobacterium)15)23)33,Erwinia)84,Xanthomonas)49,Gluconobacter)100,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100);
(Deinococcus,((Sinorhizobium,Mesorhizobium)98,Bradyrhizobium));
(Clostridium,((((Listeria,Listeria)100,Clostridium)44,Clostridium)38,(((Streptococcus,Streptococcus)100,Enterococcus)43,(((Oceanobacillus,((Bacillus,Bacillus)100,(Geobacillus,Bacillus)38)74)50,(Bacillus,Bacillus)100)59,(Staphylococcus,Staphylococcus)100)100)55)55);
(Symbiobacterium,((Mycobacterium,(Mycobacterium,Mycobacterium)100)100,((((Geobacillus,(Bacillus,Bacillus)100)90,Oceanobacillus)50,Bacillus)100,(Bacillus,Bacillus)100)73)73);
(Streptomyces,((((Chromobacterium,Erwinia)34,Mesorhizobium)52,Sinorhizobium)43,Silicibacter));
((((Bdellovibrio,Xylella)100,Nocardia)100,Agrobacterium)100,(Pirellula,Pirellula));
(Silicibacter,((Burcholderia,Burcholderia)100,Pseudomonas));
((Oceanobacillus,(Bacillus,Bacillus)99)96,(Thermus,(((((Legionella,Francizella)98,Nostos)95,Bdellovibrio)97,Acinetobacter)74,(Pirellula,Pirellula)100)100)100);
(((Bordetella,(Bordetella,Bordetella)95)100,(Silicibacter,Azoarcus)96)100,(Mycobacterium,(Streptomyces,(Nocardia,(Mycobacterium,Mycobacterium)100)98)87)87);
(Thermotoga,(Rickettsia,(Rickettsia,Rickettsia)79)79);
(Thermotoga,((((Streptococcus,Enterococcus)64,(Lactobacillus,Streptococcus)34)68,(Propionibacterium,Thermosynechococcus)44)55,(Silicibacter,(Mesorhizobium,(Sinorhizobium,(Brucella,(Brucella,Brucella)99)100)53)90)100)100);
((Bacteroides,Bacteroides)100,(((((Xanthomonas,Xanthomonas)43,Xanthomonas)100,Idiomarina)100,Acinetobacter)63,(Pirellula,Pirellula)100)100);
(Caulobacter,((Escherichia,Ralstonia)58,(Xanthomonas,Xanthomonas)100)100);
(((Helicobacter,(Streptococcus,((Streptococcus,Streptococcus)77,Streptococcus)80)99)36,(Staphylococcus,(Clostridium,(Parachlamydia,(Bacillus,Bacillus)100)38)3)13)100,(Methanosarcina,Methanosarcina));
((Porphyromonas,(Bacteroides,Bacteroides)100)100,((Desulfotalea,Parachlamydia)98,(Pirellula,Pirellula)100)100);
(Thermoanaerobacter,((Vibrio,(Vibrio,(Vibrio,Vibrio)63)92)88,(((Mannheimia,(Haemophilus,Pasteurella)90)99,Shewanella)38,(Erwinia,((Salmonella,(Escherichia,Shigella)100)100,(Photorhabdus,(Yersinia,Yersinia)100)99)64)88)32)32);
(Pyrococcus,(((Nostos,(Bacteroides,Prochlorococcus)66)78,Nocardia)49,(Campylobacter,(Bradyrhizobium,(Vibrio,Vibrio)100)87)65)65);
((Thermoplasma,Thermoplasma)100,((Synechococcus,(Synechosystis,(Thermosynechococcus,Nostos)50)82)96,(((Shewanella,((Bordetella,(Bordetella,Bordetella)84)100,((Yersinia,Yersinia)100,(Burcholderia,Burcholderia)100)92)98)61,(Vibrio,(Vibrio,Vibrio)40)100)100,((((Corynebacterium,(Corynebacterium,Corynebacterium)100)96,(Nocardia,(Mycobacterium,Mycobacterium)100)95)100,(Propionibacterium,(Streptomyces,Streptomyces)100)80)100,((Nitrosomonas,Symbiobacterium)26,(Bacillus,(Oceanobacillus,(Bacillus,Bacillus)100)51)56)37)38)42)42);
(Oceanobacillus,(Parachlamydia,(Pirellula,Pirellula)100)100);
(Sulforobus,(Lactococcus,(Bacillus,(Lactobacillus,(Helicobacter,(Symbiobacterium,((Gloeobacter,Synechococcus)41,(Caulobacter,(Leifsonia,(Streptomyces,(Propionibacterium,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)100)41)45)100)87)29)25)22)22)20)20);
((Clostridium,Clostridium)59,(Vibrio,(Bacteroides,Bacteroides)100)100);
(((Caulobacter,Sinorhizobium)71,(Mycobacterium,Mycobacterium)100)100,(Bacillus,Bacillus));
(Sinorhizobium,(Pseudomonas,(Pseudomonas,Pseudomonas)35)35);
(Chlorobium,((((Photorhabdus,(Salmonella,(Shigella,Escherichia)100)95)33,Erwinia)44,Buchnera)99,Methylococcus));
(Fusobacterium,(Shewanella,(Leptospira,(Agrobacterium,(Bacteroides,(((Salmonella,(Shigella,Escherichia)100)100,(Yersinia,Yersinia)100)99,(Pseudomonas,(Xanthomonas,Xanthomonas)100)49)93)56)57)93)93);
(((Clostridium,Clostridium)100,Thermoanaerobacter)99,((Treponema,Treponema)100,(Borrelia,Borrelia)100)100);
(Clostridium,((Chromobacterium,Bdellovibrio)47,(Bacillus,(Vibrio,(Francizella,(Shewanella,(Buchnera,(Buchnera,((Salmonella,(Shigella,Escherichia)69)99,(Yersinia,Yersinia)100)98)70)100)85)61)27)49)49);
((((((Pseudomonas,Pseudomonas)86,Pseudomonas)47,Idiomarina)79,Legionella)99,Azoarcus)98,((Mesorhizobium,Agrobacterium)66,(Bradyrhizobium,Rhodopseudomonas)100)100);
(Haroarcula,(Acinetobacter,((Caulobacter,((Prochlorococcus,Synechococcus)90,((Pirellula,Pirellula)100,(Synechosystis,(Francizella,(Nostos,Thermosynechococcus)60)44)51)53)24)23,(Silicibacter,(Nocardia,(Mycobacterium,Mycobacterium)100)100)36)32)32);
((Burcholderia,Bordetella)100,(Pirellula,Pirellula));
((Streptomyces,Leifsonia)82,(Rhodopseudomonas,Bdellovibrio));
(Leptospira,((Parachlamydia,Bdellovibrio)59,(Pirellula,Pirellula)100)100);
(Mycoplasma,((Burcholderia,Burcholderia)100,(((((Xanthomonas,Xanthomonas)57,Xanthomonas)100,Xylella)100,(Bacteroides,Bacteroides)100)89,(Escherichia,Enterococcus)100)100)100);
(Clostridium,((Bacteroides,Bacteroides)91,(Desulfotalea,(Treponema,(((Vibrio,Vibrio)51,(Shewanella,Vibrio)32)99,(Erwinia,(Salmonella,(Escherichia,Shigella)100)99)96)35)45)58)58);
(Pyrobaculum,((Aeropyrum,(Sulforobus,Sulforobus)100)45,(Nanoarchaeum,((Methanobacterium,Methanobacterium)87,(((Archhaeoglobus,(Picrophilus,(Thermoplasma,Thermoplasma)98)100)18,((Halobacterium,Haroarcula)100,(Methanosarcina,Methanosarcina)100)85)38,((Methanopyrus,Methanobacterium)41,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)56)100)100)47)18)60)63)63);
(((Vibrio,Lactobacillus)58,Treponema)100,(Streptococcus,(Streptococcus,Streptococcus)100)100);
(Haroarcula,(Deinococcus,((Streptomyces,Streptomyces)100,(Nocardia,(Mycobacterium,Mycobacterium)100)98)94)94);
(Nostos,((Brucella,(Brucella,Brucella)67)100,((((Silicibacter,(Bradyrhizobium,Rhodopseudomonas)38)84,((Agrobacterium,Mesorhizobium)51,Sinorhizobium)96)43,((Pseudomonas,(Pseudomonas,Pseudomonas)97)100,(Burcholderia,Burcholderia)100)100)33,(Propionibacterium,((Streptomyces,Streptomyces)96,(Nocardia,(Corynebacterium,(Mycobacterium,Mycobacterium)100)71)53)69)31)33)33);
(((Prochlorococcus,Synechococcus)100,(Nostos,Thermosynechococcus)87)97,((((((((Salmonella,((Vibrio,(Vibrio,Vibrio)75)93,(Vibrio,Photorhabdus)58)96)65,Shewanella)83,Idiomarina)100,Francizella)35,(Pseudomonas,(Pseudomonas,Pseudomonas)69)93)49,Acinetobacter)77,Legionella)100,(Pirellula,Pirellula)100)100);
((Methanobacterium,Methanobacterium)99,(Aquifex,((Bacillus,Bacillus)100,(Corynebacterium,(Staphylococcus,Staphylococcus)100)76)67)67);
((Methanosarcina,Methanosarcina)100,(Chlorobium,Dehalococcoides));
((Bacillus,(Listeria,Listeria)100)66,(((Bacillus,Bacillus)100,((Erwinia,(Salmonella,(Escherichia,Shigella)60)100)79,(Yersinia,Yersinia)100)99)69,(Enterococcus,(Acinetobacter,(Lactococcus,Lactobacillus)90)58)87)87);
(Clostridium,((Azoarcus,Deinococcus)75,(Streptomyces,Streptomyces)100)100);
((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)81)92)100,((Nitrosomonas,Idiomarina)60,(Burcholderia,Ralstonia)100)100);
(Nostos,((((Burcholderia,Burcholderia)100,(Pseudomonas,Pseudomonas)90)73,(Brucella,(Brucella,Brucella)64)100)89,((((Corynebacterium,(Corynebacterium,Corynebacterium)100)98,(Mycobacterium,Mycobacterium)100)33,Nocardia)80,((Silicibacter,Bradyrhizobium)100,(Propionibacterium,(Porphyromonas,(Streptomyces,Streptomyces)100)89)57)79)68)68);
(Fusobacterium,(Bacillus,(Legionella,(Chromobacterium,(Erwinia,(Yersinia,Yersinia)100)100)100)72)72);
(Nostos,((Methylococcus,Bradyrhizobium)78,Rhodopseudomonas));
(Geobacillus,((((Caulobacter,Thermus)62,Corynebacterium)100,(Xanthomonas,Dehalococcoides)82)83,Xanthomonas));
((Picrophilus,(Sulforobus,Sulforobus)79)48,(((Pyrobaculum,Thermotoga)32,Methanobacterium)61,(((((((((Synechosystis,(((Nostos,Gloeobacter)37,Thermosynechococcus)32,(Prochlorococcus,Synechococcus)99)16)99,((Caulobacter,((Bartonella,Bartonella)100,(((Brucella,Brucella)86,Brucella)100,(Sinorhizobium,Agrobacterium)99)34)94)62,Silicibacter)96)41,((Geobacter,Desulfotalea)19,Bdellovibrio)8)9,((Pseudomonas,(Pseudomonas,Pseudomonas)70)100,(((((Pasteurella,Haemophilus)61,Mannheimia)100,(((Salmonella,(Escherichia,Shigella)100)100,(Photorhabdus,(Erwinia,(Yersinia,Yersinia)100)66)95)71,((Vibrio,Vibrio)76,(Vibrio,Vibrio)25)79)48)42,Idiomarina)79,Shewanella)63)73)36,Desulfovibrio)98,Bacillus)42,Symbiobacterium)28,(Thermoanaerobacter,((Clostridium,Clostridium)36,Clostridium)96)98)25,((Thermus,Aeropyrum)14,(Aquifex,(Pyrococcus,Thermococcus)100)34)35)81)81);
(Gloeobacter,(Methylococcus,(Mesorhizobium,(Xanthomonas,(Erwinia,Azoarcus)62)46)46)46);
(Pyrobaculum,(Aeropyrum,((((((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)43)74)100,(Methanobacterium,Methanobacterium)100)19,Methanobacterium)15,((Picrophilus,(Thermoplasma,Thermoplasma)65)100,(Methanosarcina,Methanosarcina)100)44)87,Methanopyrus)56,(Sulforobus,Sulforobus)100)81)81);
((Bacillus,(Geobacillus,(Bacillus,Bacillus)100)70)99,((((((((Methylococcus,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)62)90)100)39,(((Burcholderia,Burcholderia)100,(Ralstonia,(Bordetella,(Bordetella,Bordetella)89)100)62)58,Azoarcus)54)9,(Nitrosomonas,Chromobacterium)34)2,(((Rickettsia,(Rickettsia,Rickettsia)78)100,((Zymomonas,Silicibacter)34,Caulobacter)41)24,(((Sinorhizobium,Agrobacterium)73,(Mesorhizobium,(Brucella,(Brucella,Brucella)66)100)98)89,(Bradyrhizobium,Rhodopseudomonas)100)94)61)3,((Shewanella,((Mannheimia,(Pasteurella,Haemophilus)77)99,(Vibrio,(Vibrio,Vibrio)100)81)90)91,(Coxiella,Legionella)84)56)29,((Geobacter,Deinococcus)7,((Tropheryma,(Bifidobacterium,(Leifsonia,(Streptomyces,Streptomyces)100)84)36)30,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)100)59)14)10,((Synechococcus,(Thermosynechococcus,Nostos)96)77,Dehalococcoides)26)34,(Pirellula,Pirellula)100)100);
(Lactobacillus,((Desulfovibrio,Legionella)68,(Photorhabdus,Chromobacterium)70)70);
((Vibrio,Salmonella)96,(Mycoplasma,Mycoplasma));
(Desulfotalea,((((Neisseria,((Burcholderia,Burcholderia)100,(Ralstonia,Pseudomonas)49)100)76,Chromobacterium)88,Shewanella)38,(Escherichia,Salmonella)100)100);
(Pyrobaculum,((Sulforobus,Sulforobus)97,((Methanopyrus,(Pyrococcus,(Pyrococcus,(Thermococcus,Pyrococcus)64)50)100)50,((Archhaeoglobus,((Methanosarcina,Methanosarcina)100,(Methanobacterium,(Methanobacterium,Methanobacterium)91)55)49)72,(Picrophilus,(Thermoplasma,Thermoplasma)100)96)75)89)89);
(Methanopyrus,(Symbiobacterium,((((Nitrosomonas,Bdellovibrio)100,(((Treponema,(Thermoanaerobacter,(Clostridium,((Aquifex,(Campylobacter,(Helicobacter,Wolinella)100)66)48,Desulfotalea)12)8)3)10,Geobacter)18,Enterococcus)24)22,((Sinorhizobium,(Azoarcus,(Burcholderia,Burcholderia)100)49)97,((((Photorhabdus,(Yersinia,Yersinia)100)46,((Mannheimia,Pasteurella)99,(Salmonella,(Shigella,Escherichia)77)100)48)96,(Bordetella,(Pseudomonas,(Pseudomonas,Pseudomonas)32)80)100)74,Shewanella)100)98)15,(Porphyromonas,Haroarcula)29)5)5);
(Geobacter,(Xanthomonas,(Azoarcus,Xanthomonas)98)98);
(((Rhodopseudomonas,(Silicibacter,(Pseudomonas,(Vibrio,(Vibrio,(Vibrio,Vibrio)98)80)100)99)37)76,(Deinococcus,Gloeobacter)94)100,(Pyrococcus,Thermococcus));
((((Geobacter,(Pirellula,Pirellula)100)100,(Streptomyces,Streptomyces)100)51,Bacillus)100,(Methanosarcina,Methanosarcina));
(Pyrobaculum,(Methanopyrus,(Methanobacterium,((Methanosarcina,Methanosarcina)100,((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)99)99)81,(Archhaeoglobus,((Methanobacterium,Methanobacterium)97,(Sulforobus,Sulforobus)100)73)26)31)22)52)52);
(Mesorhizobium,(Legionella,(Burcholderia,Nitrosomonas)40)40);
(Listeria,(((Mycoplasma,Mycoplasma)100,Lactobacillus)100,Listeria));
(Methanosarcina,((Agrobacterium,Mesorhizobium)50,((Bdellovibrio,Coxiella)20,Geobacter)11));
(Pyrobaculum,((Pyrococcus,(Thermococcus,(Pyrococcus,Pyrococcus)39)35)99,(((((Picrophilus,(Thermoplasma,Thermoplasma)86)99,Archhaeoglobus)20,(((Methanobacterium,(Methanosarcina,Methanosarcina)100)37,Methanobacterium)4,Methanobacterium)15)4,(Methanopyrus,(Halobacterium,Haroarcula)100)15)1,(Aeropyrum,(Nanoarchaeum,(Sulforobus,Sulforobus)99)82)38)30)30);
(Clostridium,((Bacillus,Bacillus)68,((Bacillus,Bacillus)39,(Listeria,Listeria)100)36)36);
((Bradyrhizobium,(Agrobacterium,(Erwinia,(Yersinia,Yersinia)100)87)100)94,(Thermus,(Streptomyces,Streptomyces)100)100);
(Wolbachia,(Propionibacterium,((Nocardia,(Mycobacterium,Mycobacterium)100)94,(Streptomyces,Streptomyces)100)65)65);
(Caulobacter,(((Xanthomonas,Xanthomonas)89,Xanthomonas)75,Xylella));
(Pyrobaculum,((Sulforobus,Sulforobus)100,Aeropyrum));
((Gloeobacter,(Synechosystis,Nostos)98)54,(((Bradyrhizobium,Rhodopseudomonas)100,(Burcholderia,Burcholderia)100)38,((Prochlorococcus,Synechococcus)77,(Silicibacter,(Methylococcus,(Bdellovibrio,((Idiomarina,Shewanella)99,(Xanthomonas,(Xanthomonas,Xanthomonas)78)100)74)85)50)32)28)28);
(Deinococcus,((Agrobacterium,Sinorhizobium)61,((Brucella,(Brucella,Brucella)87)100,(Mesorhizobium,(Bartonella,Bartonella)100)45)84)84);
((Thermococcus,Pyrococcus)100,((((((((Pseudomonas,(Ralstonia,(Bordetella,Bordetella)100)100)76,(Campylobacter,(Neisseria,(Haemophilus,Mannheimia)88)95)67)52,Gluconobacter)64,(Caulobacter,((Mycobacterium,Mycobacterium)100,(Propionibacterium,Corynebacterium)47)99)93)82,Pseudomonas)65,(Legionella,Coxiella)78)76,(Xylella,((Xanthomonas,Xanthomonas)71,Xanthomonas)97)100)38,(Halobacterium,((Clostridium,Thermoanaerobacter)72,(Porphyromonas,(Bacteroides,Bacteroides)100)100)80)72)72);
(Symbiobacterium,(Desulfovibrio,(Geobacter,(Acinetobacter,(((Legionella,Coxiella)42,Methylococcus)42,((((((((Salmonella,(Escherichia,Shigella)100)100,(Photorhabdus,Erwinia)50)34,(Yersinia,Yersinia)100)80,((Idiomarina,(Pasteurella,Haemophilus)93)45,Shewanella)48)31,(Vibrio,(Vibrio,(Vibrio,Vibrio)99)83)93)37,(Blochmannia,Buchnera)54)68,Streptococcus)27,(((Neisseria,Chromobacterium)100,(Pseudomonas,(Pseudomonas,Pseudomonas)80)99)13,(Zymomonas,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)53)78)99)83)11)2)2)96)78)78);
(((((((Nostos,Vibrio)59,(Geobacillus,(Bacillus,Bacillus)99)86)70,(((Streptococcus,Streptococcus)99,(Streptococcus,Streptococcus)100)98,(Bacteroides,Bacteroides)100)88)37,Lactococcus)81,(Agrobacterium,(Shigella,Escherichia)100)100)100,Vibrio)100,(Pyrococcus,Thermococcus));
(Thermoanaerobacter,((((((Bacillus,Bacillus)58,Oceanobacillus)49,(Symbiobacterium,(Propionibacterium,(Nocardia,Streptomyces)93)99)39)83,Vibrio)49,Prochlorococcus)100,(Bacillus,Bacillus)100)100);
((Thermoanaerobacter,Symbiobacterium)86,((Thermus,Deinococcus)40,(Gluconobacter,Caulobacter)100)100);
((Symbiobacterium,((Thermoanaerobacter,Clostridium)49,(Clostridium,Clostridium)87)92)92,(Oceanobacillus,(Bacillus,((Geobacillus,(Bacillus,Bacillus)100)86,(Bacillus,Bacillus)100)49)69)69);
((Desulfotalea,Geobacter)99,(Salmonella,(Bradyrhizobium,Rhodopseudomonas)100)100);
(Bdellovibrio,(Ralstonia,((Bordetella,Bordetella)100,(Burcholderia,Burcholderia)100)55)55);
(Bdellovibrio,((Chromobacterium,(((Legionella,Francizella)62,Acinetobacter)78,((Shewanella,((Vibrio,Vibrio)54,Vibrio)100)70,Idiomarina)90)51)38,(Pseudomonas,(Pseudomonas,Pseudomonas)64)100)100);
(Nostos,((Deinococcus,Thermus)100,Treponema));
(Geobacter,(((Mesorhizobium,Pseudomonas)88,Vibrio)89,Agrobacterium));
((Bacillus,(Bacillus,(Bacillus,Bacillus)99)79)100,(Chromobacterium,((Vibrio,Photorhabdus)72,(Burcholderia,Burcholderia)100)73)73);
(Bacillus,(Thermus,(((Leptospira,Nostos)53,Prochlorococcus)100,(Shewanella,(Silicibacter,Caulobacter)97)44)53)53);
(Thermus,((Synechococcus,Prochlorococcus)100,Thermosynechococcus));
(((Brucella,Brucella)100,Brucella)100,(Pirellula,Pirellula));
(((Picrophilus,(Thermoplasma,Thermoplasma)100)100,(Archhaeoglobus,(Thermococcus,((Pyrococcus,Pyrococcus)84,Pyrococcus)98)98)99)73,(Pyrobaculum,((((Aquifex,(Dehalococcoides,Thermoanaerobacter)83)87,(Methanobacterium,(Methanopyrus,(Methanobacterium,Methanobacterium)100)82)91)35,(Aeropyrum,(Sulforobus,Sulforobus)100)99)37,(Thermus,(Coxiella,Bradyrhizobium)100)100)22)22);
(Porphyromonas,(((Haemophilus,Bacteroides)69,Legionella)86,Treponema));
((Geobacter,Desulfotalea)96,((Pseudomonas,(Acinetobacter,Idiomarina)99)100,((Methylococcus,(Ralstonia,Azoarcus)83)100,(Gluconobacter,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)61)95)100)31)47)47);
(Pyrobaculum,((Aeropyrum,(Sulforobus,Sulforobus)100)99,((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)57)100)100,((Archhaeoglobus,((Methanosarcina,Methanosarcina)100,(Haroarcula,Halobacterium)100)95)45,(Thermoplasma,Thermoplasma)100)38)100)100);
(Aeropyrum,(Symbiobacterium,((((Chlamydophila,Chlamydophila)96,(Chlamydophila,Chlamydophila)36)86,Parachlamydia)98,(Pirellula,Pirellula)100)44)44);
(Oceanobacillus,(Thermus,(((Mesorhizobium,Streptomyces)75,(Bradyrhizobium,(Deinococcus,(Agrobacterium,(Silicibacter,(Brucella,(Brucella,Brucella)93)100)52)60)41)11)18,(Streptomyces,(Nocardia,(Mycobacterium,Mycobacterium)100)63)37)23)23);
((((((((((((Desulfotalea,((Treponema,Treponema)99,(Borrelia,Borrelia)100)55)32,(Geobacter,Chlorobium)16)1,Desulfovibrio)2,(((((Wolbachia,Wolbachia)100,Ehrlichia)35,Anaplasma)100,((Helicobacter,Helicobacter)62,(Campylobacter,Wolinella)52)96)33,Bdellovibrio)14),(Parachlamydia,((Chlamydophila,(Chlamydophila,Chlamydophila)72)49,Chlamydophila)100)89),((((Fusobacterium,((Deinococcus,Thermus)98,(Symbiobacterium,(((Leifsonia,Tropheryma)54,(Propionibacterium,((((Corynebacterium,(Corynebacterium,Corynebacterium)98)98,(Mycobacterium,(Mycobacterium,Mycobacterium)100)98)48,Nocardia)60,(Streptomyces,Streptomyces)99)54)67)30,Bifidobacterium)33)5)5)6,(Gloeobacter,Caulobacter)27)1,(((((((Bacillus,Bacillus)100,(Geobacillus,Thermoanaerobacter)10)3,(Bacillus,(Bacillus,Bacillus)98)50)18,((Enterococcus,(Listeria,Listeria)100)43,Oceanobacillus)9),((Staphylococcus,Staphylococcus)100,((Lactobacillus,(Lactobacillus,Lactobacillus)100)74,(Lactococcus,(((Streptococcus,Streptococcus)38,(Streptococcus,Streptococcus)32)17,Streptococcus)82)98)18)2)16,((Clostridium,Clostridium)56,Clostridium)89)7,((Dehalococcoides,(Pirellula,Pirellula)100)15,((Prochlorococcus,Synechococcus)99,(Thermosynechococcus,(Synechosystis,Nostos)54)57)79))),((Leptospira,Gluconobacter)18,((((Bartonella,Bartonella)100,(((Agrobacterium,Sinorhizobium)98,Mesorhizobium)59,((Brucella,Brucella)82,Brucella)100)47)91,(Silicibacter,Zymomonas)55)27,(Bradyrhizobium,Rhodopseudomonas)97)57)3)),(Phytoplasma,((((Mycoplasma,(Mycoplasma,Mycoplasma)100)100,(Ureaplasma,Mycoplasma)97)58,(Mycoplasma,(Mycoplasma,Mycoplasma)48)97)33,Mycoplasma)53)8),((Buchnera,((Blochmannia,Wigglesworthia)45,Buchnera)29)86,(((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)57)100)100,((((Acinetobacter,Francizella)67,((Pseudomonas,(Pseudomonas,Pseudomonas)96)99,(Shewanella,(((Vibrio,Vibrio)61,(Vibrio,Vibrio)22)94,(((((Salmonella,(Escherichia,Shigella)80)99,(Yersinia,Yersinia)99)73,Photorhabdus)44,Erwinia)96,(Mannheimia,(Pasteurella,Haemophilus)95)76)80)89)54)35)16,Idiomarina)3,((Neisseria,(Coxiella,(((((Ralstonia,(Burcholderia,Burcholderia)100)64,((Bordetella,Bordetella)80,Bordetella)100)57,Azoarcus)62,Nitrosomonas)31,Chromobacterium)38)9)6,Methylococcus)8)12)9,((Porphyromonas,(Bacteroides,Bacteroides)89)100,Legionella)26)8)12)3,(Aquifex,Thermotoga)54)26,(Rickettsia,(Rickettsia,Rickettsia)97)100)100,Pyrobaculum)58,((Picrophilus,Nanoarchaeum)52,((Aeropyrum,(Sulforobus,Sulforobus)100)78,((Methanopyrus,(((Methanobacterium,Methanobacterium)96,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)46)88)97)20,Methanobacterium)11)13,(Archhaeoglobus,(Methanosarcina,Methanosarcina)100)70)28)27)27);
((((((Bacillus,Bacillus)100,Geobacillus)54,(Bacillus,Bacillus)68)69,Bacillus)67,Oceanobacillus)98,((Thermoanaerobacter,Symbiobacterium)67,(Clostridium,Clostridium)99)99);
(Fusobacterium,(((((Bacillus,(Oceanobacillus,((Bacillus,Bacillus)96,(Geobacillus,(Bacillus,Bacillus)100)91)37)38)99,(Staphylococcus,Staphylococcus)100)99,(Thermoanaerobacter,(Clostridium,Clostridium)89)92)31,Streptococcus)38,(Enterococcus,(Listeria,Listeria)100)44)44);
(Symbiobacterium,(((((Streptomyces,Streptomyces)99,Silicibacter)76,(Caulobacter,Agrobacterium)97)34,((Geobacillus,Oceanobacillus)82,Deinococcus)37)46,(Bacillus,Bacillus)100)100);
((((((Pyrococcus,Pyrococcus)97,Pyrococcus)98,Thermococcus)100,((Methanobacterium,Methanobacterium)97,(Methanopyrus,Methanobacterium)59)65)100,Nanoarchaeum)98,(Aquifex,Dehalococcoides));
(((Ureaplasma,Mycoplasma)43,Mycoplasma)43,(Phytoplasma,((Lactobacillus,Lactobacillus)100,((Lactococcus,(Streptococcus,(Streptococcus,(Streptococcus,(Streptococcus,Streptococcus)98)55)91)38)100,((Enterococcus,Lactobacillus)92,((Listeria,Listeria)100,(((Bacillus,Bacillus)100,(Geobacillus,(Bacillus,Bacillus)100)42)63,(Bacillus,(Oceanobacillus,(Staphylococcus,Staphylococcus)100)50)72)95)58)53)76)94)94);
((Bacteroides,Bacteroides)90,(Pasteurella,(Ralstonia,(Acinetobacter,Bdellovibrio)99)100)100);
(Pseudomonas,((Propionibacterium,Streptomyces)48,(Leifsonia,((Corynebacterium,(Corynebacterium,Corynebacterium)99)99,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)76)97)72)72);
(Synechosystis,(((Shewanella,Methylococcus)25,(((Nitrosomonas,Azoarcus)37,(Chromobacterium,(Pseudomonas,Rhodopseudomonas)65)14)22,(Vibrio,(Vibrio,Vibrio)75)67)31)37,(Pirellula,Pirellula)100)100);
(Haroarcula,((Nostos,Synechosystis)93,Gloeobacter));
(((Thermoanaerobacter,Picrophilus)71,Pyrobaculum)57,(Aeropyrum,(Sulforobus,Sulforobus)100)100);
(Thermosynechococcus,((Bacteroides,(Rickettsia,Rickettsia)100)90,((Desulfovibrio,(Porphyromonas,Bacteroides)97)39,(Gloeobacter,(Bordetella,Bordetella)100)93)62)62);
(Bacteroides,((Thermus,Deinococcus)79,(Chlamydophila,Chlamydophila)100)100);
(Desulfotalea,((((Vibrio,Vibrio)86,Vibrio)88,Vibrio)100,((Methylococcus,Nitrosomonas)64,(Legionella,(Pseudomonas,(Pseudomonas,Pseudomonas)87)100)96)100)100);
(Aquifex,((((Mannheimia,Haemophilus)78,Pasteurella)100,Shewanella)100,(Nitrosomonas,(Azoarcus,Sinorhizobium)100)86)86);
((((((Halobacterium,Haroarcula)100,Archhaeoglobus)20,(Methanosarcina,Methanosarcina)100)52,(Pyrococcus,((Thermococcus,Pyrococcus)78,Pyrococcus)75)100)14,Methanobacterium)13,((((Pasteurella,((Oceanobacillus,(Listeria,Listeria)100)55,((Geobacillus,((Bacillus,Bacillus)100,((Staphylococcus,Staphylococcus)100,(Bacillus,Bacillus)99)40)30)62,Bacillus)79)16)52,((((Thermotoga,((Parachlamydia,Francizella)75,Tropheryma)30)6,(Picrophilus,(Thermoplasma,Thermoplasma)89)67)10,((Clostridium,Thermoanaerobacter)27,((Haemophilus,Streptococcus)100,Bifidobacterium)61)10)2,(((((Streptomyces,Streptomyces)100,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)98)61,(Leifsonia,(Propionibacterium,(Corynebacterium,Corynebacterium)83)96)35)43,Dehalococcoides)32,(Deinococcus,Thermus)73)13)4)24,(Methanobacterium,Methanobacterium)100)23,(Methanopyrus,(Aeropyrum,(Pyrobaculum,(Sulforobus,Sulforobus)100)58)90)45)45);
(Parachlamydia,((Xanthomonas,(Xanthomonas,Xanthomonas)96)100,((Bordetella,Bordetella)100,((Helicobacter,Pseudomonas)67,((Mannheimia,Xylella)97,(Pirellula,Pirellula)100)20)67)100)100);
(Pyrobaculum,((Sulforobus,Sulforobus)100,Thermoplasma));
(Mycobacterium,(Bradyrhizobium,(Pseudomonas,Pseudomonas)98)98);
(Symbiobacterium,(Bacillus,(((Nostos,Thermosynechococcus)100,Pseudomonas)59,(Caulobacter,(Nocardia,((Streptomyces,Streptomyces)100,(Mycobacterium,Mycobacterium)100)86)100)55)89)89);
((((((((Nocardia,(Streptomyces,Streptomyces)100)92,((Propionibacterium,(Corynebacterium,Corynebacterium)75)61,(Mycobacterium,Mycobacterium)100)44)35,(Clostridium,Deinococcus)75)83,Methanopyrus)52,((((Brucella,Brucella)66,Brucella)100,((Bradyrhizobium,(Mesorhizobium,(Agrobacterium,Sinorhizobium)95)86)96,(Acinetobacter,(Vibrio,Vibrio)90)78)51)95,(Dehalococcoides,((Bacillus,(Bacillus,Bacillus)78)96,(Enterococcus,Listeria)41)61)80)95)100,Methanobacterium)100,Desulfotalea)73,(Methanobacterium,(Methanosarcina,Methanosarcina)100)100);
(Pseudomonas,(Silicibacter,(Sinorhizobium,Bradyrhizobium)91)91);
((Bradyrhizobium,Rhodopseudomonas)98,((Sinorhizobium,Ralstonia)30,((Burcholderia,Azoarcus)43,((Xanthomonas,(Xanthomonas,Xanthomonas)95)100,(Bordetella,(Bordetella,Bordetella)97)100)23)14)14);
(Brucella,(((Xanthomonas,Xanthomonas)99,Xylella)98,Xanthomonas));
(Idiomarina,(Ralstonia,(Vibrio,((Burcholderia,Burcholderia)100,(Bordetella,Bordetella)100)91)70)70);
(Oceanobacillus,(((((Yersinia,Yersinia)100,(Photorhabdus,Erwinia)34)62,(Salmonella,(Escherichia,Shigella)100)98)100,((Vibrio,Vibrio)49,Vibrio)81)81,(Caulobacter,(Xanthomonas,Xanthomonas)100)72)72);
(Azoarcus,(((Bacillus,Bacillus)92,Oceanobacillus)72,(Bacillus,Bacillus)100)100);
(Chromobacterium,(Acinetobacter,(((Methylococcus,(Pseudomonas,(Pseudomonas,Pseudomonas)54)80)26,Nitrosomonas)30,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)59)100)100)77)77);
(Archhaeoglobus,(Desulfovibrio,(((((Geobacillus,((Oceanobacillus,((Listeria,Listeria)100,(Bacillus,Bacillus)100)80)50,Bacillus)28)90,(Bacillus,Thermoanaerobacter)59)38,(Symbiobacterium,Geobacter)62)54,Thermotoga)68,(Deinococcus,Thermus)100)46)46);
((((((Xanthomonas,Xanthomonas)82,Xanthomonas)84,Xylella)100,Methylococcus)45,(Pseudomonas,(Pseudomonas,Pseudomonas)69)100)100,(Pirellula,Pirellula));
(Wolinella,(Rickettsia,(Rickettsia,Rickettsia)68)68);
((((((Sinorhizobium,(Mesorhizobium,(Silicibacter,Bradyrhizobium)99)31)40,Rhodopseudomonas)41,(Nocardia,Corynebacterium)52)61,(Pseudomonas,Propionibacterium)33)39,Pseudomonas)100,(Streptomyces,Streptomyces));
(Methanosarcina,(Bacillus,(Staphylococcus,(Bacillus,(Legionella,(Dehalococcoides,Streptococcus)95)21)20)28)28);
((((((Pseudomonas,Pseudomonas)77,Pseudomonas)90,(Azoarcus,((Vibrio,Shewanella)96,(Yersinia,Yersinia)100)92)41)85,(Xanthomonas,(Xanthomonas,Xanthomonas)61)99)100,Deinococcus)100,((Aeropyrum,Nanoarchaeum)36,(Thermoplasma,(Methanobacterium,Methanobacterium)98)37)37);
(Nostos,((Synechosystis,Desulfotalea)54,((Thermosynechococcus,(Chromobacterium,(Neisseria,((Nitrosomonas,Synechococcus)74,Prochlorococcus)40)34)31)11,((Mesorhizobium,(Sinorhizobium,Agrobacterium)78)96,((Methylococcus,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)100)54)98)86,(Porphyromonas,(Bacteroides,Bacteroides)100)51)31)14)22)22);
(Nitrosomonas,((Erwinia,Acinetobacter)45,Pseudomonas));
(((((Methanopyrus,Archhaeoglobus)66,(Methanosarcina,Methanosarcina)100)29,(Halobacterium,Haroarcula)100)43,((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)62)100)100,(Methanobacterium,Methanobacterium)100)64)100,(Vibrio,(Vibrio,Vibrio)99)99);
(((((((((Sinorhizobium,Agrobacterium)86,(((Bartonella,Bartonella)100,((Brucella,Brucella)63,Brucella)100)93,Mesorhizobium)65)48,(Bradyrhizobium,Rhodopseudomonas)100)70,Rickettsia)57,Caulobacter)51,Silicibacter)44,Gluconobacter)53,Zymomonas)100,(Bordetella,(Bordetella,Bordetella)100)100);
(Symbiobacterium,((Oceanobacillus,Bacillus)80,(((((((((Streptococcus,Streptococcus)12,(Streptococcus,Streptococcus)24)45,Streptococcus)92,Lactococcus)99,Enterococcus)94,(Lactobacillus,(Lactobacillus,Lactobacillus)100)97)93,(Listeria,Listeria)100)86,((Geobacillus,(Bacillus,Bacillus)100)46,(Bacillus,Bacillus)100)83)35,(Staphylococcus,Staphylococcus)100)49)49);
(((Mycobacterium,Mycobacterium)100,Deinococcus)100,(Burcholderia,Burcholderia));
(Bradyrhizobium,(Ralstonia,(((Neisseria,Acinetobacter)41,(Pseudomonas,(Pseudomonas,Pseudomonas)70)70)59,((Burcholderia,(Idiomarina,(Legionella,Shewanella)94)98)40,(Chromobacterium,(Bordetella,(Bordetella,Bordetella)85)100)73)52)54)54);
(Synechosystis,((((Zymomonas,Gluconobacter)83,(Burcholderia,Burcholderia)100)92,Nitrosomonas)100,(Streptomyces,Streptomyces)100)100);
(Methanosarcina,((Gloeobacter,Streptomyces)45,(Agrobacterium,(Brucella,Brucella)100)48)48);
(Bradyrhizobium,((Azoarcus,Pseudomonas)41,(Bordetella,Bordetella)100)100);
(Streptococcus,(((Leptospira,Photorhabdus)100,Neisseria)100,(Xanthomonas,(Azoarcus,Vibrio)100)100)100);
(Fusobacterium,(Corynebacterium,(Bacillus,(Bacillus,(Listeria,Listeria)100)96)81)81);
(Clostridium,((Streptomyces,Rhodopseudomonas)89,(Bacillus,Bacillus)100)100);
(Agrobacterium,(Pseudomonas,(Idiomarina,(Xanthomonas,Xylella)100)40)40);
(Bacteroides,(Haemophilus,(Photorhabdus,(Agrobacterium,(Mannheimia,Pasteurella)99)54)48)48);
(((((Bordetella,(Bordetella,Bordetella)95)100,(Chromobacterium,(Ralstonia,(Burcholderia,Burcholderia)100)98)45)46,Pseudomonas)54,((Yersinia,Yersinia)100,((Escherichia,Erwinia)43,Photorhabdus)24)100)100,((Mesorhizobium,Sinorhizobium)96,(Bartonella,Bartonella)100)100);
(Mesorhizobium,(Xanthomonas,(Xanthomonas,Xanthomonas)82)82);
(Nocardia,(Neisseria,(((Ralstonia,(Burcholderia,Burcholderia)100)73,Azoarcus)98,(Bordetella,Bordetella)100)93)93);
((Rhodopseudomonas,Bradyrhizobium)68,(Bacteroides,Bacteroides));
(((Caulobacter,Mesorhizobium)95,Bradyrhizobium)100,(Xanthomonas,Xanthomonas));
(Clostridium,(Dehalococcoides,((Zymomonas,Treponema)42,(Nitrosomonas,((Idiomarina,Francizella)52,((Legionella,Methylococcus)67,((((Shewanella,(Vibrio,((Vibrio,Vibrio)41,Vibrio)42)100)61,((Haemophilus,Mannheimia)54,Pasteurella)100)43,((Yersinia,Yersinia)100,((Blochmannia,Buchnera)100,(Salmonella,(Escherichia,Shigella)96)75)26)47)100,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)72)85)100)50)31)77)71)45)45);
(Geobacillus,(((Brucella,Brucella)62,Brucella)100,Sinorhizobium));
(Nostos,((Acinetobacter,Pseudomonas)79,(Streptomyces,Streptomyces)100)100);
(Gluconobacter,((Yersinia,Yersinia)100,(Shigella,Escherichia)100)100);
(Clostridium,(((Xanthomonas,Xanthomonas)45,Xanthomonas)98,Xylella));
((Pirellula,Pirellula)100,((((Gluconobacter,Silicibacter)57,Methylococcus)30,(Erwinia,(Pseudomonas,((Xanthomonas,Xanthomonas)64,Xanthomonas)99)45)67)48,(Azoarcus,(Burcholderia,Burcholderia)100)35)35);
(((Vibrio,Vibrio)63,Vibrio)100,(Bacillus,Bacillus));
(Clostridium,((Geobacter,Nostos)86,(Mesorhizobium,Sinorhizobium)93)93);
((Bacillus,(Bacillus,Bacillus)100)100,(Erwinia,(((Chromobacterium,Mesorhizobium)57,((Pseudomonas,(Burcholderia,Burcholderia)100)98,(Sinorhizobium,Agrobacterium)97)78)62,(Streptomyces,(Pseudomonas,(Yersinia,Yersinia)100)99)93)77)77);
((((Brucella,Brucella)92,Brucella)100,Caulobacter)69,(Shewanella,(Mesorhizobium,Azoarcus)68)68);
(((Pyrococcus,Pyrococcus)51,Pyrococcus)100,((Pyrobaculum,(Sulforobus,Sulforobus)97)100,(Thermotoga,(Symbiobacterium,(Methanosarcina,Picrophilus)99)48)100)100);
(((Propionibacterium,Leifsonia)80,(Corynebacterium,(Corynebacterium,Corynebacterium)91)100)53,(((Bordetella,(Bordetella,Bordetella)81)100,((Agrobacterium,Sinorhizobium)100,Tropheryma)34)55,(Deinococcus,(Photorhabdus,(Bartonella,Bartonella)100)66)63)63);
(Gluconobacter,((Pasteurella,(Pseudomonas,Pseudomonas)100)96,(Burcholderia,Burcholderia)100)100);
(((Pyrococcus,Thermococcus)80,Pyrococcus)93,((Treponema,Pyrobaculum)68,(Listeria,Listeria)100)100);
(Desulfovibrio,(((Bordetella,Bordetella)56,Bordetella)100,(Pseudomonas,Erwinia)100)100);
(Erwinia,((Streptococcus,Streptococcus)98,(Listeria,Listeria)100)100);
(Clostridium,(Geobacillus,((Clostridium,(Photorhabdus,(Buchnera,((Salmonella,(Escherichia,Shigella)100)100,(Erwinia,(Yersinia,Yersinia)100)68)59)82)100)32,((Pseudomonas,Pseudomonas)100,(Methylococcus,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)50)73)100)51)34)90)90);
((((Burcholderia,Idiomarina)57,(Acinetobacter,Vibrio)93)41,(Pseudomonas,(Bordetella,Bordetella)100)64)100,(Mesorhizobium,(Agrobacterium,(Brucella,Brucella)100)98)98);
(((Bacillus,((((Lactobacillus,(Streptococcus,Enterococcus)98)47,(Lactobacillus,Lactobacillus)46)96,Streptococcus)73,(Oceanobacillus,Bacillus)97)61)66,(Staphylococcus,Geobacillus)98)92,(Bifidobacterium,(Corynebacterium,(Corynebacterium,Corynebacterium)72)100)100);
(Xanthomonas,((Sinorhizobium,Mesorhizobium)53,(Gluconobacter,Bradyrhizobium)100)100);
((Bacillus,Enterococcus)82,(Sinorhizobium,(Neisseria,((Chromobacterium,((((Bordetella,Bordetella)63,Bordetella)100,Nitrosomonas)36,(Ralstonia,(Burcholderia,Burcholderia)100)98)13)17,(Azoarcus,(Xanthomonas,(Xylella,(Xanthomonas,Xanthomonas)99)52)100)44)11)53)53);
(Symbiobacterium,(Streptomyces,((Vibrio,(Vibrio,(Vibrio,Vibrio)99)40)70,(Pseudomonas,(Brucella,(Brucella,Brucella)71)100)62)51)51);
(Synechococcus,((((((Mycobacterium,(Mycobacterium,Mycobacterium)100)100,Nocardia)78,(Corynebacterium,(Corynebacterium,Corynebacterium)100)100)79,(Leifsonia,(Streptomyces,Streptomyces)100)97)81,Propionibacterium)100,(Vibrio,Vibrio)100)100);
(Leifsonia,(((Oceanobacillus,(Bacillus,Bacillus)100)59,Bacillus)60,(Listeria,Listeria)100)100);
(Clostridium,(Geobacter,(Desulfovibrio,(Chlorobium,(Clostridium,(Desulfotalea,Enterococcus)56)30)17)23)23);
(Vibrio,(((((((Bacillus,(Bacillus,Bacillus)100)29,((Staphylococcus,Staphylococcus)100,(Bacillus,Bacillus)100)27)49,Geobacillus)82,(Listeria,Listeria)100)91,Oceanobacillus)99,(Lactobacillus,Enterococcus)66)44,(Streptococcus,Streptococcus)100)100);
(((Rickettsia,Rickettsia)76,Rickettsia)100,(Streptococcus,Streptococcus));
(Agrobacterium,((Erwinia,Xanthomonas)93,Shewanella));
((Lactococcus,(Listeria,Listeria)100)100,(Geobacter,((((Rhodopseudomonas,(Agrobacterium,Mesorhizobium)43)100,(Acinetobacter,(Xanthomonas,(Xanthomonas,Xanthomonas)70)100)87)56,Legionella)95,(Caulobacter,(Mycobacterium,Mycobacterium)100)79)93)93);
(Clostridium,(Bifidobacterium,(((((Desulfotalea,Methylococcus)58,Synechococcus)52,(Synechosystis,Nostos)81)55,Gloeobacter)90,(Shewanella,(Bacteroides,Bacteroides)100)45)78)78);
(Salmonella,((Burcholderia,Burcholderia)100,Chromobacterium));
(Aquifex,((Desulfovibrio,Geobacter)42,(Desulfotalea,((Fusobacterium,(Clostridium,Clostridium)100)95,(Campylobacter,(Wolinella,(Helicobacter,Helicobacter)95)100)100)64)26)26);
(Synechococcus,((Pseudomonas,Pseudomonas)100,((((Erwinia,(Salmonella,(Escherichia,Shigella)100)100)81,Photorhabdus)100,Idiomarina)85,((Shewanella,(Vibrio,(Vibrio,Vibrio)100)99)100,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)100)78)100)67)100)100);
(Nitrosomonas,(((Chlamydophila,(Chlamydophila,Chlamydophila)88)25,Chlamydophila)100,Parachlamydia));
(Streptomyces,((Thermus,Nocardia)100,Streptomyces));
((Pirellula,Pirellula)100,(Leifsonia,(Coxiella,(Vibrio,(Idiomarina,(Vibrio,((Methylococcus,(Pseudomonas,(Pseudomonas,Pseudomonas)71)100)48,(Vibrio,Vibrio)100)81)27)46)67)98)98);
(((Clostridium,Clostridium)99,Clostridium)100,(Staphylococcus,Enterococcus));
(Clostridium,((Nostos,Shewanella)72,(Bacteroides,Bacteroides)87)87);
(Mycoplasma,((Bacteroides,Bacteroides)100,Prochlorococcus));
(Gloeobacter,(Vibrio,(Erwinia,(Pseudomonas,((Nitrosomonas,(Rhodopseudomonas,Chromobacterium)90)80,(Photorhabdus,(Yersinia,Yersinia)100)62)15)20)30)30);
(Pasteurella,((Campylobacter,Helicobacter)100,Helicobacter));
(Nostos,(((Vibrio,((Pseudomonas,Pseudomonas)99,(Burcholderia,Burcholderia)100)78)41,Mesorhizobium)17,(Bdellovibrio,(Vibrio,Vibrio)100)57)57);
(((Geobacter,Wolinella)100,Symbiobacterium)97,(Archhaeoglobus,(Haroarcula,Halobacterium)100)100);
(Synechosystis,(Rhodopseudomonas,(Pseudomonas,(Idiomarina,Legionella)100)91)91);
(Pyrobaculum,((Thermoplasma,Thermoplasma)100,Halobacterium));
(Haroarcula,((((Methanosarcina,Lactobacillus)100,Anaplasma)54,Bacillus)99,(Burcholderia,(Bordetella,(Bordetella,Bordetella)100)100)99)99);
((((((Haemophilus,(Pasteurella,Mannheimia)60)100,Bifidobacterium)45,Bacillus)89,Helicobacter)88,Fusobacterium)100,(Methanosarcina,Methanosarcina));
(Photorhabdus,((Bordetella,Bordetella)41,Bordetella));
(Agrobacterium,(Azoarcus,(Xanthomonas,Xylella)100)100);
(Yersinia,(Gluconobacter,(Silicibacter,(Zymomonas,(Caulobacter,((Rhodopseudomonas,Bradyrhizobium)100,(Mesorhizobium,((Sinorhizobium,Agrobacterium)100,((Brucella,(Brucella,Brucella)70)100,(Bartonella,Bartonella)100)56)59)97)88)76)43)72)72);
(Zymomonas,(Chromobacterium,(Coxiella,((Erwinia,Photorhabdus)45,(Yersinia,Yersinia)100)96)63)63);
(((((((Xanthomonas,Xanthomonas)98,Xanthomonas)82,Xylella)100,(Ralstonia,(Pseudomonas,Pseudomonas)75)40)83,(Burcholderia,Burcholderia)100)75,Salmonella)100,(Mycobacterium,Mycobacterium));
(Aquifex,(Dehalococcoides,((Pirellula,Pirellula)100,((((((Gloeobacter,((Synechosystis,(Nostos,Thermosynechococcus)71)56,(Synechococcus,Prochlorococcus)98)84)100,(Deinococcus,Thermus)100)63,(((Campylobacter,(Wolinella,(Helicobacter,Helicobacter)85)91)99,(((Anaplasma,Ehrlichia)80,(Wolbachia,Wolbachia)100)100,(Rickettsia,(Rickettsia,Rickettsia)97)100)47)19,((((((Methylococcus,(Pseudomonas,(Pseudomonas,Pseudomonas)78)100)29,(((Shewanella,((Photorhabdus,(((Vibrio,(Vibrio,Vibrio)94)56,Vibrio)51,Idiomarina)26)20,((Salmonella,(Escherichia,Shigella)69)98,(Erwinia,(Yersinia,Yersinia)100)84)55)41)54,(((Buchnera,Blochmannia)63,(Buchnera,Wigglesworthia)40)94,((Mannheimia,Haemophilus)69,Pasteurella)98)43)59,((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)56)98)100,Legionella)5)1)1,(Acinetobacter,Francizella)29)27,Coxiella)71,((Neisseria,Chromobacterium)72,((Azoarcus,Nitrosomonas)63,((Ralstonia,(Burcholderia,Burcholderia)100)97,(Bordetella,(Bordetella,Bordetella)45)100)82)56)55)85,(Caulobacter,(Zymomonas,((Gluconobacter,Silicibacter)29,(((Agrobacterium,(Mesorhizobium,Sinorhizobium)48)68,((Brucella,(Brucella,Brucella)81)100,(Bartonella,Bartonella)100)33)75,(Bradyrhizobium,Rhodopseudomonas)98)80)8)21)72)37)70)18,((Bdellovibrio,(Desulfovibrio,Desulfotalea)65)32,Geobacter)26)3,(((Lactobacillus,Lactobacillus)100,((((((Mycoplasma,(Mycoplasma,(Mycoplasma,Mycoplasma)100)91)94,Ureaplasma)100,(Mycoplasma,(Mycoplasma,Mycoplasma)97)100)98,Mycoplasma)61,Phytoplasma)87,((Lactobacillus,((Lactococcus,(((Streptococcus,Streptococcus)41,Streptococcus)37,(Streptococcus,Streptococcus)39)99)100,Enterococcus)47)44,((Staphylococcus,Staphylococcus)100,((Listeria,Listeria)100,(((Bacillus,Bacillus)100,Geobacillus)16,((Bacillus,Bacillus)98,(Oceanobacillus,Bacillus)59)19)59)16)23)40)17)32,((Fusobacterium,Thermotoga)25,(Symbiobacterium,(Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)50)70)96)36)11)5),(((((Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)92)60,((Streptomyces,Streptomyces)100,((Tropheryma,Leifsonia)88,(Bifidobacterium,Propionibacterium)50)18)24)46,(Corynebacterium,(Corynebacterium,Corynebacterium)98)100)96,(Chlorobium,(Porphyromonas,(Bacteroides,Bacteroides)100)100)84)20,((Parachlamydia,((Chlamydophila,Chlamydophila)100,(Chlamydophila,Chlamydophila)63)100)99,(Leptospira,((Treponema,Treponema)95,(Borrelia,Borrelia)100)99)95)49)3)25)54)54);
(Streptomyces,(Coxiella,((Ralstonia,Chromobacterium)68,(Legionella,(Photorhabdus,(Yersinia,Yersinia)100)70)94)83)83);
((((Bacillus,Bacillus)96,Bacillus)76,Oceanobacillus)100,((((Streptomyces,Streptomyces)97,(Nocardia,(Mycobacterium,Mycobacterium)100)56)100,Nostos)78,(Gloeobacter,(Methylococcus,(Burcholderia,Burcholderia)100)100)82)82);
(Streptococcus,(((Silicibacter,(Shigella,Escherichia)100)51,(Bordetella,(Bordetella,Bordetella)85)100)99,(((Nocardia,(Corynebacterium,(Corynebacterium,Corynebacterium)75)98)50,Leifsonia)67,(Streptomyces,Streptomyces)100)100)100);
(Desulfotalea,((Treponema,Treponema)77,(Borrelia,Borrelia)100)100);
((Streptococcus,Lactococcus)100,(((((Erwinia,(Salmonella,(Escherichia,Shigella)100)100)77,(Yersinia,Yersinia)100)37,Photorhabdus)100,(Mannheimia,(Haemophilus,Pasteurella)61)100)97,(Mycobacterium,Mycobacterium)100)100);
((((Bradyrhizobium,Rhodopseudomonas)100,((Bartonella,Bartonella)100,(((Agrobacterium,Mesorhizobium)23,Sinorhizobium)77,(Brucella,Brucella)100)35)91)99,(Silicibacter,((Rickettsia,Zymomonas)62,Gluconobacter)52)57)100,(((Bordetella,(Bordetella,Bordetella)55)100,((Azoarcus,(Nitrosomonas,(Neisseria,Chromobacterium)98)39)41,(Ralstonia,(Burcholderia,Burcholderia)100)100)54)96,((Idiomarina,(Pasteurella,(Shewanella,((((Photorhabdus,(Yersinia,Yersinia)100)41,Erwinia)79,(Salmonella,(Shigella,Escherichia)98)100)96,(Vibrio,(Vibrio,(Vibrio,Vibrio)66)96)64)20)59)47)56,((((Methylococcus,Francizella)69,(Legionella,Coxiella)97)28,(Pseudomonas,(Pseudomonas,Pseudomonas)49)100)44,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)85)83)100)20)64)64);
(Symbiobacterium,(Leptospira,(Coxiella,(((Shewanella,((Vibrio,Vibrio)51,Vibrio)61)100,Francizella)12,(Acinetobacter,(Pseudomonas,(Pseudomonas,Pseudomonas)94)100)18)39)18)18);
(Geobacillus,(((((Nostos,Synechosystis)63,Thermosynechococcus)94,Gloeobacter)79,(Prochlorococcus,Synechococcus)88)100,(Desulfotalea,Geobacter)96)96);
(Desulfotalea,((Nitrosomonas,Methylococcus)100,((Idiomarina,Shewanella)78,(Vibrio,Vibrio)100)47)47);
(Pyrobaculum,((Archhaeoglobus,(Aeropyrum,(Sulforobus,Sulforobus)100)53)38,(Methanopyrus,(Methanobacterium,((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)67)76)95,(Picrophilus,(Thermoplasma,Thermoplasma)85)100)52)97)27)27);
(Clostridium,(((Corynebacterium,Corynebacterium)56,Corynebacterium)99,Nocardia));
(Leptospira,(((Xanthomonas,Xanthomonas)99,Xanthomonas)100,(Nocardia,(Streptomyces,Streptomyces)100)100)100);
(((Rhodopseudomonas,Bradyrhizobium)95,Mesorhizobium)89,(Staphylococcus,(Bacillus,Bacillus)100)100);
(Dehalococcoides,((Methanosarcina,Methanosarcina)100,((Haroarcula,Halobacterium)100,(Archhaeoglobus,((Methanopyrus,(Methanobacterium,(Methanobacterium,Methanobacterium)100)86)88,(Picrophilus,(Thermoplasma,Thermoplasma)96)100)74)54)84)84);
(Bacillus,((Salmonella,(Agrobacterium,Nostos)43)53,(Pseudomonas,(Bordetella,(Bordetella,Bordetella)97)100)19)19);
(Pyrobaculum,(((Sulforobus,Sulforobus)99,Aeropyrum)51,(Nanoarchaeum,(((Archhaeoglobus,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)91)84)97)27,Methanobacterium)13,(Methanopyrus,((Methanobacterium,Methanobacterium)49,(((Halobacterium,Haroarcula)100,(Methanosarcina,Methanosarcina)100)40,(Picrophilus,(Thermoplasma,Thermoplasma)98)100)12)15)3)1)56)56);
(Fusobacterium,((((Acinetobacter,((Photorhabdus,(Vibrio,Vibrio)92)40,(Salmonella,(Shigella,Escherichia)89)100)60)92,(Pseudomonas,Chromobacterium)89)65,(Burcholderia,Lactobacillus)71)73,((Bacillus,Geobacillus)45,(Bacillus,(Bacillus,Bacillus)100)54)39)39);
(Picrophilus,(((Bradyrhizobium,Pseudomonas)49,Acinetobacter)58,(Bdellovibrio,((((((Caulobacter,(Mesorhizobium,Sinorhizobium)76)100,((Shewanella,Legionella)64,((Idiomarina,(Vibrio,Vibrio)99)53,Vibrio)11)13)10,Chromobacterium)20,Azoarcus)50,(Ralstonia,(Burcholderia,Burcholderia)100)100)56,(Xanthomonas,(Xanthomonas,Xanthomonas)85)100)83)79)79);
((((Bacillus,Bacillus)100,((Geobacillus,(Bacillus,Bacillus)100)63,Bacillus)81)92,Oceanobacillus)97,(Symbiobacterium,(Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)51)100)99)99);
((Picrophilus,(Thermoplasma,Thermoplasma)100)100,(Silicibacter,((((Streptococcus,(Lactobacillus,Staphylococcus)46)58,(Listeria,Listeria)100)53,Oceanobacillus)40,((Legionella,Bdellovibrio)100,(Lactobacillus,(Borrelia,Borrelia)100)69)48)94)94);
(Ralstonia,((Pseudomonas,Pseudomonas)20,Pseudomonas));
(Leptospira,((((Pseudomonas,Pseudomonas)75,Pseudomonas)100,Helicobacter)87,Bdellovibrio));
(Desulfotalea,(((((Pyrococcus,Pyrococcus)55,Thermococcus)60,Pyrococcus)100,((Methanobacterium,Methanobacterium)99,Archhaeoglobus)40)70,(Haroarcula,Halobacterium)100)100);
((((((((Geobacillus,Bacillus)40,Bacillus)82,Oceanobacillus)100,(Bacillus,Bacillus)100)71,Bacillus)56,(Listeria,Listeria)100)71,Lactococcus)73,((Pasteurella,(Erwinia,Agrobacterium)72)100,((Silicibacter,Acinetobacter)49,(Caulobacter,Idiomarina)95)96)96);
(Bacillus,(((Silicibacter,Mesorhizobium)35,(Sinorhizobium,Agrobacterium)39)98,Chromobacterium));
((((Xanthomonas,Xanthomonas)100,Streptomyces)100,Campylobacter)100,(Streptococcus,Streptococcus));
(((Wolbachia,Wolbachia)100,(Anaplasma,Ehrlichia)80)100,(Legionella,(Mannheimia,Pasteurella)99)99);
((Desulfovibrio,Caulobacter)100,(Bifidobacterium,(Streptomyces,(Corynebacterium,Corynebacterium)100)49)49);
(((Staphylococcus,Staphylococcus)100,Streptococcus)94,(Nocardia,(Pirellula,Pirellula)100)100);
(Pyrobaculum,(Picrophilus,(Thermoplasma,Thermoplasma)99)99);
((((Salmonella,(Shigella,Escherichia)100)100,(Yersinia,Yersinia)100)38,(Photorhabdus,Erwinia)25)100,(Burcholderia,Burcholderia));
(((((Zymomonas,Chlorobium)75,Geobacter)75,Methanopyrus)88,Wolinella)72,(Methanobacterium,(Methanobacterium,(Methanosarcina,Methanosarcina)100)85)85);
(Erwinia,(Rhodopseudomonas,(Mesorhizobium,Agrobacterium)100)100);
(Aquifex,(((Methanobacterium,Methanopyrus)50,Methanobacterium)41,(Methanosarcina,Methanosarcina)100)100);
(Clostridium,((Geobacter,(Bifidobacterium,(Propionibacterium,(((Mycobacterium,Mycobacterium)100,Nocardia)49,(Corynebacterium,(Corynebacterium,Corynebacterium)73)85)100)53)87)41,((Mycoplasma,Mycoplasma)84,(Mycoplasma,(Mycoplasma,(Ureaplasma,(Chlorobium,(Mycoplasma,Mycoplasma)100)19)20)23)13)39)39);
(Helicobacter,(((Shewanella,Haemophilus)89,Escherichia)100,Neisseria));
(Fusobacterium,((Bordetella,Pasteurella)60,(Bacteroides,Dehalococcoides)91)91);
((Prochlorococcus,Synechococcus)99,(((Pirellula,Pirellula)100,Synechosystis)32,((((Nocardia,(Streptomyces,Streptomyces)96)94,Bradyrhizobium)57,Rhodopseudomonas)84,(Zymomonas,(Mesorhizobium,((Silicibacter,Pseudomonas)33,((Burcholderia,Burcholderia)100,((Chromobacterium,Agrobacterium)39,(Photorhabdus,((Xanthomonas,Pseudomonas)51,(Pseudomonas,(Bordetella,Bordetella)100)10)11)33)47)49)36)29)51)21)21);
(Thermoanaerobacter,(((Methanosarcina,Methanosarcina)100,Methanobacterium)96,Haroarcula));
(Clostridium,(((Deinococcus,Staphylococcus)71,Bacillus)86,Bacillus));
(Pyrobaculum,((Aeropyrum,(Sulforobus,Sulforobus)100)73,(((Methanobacterium,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)58)97)100)54,((Methanopyrus,((Methanobacterium,Methanobacterium)100,((Methanosarcina,Methanosarcina)100,(Haroarcula,Halobacterium)100)76)8)8,Archhaeoglobus)7)9,(Nanoarchaeum,(Picrophilus,(Thermoplasma,Thermoplasma)83)100)28)63)63);
((Thermotoga,Clostridium)84,(((Methanobacterium,Methanobacterium)99,Archhaeoglobus)73,(Methanobacterium,(Methanosarcina,Methanosarcina)100)77)77);
(Archhaeoglobus,(Desulfovibrio,(Desulfotalea,Chlorobium)75)75);
(Clostridium,(Lactobacillus,(Streptococcus,(Listeria,Listeria)98)96)96);
(Desulfotalea,(Azoarcus,(Ralstonia,(Burcholderia,Burcholderia)100)100)100);
(((((((((((((((((((((((((Photorhabdus,((Yersinia,Yersinia)82,(Salmonella,Erwinia)65)61)23,(Escherichia,Shigella)96)42,(Buchnera,(Buchnera,(Blochmannia,Wigglesworthia)36)17)52)14,(Haemophilus,Pasteurella)100)40,(Vibrio,(Vibrio,(Vibrio,Vibrio)49)79)80)39,((Francizella,Shewanella)27,Idiomarina)27)7,((Pseudomonas,(Pseudomonas,Pseudomonas)91)95,Acinetobacter)32)18,((((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)94)70)93,Methylococcus)16,(Neisseria,((Nitrosomonas,((Ralstonia,(Burcholderia,Burcholderia)100)84,(Azoarcus,(Bordetella,(Bordetella,Bordetella)50)100)21)41)41,Chromobacterium)51)78)20,Coxiella)4)24,Legionella)50,(((Ehrlichia,Anaplasma)89,(Wolbachia,Wolbachia)93)100,(Rickettsia,(Rickettsia,Rickettsia)100)100)24)26,(((Zymomonas,Gluconobacter)58,Silicibacter)22,((Caulobacter,(Bradyrhizobium,Rhodopseudomonas)74)56,((Bartonella,Bartonella)93,(Sinorhizobium,((Mesorhizobium,(Brucella,(Brucella,Brucella)77)55)32,Agrobacterium)24)25)84)53)49)28,(((Desulfotalea,Chlorobium)14,Aquifex)2,Desulfovibrio)3)5,(Bdellovibrio,Geobacter)25)8,((Helicobacter,Helicobacter)88,(Campylobacter,Wolinella)78)100)2,(Deinococcus,Thermus)78)1,((Fusobacterium,Thermotoga)30,((Prochlorococcus,Synechococcus)95,(Thermosynechococcus,(Gloeobacter,(Nostos,Synechosystis)63)52)55)90)8),(((Porphyromonas,(Bacteroides,Bacteroides)100)100,(Pirellula,Pirellula)100)27,(((Leptospira,Dehalococcoides)43,((Borrelia,Borrelia)100,(Treponema,Treponema)94)68)5,(Parachlamydia,(((Chlamydophila,Chlamydophila)81,Chlamydophila)54,Chlamydophila)85)100)3)2)16,(Tropheryma,((((Streptomyces,(Leifsonia,Streptomyces)40)61,(Propionibacterium,Bifidobacterium)40)14,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)85)64)39,(Corynebacterium,(Corynebacterium,Corynebacterium)100)97)45)42)11,((Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)97)85)34,Symbiobacterium)29)5,(Geobacillus,((Bacillus,Bacillus)100,((((Bacillus,(Staphylococcus,Staphylococcus)88)8,Lactobacillus),((Lactobacillus,Lactobacillus)100,(Enterococcus,(Oceanobacillus,(Bacillus,(Listeria,Listeria)99)39)14)14))18,((Streptococcus,(Lactococcus,(Streptococcus,(Streptococcus,Streptococcus)97)72)35)25,Streptococcus)52)27)63)58)29,(((Mycoplasma,(Mycoplasma,Mycoplasma)100)83,(Mycoplasma,Ureaplasma)58)86,(Mycoplasma,(Mycoplasma,(Mycoplasma,Mycoplasma)43)93)78)49)47,Phytoplasma)100,(Sulforobus,Sulforobus)97)43,Pyrobaculum)35,(Aeropyrum,((Haroarcula,Halobacterium)100,((Nanoarchaeum,(Thermococcus,((Pyrococcus,Pyrococcus)84,Pyrococcus)97)97)26,((((Methanopyrus,Methanobacterium)32,(Methanobacterium,Methanobacterium)95)27,((Methanosarcina,Methanosarcina)100,Archhaeoglobus)22)10,(Picrophilus,(Thermoplasma,Thermoplasma)79)100)18)32)52)52);
(Nostos,(((Ralstonia,Burcholderia)86,Chromobacterium)100,Gluconobacter));
((Gloeobacter,Nostos)100,(Pirellula,Pirellula));
(Agrobacterium,(Streptococcus,(Streptococcus,Streptococcus)89)89);
((Desulfotalea,Burcholderia)100,(Pirellula,Pirellula));
(Aquifex,(Thermus,(((((((Streptomyces,Streptomyces)100,Propionibacterium)30,((Corynebacterium,(Corynebacterium,Corynebacterium)75)97,((Mycobacterium,(Mycobacterium,Mycobacterium)100)98,Nocardia)66)34)34,Tropheryma)25,Leifsonia)47,Bifidobacterium)99,((Mycoplasma,Mycoplasma)94,(((((Gluconobacter,Silicibacter)29,(Agrobacterium,Bradyrhizobium)42)93,Rickettsia)26,Anaplasma)35,(Parachlamydia,(Borrelia,Borrelia)100)31)8)31)84)84);
(((Bradyrhizobium,Sinorhizobium)68,Mesorhizobium)100,(Bordetella,Bordetella));
(Pyrobaculum,(Aeropyrum,(Sulforobus,Sulforobus)77)77);
(Desulfovibrio,(Vibrio,(Vibrio,Vibrio)90)90);
(Bacillus,(Vibrio,(Xanthomonas,Bordetella)57)57);
(Bdellovibrio,((Wolinella,Caulobacter)100,(Vibrio,(Shigella,(Yersinia,Yersinia)100)98)93)93);
(Fusobacterium,((((((Staphylococcus,Bacillus)42,(Oceanobacillus,(Listeria,Listeria)99)40)20,Bacillus)28,Geobacillus)64,((Lactobacillus,Enterococcus)81,(Lactococcus,(Streptococcus,(Streptococcus,Streptococcus)66)40)48)69)81,(Phytoplasma,(Mycoplasma,(Mycoplasma,Mycoplasma)100)70)43)43);
(((Geobacter,Desulfovibrio)94,Desulfotalea)100,(Methanosarcina,Methanosarcina));
(((((((((Yersinia,Yersinia)100,Erwinia)33,(Salmonella,(Escherichia,Shigella)100)100)36,((Vibrio,(Vibrio,(Vibrio,Vibrio)49)94)100,(Pasteurella,Haemophilus)100)14)10,Photorhabdus)22,Blochmannia)94,Idiomarina)100,(Caulobacter,Rhodopseudomonas)99)100,(Helicobacter,Helicobacter));
(Salmonella,(Chromobacterium,(Escherichia,(Shigella,(Burcholderia,Burcholderia)100)57)83)83);
(Desulfotalea,(Silicibacter,((((Idiomarina,((Vibrio,Vibrio)70,Vibrio)85)45,Shewanella)65,(Salmonella,(Erwinia,(Photorhabdus,(Yersinia,Yersinia)100)39)88)98)99,(((Bordetella,Bordetella)66,Bordetella)100,(Ralstonia,(Burcholderia,Burcholderia)100)99)99)89)89);
(Methanosarcina,(Clostridium,(Fusobacterium,Treponema)100)100);
(Geobacter,(Rhodopseudomonas,(Methylococcus,((Acinetobacter,(Pseudomonas,(Pseudomonas,Pseudomonas)98)76)28,(Shewanella,((Yersinia,Yersinia)100,(Photorhabdus,(Erwinia,((Salmonella,(Escherichia,Shigella)96)100,(Buchnera,(Buchnera,Blochmannia)78)95)30)25)32)55)45)39)48)48);
((((Rhodopseudomonas,Bradyrhizobium)100,(Streptomyces,Streptomyces)100)73,Nocardia)100,(Staphylococcus,Bacillus));
((Bordetella,Bordetella)100,(Mycobacterium,Mycobacterium));
(Bordetella,((Pseudomonas,Pseudomonas)89,Shewanella));
(Azoarcus,(Pseudomonas,(Pseudomonas,Pseudomonas)100)100);
(Synechosystis,(Shewanella,((Agrobacterium,Mesorhizobium)60,(Deinococcus,(Ralstonia,(Bordetella,(Bordetella,Bordetella)99)100)99)51)93)93);
((Escherichia,Photorhabdus)97,(Burcholderia,Burcholderia));
(Agrobacterium,(Shewanella,(Acinetobacter,(Vibrio,Vibrio)100)54)54);
(Thermus,(Bacteroides,(Bacteroides,Porphyromonas)80)80);
(Nitrosomonas,(Shewanella,(Vibrio,Vibrio)94)94);
(Thermoplasma,((Rhodopseudomonas,Bradyrhizobium)100,Vibrio));
(((Xylella,Xanthomonas)100,(Legionella,(Haemophilus,(Pasteurella,Mannheimia)75)100)47)90,((Salmonella,Azoarcus)54,(Methylococcus,(Ralstonia,(Burcholderia,Burcholderia)100)100)81)81);
(Porphyromonas,(((Pseudomonas,Nitrosomonas)75,Idiomarina)100,Treponema));
((((Pseudomonas,Ralstonia)100,((Idiomarina,Erwinia)100,Agrobacterium)80)100,(Legionella,Caulobacter)100)100,(Pirellula,Pirellula));
(Methanobacterium,((Pseudomonas,(Vibrio,Vibrio)93)68,(Pseudomonas,(Streptomyces,(Pseudomonas,(Neisseria,(Thermoanaerobacter,Lactobacillus)67)82)100)81)100)100);
(((Burcholderia,Burcholderia)100,Ralstonia)100,(Buchnera,Methylococcus));
(Streptomyces,((Nocardia,Deinococcus)100,Streptomyces));
((((Xanthomonas,Xanthomonas)97,Xanthomonas)100,Geobacter)100,(Pirellula,Pirellula));
(Nostos,((((Vibrio,Vibrio)61,Idiomarina)70,Salmonella)100,Desulfovibrio));
((Geobacter,Desulfotalea)99,((((((Shewanella,Acinetobacter)29,(Pseudomonas,Pseudomonas)100)33,Legionella)29,(Methylococcus,(Xylella,((Xanthomonas,Xanthomonas)69,Xanthomonas)98)100)61)26,((Nitrosomonas,(Ralstonia,Azoarcus)56)34,Chromobacterium)77)12,(Neisseria,(Vibrio,(Vibrio,(Vibrio,Vibrio)86)61)100)29)29);
(Aquifex,((((((Pseudomonas,((Yersinia,Erwinia)92,(Salmonella,Escherichia)100)67)49,Vibrio)35,(Chromobacterium,(Burcholderia,Burcholderia)100)84)67,Xanthomonas)65,Pseudomonas)99,(Agrobacterium,Zymomonas)98)98);
(Aquifex,((Mesorhizobium,Silicibacter)100,(Burcholderia,Burcholderia)100)100);
(((Aquifex,Thermus)59,Pyrobaculum)100,(Sulforobus,Sulforobus));
(Leptospira,(((Chromobacterium,Ralstonia)42,(Shewanella,Vibrio)85)78,(Caulobacter,(Silicibacter,Mesorhizobium)96)99)99);
((((Thermosynechococcus,Nostos)80,Synechosystis)100,Streptomyces)95,(Halobacterium,Haroarcula));
((((((Azoarcus,(Nitrosomonas,(Bordetella,Bordetella)100)72)85,(Xanthomonas,(Xanthomonas,Xanthomonas)100)100)45,(Chromobacterium,(Caulobacter,Zymomonas)37)27)11,(Burcholderia,Ralstonia)68)22,(((Campylobacter,Helicobacter)100,Oceanobacillus)59,Porphyromonas)71)100,(Methanosarcina,Methanosarcina));
(Nanoarchaeum,(Campylobacter,(Treponema,(Nostos,Thermosynechococcus)100)77)77);
(Fusobacterium,((Helicobacter,Helicobacter)100,((Geobacter,(Bacteroides,Clostridium)87)68,(((Neisseria,Ralstonia)77,(Burcholderia,Burcholderia)100)100,(Chlorobium,((Zymomonas,Gluconobacter)88,((Anaplasma,Ehrlichia)31,(Wolbachia,Wolbachia)99)78)100)75)78)100)100);
(((((Geobacillus,(Bacillus,Bacillus)100)41,(Bacillus,Bacillus)100)55,Oceanobacillus)47,Bacillus)100,(Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)83)100)100);
(Methanosarcina,(Bacteroides,(Geobacter,Desulfotalea)52)52);
(Pyrobaculum,(Picrophilus,(Thermococcus,(Sulforobus,Sulforobus)100)91)91);
(((((Haemophilus,Pasteurella)66,Mannheimia)100,Desulfotalea)85,Wolinella)100,(Bacteroides,Bacteroides));
(Pyrobaculum,(Picrophilus,((Thermoplasma,Thermoplasma)98,(Methanobacterium,(((Aeropyrum,Methanopyrus)77,Sulforobus)24,((Pyrococcus,Pyrococcus)98,(Thermococcus,(Methanosarcina,(Methanobacterium,(Haroarcula,Halobacterium)100)69)38)36)42)20)34)31)31);
((Salmonella,(Escherichia,Shigella)100)97,(((Bordetella,Bordetella)61,Bordetella)100,(Pseudomonas,Azoarcus)100)100);
(Parachlamydia,(Azoarcus,(Vibrio,Legionella)83)83);
(Prochlorococcus,(Francizella,(Corynebacterium,Corynebacterium)100)100);
(Silicibacter,(((Ralstonia,Azoarcus)55,(Pseudomonas,Pseudomonas)28)40,(Pseudomonas,(Vibrio,Vibrio)100)65)65);
((((Geobacter,Geobacillus)21,(Thermoanaerobacter,Photorhabdus)96)52,Shewanella)99,(Pyrococcus,(Pyrococcus,Pyrococcus)98)98);
((Xanthomonas,Xanthomonas)100,(Caulobacter,Rhodopseudomonas));
(Fusobacterium,(Thermoanaerobacter,(Clostridium,Lactobacillus)80)80);
(Pyrobaculum,(Methanopyrus,(((Thermoplasma,(Picrophilus,Thermoplasma)94)100,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)94)86)100)34,(((Methanobacterium,Desulfotalea)53,Chromobacterium)30,(Aeropyrum,(Sulforobus,((Methanobacterium,Methanobacterium)95,(Archhaeoglobus,((Haroarcula,Halobacterium)100,(Methanosarcina,Methanosarcina)100)83)72)65)18)28)50)58)58);
(((((Rhodopseudomonas,(Agrobacterium,Nitrosomonas)84)28,(Azoarcus,(Pseudomonas,Pseudomonas)100)39)24,Sinorhizobium)38,Acinetobacter)100,(Bartonella,Bartonella));
((Picrophilus,(Thermoplasma,Thermoplasma)91)99,(Aquifex,(Dehalococcoides,(Pyrobaculum,(Sulforobus,Sulforobus)100)86)72)72);
(Clostridium,(Oceanobacillus,(Clostridium,(((Listeria,Listeria)100,Enterococcus)31,(Lactobacillus,((Lactobacillus,Lactobacillus)85,(Lactococcus,(Streptococcus,(Streptococcus,(Streptococcus,(Streptococcus,Streptococcus)98)65)62)100)100)97)71)27)16)16);
((((((Pseudomonas,Pseudomonas)100,((Bordetella,Bordetella)77,Bordetella)100)94,(Salmonella,(Vibrio,(Vibrio,Vibrio)100)78)82)92,Nocardia)90,(Lactobacillus,Bacteroides)67)100,(Bacillus,Bacillus));
(Vibrio,((Corynebacterium,Corynebacterium)32,Corynebacterium));
(Thermoanaerobacter,((((((Chromobacterium,((Azoarcus,Ralstonia)55,((Legionella,Nitrosomonas)100,(Acinetobacter,(Burcholderia,Burcholderia)100)13)12)23)36,((Shewanella,(Vibrio,(Vibrio,(Vibrio,Vibrio)59)82)100)53,(Pseudomonas,(Pseudomonas,Pseudomonas)80)100)51)43,Caulobacter)81,Bdellovibrio)79,(Chlorobium,(Nocardia,(Mycobacterium,Mycobacterium)100)88)97)66,(Methylococcus,(Streptomyces,Streptomyces)100)98)98);
(((Thermus,Deinococcus)71,Pyrobaculum)52,(Aeropyrum,(Methanopyrus,(Pyrococcus,(Thermococcus,Pyrococcus)80)100)96)96);
((((((Idiomarina,Shewanella)61,(((Yersinia,Yersinia)100,(Salmonella,(Shigella,Escherichia)98)97)51,(Buchnera,Erwinia)41)79)33,(Vibrio,(Vibrio,(Vibrio,Vibrio)69)99)67)87,Coxiella)27,(Methylococcus,(Xylella,((Xanthomonas,Xanthomonas)34,Xanthomonas)35)100)49)100,(Chromobacterium,(Nitrosomonas,(Azoarcus,(Bordetella,(Bordetella,Bordetella)87)100)49)53)53);
(((((((((((Photorhabdus,(Erwinia,(Yersinia,Yersinia)100)85)100,(Escherichia,(Shigella,Salmonella)63)100)100,(Pseudomonas,Pseudomonas)66)24,(Bordetella,(Bordetella,Bordetella)31)100)15,((Xanthomonas,(Xanthomonas,Xanthomonas)81)100,(Pseudomonas,Ralstonia)100)33)4,(Burcholderia,Burcholderia)100)15,Chromobacterium)20,((Brucella,(Brucella,Brucella)61)100,(Sinorhizobium,(Mesorhizobium,Agrobacterium)67)93)100)19,(Acinetobacter,Caulobacter)42)41,Gluconobacter)82,(Mycobacterium,((Streptomyces,Streptomyces)100,((Propionibacterium,Nocardia)64,(Corynebacterium,(Corynebacterium,Corynebacterium)86)100)79)61)61);
(((((Pasteurella,Deinococcus)52,((Synechosystis,Ralstonia)52,(Xanthomonas,(Xanthomonas,Xanthomonas)74)100)64)96,Francizella)100,((Chromobacterium,Acinetobacter)84,Shewanella)100)100,(Mycoplasma,(Mycoplasma,Mycoplasma)99)99);
((((Nocardia,(Mycobacterium,Mycobacterium)100)31,(Streptomyces,Streptomyces)100)63,(Corynebacterium,(Corynebacterium,Corynebacterium)100)100)100,(Caulobacter,(Bradyrhizobium,Rhodopseudomonas)98)98);
(Thermotoga,(Wolinella,(Leptospira,(Bacteroides,Bacteroides)100)59)59);
(((((((Xanthomonas,(Xanthomonas,Xanthomonas)54)100,Chromobacterium)19,(Legionella,Acinetobacter)49)48,Coxiella)72,(Burcholderia,Burcholderia)100)67,Ralstonia)100,(Rhodopseudomonas,Bradyrhizobium));
(((Bacillus,Bacillus)100,Bacillus)100,(Vibrio,Vibrio));
(Pyrobaculum,(Aeropyrum,(Archhaeoglobus,(Thermococcus,Pyrococcus)98)94)94);
((Streptomyces,Nostos)84,(Bacillus,Bacillus));
(Symbiobacterium,(Pseudomonas,(Silicibacter,((((Brucella,Brucella)85,Brucella)100,(Rhodopseudomonas,(Mesorhizobium,(Agrobacterium,Sinorhizobium)100)100)87)100,(Oceanobacillus,((Pirellula,Pirellula)100,(Streptomyces,Streptomyces)100)41)100)69)91)91);
(Chromobacterium,(((((Escherichia,Shigella)100,Salmonella)100,(Yersinia,Yersinia)100)100,Vibrio)100,Vibrio));
((((Streptomyces,Streptomyces)100,Nocardia)98,(Mycobacterium,Mycobacterium)100)100,(Streptococcus,Enterococcus));
(Sinorhizobium,(Acinetobacter,((Pseudomonas,Pseudomonas)87,(Xanthomonas,Xanthomonas)100)55)55);
(Haemophilus,((Bordetella,Bordetella)21,Bordetella));
(Oceanobacillus,(((Yersinia,Yersinia)100,(Salmonella,(Escherichia,Shigella)99)100)100,(((Synechococcus,Pseudomonas)56,Pseudomonas)26,(Streptomyces,(Corynebacterium,Corynebacterium)100)35)100)100);
(Bdellovibrio,((Streptomyces,Streptomyces)100,(Mycobacterium,Mycobacterium)100)100);
((((((((Photorhabdus,(Yersinia,Yersinia)100)72,(Salmonella,(Escherichia,Shigella)98)100)33,Erwinia)100,(Idiomarina,Shewanella)47)32,(Vibrio,(Vibrio,(Vibrio,Vibrio)60)99)100)99,Methylococcus)71,Coxiella)99,(Nitrosomonas,(Azoarcus,(Chromobacterium,((Ralstonia,(Burcholderia,Burcholderia)100)100,(Bordetella,(Bordetella,Bordetella)79)100)86)59)67)67);
(((((((Burcholderia,Burcholderia)100,((Bordetella,Bordetella)80,Bordetella)100)41,Ralstonia)72,Azoarcus)98,Chromobacterium)55,Nitrosomonas)99,(Legionella,Francizella));
(Nostos,((Chromobacterium,Sinorhizobium)49,(Pseudomonas,(Shewanella,(Rhodopseudomonas,((Pseudomonas,(Burcholderia,Burcholderia)100)56,(Pirellula,Pirellula)100)58)78)41)94)94);
((Thermoplasma,Thermoplasma)100,(((Sulforobus,(Pyrobaculum,Sulforobus)53)55,Pseudomonas)55,(Burcholderia,Burcholderia)100)100);
(((Chromobacterium,Neisseria)91,Ralstonia)100,(Campylobacter,Helicobacter));
(Sulforobus,((Clostridium,Thermoanaerobacter)71,((Photorhabdus,((Brucella,Brucella)78,Brucella)100)47,(Symbiobacterium,(((Deinococcus,Thermus)69,((Zymomonas,Caulobacter)96,((Silicibacter,(Mesorhizobium,Sinorhizobium)65)36,((Gluconobacter,Agrobacterium)91,(Rhodopseudomonas,Bradyrhizobium)99)93)76)90)26,((Corynebacterium,(Corynebacterium,Corynebacterium)94)100,((Streptomyces,Streptomyces)100,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)23)20)64)42)64)64);
((Methanosarcina,Methanosarcina)100,((Dehalococcoides,Geobacter)64,(((Deinococcus,Thermus)99,Symbiobacterium)32,((((Desulfovibrio,Desulfotalea)14,Aquifex)8,(Chlorobium,(Wolinella,Helicobacter)100)38)12,(((Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)100,(Streptomyces,Streptomyces)96)100,(Geobacillus,(Bacillus,Bacillus)100)100)38)4)9)9);
(Archhaeoglobus,((Methanobacterium,Listeria)51,Chlorobium));
(Clostridium,(Treponema,(Streptococcus,(Erwinia,(Deinococcus,(Agrobacterium,Sinorhizobium)80)89)60)49)49);
((Bdellovibrio,Zymomonas)100,(Mycobacterium,Mycobacterium));
((Bacteroides,Bradyrhizobium)100,(Methanosarcina,Methanosarcina));
(Clostridium,(Staphylococcus,(Oceanobacillus,(Bacillus,(Bacillus,Bacillus)100)44)53)53);
((Ureaplasma,(Geobacillus,(Staphylococcus,Staphylococcus)99)72)33,(((Corynebacterium,Corynebacterium)99,Bacillus)47,(Streptococcus,(Bacillus,(Haemophilus,Helicobacter)51)66)38)38);
((Borrelia,Borrelia)100,((Silicibacter,Mesorhizobium)100,(Leptospira,(Xylella,(Xanthomonas,Xanthomonas)100)91)96)96);
(((Chlamydophila,(Chlamydophila,Chlamydophila)100)56,Chlamydophila)100,(Geobacter,(Rickettsia,Leptospira)60)60);
(Treponema,((Azoarcus,(Nitrosomonas,(Neisseria,Chromobacterium)100)51)66,((Bordetella,(Bordetella,Bordetella)74)100,(Ralstonia,(Burcholderia,Burcholderia)100)100)79)79);
(Thermoanaerobacter,(Thermosynechococcus,(Prochlorococcus,Synechococcus)91)91);
(Fusobacterium,(((Chlamydophila,(Chlamydophila,Chlamydophila)100)56,Chlamydophila)100,(Parachlamydia,(Porphyromonas,(Bacteroides,Bacteroides)100)90)87)87);
(Deinococcus,(((Vibrio,Vibrio)53,Vibrio)95,(((Photorhabdus,(Erwinia,(Yersinia,Yersinia)100)89)91,(Salmonella,(Escherichia,Shigella)100)97)100,(Shewanella,(Idiomarina,((((((Azoarcus,(Bdellovibrio,Chromobacterium)42)28,((Ralstonia,(Burcholderia,Burcholderia)100)97,(Bordetella,(Bordetella,Bordetella)53)100)54)12,Nitrosomonas)17,(Methylococcus,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)90)84)100)42)15,(Pseudomonas,(Pseudomonas,Pseudomonas)99)92)21,(Gluconobacter,((Rhodopseudomonas,Bradyrhizobium)99,(Caulobacter,((((Brucella,(Brucella,Brucella)94)100,(Sinorhizobium,Agrobacterium)99)28,Mesorhizobium)98,((Anaplasma,Ehrlichia)94,(Wolbachia,Wolbachia)100)100)28)32)33)71)45)23)21)33)33);
(Porphyromonas,(Methylococcus,(Propionibacterium,((Silicibacter,Ralstonia)71,(Wolinella,(Erwinia,(Yersinia,Yersinia)100)100)74)45)63)63);
((Neisseria,(Azoarcus,Ralstonia)56)100,(Methylococcus,((((((((Salmonella,(Shigella,Escherichia)100)100,(Photorhabdus,(Yersinia,Yersinia)100)79)40,Erwinia)100,((Mannheimia,Pasteurella)51,Haemophilus)100)100,(Vibrio,(Vibrio,(Vibrio,Vibrio)100)94)100)100,(Idiomarina,Shewanella)100)100,((Coxiella,Legionella)98,((Pseudomonas,Pseudomonas)47,Pseudomonas)100)82)97,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)97)81)100)61)61);
((Gloeobacter,Synechosystis)62,(Tropheryma,(Prochlorococcus,(Desulfovibrio,Geobacter)55)32)32);
(Chlorobium,(Methanobacterium,(Methanosarcina,Methanosarcina)100)100);
(Gluconobacter,((Lactobacillus,Bacillus)93,Lactobacillus));
((((Methanopyrus,Methanobacterium)70,Methanobacterium)66,Methanosarcina)100,(Bifidobacterium,(Geobacter,(Porphyromonas,(Bacteroides,Bacteroides)93)83)79)79);
(Wolinella,(Azoarcus,(((Erwinia,(Salmonella,(Escherichia,Shigella)100)100)99,((Pseudomonas,(Nitrosomonas,Xanthomonas)42)33,((Acinetobacter,(Haemophilus,(Mannheimia,Pasteurella)67)100)62,Chromobacterium)20)30)15,(Ralstonia,(Burcholderia,Burcholderia)100)48)9)9);
(((Brucella,Brucella)65,Brucella)100,(Desulfotalea,Desulfovibrio));
((Helicobacter,(Helicobacter,Wolinella)73)100,(Staphylococcus,(Bacillus,Bacillus)94)94);
(Methylococcus,(Ehrlichia,(Anaplasma,(Wolbachia,Wolbachia)99)63)63);
(Parachlamydia,(Methanopyrus,((((Pyrococcus,Pyrococcus)65,Pyrococcus)72,Thermococcus)95,(Aeropyrum,(Sulforobus,Sulforobus)100)97)80)80);
(Idiomarina,(Brucella,(Brucella,Brucella)42)42);
(Clostridium,(Mycobacterium,(Chromobacterium,((Pseudomonas,Streptomyces)100,(Pirellula,Pirellula)100)98)37)37);
(Shewanella,((Treponema,Treponema)98,(Borrelia,Borrelia)100)100);
(Archhaeoglobus,(((Bordetella,Bordetella)69,Bordetella)97,(Ralstonia,(Halobacterium,(Nocardia,(Mycobacterium,Mycobacterium)100)83)69)43)43);
(((Salmonella,(Escherichia,Shigella)100)100,((Lactococcus,(Porphyromonas,Bacteroides)97)58,Bdellovibrio)47)100,(Lactobacillus,Lactobacillus));
(((((Nostos,Thermosynechococcus)26,(Synechosystis,Gloeobacter)14)66,(Prochlorococcus,Synechococcus)98)100,Clostridium)100,(Sulforobus,Aeropyrum));
(Thermoplasma,(Sinorhizobium,(Lactobacillus,(Bacillus,(Propionibacterium,(Chromobacterium,Xanthomonas)88)37)38)49)49);
(Enterococcus,(((((Escherichia,Shigella)94,Salmonella)92,(Yersinia,Yersinia)100)86,Mannheimia)99,(Bacteroides,(Agrobacterium,(Sinorhizobium,Mesorhizobium)73)100)100)100);
(Bacillus,((((((Erwinia,(Yersinia,Yersinia)100)58,(Photorhabdus,(Salmonella,(Escherichia,Shigella)100)100)47)100,(Vibrio,(Vibrio,(Vibrio,Vibrio)82)98)100)96,Neisseria)73,Leptospira)100,(Thermosynechococcus,Nostos)99)99);
(Thermococcus,((Chlorobium,(Bdellovibrio,Geobacter)58)100,Thermotoga));
(Thermotoga,((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)78)89)100,(Methanobacterium,((Methanosarcina,Methanosarcina)100,(((Pyrobaculum,(Archhaeoglobus,(Sulforobus,Sulforobus)100)65)96,(Methanobacterium,Methanobacterium)100)62,(Methanopyrus,(Aeropyrum,(Halobacterium,Haroarcula)100)100)75)57)40)46)46);
((Lactococcus,(Lactobacillus,Streptococcus)22)73,((Bacillus,(Bifidobacterium,((Leifsonia,Streptomyces)38,(Propionibacterium,((Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)73)66,(Corynebacterium,(Corynebacterium,Corynebacterium)85)100)84)45)44)90)42,((Methylococcus,Thermosynechococcus)50,(Mycoplasma,(Treponema,Treponema)85)88)54)54);
(((Bacillus,Bacillus)100,(Lactobacillus,Lactococcus)55)100,(Vibrio,Erwinia));
(Bdellovibrio,((((Brucella,(Brucella,Brucella)76)100,Mesorhizobium)80,(Agrobacterium,Sinorhizobium)99)86,((Rhodopseudomonas,Bradyrhizobium)100,(Bartonella,Bartonella)100)49)49);
(Silicibacter,(Pseudomonas,(Nitrosomonas,Azoarcus)100)100);
(((((Methanosarcina,Methanobacterium)64,((Nanoarchaeum,(Pyrobaculum,Aeropyrum)57)75,Methanobacterium)13)31,(Halobacterium,Haroarcula)100)70,(Thermoplasma,Picrophilus)100)100,(Treponema,(Borrelia,Borrelia)100)100);
((Bacteroides,Bacteroides)100,((Haemophilus,Helicobacter)87,(Escherichia,Salmonella)100)100);
(Clostridium,((Bacillus,Bacillus)50,((((Pseudomonas,(Escherichia,(Yersinia,Yersinia)100)100)87,Acinetobacter)58,(Deinococcus,Azoarcus)99)100,(Nocardia,(Streptomyces,Streptomyces)100)88)93)93);
(Geobacter,(Helicobacter,(Azoarcus,Methylococcus)70)70);
((((Salmonella,(Shigella,Escherichia)53)99,((Photorhabdus,(Yersinia,Yersinia)100)23,Erwinia)13)49,((Wigglesworthia,Buchnera)70,Buchnera)78)100,(Burcholderia,Burcholderia));
(Symbiobacterium,(Corynebacterium,(((Geobacillus,Bacillus)52,(Bacillus,(Bacillus,Bacillus)55)94)63,(Haemophilus,(Pasteurella,Mannheimia)76)100)94)94);
(Thermococcus,(Nocardia,(Pseudomonas,(Burcholderia,Burcholderia)100)100)100);
((Silicibacter,Agrobacterium)45,(Pseudomonas,((Sinorhizobium,Methylococcus)45,(Xanthomonas,(Xanthomonas,Xanthomonas)100)98)41)41);
(Chlorobium,((Pseudomonas,Rhodopseudomonas)100,Pseudomonas));
(Bacillus,((Pyrobaculum,Methylococcus)83,(Xanthomonas,Xanthomonas)100)100);
(Pyrococcus,(Desulfovibrio,(Azoarcus,Nitrosomonas)100)100);
((Aquifex,Thermotoga)99,((((Methanosarcina,(Aeropyrum,Methanobacterium)22)16,(Sulforobus,Methanopyrus)45)26,Archhaeoglobus)20,(Methanobacterium,(Pyrobaculum,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)55)100)86)19)26)26);
((((((Mesorhizobium,Agrobacterium)100,(Rhodopseudomonas,Bradyrhizobium)100)100,((Mycobacterium,Mycobacterium)59,Mycobacterium)100)49,(Burcholderia,Burcholderia)100)39,Pseudomonas)100,(Pirellula,Pirellula));
(Sulforobus,((Aquifex,Burcholderia)40,((Thermus,Synechococcus)42,(Gloeobacter,(Synechosystis,(Thermosynechococcus,Nostos)53)69)87)43)43);
(Synechosystis,(((((((((Pasteurella,(Haemophilus,Mannheimia)92)98,((((Erwinia,Photorhabdus)58,(Yersinia,Yersinia)100)73,(Salmonella,(Escherichia,Shigella)100)100)91,(Vibrio,(Vibrio,(Vibrio,Vibrio)60)92)100)92)100,(Idiomarina,Legionella)16)19,Coxiella)6,Methylococcus)9,(Shewanella,(Pseudomonas,(Pseudomonas,Pseudomonas)95)100)19)13,((Neisseria,Chromobacterium)87,(Azoarcus,((Ralstonia,(Burcholderia,Burcholderia)100)99,((Bordetella,Bordetella)79,Bordetella)100)45)70)88)16,(Acinetobacter,Francizella)30)9,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)93)80)100)100);
((Bordetella,(Bordetella,Bordetella)64)100,(Salmonella,Erwinia));
(Azoarcus,(((Pseudomonas,Pseudomonas)71,Pseudomonas)100,(Salmonella,(Escherichia,Shigella)100)100)100);
(Staphylococcus,((Silicibacter,Streptomyces)99,Mesorhizobium));
((((Chlorobium,Aquifex)17,(Thermoanaerobacter,(Geobacillus,(Staphylococcus,Staphylococcus)100)100)77)13,((Treponema,Parachlamydia)21,((Desulfotalea,(Caulobacter,(Thermus,Geobacter)45)57)36,(Francizella,(Legionella,((Methylococcus,Coxiella)76,Nitrosomonas)92)37)100)8)8)59,((Sulforobus,Sulforobus)100,(Thermoplasma,(Halobacterium,Haroarcula)100)30)30);
(((Bacteroides,Bacteroides)100,Porphyromonas)100,(Treponema,Treponema));
(((((Synechosystis,(Thermus,(Prochlorococcus,Synechococcus)79)33)63,Methylococcus)64,Archhaeoglobus)90,Pyrobaculum)100,(Pyrococcus,(Pyrococcus,Pyrococcus)47)47);
(Acinetobacter,(Silicibacter,((Rhodopseudomonas,Bradyrhizobium)94,(Mesorhizobium,Sinorhizobium)100)97)97);
((((Pasteurella,Mannheimia)60,Haemophilus)100,Buchnera)100,(Borrelia,Borrelia));
(Pyrobaculum,(((Sulforobus,Sulforobus)100,Aeropyrum)66,(((((Methanobacterium,Methanobacterium)100,(Methanopyrus,Methanobacterium)32)22,(Pyrococcus,(Thermococcus,(Pyrococcus,Pyrococcus)76)49)100)16,Nanoarchaeum)20,((((Thermoplasma,Thermoplasma)62,Picrophilus)100,Archhaeoglobus)79,((Methanosarcina,Methanosarcina)100,(Halobacterium,Haroarcula)100)51)61)73)73);
((Caulobacter,((Sinorhizobium,Agrobacterium)52,(Mesorhizobium,(Brucella,(Brucella,Brucella)81)100)76)97)58,(((((Vibrio,Vibrio)100,Idiomarina)45,Legionella)25,Francizella)63,(Xanthomonas,(Xanthomonas,Xanthomonas)54)100)100);
(((Aeropyrum,Pyrobaculum)69,Aquifex)100,(Sulforobus,Sulforobus));
(Pyrobaculum,(Aeropyrum,(Sulforobus,Sulforobus)98)98);
(((((Corynebacterium,Nocardia)84,Streptomyces)100,Nostos)95,(Lactobacillus,(Streptococcus,Neisseria)100)100)100,(Streptococcus,Streptococcus));
((Oceanobacillus,(Geobacillus,(Bacillus,Bacillus)95)77)78,((Vibrio,(Pseudomonas,(((Bordetella,Bordetella)77,Bordetella)100,((Rhodopseudomonas,Bradyrhizobium)100,Silicibacter)30)30)56)80,((Acinetobacter,(Agrobacterium,Pseudomonas)97)61,(Corynebacterium,(Streptomyces,Streptomyces)100)47)95)95);
(Clostridium,(((((Xanthomonas,Xanthomonas)83,Xanthomonas)100,(Nocardia,(Streptomyces,Streptomyces)97)99)96,Rickettsia)100,Lactococcus));
((Methanosarcina,Methanosarcina)100,((((Streptococcus,Streptococcus)96,Streptococcus)95,Bacillus)100,(Streptomyces,Streptomyces)96)96);
(((Erwinia,(Yersinia,Yersinia)100)56,((Salmonella,(Escherichia,Shigella)100)100,Photorhabdus)43)100,((Corynebacterium,Nocardia)89,(Propionibacterium,(Bifidobacterium,(Streptomyces,Streptomyces)100)84)54)54);
(Rhodopseudomonas,((((Idiomarina,(((Bordetella,Bordetella)100,(Ralstonia,(Burcholderia,Burcholderia)100)100)66,Azoarcus)100)95,(((Salmonella,Escherichia)100,Erwinia)71,(Photorhabdus,(Yersinia,Yersinia)100)80)100)81,(Pseudomonas,Pseudomonas)100)88,(Xanthomonas,Xanthomonas)100)100);
(Treponema,(Francizella,((((((Idiomarina,(Vibrio,Vibrio)100)49,Vibrio)83,Nitrosomonas)75,Xanthomonas)72,Acinetobacter)53,(Chromobacterium,Ralstonia)100)38)38);
(((((Rhodopseudomonas,Bradyrhizobium)61,Agrobacterium)98,Caulobacter)52,(Brucella,(Brucella,Brucella)66)100)100,(Pseudomonas,Pseudomonas));
(((Mycobacterium,Mycobacterium)100,Nocardia)100,(Halobacterium,Haroarcula));
((((Geobacillus,(Archhaeoglobus,(Mesorhizobium,(Brucella,(Brucella,Brucella)80)99)100)52)13,(Wolbachia,Thermoanaerobacter)51)36,Clostridium)67,(Methanobacterium,(Methanosarcina,Methanosarcina)100)100);
(((((((Brucella,Brucella)78,Brucella)100,(Mesorhizobium,(Agrobacterium,Sinorhizobium)100)58)66,(Bartonella,Bartonella)100)96,(Rhodopseudomonas,Bradyrhizobium)100)100,Gluconobacter)100,(Porphyromonas,(Bacteroides,Bacteroides)100)100);
((Rhodopseudomonas,Bradyrhizobium)100,((Gluconobacter,(Xanthomonas,(Xanthomonas,Xanthomonas)98)100)87,((Silicibacter,Sinorhizobium)99,(Methylococcus,(Acinetobacter,(Pseudomonas,(Pseudomonas,Pseudomonas)100)97)91)100)95)95);
(((Enterococcus,Lactococcus)90,Bacillus)100,(Xanthomonas,Bifidobacterium));
(Desulfovibrio,(Neisseria,(Bordetella,Chromobacterium)65)65);
(Bacillus,(Shewanella,(((Vibrio,Salmonella)50,Chromobacterium)42,((((Brucella,Brucella)69,Brucella)100,Pseudomonas)37,(Burcholderia,Burcholderia)100)79)100)100);
(Leptospira,(((Bacteroides,Bacteroides)100,Porphyromonas)75,Chlorobium));
(Geobacillus,(Campylobacter,(Synechococcus,(Chromobacterium,(Vibrio,(Vibrio,Vibrio)98)100)80)38)38);
((Desulfovibrio,Bdellovibrio)55,(Azoarcus,(Pseudomonas,(Pseudomonas,Pseudomonas)100)75)75);
(Bacillus,((Caulobacter,Burcholderia)32,(Mesorhizobium,(((Xanthomonas,((Pseudomonas,Pseudomonas)30,(Neisseria,Bacillus)58)7)15,Idiomarina)24,(Streptomyces,(Sinorhizobium,Bradyrhizobium)37)20)21)23)23);
((((((Pasteurella,((Xanthomonas,Xanthomonas)99,(Pseudomonas,Pseudomonas)62)48)31,Acinetobacter)48,((Shigella,Escherichia)100,(Yersinia,Yersinia)100)81)58,Fusobacterium)99,(Vibrio,Sinorhizobium)100)100,(Picrophilus,(Halobacterium,Haroarcula)84)84);
(Bacillus,((((((Pseudomonas,Pseudomonas)46,Nocardia)15,Agrobacterium)17,Mesorhizobium)76,Acinetobacter)36,Shewanella));
(Clostridium,(((Enterococcus,Lactobacillus)96,(Listeria,Listeria)100)84,(Treponema,Thermoanaerobacter)90)90);
(((((Xanthomonas,Xanthomonas)60,Xanthomonas)80,Xylella)100,(Pseudomonas,(Pseudomonas,Pseudomonas)59)100)100,(Deinococcus,Propionibacterium));
(Helicobacter,((((((Erwinia,(Photorhabdus,(Chromobacterium,(Yersinia,Yersinia)100)74)67)84,(Salmonella,(Escherichia,Shigella)100)100)96,((Vibrio,(Vibrio,(Vibrio,Vibrio)17)18)97,(Pseudomonas,Shewanella)64)31)43,(Haemophilus,(Mannheimia,Pasteurella)95)100)99,Legionella)100,((Bartonella,((Brucella,Brucella)89,Brucella)100)79,((Sinorhizobium,Agrobacterium)77,((Silicibacter,Mesorhizobium)28,((Xanthomonas,(Xanthomonas,Xanthomonas)91)100,(Bordetella,(Bordetella,Bordetella)78)100)88)12)21)87)87);
(Methanosarcina,(Chlorobium,((Pirellula,Pirellula)100,(Gluconobacter,(Burcholderia,Burcholderia)100)100)100)100);
((Bacteroides,Bacteroides)100,((Desulfotalea,(Vibrio,(Vibrio,(Vibrio,Vibrio)100)83)76)83,(Shewanella,((Pseudomonas,(Pseudomonas,Pseudomonas)94)93,((Erwinia,(Escherichia,Shigella)100)57,(Yersinia,Yersinia)100)86)53)25)25);
(Nostos,((Thermosynechococcus,(Dehalococcoides,Gloeobacter)67)100,Synechosystis));
((Symbiobacterium,Clostridium)64,((((Bacillus,Geobacillus)98,(Bacillus,Bacillus)98)61,Oceanobacillus)99,(Streptomyces,Streptomyces)100)100);
(((Desulfovibrio,Pyrobaculum)100,Geobacter)100,(Nostos,Thermosynechococcus));
((((Pseudomonas,(Pseudomonas,Pseudomonas)74)99,((Burcholderia,Burcholderia)100,Acinetobacter)89)100,Silicibacter)100,(Mycobacterium,Mycobacterium));
(Shigella,(((Bordetella,Bordetella)67,Bordetella)100,(Chromobacterium,(Burcholderia,Burcholderia)100)90)90);
(Deinococcus,(((Pseudomonas,Burcholderia)84,Ralstonia)62,((Azoarcus,(Silicibacter,(Bradyrhizobium,Rhodopseudomonas)99)98)62,(Bordetella,(Bordetella,Bordetella)65)100)90)90);
(Clostridium,((((Pasteurella,Deinococcus)69,Corynebacterium)71,Clostridium)90,Mycoplasma));
(Ralstonia,(((Xanthomonas,Xanthomonas)100,Xanthomonas)100,(Pseudomonas,Pseudomonas)100)100);
(Clostridium,(Treponema,(((Lactobacillus,Lactobacillus)99,(Lactococcus,Lactobacillus)98)100,(Staphylococcus,Staphylococcus)100)99)99);
(Desulfotalea,(Zymomonas,(Gluconobacter,(Legionella,(Xanthomonas,Xanthomonas)100)34)51)51);
(((Vibrio,Vibrio)100,Chromobacterium)100,(Bacillus,Bacillus));
(Enterococcus,(((Legionella,(Nitrosomonas,Francizella)78)34,Nostos)93,(Yersinia,(Bacteroides,Bacteroides)100)93)93);
((Streptomyces,Treponema)65,(Lactobacillus,Lactobacillus));
(Gloeobacter,(((Xanthomonas,Xanthomonas)82,Xanthomonas)100,Shewanella));
(Pyrobaculum,(((((Pyrococcus,Pyrococcus)83,Pyrococcus)76,Thermococcus)100,Methanobacterium)66,((Nanoarchaeum,Picrophilus)64,(Methanobacterium,Methanobacterium)99)50)50);
((((Methanobacterium,(Methanobacterium,Methanobacterium)100)48,Methanopyrus)44,(Methanosarcina,Methanosarcina)100)100,(Gloeobacter,Nostos));
(Fusobacterium,((((Bacillus,Bacillus)99,Staphylococcus)87,Oceanobacillus)100,Francizella));
(Propionibacterium,(Streptococcus,(Mycoplasma,((Mycoplasma,Mycoplasma)92,(Mycoplasma,Mycoplasma)100)95)89)89);
(Bdellovibrio,(Pseudomonas,((Vibrio,(Bradyrhizobium,Ralstonia)54)38,(Silicibacter,Caulobacter)84)40)40);
(Aquifex,(Thermotoga,(Thermoanaerobacter,(Pirellula,Pirellula)100)78)78);
((Mycobacterium,Mycobacterium)100,(Sinorhizobium,(Azoarcus,Photorhabdus)100)100);
((((Streptomyces,Rhodopseudomonas)71,Nocardia)96,Chromobacterium)100,(Mycobacterium,Mycobacterium));
(Silicibacter,((Bordetella,Bordetella)100,Nitrosomonas));
(Pseudomonas,(((Caulobacter,Zymomonas)83,(Bradyrhizobium,Rhodopseudomonas)100)92,((((Brucella,Brucella)46,Brucella)100,Agrobacterium)46,(Mesorhizobium,(Bartonella,Bartonella)100)24)100)100);
(Geobacter,(Pseudomonas,(Pseudomonas,(Azoarcus,Pseudomonas)81)51)51);
(Nostos,((Ralstonia,Chromobacterium)99,(Shewanella,((Vibrio,Vibrio)99,(Yersinia,Yersinia)100)94)99)99);
(((Pseudomonas,Pseudomonas)74,Pseudomonas)100,(Ralstonia,(Burcholderia,Burcholderia)100)100);
((Mesorhizobium,Caulobacter)94,(Streptomyces,Streptomyces));
(Symbiobacterium,(Bacteroides,(Geobacillus,(Bacillus,Bacillus)100)67)67);
((Staphylococcus,Staphylococcus)100,(Chromobacterium,Acinetobacter));
(Fusobacterium,(Streptococcus,(Bacillus,Bacillus)100)100);
((Burcholderia,Burcholderia)100,(((Photorhabdus,(Acinetobacter,(Yersinia,Yersinia)100)53)36,(Salmonella,(Shigella,Escherichia)100)100)99,(Chromobacterium,((Pseudomonas,(Pseudomonas,Pseudomonas)39)100,((Idiomarina,Shewanella)92,(Vibrio,(Vibrio,(Vibrio,Vibrio)75)100)100)99)45)63)63);
(((((((((Yersinia,Yersinia)100,Photorhabdus)42,(Erwinia,(Salmonella,(Escherichia,Shigella)99)97)84)97,(Vibrio,((Vibrio,Vibrio)63,Vibrio)100)97)28,((Haemophilus,Coxiella)40,Shewanella)19)21,Idiomarina)39,(Pseudomonas,(Pseudomonas,Pseudomonas)61)98)75,Methylococcus)92,((Neisseria,Chromobacterium)42,((Ralstonia,(Burcholderia,Burcholderia)100)73,(Azoarcus,(Bordetella,(Bordetella,Bordetella)87)100)40)60)60);
(Clostridium,(Lactobacillus,(Listeria,Listeria)100)100);
(Wolinella,(((((((Erwinia,(Salmonella,(Escherichia,Shigella)100)100)60,Photorhabdus)42,(Yersinia,Yersinia)100)100,(Mannheimia,Pasteurella)100)76,(Vibrio,(Vibrio,(Vibrio,Vibrio)88)71)99)55,Shewanella)56,(Idiomarina,((Pseudomonas,(Pseudomonas,Pseudomonas)36)100,(Methylococcus,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)84)100)100)76)97)72)72);
(Sinorhizobium,((Bordetella,(Bordetella,Bordetella)69)100,Ralstonia));
((Bacillus,Bacillus)100,(Idiomarina,((Bacteroides,Porphyromonas)37,(Bordetella,Bordetella)100)45)45);
(Staphylococcus,(Propionibacterium,(Bifidobacterium,Leifsonia)87)87);
(Dehalococcoides,(((Yersinia,Yersinia)100,(Nitrosomonas,Azoarcus)93)41,(Idiomarina,(Pirellula,Pirellula)100)57)57);
(Thermotoga,(Thermoanaerobacter,(Oceanobacillus,(Pirellula,Pirellula)100)44)44);
(Nocardia,((Xanthomonas,Streptomyces)40,Rhodopseudomonas));
(Clostridium,((Vibrio,Ralstonia)94,Escherichia));
(((((((((((((((Campylobacter,(Helicobacter,(Wolinella,Helicobacter)48)99)100,Bdellovibrio)26,(Desulfotalea,((((Treponema,Treponema)97,(Borrelia,Borrelia)100)82,Leptospira)25,Geobacter)13)9)4,Desulfovibrio)3,(Gloeobacter,((Prochlorococcus,Synechococcus)100,(Synechosystis,(Thermosynechococcus,Nostos)32)72)87)95),(((((Mycoplasma,(Mycoplasma,Mycoplasma)58)100,Phytoplasma)27,(Mycoplasma,(Mycoplasma,(Ureaplasma,(Mycoplasma,(Mycoplasma,Mycoplasma)100)33)45)73)24)4,((((Bacillus,Bacillus)100,(Bacillus,Bacillus)96)18,(((Bacillus,(((Listeria,Listeria)100,(Enterococcus,(Lactococcus,(Streptococcus,((Streptococcus,Streptococcus)53,(Streptococcus,Streptococcus)38)56)99)88)70)15,(Staphylococcus,Staphylococcus)100)3)4,Oceanobacillus)15,(Lactobacillus,(Lactobacillus,Lactobacillus)96)85)17)21,Geobacillus)91)4,(((Dehalococcoides,Symbiobacterium)27,Aquifex)11,(Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)87)99)64)15)),((Thermotoga,((Parachlamydia,((Chlamydophila,Chlamydophila)43,(Chlamydophila,Chlamydophila)35)100)100,((Porphyromonas,(Bacteroides,Bacteroides)100)100,(Pirellula,Pirellula)100)41)21)9,(Fusobacterium,Chlorobium)30)),(Deinococcus,Thermus)95)2,(((Gluconobacter,(Zymomonas,((Silicibacter,(Caulobacter,((Agrobacterium,Sinorhizobium)96,(Mesorhizobium,((Brucella,(Brucella,Brucella)54)100,(Bartonella,Bartonella)100)53)42)62)43)62,(Rhodopseudomonas,Bradyrhizobium)100)74)50)53,(((Legionella,(Methylococcus,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)72)85)100)23)14,((Shewanella,((Idiomarina,((((Buchnera,(Wigglesworthia,Blochmannia)60)29,Buchnera)58,((((Yersinia,Yersinia)100,Photorhabdus)54,Erwinia)44,(Salmonella,(Shigella,Escherichia)57)68)78)6,(Mannheimia,(Pasteurella,Haemophilus)88)96)33)11,(Vibrio,(Vibrio,(Vibrio,Vibrio)55)70)100)38)56,((Neisseria,Chromobacterium)77,((Azoarcus,((Bordetella,(Bordetella,Bordetella)48)100,(Ralstonia,(Burcholderia,Burcholderia)100)81)97)68,Nitrosomonas)25)59)21)17,(((Pseudomonas,(Pseudomonas,Pseudomonas)80)100,(Acinetobacter,Francizella)68)46,Coxiella)34)79)31,(Rickettsia,(Rickettsia,Rickettsia)71)100)6)3,(Tropheryma,(((((Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)56,(Corynebacterium,(Corynebacterium,Corynebacterium)98)93)83,(Propionibacterium,(Streptomyces,Streptomyces)100)46)22,Leifsonia)41,Bifidobacterium)23)100)28,((Wolbachia,Wolbachia)100,(Ehrlichia,Anaplasma)92)92)100,((Methanosarcina,Methanosarcina)100,(Halobacterium,Haroarcula)98)81)66,(Archhaeoglobus,((Thermoplasma,Thermoplasma)63,Picrophilus)100)27)21,((Aeropyrum,(Sulforobus,Sulforobus)93)44,(Pyrobaculum,Nanoarchaeum)21)4)13,((Methanobacterium,(Methanobacterium,Methanobacterium)100)31,(Methanopyrus,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)46)98)94)59)59);
(Pyrobaculum,((Sulforobus,Sulforobus)100,(Aeropyrum,((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)95)100)100,(((Methanobacterium,Methanobacterium)100,Methanopyrus)41,(Methanobacterium,((Picrophilus,(Thermoplasma,Thermoplasma)100)100,((Archhaeoglobus,(Methanosarcina,Methanosarcina)100)71,(Nanoarchaeum,(Haroarcula,Halobacterium)100)52)35)31)50)40)75)46)46);
(Thermotoga,(((Staphylococcus,Staphylococcus)100,(Lactobacillus,Lactobacillus)94)95,((Lactococcus,Streptococcus)100,(((Symbiobacterium,(Pseudomonas,Pseudomonas)98)57,((Salmonella,(Escherichia,Shigella)100)99,(Pasteurella,(Pirellula,Pirellula)100)38)37)9,(((((Bacillus,Oceanobacillus)47,(Bacillus,Bacillus)96)36,(Chromobacterium,Bacillus)85)23,Geobacillus)15,(((Propionibacterium,Corynebacterium)87,(Streptomyces,Streptomyces)100)49,(Yersinia,Yersinia)100)30)13)31)59)59);
(Staphylococcus,(Treponema,(Pirellula,Pirellula)100)100);
(Geobacter,(Photorhabdus,(Salmonella,Escherichia)95)95);
((Oceanobacillus,Bacillus)78,(Agrobacterium,(Lactococcus,(Salmonella,(Escherichia,Shigella)99)100)100)100);
(Bacteroides,(((((Lactococcus,Streptococcus)43,Streptococcus)18,(Streptococcus,Streptococcus)28)34,Streptococcus)96,Lactobacillus));
(((Pseudomonas,Methylococcus)54,Acinetobacter)100,(Mesorhizobium,Sinorhizobium));
((Brucella,(Brucella,Brucella)99)100,(Azoarcus,(Burcholderia,Burcholderia)100)100);
(((Enterococcus,(Streptococcus,Streptococcus)95)59,Lactobacillus)68,(Acinetobacter,(Nocardia,(Deinococcus,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)100)100)100)45)51)51);
(((((Bordetella,Bordetella)63,Bordetella)100,Pseudomonas)100,Azoarcus)100,(Sinorhizobium,Mesorhizobium));
(((Bordetella,Bordetella)89,Bordetella)100,(Bradyrhizobium,Rhodopseudomonas));
(Clostridium,((Bacillus,Bacillus)59,Bacillus));
(((Geobacter,Shewanella)100,Chromobacterium)100,(Mycobacterium,Mycobacterium));
((Zymomonas,Gluconobacter)100,(Yersinia,Yersinia));
(Bradyrhizobium,(Pseudomonas,(Burcholderia,Burcholderia)64)64);
(Pyrobaculum,(Aeropyrum,(Sulforobus,Sulforobus)70)70);
((Bordetella,(Bordetella,Bordetella)98)100,(Pseudomonas,(Erwinia,(Yersinia,Yersinia)100)49)49);
(Synechococcus,(Vibrio,(Vibrio,(Brucella,Brucella)100)100)100);
(((Xanthomonas,Xanthomonas)93,Xanthomonas)100,(Pirellula,Pirellula));
(Pseudomonas,(Nitrosomonas,((Azoarcus,Ralstonia)30,(((Bordetella,Bordetella)57,Bordetella)100,(Burcholderia,Burcholderia)100)99)39)39);
(Azoarcus,(Xanthomonas,(Xanthomonas,Xylella)52)52);
(Bradyrhizobium,(Photorhabdus,(Yersinia,Yersinia)100)100);
(Nostos,((Bradyrhizobium,Desulfovibrio)84,Pseudomonas));
(((Pyrococcus,(Pyrococcus,Pyrococcus)54)93,Thermococcus)100,(Aquifex,(Thermoanaerobacter,(Methanobacterium,Archhaeoglobus)98)91)91);
(Azoarcus,((Nostos,Synechosystis)52,(Prochlorococcus,Synechococcus)100)100);
(Lactococcus,(((Clostridium,Clostridium)65,Clostridium)99,Symbiobacterium));
(Enterococcus,((((((((Sinorhizobium,(Pseudomonas,Pseudomonas)86)73,Silicibacter)63,((Brucella,Brucella)64,Brucella)100)75,Mesorhizobium)62,Rhodopseudomonas)32,Agrobacterium)100,(Deinococcus,Bradyrhizobium)74)100,(Bacillus,(Salmonella,(Shigella,Escherichia)100)100)66)66);
(Listeria,(((((Vibrio,Vibrio)55,Vibrio)70,Vibrio)100,(Pirellula,Pirellula)100)100,(Corynebacterium,Corynebacterium)100)100);
(Pyrobaculum,((Aeropyrum,(Sulforobus,Sulforobus)96)98,(Nanoarchaeum,((((((Methanobacterium,Methanobacterium)99,Archhaeoglobus)52,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)83)84)100)57,Methanopyrus)14,(Methanobacterium,((Halobacterium,Haroarcula)100,(Methanosarcina,Methanosarcina)100)50)35)42,(Picrophilus,(Thermoplasma,Thermoplasma)100)100)38)83)83);
(Desulfovibrio,((Chromobacterium,Neisseria)66,Bordetella));
(Thermotoga,(((Synechosystis,Nostos)47,Thermosynechococcus)90,Gloeobacter));
(((Mycobacterium,Mycobacterium)100,Propionibacterium)100,(Haroarcula,Halobacterium));
(((((((((((Yersinia,Yersinia)100,(Photorhabdus,Erwinia)38)63,(Salmonella,(Shigella,Escherichia)100)73)83,((Haemophilus,Mannheimia)83,Pasteurella)90)87,(Vibrio,(Vibrio,(Vibrio,Vibrio)61)39)33)66,Shewanella)47,Idiomarina)71,Desulfotalea)47,(Geobacter,(Chromobacterium,((Pseudomonas,Pseudomonas)41,Pseudomonas)100)47)83)58,((Bacteroides,Gloeobacter)90,Bdellovibrio)36)95,(Synechococcus,(Nostos,Synechosystis)63)63);
((Sinorhizobium,Azoarcus)93,(Nostos,Gloeobacter));
(Aquifex,(((Campylobacter,Helicobacter)44,Tropheryma)61,(Thermotoga,(Porphyromonas,Bacteroides)100)64)64);
((Sulforobus,Sulforobus)100,(Nocardia,((Mesorhizobium,((Chlorobium,Azoarcus)74,(Agrobacterium,Sinorhizobium)100)96)94,(((((Methylococcus,Chromobacterium)21,(Burcholderia,Burcholderia)100)35,Ralstonia)33,((Mycobacterium,Mycobacterium)100,(Pseudomonas,(Pseudomonas,Pseudomonas)67)80)74)100,(Thermus,(((Silicibacter,Bradyrhizobium)90,Rhodopseudomonas)64,(Brucella,(Brucella,Brucella)79)100)100)97)36)95)95);
((((Brucella,Brucella)78,Brucella)100,(Bradyrhizobium,(Mesorhizobium,(Agrobacterium,Sinorhizobium)75)50)49)89,(Geobacillus,(Listeria,Listeria)100)100);
(Vibrio,(Prochlorococcus,(Synechosystis,Nostos)100)100);
((Caulobacter,Legionella)99,(Streptomyces,(Mycobacterium,Mycobacterium)100)100);
(((((Yersinia,Yersinia)100,(Erwinia,(Salmonella,(Shigella,Escherichia)96)100)25)32,Photorhabdus)77,(Pasteurella,Mannheimia)98)100,(Listeria,Listeria));
(Clostridium,(Desulfovibrio,(Zymomonas,Bacteroides)89)89);
(Thermotoga,(Geobacillus,(Wolinella,(Nocardia,((Mycobacterium,Mycobacterium)100,(Bordetella,Bordetella)100)97)100)78)78);
(Thermotoga,((Propionibacterium,Salmonella)62,(Mesorhizobium,(Staphylococcus,Staphylococcus)100)85)85);
((((((Brucella,Brucella)83,Brucella)100,Mesorhizobium)98,(Agrobacterium,Sinorhizobium)99)100,Rhodopseudomonas)100,((Haemophilus,Pasteurella)100,(Salmonella,(Erwinia,(Yersinia,Yersinia)100)67)100)100);
(Helicobacter,(((Chlamydophila,(Chlamydophila,Chlamydophila)81)54,Chlamydophila)74,Parachlamydia));
(Caulobacter,(Nocardia,(Mycobacterium,Mycobacterium)100)100);
(((Bordetella,Bordetella)99,Bordetella)100,(Pseudomonas,Pseudomonas));
(Nostos,((Xanthomonas,Xanthomonas)100,(Pirellula,Pirellula)100)100);
(Methanosarcina,(Vibrio,(Pseudomonas,Acinetobacter)98)98);
((Azoarcus,((Chromobacterium,Coxiella)69,Methylococcus)39)78,(Legionella,Acinetobacter));
((((((Pyrococcus,(Pyrococcus,Thermococcus)32)100,(Methanopyrus,(Methanobacterium,(Methanobacterium,Methanobacterium)99)47)61)32,(((Haroarcula,Halobacterium)100,(Methanosarcina,Methanosarcina)100)66,Archhaeoglobus)74)35,(Picrophilus,Thermoplasma)100)29,(Aeropyrum,(Sulforobus,Sulforobus)83)78)58,((Nanoarchaeum,Pyrobaculum)89,((Porphyromonas,Bacteroides)99,(Pirellula,Pirellula)100)92)92);
(Pyrobaculum,((((Pyrococcus,Pyrococcus)100,Thermococcus)91,Pyrococcus)100,(Halobacterium,Haroarcula)100)100);
(Campylobacter,(Mycoplasma,(Mycoplasma,(Mycoplasma,(Ureaplasma,Mycoplasma)58)26)32)32);
(Clostridium,((Geobacillus,(Bacillus,Bacillus)89)47,(Porphyromonas,Mesorhizobium)76)76);
(((Staphylococcus,Staphylococcus)52,Oceanobacillus)92,(Leifsonia,(Corynebacterium,(Lactobacillus,(Streptococcus,Streptococcus)80)91)83)83);
(Desulfotalea,((Vibrio,Shewanella)54,(Vibrio,(Vibrio,Vibrio)99)100)100);
(((((((Pseudomonas,Pseudomonas)63,Pseudomonas)100,(Mesorhizobium,Sinorhizobium)100)47,(Vibrio,Vibrio)99)58,Idiomarina)36,Bradyrhizobium)38,((Nocardia,(Streptomyces,Streptomyces)100)100,(Mycobacterium,Mycobacterium)100)100);
(Pyrobaculum,(Aeropyrum,((((Methanobacterium,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)99)100)96)99,Methanopyrus)73,Archhaeoglobus)58,(Sulforobus,(Halobacterium,Haroarcula)100)46)29)29);
(((Lactobacillus,Lactobacillus)100,Lactococcus)100,(Mesorhizobium,Azoarcus));
(Leptospira,((((Wolinella,Helicobacter)60,Campylobacter)100,Geobacter)82,Desulfotalea));
(Treponema,(((Corynebacterium,Corynebacterium)100,Corynebacterium)100,Geobacter));
(((Clostridium,Clostridium)98,Clostridium)91,(Bdellovibrio,(Bacillus,Bacillus)100)100);
((Sulforobus,Sulforobus)100,(Burcholderia,Burcholderia));
(Methanosarcina,((Bacillus,Bacillus)64,Bacillus));
((Porphyromonas,Chromobacterium)100,(Listeria,Listeria));
(Pseudomonas,((Rhodopseudomonas,Agrobacterium)100,Bradyrhizobium));
(Methanosarcina,(Chlorobium,((((Salmonella,(Shigella,Escherichia)100)100,(Erwinia,(Photorhabdus,(Yersinia,Yersinia)100)82)75)100,(Wigglesworthia,Blochmannia)50)100,(Pirellula,Pirellula)100)78)78);
(Vibrio,(((Pyrococcus,Pyrococcus)100,Pyrococcus)99,Thermococcus));
(Halobacterium,((((Haemophilus,Pasteurella)38,Mannheimia)100,(Vibrio,Vibrio)99)99,(Sulforobus,(Burcholderia,Burcholderia)100)100)100);
(((((((((Yersinia,Yersinia)100,Photorhabdus)36,(Salmonella,(Shigella,Escherichia)100)100)74,Erwinia)100,(Vibrio,(Vibrio,(Vibrio,Vibrio)75)100)96)58,((Haemophilus,Pasteurella)54,Mannheimia)100)85,Idiomarina)38,Shewanella)100,(Silicibacter,((Bradyrhizobium,Rhodopseudomonas)100,((Sinorhizobium,Agrobacterium)100,(Mesorhizobium,(Brucella,(Brucella,Brucella)68)100)96)100)98)98);
(Symbiobacterium,((Bacillus,Bacillus)100,(Shigella,Photorhabdus)100)100);
(Fusobacterium,(((Bacillus,Bacillus)96,Geobacillus)100,(Clostridium,Clostridium)100)100);
(Pyrobaculum,(Aeropyrum,(((Sulforobus,Sulforobus)94,Methanopyrus)34,(((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)85)92)99,(Methanobacterium,(Methanobacterium,Methanobacterium)92)82)29,(Archhaeoglobus,((Haroarcula,Halobacterium)100,(Methanosarcina,Methanosarcina)100)59)10)55)74)74);
(Caulobacter,(Xylella,(Xanthomonas,Xanthomonas)100)100);
(Leptospira,(Shewanella,((((Chromobacterium,Erwinia)25,(Burcholderia,Burcholderia)100)37,(Vibrio,(Vibrio,Vibrio)78)85)84,(Leifsonia,((Acinetobacter,Agrobacterium)69,(Caulobacter,Xanthomonas)85)62)100)74)74);
(Bacillus,((((Agrobacterium,Sinorhizobium)100,Bradyrhizobium)49,Mesorhizobium)85,(Streptomyces,Streptomyces)99)99);
((Bacillus,Bacillus)99,(Thermus,(Burcholderia,Burcholderia)100)100);
(((Xanthomonas,Xanthomonas)100,Xanthomonas)100,(Burcholderia,Ralstonia));
(((Bacillus,Bacillus)96,Bacillus)99,(Nostos,Streptomyces));
(Thermosynechococcus,((Bacteroides,Nostos)31,Leptospira));
(Pyrobaculum,(((Methanopyrus,Archhaeoglobus)26,((Pyrococcus,(Thermococcus,(Pyrococcus,Pyrococcus)49)62)99,(Methanosarcina,Methanosarcina)100)34)15,(((((Methanobacterium,Methanobacterium)78,Methanobacterium)35,Nanoarchaeum)11,(Aeropyrum,Haroarcula)49)4,((Sulforobus,Sulforobus)95,(Picrophilus,(Thermoplasma,Thermoplasma)77)100)46)31)31);
((Treponema,(Xanthomonas,Enterococcus)48)91,(Bacillus,(Bacillus,Bacillus)100)100);
((Enterococcus,Lactobacillus)100,((Nocardia,Nostos)63,(Corynebacterium,(Pirellula,Pirellula)100)66)66);
(((Mycoplasma,Mycoplasma)86,Mycoplasma)100,(Helicobacter,(Wolinella,(Helicobacter,Campylobacter)56)45)45);
(Pyrobaculum,((Sulforobus,Sulforobus)98,(Nanoarchaeum,(Aeropyrum,(Archhaeoglobus,((Methanobacterium,(Methanobacterium,Methanobacterium)100)45,(((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)83)80)100,Methanopyrus)86,(((Methanosarcina,Methanosarcina)100,(Halobacterium,Haroarcula)99)61,(Picrophilus,(Thermoplasma,Thermoplasma)100)100)24)21)43)54)51)45)45);
(Pyrobaculum,((Aeropyrum,(Sulforobus,Sulforobus)100)99,(Haroarcula,Halobacterium)100)100);
(Thermoanaerobacter,(Dehalococcoides,(Agrobacterium,(Geobacter,(Pirellula,Pirellula)100)86)97)97);
(Haroarcula,(((Anaplasma,Ehrlichia)52,Wolbachia)83,(Pirellula,Pirellula)100)100);
((((((Bacillus,Bacillus)100,(Bacillus,Bacillus)100)83,Geobacillus)80,Bacillus)89,Oceanobacillus)100,(Symbiobacterium,(Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)56)100)66)66);
(((Haroarcula,Clostridium)65,Pseudomonas)82,(Thermococcus,Pyrococcus));
(Neisseria,((Shewanella,Pseudomonas)78,(Haemophilus,Pasteurella)79)79);
(Streptomyces,((Brucella,Brucella)43,Brucella));
(((((((((Streptococcus,Streptococcus)61,Streptococcus)92,Streptococcus)100,Pasteurella)100,Mannheimia)100,Enterococcus)40,(Salmonella,(Shigella,Escherichia)100)100)55,(Vibrio,Vibrio)100)100,(Haroarcula,Halobacterium));
((((Nostos,Synechosystis)54,Thermosynechococcus)68,Gloeobacter)100,(Chlorobium,(Rhodopseudomonas,(Prochlorococcus,Synechococcus)82)100)100);
((Ralstonia,(Gluconobacter,(Bradyrhizobium,Rhodopseudomonas)100)55)100,((Mycoplasma,(Lactobacillus,Lactobacillus)99)41,(Streptococcus,(Oceanobacillus,(Bacillus,Bacillus)47)100)44)44);
(Chlamydophila,((Chlamydophila,(Chlamydophila,Chlamydophila)100)36,(Treponema,Parachlamydia)77)77);
(Caulobacter,(Xanthomonas,(Ralstonia,Pseudomonas)91)91);
(Geobacter,((Bordetella,Bordetella)39,Bordetella));
(Bacteroides,(Corynebacterium,(Streptomyces,Streptomyces)100)100);
(Enterococcus,(Silicibacter,(((((Xanthomonas,Xanthomonas)77,Xanthomonas)100,Caulobacter)99,Sinorhizobium)99,(Shewanella,Vibrio)97)61)61);
((Chromobacterium,(Silicibacter,Rhodopseudomonas)86)100,(Pirellula,Pirellula));
((Synechosystis,Nostos)100,((((Rhodopseudomonas,(Geobacter,Pseudomonas)59)98,Gloeobacter)54,Acinetobacter)100,((Caulobacter,(Bradyrhizobium,(Bordetella,(Bordetella,Bordetella)67)100)71)68,(Ralstonia,(Xanthomonas,Xanthomonas)100)84)96)96);
(Archhaeoglobus,((((Xanthomonas,Vibrio)53,Chromobacterium)75,Pseudomonas)92,Bacteroides));
((Xanthomonas,Xanthomonas)100,(Pirellula,Pirellula));
(Porphyromonas,(((Propionibacterium,Streptomyces)79,(Campylobacter,(Caulobacter,Burcholderia)68)85)66,(Idiomarina,(Pirellula,Pirellula)100)48)48);
(Symbiobacterium,((((Pseudomonas,(Vibrio,Vibrio)85)46,Legionella)25,Oceanobacillus)38,(Yersinia,Yersinia)100)100);
(Desulfovibrio,((Thermosynechococcus,Synechosystis)100,Dehalococcoides));
(Methanosarcina,(((Listeria,Listeria)100,(Staphylococcus,Staphylococcus)100)100,Dehalococcoides));
((Corynebacterium,Corynebacterium)100,(Pirellula,Pirellula));
((Azoarcus,Chromobacterium)50,(((((((Vibrio,(Vibrio,(Vibrio,Vibrio)71)100)98,((Blochmannia,(Photorhabdus,((Yersinia,Yersinia)100,(Erwinia,(Salmonella,(Shigella,Escherichia)100)100)28)58)92)45,(Mannheimia,(Haemophilus,Pasteurella)87)90)97)74,Shewanella)63,Idiomarina)71,Legionella)83,Pseudomonas)41,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)93)95)100)100);
(((Campylobacter,(Wolinella,Helicobacter)65)46,Helicobacter)100,(Ureaplasma,Mycoplasma));
(((((((((Bartonella,Bartonella)100,((Brucella,Brucella)100,Brucella)100)52,Mesorhizobium)47,(Agrobacterium,Sinorhizobium)56)96,(Bradyrhizobium,Rhodopseudomonas)99)42,(Silicibacter,Caulobacter)46)58,(Rickettsia,(Rickettsia,Rickettsia)88)100)39,(Wolbachia,Ehrlichia)98)96,((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)98)100)100,((Legionella,Coxiella)86,((Ralstonia,(Burcholderia,Burcholderia)100)88,(Nitrosomonas,((Azoarcus,(Neisseria,Chromobacterium)82)29,(Bordetella,(Bordetella,Bordetella)88)100)18)31)43)47)47);
(Picrophilus,((((((((Geobacillus,(((Staphylococcus,Staphylococcus)100,Bacillus)36,(Bacillus,Bacillus)100)8)31,(Treponema,(Porphyromonas,(Bacteroides,Bacteroides)100)99)59)2,(Bacillus,Bacillus)93)3,(Enterococcus,(Lactobacillus,Lactobacillus)100)19)22,(Oceanobacillus,(Mycoplasma,Fusobacterium)68)18)40,Coxiella)71,(Gluconobacter,(Silicibacter,(Burcholderia,Burcholderia)100)50)100)100,(Chlamydophila,(Chlamydophila,Chlamydophila)95)100)100);
(((((Bacillus,Bacillus)100,(Bacillus,Bacillus)99)86,Geobacillus)79,Staphylococcus)74,(Pseudomonas,(((Sinorhizobium,Silicibacter)66,Pseudomonas)73,(Corynebacterium,Corynebacterium)100)53)53);
(((((Xanthomonas,Xanthomonas)52,Xanthomonas)100,Pseudomonas)55,Pseudomonas)100,(Bordetella,Bordetella));
(Bdellovibrio,(((((((Bartonella,Bartonella)100,Mesorhizobium)35,((Brucella,Brucella)76,Brucella)100)46,(((Rhodopseudomonas,Bradyrhizobium)100,(Agrobacterium,Sinorhizobium)100)41,Caulobacter)24)69,Silicibacter)100,Azoarcus)71,Chromobacterium));
(Methanosarcina,(Fusobacterium,(Ralstonia,(Chromobacterium,Leptospira)81)40)40);
(Methanosarcina,(Idiomarina,(Silicibacter,((Escherichia,Shigella)100,(Bdellovibrio,(Streptococcus,(Bordetella,Bordetella)100)91)87)100)62)62);
((((Methanopyrus,(Methanobacterium,(Methanobacterium,Methanobacterium)99)92)90,(Archhaeoglobus,(Methanosarcina,Methanosarcina)100)80)57,(Haroarcula,Halobacterium)100)100,(Azoarcus,((Streptomyces,Streptomyces)100,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)100)100)100);
((((Vibrio,Vibrio)49,Vibrio)97,Shewanella)100,(Streptomyces,(Mycobacterium,Mycobacterium)100)100);
(Thermoanaerobacter,(Treponema,(((Vibrio,((Bacillus,Bacillus)100,(((Campylobacter,Caulobacter)32,(Streptomyces,Propionibacterium)100)41,(Chromobacterium,((Photorhabdus,(Yersinia,Yersinia)100)100,(Ralstonia,Burcholderia)57)55)99)69)88)98,Enterococcus)32,(Clostridium,(Lactobacillus,(Streptococcus,Streptococcus)100)82)30)31)31);
((Photorhabdus,(Yersinia,Yersinia)100)97,(Brucella,(Mesorhizobium,Agrobacterium)100)100);
(Gloeobacter,(Propionibacterium,(Caulobacter,((Corynebacterium,(Corynebacterium,Corynebacterium)94)100,(Streptomyces,Streptomyces)92)61)57)57);
(Desulfotalea,(((Agrobacterium,Mesorhizobium)44,Sinorhizobium)60,Silicibacter));
((Methanopyrus,Haroarcula)100,(Mycobacterium,Mycobacterium));
(Methanosarcina,((Nitrosomonas,Chromobacterium)73,Azoarcus));
((((Geobacter,(((Vibrio,(Vibrio,(Vibrio,Vibrio)95)42)95,(Shewanella,(Yersinia,(Erwinia,(Salmonella,(Escherichia,Shigella)100)100)77)99)88)92,(Chromobacterium,Azoarcus)43)22)15,(((Pseudomonas,(Pseudomonas,Pseudomonas)68)100,(Xanthomonas,(Xanthomonas,Xanthomonas)79)100)44,Mesorhizobium)99)45,Burcholderia)100,(Pirellula,Pirellula));
(Fusobacterium,(((Vibrio,((Bacillus,Bacillus)99,(Neisseria,Haemophilus)100)75)65,((Bacillus,Oceanobacillus)97,(((Pseudomonas,(Acinetobacter,Agrobacterium)49)99,(Corynebacterium,Corynebacterium)100)100,(Staphylococcus,Staphylococcus)100)70)31)81,(Vibrio,Vibrio)100)100);
(Sulforobus,(Deinococcus,(Silicibacter,Bradyrhizobium)100)100);
(Symbiobacterium,((((Xanthomonas,Xanthomonas)100,Xanthomonas)98,Xylella)100,Rickettsia));
(Bacteroides,(Xanthomonas,(Xanthomonas,Xanthomonas)98)98);
((((((Bacillus,Bacillus)100,(Bacillus,Bacillus)100)54,Geobacillus)76,Bacillus)31,Oceanobacillus)73,(Symbiobacterium,(Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)78)100)100)100);
(Nostos,(Acinetobacter,((Azoarcus,Mesorhizobium)57,((Xanthomonas,(Xanthomonas,Xanthomonas)97)100,(Pseudomonas,(Streptomyces,Streptomyces)100)65)55)67)67);
(Gluconobacter,(Acinetobacter,((Francizella,Legionella)60,((Vibrio,(Vibrio,(Vibrio,Vibrio)57)65)100,(Methylococcus,(Shewanella,((Pseudomonas,(Pseudomonas,Pseudomonas)78)41,((Xanthomonas,Xanthomonas)100,(Bordetella,(Bordetella,Bordetella)93)100)100)54)42)35)56)44)44);
(Clostridium,((Gloeobacter,Leptospira)76,Treponema));
((((((Lactobacillus,Lactobacillus)72,Enterococcus)66,(Lactococcus,Streptococcus)55)31,(Listeria,Listeria)99)6,Bacillus)39,((Treponema,Oceanobacillus)45,((Staphylococcus,Staphylococcus)100,(Mannheimia,(Mesorhizobium,Bradyrhizobium)100)65)44)44);
(Halobacterium,((Silicibacter,Mesorhizobium)100,(Mycobacterium,Mycobacterium)100)100);
(Wolbachia,(((Chlamydophila,Chlamydophila)100,Chlamydophila)100,Chlamydophila));
(Thermotoga,(Clostridium,(Staphylococcus,Deinococcus)51)51);
(Archhaeoglobus,(((((Bacillus,Bacillus)100,(Deinococcus,Idiomarina)100)98,Photorhabdus)34,Pyrococcus)100,Thermoanaerobacter));
(Streptomyces,((Deinococcus,Leifsonia)100,Streptomyces));
(Desulfotalea,(Sinorhizobium,(Escherichia,(Idiomarina,(Vibrio,(Vibrio,Vibrio)78)100)32)37)37);
((Corynebacterium,Corynebacterium)100,(Pseudomonas,Mesorhizobium));
((((Mesorhizobium,Agrobacterium)55,Ralstonia)100,(Bradyrhizobium,Rhodopseudomonas)100)100,(Streptomyces,Streptomyces));
(Lactobacillus,(((((((((Vibrio,Vibrio)38,Vibrio)57,Vibrio)97,Idiomarina)75,Shewanella)39,Chromobacterium)53,Desulfovibrio)100,Wolinella)27,(Bradyrhizobium,Geobacter)94)94);
(((Desulfovibrio,Geobacter)87,Bdellovibrio)100,(Pirellula,Pirellula));
((Bacteroides,Bacteroides)100,(Sulforobus,Sulforobus));
(Pyrobaculum,(Aeropyrum,(Archhaeoglobus,(Thermoplasma,Thermoplasma)100)81)81);
((Sinorhizobium,Brucella)31,(Bordetella,Xanthomonas));
(Nocardia,(Mesorhizobium,(Rhodopseudomonas,Bradyrhizobium)82)82);
(((((Archhaeoglobus,Aquifex)99,Fusobacterium)55,Methanobacterium)65,Thermotoga)83,((Picrophilus,(Thermoplasma,Thermoplasma)97)94,(Sulforobus,Sulforobus)100)100);
(Thermotoga,(Pyrococcus,(Pyrococcus,Pyrococcus)60)60);
(Leifsonia,(Zymomonas,(Gluconobacter,(((Bradyrhizobium,Rhodopseudomonas)100,(Silicibacter,Caulobacter)13)14,((Mesorhizobium,(Agrobacterium,Sinorhizobium)68)65,((Brucella,(Brucella,Brucella)80)100,(Bartonella,Bartonella)100)37)90)22)47)47);
(Methanopyrus,(Chromobacterium,(Bordetella,Bordetella)100)100);
(Bacillus,((Desulfovibrio,Bacillus)99,(Mesorhizobium,(Streptomyces,Bordetella)69)41)41);
((Brucella,(Brucella,Brucella)70)100,(Acinetobacter,(Bordetella,(Xanthomonas,Xanthomonas)100)71)71);
((Bradyrhizobium,Rhodopseudomonas)100,(Desulfovibrio,Geobacter));
(((Bradyrhizobium,Rhodopseudomonas)100,(Caulobacter,Silicibacter)100)46,(((Agrobacterium,(Mesorhizobium,(Acinetobacter,Erwinia)95)36)37,(Pseudomonas,(Bordetella,(Pseudomonas,Pseudomonas)96)41)54)57,(Xanthomonas,Xanthomonas)100)100);
(Streptomyces,(Bradyrhizobium,((Burcholderia,Burcholderia)100,(Vibrio,Vibrio)100)79)79);
(((Bordetella,Bordetella)90,Bordetella)100,(Tropheryma,(Nocardia,Propionibacterium)77)77);
((Bacillus,Lactobacillus)89,(Vibrio,(Burcholderia,Burcholderia)100)100);
(Methanobacterium,(((Chlorobium,Nostos)72,Geobacter)52,(Desulfovibrio,(Shigella,Geobacillus)100)93)93);
(Mesorhizobium,(Methylococcus,((Pseudomonas,(Pseudomonas,Pseudomonas)75)100,(Burcholderia,Burcholderia)100)55)55);
((Streptomyces,Streptomyces)100,((((((Desulfotalea,Bradyrhizobium)46,(Agrobacterium,Sinorhizobium)74)79,Pseudomonas)72,Chromobacterium)88,Leifsonia)88,((Pseudomonas,(Photorhabdus,(Xanthomonas,(Xanthomonas,Xanthomonas)73)100)38)52,(Burcholderia,Burcholderia)100)100)100);
(((((Chlamydophila,Chlamydophila)100,Chlamydophila)46,Chlamydophila)100,Parachlamydia)100,(Bordetella,Bordetella));
(((Bacillus,Geobacillus)48,Bacillus)98,(Symbiobacterium,Thermoanaerobacter));
(Methanopyrus,(((((((Pseudomonas,(Idiomarina,(Shewanella,(Salmonella,Photorhabdus)100)52)93)70,((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)71)92)100,Neisseria)38)58,(Burcholderia,Burcholderia)100)48,Erwinia)99,Caulobacter)99,Treponema)73,(Vibrio,(Synechococcus,(Thermosynechococcus,(Synechosystis,Nostos)97)61)100)91)91);
(Gloeobacter,(Pseudomonas,((Leptospira,(Mesorhizobium,Sinorhizobium)100)61,(Bacteroides,Helicobacter)100)50)50);
(((Methanobacterium,Methanobacterium)61,(Methanosarcina,Methanosarcina)100)43,((Bacillus,Bacillus)100,(Thermus,(Wolinella,(((Geobacter,Desulfovibrio)46,Desulfotalea)100,((Pseudomonas,(Pseudomonas,Pseudomonas)68)100,(Shewanella,(Idiomarina,((Vibrio,(Vibrio,(Vibrio,Vibrio)57)77)98,(Salmonella,(Erwinia,((Yersinia,Yersinia)100,(Escherichia,Shigella)100)96)97)96)77)65)52)77)74)100)79)79);
(Photorhabdus,(Bordetella,(Bordetella,Bordetella)61)61);
((((((Rhodopseudomonas,(Ralstonia,(Burcholderia,((Xanthomonas,Xanthomonas)76,Xanthomonas)99)99)63)53,((Vibrio,(Vibrio,Vibrio)68)100,((Erwinia,((Yersinia,Yersinia)100,(Salmonella,(Escherichia,Shigella)87)100)56)92,(Pseudomonas,(Pseudomonas,Pseudomonas)72)100)88)70)36,Bdellovibrio)57,Leptospira)59,Acinetobacter)99,(Geobacillus,(Bacillus,Bacillus)100)100);
(Leptospira,((((Mycobacterium,Mycobacterium)100,Mycobacterium)100,Nocardia)99,(Corynebacterium,(Corynebacterium,Corynebacterium)100)100)100);
(Synechococcus,(Porphyromonas,((Chromobacterium,(Vibrio,Legionella)20)20,(Pseudomonas,Pseudomonas)100)48)48);
(((Synechosystis,Nostos)71,Thermosynechococcus)99,(Sinorhizobium,(Mycobacterium,Mycobacterium)100)100);
((Pyrobaculum,Desulfovibrio)100,(Sulforobus,Sulforobus));
(Corynebacterium,(Gluconobacter,(Brucella,(((Vibrio,(((Salmonella,(Escherichia,Shigella)100)100,(Photorhabdus,Erwinia)95)94,(Yersinia,Yersinia)100)96)94,(Haemophilus,Neisseria)100)44,((Zymomonas,Acinetobacter)56,(Bordetella,Bordetella)100)27)76)54)54);
(Symbiobacterium,((Bacillus,Bacillus)100,(Geobacillus,((Oceanobacillus,(Bacillus,Bacillus)100)62,(Bacillus,(Staphylococcus,Staphylococcus)100)96)39)20)20);
(((Pyrobaculum,Nanoarchaeum)79,Parachlamydia)52,(Methanosarcina,Methanopyrus));
((((Mycobacterium,(Mycobacterium,Mycobacterium)100)100,Propionibacterium)72,(Corynebacterium,(Corynebacterium,Corynebacterium)98)100)100,(Bordetella,(Bordetella,Bordetella)99)99);
(Staphylococcus,((Bifidobacterium,Mesorhizobium)97,(Photorhabdus,(Salmonella,(Shigella,Escherichia)97)100)63)63);
(Aquifex,(Clostridium,(Zymomonas,((Chromobacterium,(Vibrio,(Pseudomonas,(Erwinia,(Salmonella,(Escherichia,Shigella)100)100)100)99)100)73,((Pseudomonas,Xanthomonas)83,(Burcholderia,Burcholderia)100)39)86)100)100);
(Symbiobacterium,((Thermus,Chlorobium)90,(Bacillus,(Geobacillus,(((Bacillus,Bacillus)100,(Bacillus,Bacillus)100)50,(Oceanobacillus,(Staphylococcus,Staphylococcus)100)54)17)60)99)99);
((Bradyrhizobium,Mesorhizobium)100,(Mycobacterium,Mycobacterium));
((((((Rhodopseudomonas,(Ralstonia,(Burcholderia,Burcholderia)100)71)32,(Neisseria,Chromobacterium)79)99,(Vibrio,((Erwinia,(Yersinia,Yersinia)100)65,(Escherichia,Shigella)100)95)99)52,Desulfotalea)98,Leptospira)100,(Prochlorococcus,Synechococcus));
(Pyrobaculum,(((((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)96)60)94,(Archhaeoglobus,(Methanobacterium,Methanobacterium)65)54)29,(Sulforobus,Sulforobus)73)19,(Aeropyrum,(Methanobacterium,Methanopyrus)77)23)12,(Halobacterium,Haroarcula)100)100);
((((((Archhaeoglobus,(Methanosarcina,Methanosarcina)100)43,(Methanobacterium,Methanobacterium)88)52,((Picrophilus,Methanobacterium)49,((Pyrobaculum,Aeropyrum)60,(Sulforobus,Sulforobus)82)80)22)41,Methanopyrus)59,(Haroarcula,Halobacterium)100)100,(Wigglesworthia,Chlamydophila));
((Pirellula,Pirellula)100,(((Zymomonas,(Bordetella,(Bordetella,Bordetella)65)100)23,(Xylella,(Xanthomonas,Xanthomonas)92)35)21,(Caulobacter,(Vibrio,Shewanella)100)26)26);
(Clostridium,((Wolinella,(Buchnera,Wigglesworthia)98)75,((Bacillus,Bacillus)100,(Listeria,Listeria)100)89)89);
((Clostridium,Clostridium)46,(((Treponema,(Symbiobacterium,Thermoanaerobacter)95)85,Clostridium)46,(Oceanobacillus,(Bacillus,Bacillus)100)67)67);
(Thermotoga,((Mycobacterium,(Mycobacterium,Mycobacterium)100)100,(Fusobacterium,(((((((Rickettsia,(Rickettsia,Rickettsia)72)100,Caulobacter)52,(Gluconobacter,(((Mesorhizobium,(((Brucella,Brucella)82,Brucella)93,(Bartonella,Bartonella)100)41)40,(Agrobacterium,Sinorhizobium)100)92,((Bradyrhizobium,Rhodopseudomonas)100,Silicibacter)41)73)77)97,((Burcholderia,Burcholderia)100,((Bordetella,Bordetella)46,Bordetella)100)100)31,Chlorobium)1,((((Lactococcus,(((Streptococcus,Streptococcus)88,Streptococcus)74,Streptococcus)98)100,((Bacillus,Bacillus)48,(Geobacillus,((Bacillus,Bacillus)100,(Listeria,Listeria)100)11)10)32)64,Staphylococcus)97,((Symbiobacterium,Geobacter)46,(Thermoanaerobacter,(Clostridium,Clostridium)95)74)31)8)3,((Helicobacter,(Thermus,Leptospira)27)5,((Parachlamydia,((Chlamydophila,Chlamydophila)60,(Chlamydophila,Chlamydophila)52)100)97,(Mycoplasma,Mycoplasma)100)42)6)3)59)59);
(Symbiobacterium,(Lactobacillus,(((((Xylella,(Xanthomonas,Xanthomonas)98)100,Pseudomonas)81,Ralstonia)97,Mesorhizobium)100,(Corynebacterium,(Bordetella,Bordetella)100)98)100)100);
(((Lactococcus,Enterococcus)33,(Lactobacillus,Streptococcus)51)45,((Francizella,Helicobacter)40,(Mannheimia,(Haemophilus,Pasteurella)100)58)58);
(((Xanthomonas,Xanthomonas)82,Xanthomonas)100,(Porphyromonas,(Bacteroides,Bacteroides)100)100);
((Gluconobacter,Agrobacterium)38,(Pseudomonas,((Erwinia,(Vibrio,Vibrio)100)56,(Acinetobacter,(Xanthomonas,(Xanthomonas,Xanthomonas)100)100)54)16)16);
((((Burcholderia,Burcholderia)100,Ralstonia)70,(Bordetella,Bordetella)100)100,(Xanthomonas,(Xanthomonas,Xanthomonas)99)99);
(Treponema,(Bordetella,(Desulfovibrio,(Bdellovibrio,(Zymomonas,(Rhodopseudomonas,Bradyrhizobium)96)95)56)47)47);
(Clostridium,(Geobacillus,((Bacillus,Bacillus)99,(Bacillus,Bacillus)100)73)73);
(Bacillus,((Pseudomonas,Streptomyces)67,(Synechosystis,(Thermosynechococcus,Leptospira)68)100)100);
(Azoarcus,(Xanthomonas,(Xanthomonas,Xanthomonas)67)67);
(Gloeobacter,((Zymomonas,Caulobacter)41,(((Mesorhizobium,((Sinorhizobium,Agrobacterium)98,(Bartonella,((Brucella,Brucella)79,Brucella)100)68)60)93,(Silicibacter,Gluconobacter)25)38,(Bradyrhizobium,Rhodopseudomonas)100)48)48);
(Streptococcus,(Synechosystis,(Lactococcus,(Azoarcus,(Nocardia,Leptospira)55)32)48)48);
(Zymomonas,(((Photorhabdus,(Erwinia,(Yersinia,Yersinia)100)89)100,Pasteurella)99,Chromobacterium));
(Thermoanaerobacter,(Bacillus,((Bacillus,(Bacillus,Bacillus)100)59,(Lactococcus,(Enterococcus,(Listeria,Listeria)100)77)57)65)65);
(Fusobacterium,((Silicibacter,(Bacteroides,(Helicobacter,Legionella)48)29)15,(Streptomyces,(Caulobacter,(Rhodopseudomonas,((Bartonella,Bartonella)100,(Brucella,(Brucella,Brucella)67)100)100)99)71)10)10);
(Pyrobaculum,((Aeropyrum,(Sulforobus,Sulforobus)99)62,((Archhaeoglobus,(((Methanobacterium,Methanobacterium)89,((Methanosarcina,Methanosarcina)100,(Haroarcula,Halobacterium)100)70)44,Methanobacterium)34)24,(Methanopyrus,(((Pyrococcus,Pyrococcus)78,(Pyrococcus,Thermococcus)44)100,(Nanoarchaeum,(Picrophilus,(Thermoplasma,Thermoplasma)78)100)36)30)14)91)91);
(Nocardia,((Caulobacter,(Burcholderia,Burcholderia)100)91,(Chromobacterium,(Pseudomonas,(Bordetella,Bordetella)100)100)35)35);
(Treponema,((Mannheimia,Campylobacter)70,((Pseudomonas,(Vibrio,(Vibrio,Vibrio)39)91)90,((((((Erwinia,(Yersinia,Yersinia)100)76,(Photorhabdus,(Salmonella,(Escherichia,Shigella)100)91)53)98,Acinetobacter)75,Bradyrhizobium)59,((Pseudomonas,(Pirellula,Pirellula)100)89,(Burcholderia,Burcholderia)100)98)52,(Streptomyces,Streptomyces)100)97)41)41);
(Aquifex,((Chlamydophila,Parachlamydia)100,((Porphyromonas,(Bacteroides,Bacteroides)99)100,((Chlorobium,Desulfovibrio)16,(((((Thermus,Deinococcus)86,(((Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)85)100)37,((((((Lactobacillus,Lactobacillus)100,Lactobacillus)34,((Streptococcus,((Streptococcus,Streptococcus)58,Streptococcus)41)100,Enterococcus)40)82,((Oceanobacillus,(Staphylococcus,Staphylococcus)100)44,((Bacillus,Bacillus)100,(Geobacillus,((Listeria,Listeria)100,(Bacillus,Bacillus)83)14)16)28)32)44,Bacillus)95,(((Bdellovibrio,Leptospira)61,Dehalococcoides)53,Symbiobacterium)29)2)6,(Fusobacterium,(Helicobacter,(Wolinella,Helicobacter)75)100)32)13)7,((Treponema,Treponema)100,(Borrelia,Borrelia)100)86)12,((Gloeobacter,(Thermosynechococcus,((Synechosystis,Nostos)37,(Prochlorococcus,Synechococcus)100)37)70)89,(Bifidobacterium,(Tropheryma,((((Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)86,(Corynebacterium,(Corynebacterium,Corynebacterium)100)97)86,Propionibacterium)64,(Leifsonia,(Streptomyces,Streptomyces)100)62)48)19)72)20)2,(Geobacter,(Desulfotalea,((((Rickettsia,Rickettsia)75,Rickettsia)100,((Ehrlichia,Anaplasma)85,(Wolbachia,Wolbachia)95)100)47,(((((Bradyrhizobium,Rhodopseudomonas)100,(Silicibacter,(Mesorhizobium,((Brucella,(Brucella,Brucella)86)100,((Sinorhizobium,Agrobacterium)100,(Bartonella,Bartonella)100)42)57)92)33)35,(Zymomonas,Gluconobacter)48)25,Caulobacter)85,((((((Idiomarina,(Shewanella,((((Haemophilus,Mannheimia)77,Pasteurella)99,((Photorhabdus,(Erwinia,(Yersinia,Yersinia)100)86)87,(Salmonella,(Escherichia,Shigella)100)71)92)47,(Vibrio,(Vibrio,(Vibrio,Vibrio)62)78)81)3)18)71,(((Wigglesworthia,Blochmannia)78,(Buchnera,Buchnera)93)81,Legionella)35)3,((Acinetobacter,Methylococcus)13,((Coxiella,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)58)97)100)34,(Pseudomonas,(Pseudomonas,Pseudomonas)97)74)12)11)39,Francizella)35,((((Bordetella,(Bordetella,Bordetella)79)100,(Ralstonia,(Burcholderia,Burcholderia)100)82)72,(Nitrosomonas,Azoarcus)51)71,(Neisseria,Chromobacterium)94)78)60,(Pirellula,Pirellula)100)34)14)13)28)4)1)1)8)8);
(Synechosystis,((Nostos,Methylococcus)42,Geobacter));
(Corynebacterium,((Bacillus,Bacillus)35,Bacillus));
(((Azoarcus,Chromobacterium)66,Acinetobacter)87,((Wolbachia,Ehrlichia)97,(Rickettsia,(Rickettsia,Rickettsia)92)100)100);
(Archhaeoglobus,(Methylococcus,((((((((Erwinia,(Salmonella,(Escherichia,Shigella)100)94)35,(Yersinia,Yersinia)100)35,Photorhabdus)52,(Shewanella,(Vibrio,(Vibrio,(Vibrio,Vibrio)58)87)77)42)12,Idiomarina)20,(Haemophilus,(Pasteurella,Mannheimia)45)76)25,(Blochmannia,(Buchnera,Buchnera)59)54)19,(Francizella,(Acinetobacter,(Pseudomonas,(Pseudomonas,Pseudomonas)76)80)71)40)64)64);
(Thermus,(((((Azoarcus,Ralstonia)75,((Bordetella,Bordetella)80,Bordetella)100)81,Agrobacterium)55,Deinococcus)85,((Brucella,(Brucella,Brucella)70)100,(Burcholderia,Burcholderia)100)100)100);
(Leptospira,((Vibrio,Vibrio)100,Gluconobacter));
(Deinococcus,((((Xanthomonas,Xanthomonas)67,Xanthomonas)94,Shewanella)99,Pseudomonas));
(Gluconobacter,((Chromobacterium,Neisseria)92,((Bordetella,(Bordetella,Bordetella)82)100,(Ralstonia,(Burcholderia,Burcholderia)100)99)92)92);
(Methanosarcina,(Clostridium,(Bacillus,(Streptomyces,Silicibacter)100)75)75);
(Propionibacterium,((Caulobacter,Geobacter)37,(Azoarcus,(Shewanella,(Pseudomonas,(Pseudomonas,Pseudomonas)46)87)56)51)51);
(Bradyrhizobium,(((Burcholderia,Burcholderia)100,Ralstonia)100,Methylococcus));
(((((((Erwinia,(Yersinia,Yersinia)100)58,(Salmonella,(Escherichia,Shigella)100)100)86,((Mannheimia,Haemophilus)55,Pasteurella)100)99,(Vibrio,(Vibrio,Vibrio)95)92)100,(Desulfovibrio,Propionibacterium)48)95,Symbiobacterium)100,(Halobacterium,Haroarcula));
(Clostridium,(Bacillus,(Shewanella,Escherichia)100)100);
(Haroarcula,(Pseudomonas,(Propionibacterium,Streptococcus)97)97);
(Thermoplasma,(Thermotoga,((Leifsonia,(Bifidobacterium,(Propionibacterium,(Nocardia,(Streptomyces,Streptomyces)100)74)63)33)100,(Chromobacterium,Azoarcus)100)98)98);
(Ralstonia,((Rhodopseudomonas,Mesorhizobium)86,(Bradyrhizobium,(Gluconobacter,Brucella)100)97)97);
(Azoarcus,(Xanthomonas,(Vibrio,Vibrio)100)100);
((Bacteroides,Bacteroides)100,(Streptomyces,Streptomyces));
(Idiomarina,(Corynebacterium,(Corynebacterium,Corynebacterium)77)77);
((((Bacillus,Bacillus)75,Oceanobacillus)96,Bacillus)96,(Nostos,Sinorhizobium));
(Pyrobaculum,((Sulforobus,Sulforobus)100,(((((((Halobacterium,Haroarcula)100,Methanopyrus)29,Methanobacterium)53,((Archhaeoglobus,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)56)90)63)63,(((Methanosarcina,Methanosarcina)100,Methanobacterium)54,Methanobacterium)38)26)80,Nanoarchaeum)60,Aeropyrum)68,(Picrophilus,(Thermoplasma,Thermoplasma)93)100)98)98);
(Gloeobacter,((((Xanthomonas,Xanthomonas)99,(Pseudomonas,Pseudomonas)66)59,Acinetobacter)100,Deinococcus));
(((((Pseudomonas,(Pseudomonas,Pseudomonas)59)100,Nitrosomonas)100,(Shewanella,(Vibrio,(Vibrio,Vibrio)71)100)83)100,Idiomarina)100,(Bradyrhizobium,Mesorhizobium));
((Legionella,Erwinia)84,((Xanthomonas,Ralstonia)84,(Bordetella,(Bordetella,Bordetella)99)100)100);
((Clostridium,Clostridium)99,(Mycobacterium,Desulfotalea));
((Acinetobacter,Coxiella)65,(Silicibacter,Mesorhizobium));
(Pyrococcus,(Deinococcus,((((Leifsonia,(Streptomyces,Streptomyces)100)85,Propionibacterium)62,Bifidobacterium)96,((Corynebacterium,(Corynebacterium,Corynebacterium)100)100,(Nocardia,(Mycobacterium,Mycobacterium)100)85)100)100)100);
(Agrobacterium,(Legionella,(Escherichia,(Yersinia,Salmonella)97)78)78);
(((Nanoarchaeum,((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)55)84)100,(Methanopyrus,Methanosarcina)93)100)38,(Sulforobus,Sulforobus)99)37,(Pyrobaculum,((((((((((((Gloeobacter,((Thermosynechococcus,Nostos)36,(Prochlorococcus,Synechosystis)28)100)100,(Symbiobacterium,(Clostridium,(Clostridium,Clostridium)58)100)31)34,((Bifidobacterium,(((Leifsonia,Tropheryma)99,((Corynebacterium,(Corynebacterium,Corynebacterium)100)100,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)99)82)26,(Propionibacterium,(Streptomyces,Streptomyces)100)51)63)100,Dehalococcoides)27)25,(Phytoplasma,(Lactococcus,(Streptococcus,(Streptococcus,(Streptococcus,(Streptococcus,Streptococcus)56)26)52)39)100)66)36,((Aquifex,Thermotoga)33,Thermus)13)16,(Parachlamydia,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)100)98)100)100)1,((Borrelia,Borrelia)100,(Treponema,Treponema)100)100)2,(Bdellovibrio,((((Francizella,Legionella)51,(((Coxiella,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)100)100)100)45,((Neisseria,Chromobacterium)100,(Azoarcus,(Nitrosomonas,((Bordetella,(Bordetella,Bordetella)80)100,(Ralstonia,(Burcholderia,Burcholderia)100)86)85)59)55)100)20,((Pseudomonas,Pseudomonas)100,(Idiomarina,(Shewanella,((Vibrio,(Vibrio,(Vibrio,Vibrio)31)64)100,((((Buchnera,Buchnera)89,(Wigglesworthia,Blochmannia)64)95,(Photorhabdus,(((Yersinia,Yersinia)100,Erwinia)60,(Shigella,(Salmonella,Escherichia)47)100)44)72)92,(Mannheimia,(Pasteurella,Haemophilus)50)100)65)89)51)100)26)39)61,((Gluconobacter,(Bradyrhizobium,(((Brucella,Brucella)67,Brucella)100,((Mesorhizobium,(Sinorhizobium,Agrobacterium)97)62,(Bartonella,Bartonella)100)28)100)100)97,((Wolbachia,Wolbachia)100,(Rickettsia,Rickettsia)100)78)59)97,(Desulfovibrio,Geobacter)86)53)74)17,(Porphyromonas,Chlorobium)90)29,Leptospira)51,((Wolinella,(Helicobacter,Helicobacter)76)53,Campylobacter)100)69,(Bacillus,Bacillus)100)100)100);
(Fusobacterium,(((((Clostridium,(Clostridium,Clostridium)78)82,(Symbiobacterium,((Bacillus,Bacillus)100,(Bacillus,Bacillus)100)78)40)17,Thermoanaerobacter)100,(Listeria,Listeria)100)99,(Lactobacillus,Thermotoga)50)50);
(Oceanobacillus,(Agrobacterium,(Salmonella,((Chromobacterium,Caulobacter)60,(Burcholderia,Burcholderia)100)81)69)69);
(Haroarcula,(Idiomarina,(Mycobacterium,Mycobacterium)100)100);
(Porphyromonas,(((Mycobacterium,Mycobacterium)90,Nocardia)80,Propionibacterium));
(Pseudomonas,((Brucella,(Brucella,Brucella)91)100,(Mesorhizobium,(Caulobacter,Rhodopseudomonas)65)40)40);
((Bordetella,Bordetella)100,(Pseudomonas,(Xylella,(Yersinia,Yersinia)100)56)56);
(Bifidobacterium,(((Pseudomonas,(Pseudomonas,Pseudomonas)97)94,(Campylobacter,(Vibrio,Vibrio)100)64)100,(Chromobacterium,(Sinorhizobium,(Brucella,(Brucella,Brucella)76)100)86)100)100);
(Thermoanaerobacter,(((((Mycobacterium,Mycobacterium)100,Mycobacterium)100,Nocardia)96,(Corynebacterium,(Corynebacterium,Corynebacterium)99)100)100,Bacillus));
(Aquifex,(Desulfotalea,((Fusobacterium,Thermotoga)60,(Bdellovibrio,Geobacter)51)50)50);
((Chromobacterium,(Pseudomonas,Nitrosomonas)52)45,(Shewanella,(Vibrio,(Vibrio,Vibrio)94)100)100);
((((Nocardia,Mycobacterium)78,(Corynebacterium,(Corynebacterium,Corynebacterium)96)99)85,Bdellovibrio)100,(Porphyromonas,(Bacteroides,Bacteroides)90)90);
((Nostos,Synechosystis)100,((Idiomarina,(Acinetobacter,Vibrio)94)48,(Rhodopseudomonas,(Bordetella,Bordetella)100)54)54);
(Bacillus,(Leptospira,(Nocardia,(Pirellula,Pirellula)100)73)73);
(Geobacter,((((Chlamydophila,(Chlamydophila,Chlamydophila)100)70,Chlamydophila)100,Parachlamydia)99,Treponema));
((Bacteroides,Bacteroides)47,(Vibrio,((Azoarcus,Escherichia)78,(Erwinia,Salmonella)100)86)86);
(Leptospira,((Chromobacterium,Ralstonia)69,(((Azoarcus,(Xanthomonas,(Xanthomonas,Xanthomonas)41)100)47,(Nitrosomonas,((Burcholderia,Burcholderia)100,(Bradyrhizobium,Rhodopseudomonas)75)53)92)26,(Acinetobacter,(Mannheimia,Pasteurella)100)46)17)17);
((Haroarcula,Thermococcus)79,(Legionella,(Deinococcus,((Synechococcus,(Thermosynechococcus,Synechosystis)52)100,(Silicibacter,(Leptospira,((Bacillus,Geobacillus)100,(Staphylococcus,Staphylococcus)100)89)31)61)53)100)100);
(Sinorhizobium,((Mesorhizobium,Pseudomonas)99,(Bordetella,Bordetella)100)100);
(Thermoanaerobacter,(Oceanobacillus,(Geobacillus,(Bacillus,Bacillus)98)58)58);
((Pseudomonas,Acinetobacter)100,(Burcholderia,Burcholderia));
(Thermoanaerobacter,(Oceanobacillus,(Geobacillus,(Bacillus,(Bacillus,Bacillus)98)70)76)76);
(Desulfotalea,(((((((((((Erwinia,(Yersinia,Yersinia)100)82,(Salmonella,(Escherichia,Shigella)96)95)29,Photorhabdus)94,(Mannheimia,(Haemophilus,Pasteurella)80)100)28,(Vibrio,(Vibrio,(Vibrio,Vibrio)96)76)99)42,Idiomarina)32,Shewanella)79,(Pseudomonas,(Pseudomonas,Pseudomonas)61)100)41,Methylococcus)100,Sinorhizobium)53,(Helicobacter,(Helicobacter,(Campylobacter,Wolinella)41)40)98)98);
(Bacteroides,(((Streptomyces,Streptomyces)100,Nocardia)100,(Silicibacter,(Pirellula,Pirellula)100)100)100);
(((Erwinia,Vibrio)100,Vibrio)100,(Mycobacterium,Mycobacterium));
((((Acinetobacter,(Wigglesworthia,Blochmannia)100)89,Erwinia)100,(Pseudomonas,Pseudomonas)100)84,(Ralstonia,(Burcholderia,Burcholderia)100)100);
(Haroarcula,((Gluconobacter,Gloeobacter)56,((Thermosynechococcus,Nostos)75,(Prochlorococcus,Synechococcus)100)45)45);
((Desulfotalea,Geobacter)87,(Methylococcus,(((Pasteurella,((Erwinia,(Yersinia,Yersinia)100)88,(Salmonella,(Escherichia,Shigella)100)100)100)100,Shewanella)98,(Pseudomonas,(Pseudomonas,Pseudomonas)99)100)60)60);
(Thermococcus,((Listeria,Listeria)100,Oceanobacillus));
(Propionibacterium,((Desulfovibrio,Deinococcus)99,(Bordetella,Bordetella)100)100);
(Geobacter,((Burcholderia,Burcholderia)100,(Bordetella,Bordetella)100)100);
((((Burcholderia,Burcholderia)100,Nitrosomonas)56,Ralstonia)97,(Methylococcus,(Pseudomonas,Pseudomonas)99)99);
(Aquifex,((Wolinella,Campylobacter)63,(((Gloeobacter,Thermosynechococcus)33,(((Synechococcus,Prochlorococcus)85,Synechosystis)22,Nostos)16)97,((Desulfovibrio,Zymomonas)89,((Methylococcus,Nitrosomonas)71,(Chlorobium,(Thermoanaerobacter,Leptospira)55)100)50)100)95)95);
(((Clostridium,Clostridium)100,Clostridium)36,(Bacillus,((Bacillus,Geobacillus)67,((((((((Mannheimia,Haemophilus)100,((Erwinia,(Yersinia,Yersinia)100)75,(Salmonella,(Escherichia,Shigella)100)100)87)94,Ralstonia)44,Idiomarina)32,Sinorhizobium)45,Neisseria)99,((Bacteroides,Geobacter)80,Shewanella)63)69,(Staphylococcus,Staphylococcus)100)90)55)55);
(Thermotoga,(Treponema,((Symbiobacterium,(Agrobacterium,Rhodopseudomonas)56)57,(Wolinella,(Azoarcus,Nitrosomonas)100)100)90)90);
(((Xanthomonas,Xanthomonas)100,Escherichia)100,(Mycobacterium,Mycobacterium));
(Methanosarcina,((Geobacter,Leptospira)82,Aquifex));
(((((Salmonella,(Escherichia,Shigella)99)100,Erwinia)65,(Yersinia,Yersinia)100)58,Photorhabdus)100,(Burcholderia,Chromobacterium));
(Pyrobaculum,((Archhaeoglobus,Aeropyrum)93,(((Sulforobus,Sulforobus)65,Picrophilus)100,(Methanosarcina,Methanosarcina)100)49)49);
(Clostridium,(Bartonella,(Agrobacterium,Bartonella)65)65);
(Symbiobacterium,((Streptomyces,Streptomyces)100,Nocardia));
((Leptospira,(Caulobacter,Dehalococcoides)73)48,(Lactobacillus,((Lactococcus,Enterococcus)34,(Listeria,Listeria)100)24)24);
(Pyrobaculum,((((((((Halobacterium,Haroarcula)100,(Methanosarcina,Methanosarcina)100)42,Archhaeoglobus)80,(Methanobacterium,Methanopyrus)54)56,(Methanobacterium,Methanobacterium)100)85,((Picrophilus,(Thermoplasma,Thermoplasma)100)100,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)90)79)100)95)95,Nanoarchaeum)100,(Aeropyrum,(Sulforobus,Sulforobus)100)54)54);
((((Chlamydophila,Chlamydophila)98,Chlamydophila)79,Deinococcus)93,(Streptococcus,((Staphylococcus,Staphylococcus)100,(Lactobacillus,Lactobacillus)100)94)94);
(((((Erwinia,(Salmonella,(Shigella,Escherichia)100)99)45,Photorhabdus)80,(Yersinia,Yersinia)100)100,(Pseudomonas,(Pseudomonas,Pseudomonas)69)100)100,(Streptomyces,Streptomyces));
(Halobacterium,((((((Bacillus,Bacillus)74,Bacillus)65,Geobacillus)98,Thermus)77,((Nocardia,(Streptomyces,Streptomyces)100)84,(Mycobacterium,Mycobacterium)100)100)85,(Bradyrhizobium,Rhodopseudomonas)100)100);
(Pyrobaculum,(Methanopyrus,(Methanosarcina,Methanosarcina)60)60);
(((Bordetella,Bordetella)75,Bordetella)100,(Pseudomonas,(Pseudomonas,(Xanthomonas,Xanthomonas)100)97)97);
((((Pseudomonas,Pseudomonas)54,Pseudomonas)100,Methylococcus)91,(Azoarcus,(((Bordetella,Bordetella)80,Bordetella)100,(Burcholderia,Burcholderia)100)93)93);
(Rhodopseudomonas,(((Bordetella,Bordetella)90,Bordetella)100,Pseudomonas));
(Clostridium,(Enterococcus,(Bacillus,Bacillus)100)100);
(Streptomyces,((((Bordetella,Bordetella)98,Bordetella)100,Salmonella)60,Silicibacter));
(((Brucella,(Brucella,Brucella)68)100,Mesorhizobium)100,(Pasteurella,(Escherichia,(Yersinia,Yersinia)100)100)100);
((Porphyromonas,Chlorobium)33,((Pasteurella,(Neisseria,Haemophilus)96)94,((Bacteroides,Desulfotalea)65,(Campylobacter,Helicobacter)100)46)46);
(Bradyrhizobium,(((((Bordetella,Bordetella)97,Bordetella)100,Ralstonia)100,Burcholderia)79,Pseudomonas));
(((((Bacillus,Bacillus)100,(Geobacillus,(Bacillus,Bacillus)96)28)33,Bacillus)66,Oceanobacillus)100,(Symbiobacterium,(Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)76)100)97)97);
(Pyrobaculum,((Sulforobus,Sulforobus)97,(Aeropyrum,((Methanobacterium,(Methanobacterium,Methanobacterium)100)60,(((Pyrococcus,Thermococcus)72,(Pyrococcus,Pyrococcus)58)99,(Methanopyrus,(Archhaeoglobus,((Methanosarcina,Methanosarcina)100,(Haroarcula,Halobacterium)100)61)21)25)34)37)43)43);
(Aeropyrum,(Clostridium,((Enterococcus,(Streptococcus,Streptococcus)98)81,((Corynebacterium,Methanosarcina)97,(Rhodopseudomonas,Bradyrhizobium)100)77)50)50);
(((((Bordetella,(Bordetella,Bordetella)89)100,(Ralstonia,(Burcholderia,Burcholderia)100)90)57,Azoarcus)79,Nitrosomonas)91,((Vibrio,Idiomarina)95,(Xanthomonas,(Pseudomonas,Pseudomonas)100)41)41);
(((Listeria,Listeria)100,Enterococcus)99,(Methylococcus,(Yersinia,Yersinia)100)100);
(Leptospira,(((Streptomyces,Streptomyces)98,((Corynebacterium,Corynebacterium)89,(Nocardia,(Mycobacterium,Mycobacterium)100)74)60)93,Vibrio));
(Clostridium,(Mesorhizobium,(Salmonella,(Listeria,Listeria)100)87)87);
(Desulfovibrio,((Bordetella,Burcholderia)50,(Bordetella,Bordetella)100)100);
((Methanobacterium,(Halobacterium,Haroarcula)100)100,(Deinococcus,(Leifsonia,(Corynebacterium,Corynebacterium)100)100)100);
(Clostridium,(Streptococcus,(Photorhabdus,(Bacteroides,(Mesorhizobium,Shewanella)47)46)55)55);
(Bradyrhizobium,((((Xanthomonas,Xanthomonas)55,Xanthomonas)100,Pseudomonas)98,Burcholderia));
(Mesorhizobium,(Leifsonia,(Streptomyces,Streptomyces)98)98);
(((((Synechosystis,Nostos)74,(Prochlorococcus,Synechococcus)100)65,Thermosynechococcus)58,Gloeobacter)100,(Rhodopseudomonas,Chlorobium));
(((Lactobacillus,Lactobacillus)75,Lactobacillus)100,(Bifidobacterium,(Corynebacterium,Propionibacterium)100)100);
((Caulobacter,Bdellovibrio)100,((Bacillus,Bacillus)46,(Bacillus,((Listeria,Listeria)100,(Staphylococcus,Staphylococcus)100)58)21)21);
((Pirellula,Pirellula)100,(Agrobacterium,(Zymomonas,Gluconobacter)100)100);
(Desulfovibrio,(Sulforobus,(Picrophilus,(Thermoplasma,Thermoplasma)100)96)96);
(Fusobacterium,(Thermoanaerobacter,(Symbiobacterium,Porphyromonas)68)68);
((((((Chlamydophila,Chlamydophila)62,Chlamydophila)72,Chlamydophila)100,Parachlamydia)81,Pyrobaculum)99,(Lactobacillus,Lactobacillus));
((((Mycobacterium,Mycobacterium)100,Nocardia)94,Streptomyces)100,(Synechosystis,Nostos));
(Desulfovibrio,(((Bordetella,Chromobacterium)42,Neisseria)51,Haemophilus));
(Azoarcus,((Streptococcus,Streptococcus)100,Bacillus));
(Thermotoga,(Ralstonia,(Pseudomonas,(Escherichia,Shigella)100)66)66);
((Thermococcus,Pyrococcus)100,((((Thermotoga,Methanosarcina)50,(Methanobacterium,Methanobacterium)53)84,Gloeobacter)52,(Sulforobus,((Pyrobaculum,Aeropyrum)100,((Chlorobium,Thermoanaerobacter)99,(Bacteroides,Bacteroides)100)99)100)59)59);
(Clostridium,(((Mycoplasma,Mycoplasma)60,Mycoplasma)99,Streptomyces));
(((((Nocardia,(Mycobacterium,Mycobacterium)100)89,(Streptomyces,Streptomyces)100)93,(Ralstonia,(Burcholderia,Azoarcus)75)100)76,Thermotoga)100,(Pyrococcus,Aeropyrum));
(((Nostos,Thermosynechococcus)63,Prochlorococcus)100,(Parachlamydia,Bdellovibrio));
(Pyrobaculum,(Halobacterium,(Sulforobus,Sulforobus)100)100);
((Ralstonia,Desulfovibrio)100,(Pirellula,Pirellula));
(Nitrosomonas,((Sinorhizobium,Agrobacterium)71,(Rhodopseudomonas,Mesorhizobium)80)80);
(Ralstonia,(Gluconobacter,(((Caulobacter,(Bradyrhizobium,Rhodopseudomonas)100)68,Silicibacter)60,(((((Brucella,Brucella)87,Brucella)100,Mesorhizobium)82,(Sinorhizobium,Agrobacterium)63)95,(Bartonella,Bartonella)100)82)59)59);
(Thermus,((Caulobacter,Rickettsia)71,Gluconobacter));
(((Corynebacterium,Corynebacterium)64,Streptomyces)100,(Oceanobacillus,(Bacillus,Bacillus)100)100);
(Fusobacterium,((Staphylococcus,(Oceanobacillus,(Bacillus,Bacillus)100)97)100,(Leptospira,(Francizella,(Idiomarina,(Pirellula,Pirellula)100)75)98)64)64);
(Lactobacillus,(Mannheimia,(Lactococcus,(Sinorhizobium,Xylella)96)42)42);
((Pseudomonas,Pseudomonas)88,(Pirellula,Pirellula));
((Azoarcus,Shewanella)78,(((Mesorhizobium,Caulobacter)63,Zymomonas)41,(Bartonella,Bartonella)100)100);
(((Clostridium,Clostridium)100,Clostridium)100,(Bacillus,Bacillus));
(Gloeobacter,((Pseudomonas,Silicibacter)68,Leptospira));
(((Xanthomonas,(Xanthomonas,Xanthomonas)84)100,Shewanella)100,(Mesorhizobium,(Rhodopseudomonas,Bradyrhizobium)57)57);
(Photorhabdus,(Rickettsia,(Rickettsia,Rickettsia)100)100);
((((((Bradyrhizobium,Rhodopseudomonas)100,Mesorhizobium)24,(Agrobacterium,Sinorhizobium)85)55,Silicibacter)80,Caulobacter)100,(Mycobacterium,Mycobacterium));
(Pseudomonas,((Desulfotalea,Desulfovibrio)56,Geobacter));
((Bordetella,Bordetella)100,(Erwinia,Pseudomonas));
(Methanosarcina,((Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)99)32)97,Parachlamydia));
(Bacillus,((((Brucella,Brucella)70,Brucella)100,Bacteroides)100,Gluconobacter));
(Nostos,(Xanthomonas,(Xanthomonas,Xanthomonas)82)82);
(Aquifex,(((((Bifidobacterium,((Corynebacterium,(Corynebacterium,Corynebacterium)78)100,(Streptomyces,Streptomyces)100)23)36,Tropheryma)99,Nostos)76,(Bdellovibrio,(Desulfotalea,Desulfovibrio)75)30)53,(Wolbachia,Wolbachia)100)100);
(Chlorobium,(Methylococcus,(Idiomarina,(Shewanella,(Vibrio,(Vibrio,Vibrio)82)98)55)70)70);
(Clostridium,((Clostridium,Bacillus)55,(Listeria,Listeria)100)100);
((((((Yersinia,Yersinia)100,Pseudomonas)46,Pseudomonas)99,((Escherichia,Shigella)100,(Xanthomonas,(Xanthomonas,Xanthomonas)100)100)83)50,(Sinorhizobium,(Brucella,(Brucella,Brucella)70)100)95)100,(Corynebacterium,(Mycobacterium,Mycobacterium)100)100);
(Sulforobus,(((Zymomonas,Salmonella)64,(Streptococcus,Streptococcus)99)100,Leptospira));
(Desulfotalea,(Haroarcula,(Thermoplasma,(Sulforobus,(Aeropyrum,(Methanobacterium,(Nanoarchaeum,(Pyrococcus,(Pyrococcus,Pyrococcus)99)100)55)41)23)45)63)63);
(((Burcholderia,Burcholderia)100,Ralstonia)100,(Pseudomonas,Xanthomonas));
(Aquifex,(Thermus,(Thermotoga,((Treponema,(Borrelia,Borrelia)100)57,(Leptospira,((((((((Methylococcus,(Legionella,Coxiella)45)23,(((((Vibrio,(Vibrio,Vibrio)39)94,Shewanella)39,(((Yersinia,Yersinia)100,((((Buchnera,Buchnera)100,Wigglesworthia)51,Photorhabdus)22,(Erwinia,(Salmonella,(Escherichia,Shigella)75)91)28)20)56,(Pasteurella,Haemophilus)99)9)13,Idiomarina)10,(Pseudomonas,(Pseudomonas,Pseudomonas)62)99)12)26,(((Ralstonia,(Burcholderia,Burcholderia)100)68,((Azoarcus,Chromobacterium)40,((Bordetella,Bordetella)78,Bordetella)100)58)36,Nitrosomonas)94)34,(Francizella,(Vibrio,Mannheimia)71)70)51,((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)62)95)100,((((Anaplasma,Ehrlichia)99,(Wolbachia,Wolbachia)100)88,(((Caulobacter,Silicibacter)66,(((Mesorhizobium,(Bartonella,Bartonella)100)55,(Brucella,(Brucella,Brucella)64)100)27,(Sinorhizobium,Agrobacterium)94)37)41,(Rhodopseudomonas,Bradyrhizobium)100)65)35,Zymomonas)60)18)16,((Campylobacter,(Wolinella,(Helicobacter,Helicobacter)97)97)100,(Rickettsia,(Rickettsia,Rickettsia)89)100)9),Chlorobium)3,(Desulfotalea,(Desulfovibrio,(Thermoanaerobacter,((((Oceanobacillus,(Listeria,Listeria)100)35,((Geobacillus,(Bacillus,Bacillus)100)56,(Bacillus,(Bacillus,Bacillus)36)47)44)33,(Staphylococcus,Staphylococcus)100)66,(Enterococcus,(Lactobacillus,(Lactobacillus,Lactobacillus)100)78)88)80)40)4)5)1)15)44)47)47);
(Clostridium,((((Listeria,Listeria)100,(Oceanobacillus,Streptococcus)13)20,Staphylococcus)48,(Bacillus,(Bacillus,Bacillus)100)100)100);
(((((Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)46,(Corynebacterium,(Corynebacterium,Corynebacterium)99)100)100,(Streptomyces,Streptomyces)96)64,Propionibacterium)100,(Archhaeoglobus,(Thermoplasma,(Methanosarcina,Methanosarcina)100)100)100);
(Bacillus,(Agrobacterium,(Pseudomonas,((Leifsonia,Nocardia)76,(Mycobacterium,Mycobacterium)100)100)64)64);
((Corynebacterium,Nocardia)73,(Sinorhizobium,Bradyrhizobium));
(Parachlamydia,(Mesorhizobium,((Xanthomonas,(Xanthomonas,Xanthomonas)96)100,(((Bordetella,Bordetella)100,(Pseudomonas,Pseudomonas)65)71,((Nocardia,(Bradyrhizobium,(Sinorhizobium,Agrobacterium)100)62)34,(Gluconobacter,(Deinococcus,Azoarcus)100)17)35)8)18)18);
(Azoarcus,((Pseudomonas,Acinetobacter)46,(Xanthomonas,(Idiomarina,(Vibrio,(Vibrio,Vibrio)49)100)85)76)76);
(Gloeobacter,((Azoarcus,(Burcholderia,(Pseudomonas,Pseudomonas)100)88)66,(Pirellula,Pirellula)100)100);
(Bradyrhizobium,((Methylococcus,Coxiella)100,Azoarcus));
((((Pseudomonas,(Escherichia,(Yersinia,Yersinia)100)100)66,Acinetobacter)100,(Deinococcus,Azoarcus)87)100,(Streptomyces,Streptomyces));
((((Pseudomonas,(Pseudomonas,Pseudomonas)42)100,(Pasteurella,Mannheimia)100)44,Acinetobacter)62,((Methylococcus,Azoarcus)62,(Chromobacterium,((Burcholderia,Burcholderia)100,(Ralstonia,(Bordetella,Bordetella)100)70)100)65)65);
(Methanopyrus,((((Salmonella,Photorhabdus)98,Pseudomonas)80,(Burcholderia,Burcholderia)100)100,Streptomyces));
(Thermus,(((Synechosystis,Thermosynechococcus)69,Gloeobacter)93,(Prochlorococcus,Synechococcus)99)99);
((Corynebacterium,Corynebacterium)100,(Silicibacter,(Nitrosomonas,(Bordetella,Bordetella)100)63)63);
((Brucella,(Brucella,Brucella)74)100,(Vibrio,(Bordetella,(Bordetella,Bordetella)100)99)99);
(Thermotoga,(Streptococcus,((Bacillus,(Bacillus,Bacillus)98)56,(Bacillus,Bacillus)100)100)100);
(Thermosynechococcus,((Bordetella,Bordetella)66,Bordetella));
(Acinetobacter,((Bordetella,(Bordetella,Bordetella)93)100,Azoarcus));
(Rhodopseudomonas,(Xanthomonas,(Xanthomonas,Xanthomonas)97)97);
(Deinococcus,(Pseudomonas,((Agrobacterium,Methylococcus)31,(Silicibacter,(Xanthomonas,(Xanthomonas,Xanthomonas)99)100)86)30)30);
(Desulfotalea,((Escherichia,Yersinia)97,Vibrio));
((Desulfotalea,Vibrio)100,(Pirellula,Pirellula));
(((Brucella,Brucella)94,Brucella)100,(Vibrio,Vibrio));
(Fusobacterium,((((((((Xanthomonas,(Xanthomonas,Xanthomonas)90)100,(Yersinia,Yersinia)100)28,Pseudomonas)23,(Pseudomonas,Pseudomonas)51)84,(Erwinia,((Shigella,Escherichia)78,Salmonella)100)98)97,Shewanella)85,(Desulfotalea,(Vibrio,Vibrio)52)79)85,(Bacillus,Bacillus)100)100);
(Pyrobaculum,((((Mesorhizobium,(Bartonella,Bartonella)100)77,Bradyrhizobium)35,Xanthomonas)100,Desulfovibrio));
(Xanthomonas,((Mycobacterium,Mycobacterium)100,Nocardia));
(Pyrobaculum,((((Pyrococcus,Pyrococcus)84,Pyrococcus)100,Thermococcus)100,Aeropyrum));
(Pyrobaculum,(Aeropyrum,(Sulforobus,Sulforobus)100)100);
(Streptococcus,(Acinetobacter,(Shewanella,Escherichia)75)75);
((Streptomyces,Streptomyces)100,(Bacteroides,Bacteroides));
(Bacillus,((((Vibrio,Vibrio)52,Vibrio)65,Vibrio)100,Erwinia));
(Nostos,(Gluconobacter,(((Streptomyces,Streptomyces)100,((Chromobacterium,(Pseudomonas,Pseudomonas)92)100,(Pirellula,Pirellula)100)79)47,(Yersinia,Yersinia)100)63)63);
(Treponema,((Gluconobacter,Vibrio)100,Bdellovibrio));
(Bacillus,((Lactobacillus,Mycoplasma)100,Bacillus));
(Nostos,(Photorhabdus,(Methylococcus,Silicibacter)100)100);
(Ralstonia,(((Vibrio,Vibrio)86,Vibrio)100,(Shewanella,(Pseudomonas,Pseudomonas)100)99)99);
((Xylella,Azoarcus)59,(Sinorhizobium,(Silicibacter,Mesorhizobium)40)40);
(Rickettsia,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)100)68)68);
(Leptospira,(Methylococcus,((Caulobacter,(Shewanella,Idiomarina)95)87,(Ralstonia,(Zymomonas,(Bradyrhizobium,Rhodopseudomonas)95)70)52)54)54);
((Clostridium,(Clostridium,Clostridium)54)67,((((((((((((((((((Vibrio,Vibrio)16,Vibrio)26,Vibrio)77,(Pasteurella,(Haemophilus,Mannheimia)77)92)26,(((Photorhabdus,(Erwinia,(Yersinia,Yersinia)83)70)71,((Escherichia,(Shigella,Salmonella)54)100,Shewanella)20)16,(((Blochmannia,Wigglesworthia)69,Buchnera)49,Buchnera)45)13)14,Idiomarina)28,(Pseudomonas,(Acinetobacter,(Pseudomonas,Pseudomonas)83)29)33)8,(Francizella,Legionella)16)15,(Methylococcus,((Xanthomonas,Xanthomonas)77,(Xanthomonas,Xylella)47)100)34)16,(Nitrosomonas,((Neisseria,Chromobacterium)69,((Ralstonia,(Azoarcus,((Bordetella,Bordetella)44,Bordetella)100)43)33,(Burcholderia,Burcholderia)100)39)13)13)30,((((Rhodopseudomonas,Bradyrhizobium)94,(((Brucella,(Brucella,Brucella)35)74,((Bartonella,Bartonella)86,Mesorhizobium)47)55,(Sinorhizobium,Agrobacterium)89)86)65,(Gluconobacter,Caulobacter)51)55,Silicibacter)76)11,(Desulfotalea,(((Campylobacter,(Wolinella,(Helicobacter,Helicobacter)63)71)94,(Porphyromonas,(Bacteroides,Bacteroides)100)97)20,((Bdellovibrio,((Nostos,(Thermosynechococcus,(Synechococcus,Prochlorococcus)96)19)45,Synechosystis)77)14,(Deinococcus,Thermus)80)))),(((Parachlamydia,((Chlamydophila,Chlamydophila)97,(Chlamydophila,Chlamydophila)57)94)99,(Bifidobacterium,(Propionibacterium,((Corynebacterium,(Corynebacterium,Corynebacterium)74)87,(Mycobacterium,(Mycobacterium,Mycobacterium)94)97)75)99)78)1,Chlorobium)3),((Anaplasma,Ehrlichia)95,(Wolbachia,Wolbachia)88)99)3,(Treponema,(Borrelia,Borrelia)100)58)4,((((((Staphylococcus,Staphylococcus)97,Oceanobacillus)41,(Bacillus,((Lactobacillus,(Lactobacillus,Lactobacillus)70)45,((((Streptococcus,(Lactococcus,Streptococcus)65)10,Streptococcus)29,(Enterococcus,Streptococcus)34)8,Streptococcus)44)34)22)25,((((Bacillus,Bacillus)100,Geobacillus)28,(Bacillus,Bacillus)87)31,(Listeria,Listeria)100)8)30,((Ureaplasma,((Mycoplasma,Mycoplasma)68,(Mycoplasma,Mycoplasma)100)78)92,(((Mycoplasma,Mycoplasma)95,Mycoplasma)55,Mycoplasma)49)26)21,Phytoplasma)19)13,Dehalococcoides)6,(Thermoanaerobacter,(Symbiobacterium,(Rickettsia,(Rickettsia,Rickettsia)14)100)24)5)5);
((((((((Bordetella,Bordetella)85,Bordetella)100,(Xanthomonas,(Xanthomonas,Xanthomonas)61)100)100,((Idiomarina,(Pseudomonas,(Vibrio,Vibrio)100)41)33,Shewanella)26)42,Acinetobacter)97,((Bradyrhizobium,Rhodopseudomonas)100,Propionibacterium)51)55,Mesorhizobium)100,(Corynebacterium,(Corynebacterium,Corynebacterium)97)97);
(Clostridium,(Vibrio,(Clostridium,(Bacteroides,Bacteroides)100)70)70);
(((Pseudomonas,Pseudomonas)43,Pseudomonas)100,(Rhodopseudomonas,Bradyrhizobium));
(Leptospira,(Bdellovibrio,(Thermus,(Pirellula,Pirellula)100)100)100);
((Mycobacterium,Mycobacterium)100,(Pyrococcus,Thermococcus));
(Bartonella,(Lactococcus,(Lactobacillus,Enterococcus)49)49);
(Wolinella,(((((Vibrio,Vibrio)82,Vibrio)80,Vibrio)100,(Idiomarina,Shewanella)75)89,Chromobacterium));
((((Xanthomonas,Xanthomonas)100,Xylella)92,Xanthomonas)100,(Oceanobacillus,(Listeria,Listeria)95)95);
(Azoarcus,(((((Vibrio,Vibrio)95,Vibrio)60,Vibrio)97,Shewanella)82,(Pseudomonas,(Pseudomonas,Pseudomonas)50)100)100);
(((Bacillus,(Mycoplasma,(Photorhabdus,Mannheimia)83)50)94,((Chromobacterium,Acinetobacter)100,Legionella)44)100,(Staphylococcus,Staphylococcus));
(((Thermoplasma,Thermoplasma)100,(Picrophilus,Sulforobus)99)99,(((((Helicobacter,(Idiomarina,(Pseudomonas,Pseudomonas)100)99)11,(Coxiella,(Bacillus,(Bacillus,((Bacillus,Oceanobacillus)99,(Bacillus,Bacillus)100)67)100)90)63)16,Legionella)43,((Ralstonia,(Burcholderia,Burcholderia)100)80,((Photorhabdus,Escherichia)91,(Bordetella,(Bordetella,Bordetella)97)100)46)95)100,(Bdellovibrio,((Corynebacterium,Corynebacterium)90,(Mycobacterium,Mycobacterium)100)98)100)100);
(((Idiomarina,Caulobacter)98,Xanthomonas)100,(Streptomyces,Streptomyces));
(Bdellovibrio,(((((Vibrio,Vibrio)86,Vibrio)100,Helicobacter)75,Xanthomonas)62,(Xanthomonas,Xanthomonas)100)100);
(Thermoanaerobacter,(Streptococcus,(Bacteroides,Bacteroides)100)100);
(Fusobacterium,((Porphyromonas,Treponema)83,(Lactococcus,(Helicobacter,((Idiomarina,Propionibacterium)41,(Listeria,Listeria)99)54)30)38)38);
(Fusobacterium,(Campylobacter,((Clostridium,Clostridium)79,(Clostridium,(Leptospira,(Chlorobium,((Bacillus,Bacillus)100,(Bacillus,Bacillus)99)95)32)30)44)65)65);
(Fusobacterium,(Clostridium,(Clostridium,((Enterococcus,(Listeria,Listeria)100)69,(Clostridium,(((Burcholderia,Burcholderia)100,(((Nocardia,Streptomyces)91,(Chromobacterium,(Bradyrhizobium,Rhodopseudomonas)100)25)56,(Ralstonia,((Xanthomonas,Xanthomonas)100,(Pseudomonas,(Pseudomonas,Pseudomonas)64)100)83)98)72)100,(Symbiobacterium,(Photorhabdus,(Salmonella,Escherichia)99)100)51)57)88)59)62)62);
(((Shewanella,(Vibrio,(Vibrio,Vibrio)93)100)99,(Pseudomonas,Pseudomonas)100)83,((Chromobacterium,Azoarcus)78,(Burcholderia,Burcholderia)100)100);
((Thermotoga,Aquifex)100,(Methanopyrus,(Methanobacterium,Thermococcus)100)100);
(Agrobacterium,(Burcholderia,(Shewanella,(Ralstonia,(Xanthomonas,(Xanthomonas,Xanthomonas)100)100)100)100)100);
(((Clostridium,Clostridium)75,Clostridium)100,(Parachlamydia,((Nitrosomonas,Vibrio)100,(Nocardia,(Streptomyces,Streptomyces)100)100)96)96);
(Silicibacter,(Nocardia,((Streptomyces,Streptomyces)97,(Mycobacterium,Mycobacterium)100)64)64);
(Acinetobacter,(((Corynebacterium,Corynebacterium)100,Corynebacterium)100,(Mycobacterium,Mycobacterium)100)100);
(Bradyrhizobium,(Photorhabdus,(Yersinia,Yersinia)100)100);
(Mesorhizobium,(Geobacillus,(Staphylococcus,Staphylococcus)100)100);
(Leptospira,(Deinococcus,(Nocardia,(Acinetobacter,(Burcholderia,Burcholderia)100)61)93)93);
(Haroarcula,((((Brucella,Brucella)67,Brucella)100,Mesorhizobium)100,Nocardia));
(Lactobacillus,(Streptomyces,(Geobacillus,((Streptomyces,Legionella)89,(Bradyrhizobium,(Yersinia,Yersinia)100)98)98)92)92);
(Nitrosomonas,(Silicibacter,((((Brucella,(Brucella,Brucella)60)100,(Bartonella,Bartonella)100)42,(Mesorhizobium,(Agrobacterium,Sinorhizobium)83)75)99,(Bradyrhizobium,Rhodopseudomonas)100)54)54);
(Zymomonas,(Chromobacterium,((Pasteurella,Acinetobacter)73,(Erwinia,(Photorhabdus,(Yersinia,Yersinia)100)97)100)92)92);
(Azoarcus,(((((Xanthomonas,Xanthomonas)80,Xanthomonas)90,Xylella)100,Pseudomonas)93,Methylococcus));
(Dehalococcoides,(((Agrobacterium,Sinorhizobium)100,Bradyrhizobium)93,Silicibacter));
(Enterococcus,(((Yersinia,Shewanella)97,Vibrio)96,Escherichia));
(Leptospira,(Pseudomonas,(Methylococcus,(Azoarcus,(Bordetella,(Bordetella,Bordetella)72)100)79)45)45);
(((((Shewanella,Erwinia)60,(Escherichia,Shigella)100)78,Pseudomonas)49,Pseudomonas)82,(Ehrlichia,Zymomonas));
((Borrelia,Borrelia)100,(Mesorhizobium,Sinorhizobium));
((((Vibrio,(Vibrio,(Vibrio,Vibrio)58)90)60,((Salmonella,Escherichia)86,Shigella)100)87,Shewanella)57,(Clostridium,Clostridium));
(Desulfotalea,((((Pyrococcus,Pyrococcus)37,Pyrococcus)60,Thermococcus)100,(Sulforobus,Sulforobus)100)100);
(Azoarcus,(Xanthomonas,(Xanthomonas,Xanthomonas)85)85);
(Pyrobaculum,((((((Pyrococcus,Pyrococcus)93,Pyrococcus)95,Thermococcus)97,(Methanobacterium,Methanobacterium)100)67,(Nanoarchaeum,(Halobacterium,Archhaeoglobus)55)41)44,(Sulforobus,Sulforobus)100)100);
(Clostridium,(Photorhabdus,((Shewanella,Vibrio)76,((Ralstonia,Chromobacterium)40,((Mesorhizobium,(Streptomyces,Streptomyces)100)61,(Xanthomonas,Xanthomonas)100)13)33)94)94);
(Geobacter,((((Brucella,Brucella)98,Brucella)100,Rhodopseudomonas)100,Mannheimia));
((Aeropyrum,Sulforobus)47,((Desulfovibrio,((Nostos,Streptomyces)52,Gloeobacter)47)80,(Mycobacterium,Mycobacterium)100)100);
(Methanobacterium,(Wolinella,(((Pirellula,Pirellula)100,(Pseudomonas,((Rhodopseudomonas,(Xanthomonas,(Xanthomonas,Xanthomonas)100)100)43,(Caulobacter,(Gluconobacter,Agrobacterium)74)88)58)67)100,((Chlorobium,(Geobacter,(Clostridium,Fusobacterium)35)23)15,(Acinetobacter,(Bacteroides,Bacteroides)100)44)46)45)45);
(Leptospira,(Shewanella,(Xanthomonas,Pseudomonas)57)57);
((Listeria,Listeria)100,((((Yersinia,Yersinia)100,Erwinia)53,Photorhabdus)100,((Pseudomonas,(Ralstonia,(Burcholderia,Burcholderia)100)60)78,(Mesorhizobium,(Agrobacterium,((Propionibacterium,Corynebacterium)48,(Streptomyces,Streptomyces)100)100)31)24)25)25);
(Clostridium,((Bacillus,Xanthomonas)95,(Bordetella,Bordetella)100)100);
(Desulfovibrio,(Xanthomonas,(Gluconobacter,(Methylococcus,(Acinetobacter,Yersinia)89)97)96)96);
(Gluconobacter,(Bordetella,(Bordetella,Bordetella)46)46);
(Wolinella,((((Bordetella,Bordetella)94,Bordetella)100,Ralstonia)82,Chromobacterium));
(Aquifex,(Thermotoga,(((Deinococcus,Thermus)61,(Pirellula,Pirellula)100)26,(((((((((Bacillus,Bacillus)91,Geobacillus)30,(Listeria,Listeria)100)11,Oceanobacillus)7,((Staphylococcus,Staphylococcus)100,(Bacillus,Bacillus)100)17)3,Bacillus)26,Fusobacterium)3,((((Lactobacillus,Enterococcus)65,(Lactococcus,(Streptococcus,(Streptococcus,(Streptococcus,(Streptococcus,Streptococcus)30)27)34)93)55)21,(Lactobacillus,Lactobacillus)94)27,((Phytoplasma,Mycoplasma)49,(((Mycoplasma,(Ureaplasma,(Mycoplasma,(Mycoplasma,Mycoplasma)100)97)78)94,(Mycoplasma,(Mycoplasma,Mycoplasma)51)93)74,(Tropheryma,(Bifidobacterium,(((Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)90,((Leifsonia,(Streptomyces,Streptomyces)100)63,(Corynebacterium,(Corynebacterium,Corynebacterium)94)92)9)38,Propionibacterium)70)73)70)27)11))8,((((Clostridium,(Clostridium,Clostridium)39)95,Thermoanaerobacter)45,Symbiobacterium)51,(((Prochlorococcus,Synechococcus)100,(Gloeobacter,(Nostos,(Synechosystis,Thermosynechococcus)26)38)83)91,((Porphyromonas,(Bacteroides,Bacteroides)98)100,(((Geobacter,((((Chromobacterium,Neisseria)54,((Azoarcus,(Ralstonia,(Burcholderia,Burcholderia)100)93)39,((Bordetella,Bordetella)47,Bordetella)100)45)56,(((Xylella,(Xanthomonas,Xanthomonas)100)100,(Acinetobacter,(Pseudomonas,(Pseudomonas,Pseudomonas)67)84)20)20,(Legionella,((Francizella,Blochmannia)40,(Wigglesworthia,((Buchnera,Buchnera)42,(Shewanella,(((Vibrio,Vibrio)51,(Vibrio,Vibrio)63)99,(Idiomarina,(((Haemophilus,Mannheimia)62,Pasteurella)95,(Photorhabdus,((Erwinia,(Yersinia,Yersinia)90)55,(Escherichia,(Shigella,Salmonella)46)99)63)69)81)8)13)16)35)29)25)17)4)15,((Methylococcus,Coxiella)41,Nitrosomonas)16)35)4,Desulfotalea)4,((((Rickettsia,(Rickettsia,Rickettsia)95)100,((Zymomonas,(Silicibacter,((Caulobacter,(Bradyrhizobium,Rhodopseudomonas)100)50,(((Agrobacterium,Sinorhizobium)95,Mesorhizobium)29,((Bartonella,Bartonella)99,(Brucella,(Brucella,Brucella)82)100)45)99)42)47)45,Gluconobacter)89)30,((Chlorobium,(Campylobacter,(Wolinella,(Helicobacter,Helicobacter)50)81)100)61,((Ehrlichia,Anaplasma)96,(Wolbachia,Wolbachia)100)69)7)8,((Desulfovibrio,(Dehalococcoides,(Parachlamydia,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)95)73)100)75)28)26,(Bdellovibrio,(Leptospira,((Treponema,Treponema)95,(Borrelia,Borrelia)100)74)40)16)8)4)2)1)6)1)4)23)23);
(Pseudomonas,((Caulobacter,Zymomonas)54,Rickettsia));
(Desulfovibrio,(Azoarcus,(((Bordetella,Bordetella)71,Bordetella)100,(Ralstonia,(Burcholderia,Burcholderia)100)91)93)93);
((Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)96)99)96,((Gloeobacter,(Synechosystis,Nostos)100)100,((Lactobacillus,(Enterococcus,(Streptococcus,(Streptococcus,Streptococcus)73)100)66)96,((((((Bacillus,Bacillus)100,Geobacillus)22,(Bacillus,Oceanobacillus)37)19,(Bacillus,Bacillus)98)43,(Listeria,Listeria)94)50,(Staphylococcus,Staphylococcus)100)35)68)68);
((Sinorhizobium,Caulobacter)62,((Xanthomonas,Xanthomonas)100,(Yersinia,Yersinia)100)100);
((Symbiobacterium,Thermoanaerobacter)84,(Deinococcus,Thermus));
(Bacillus,(((Bacteroides,Desulfotalea)56,Geobacter)47,(Bdellovibrio,Methylococcus)100)100);
(Methanobacterium,(Oceanobacillus,(Bacillus,Bacillus)51)51);
(Sulforobus,(Aquifex,(Symbiobacterium,((Synechococcus,((Nostos,Synechosystis)87,Prochlorococcus)48)96,(((((Pseudomonas,Escherichia)30,(Photorhabdus,(Burcholderia,Burcholderia)100)63)21,Chromobacterium)60,Pseudomonas)100,(Ralstonia,(Rhodopseudomonas,Bradyrhizobium)100)62)97)100)95)95);
(Streptococcus,((((Xanthomonas,Xanthomonas)100,Xanthomonas)100,Caulobacter)97,(Mesorhizobium,Agrobacterium)100)100);
(Porphyromonas,((((Salmonella,(Shigella,Escherichia)100)100,(Legionella,Parachlamydia)29)21,Acinetobacter)53,(Shewanella,Vibrio)100)100);
(Halobacterium,(((Caulobacter,Silicibacter)40,((Bradyrhizobium,Rhodopseudomonas)100,(Mesorhizobium,(Sinorhizobium,Agrobacterium)93)97)42)97,(Corynebacterium,(Corynebacterium,Corynebacterium)92)100)100);
(Nocardia,((((Bordetella,Bordetella)65,Bordetella)100,Azoarcus)100,(Bradyrhizobium,Rhodopseudomonas)100)100);
(Silicibacter,(Pseudomonas,((Ralstonia,(Burcholderia,Burcholderia)100)65,(Bordetella,Bordetella)100)100)100);
(Desulfotalea,(Pseudomonas,(Pseudomonas,Pseudomonas)99)99);
(Clostridium,(Vibrio,(Listeria,Listeria)100)100);
((Mesorhizobium,Sinorhizobium)99,(Acinetobacter,Yersinia));
(Mycoplasma,(((Wolinella,(Helicobacter,Helicobacter)98)80,Campylobacter)100,Prochlorococcus));
((Streptomyces,Streptomyces)100,(Agrobacterium,Erwinia));
((Methanosarcina,Methanosarcina)99,(Pseudomonas,(Streptomyces,Streptomyces)100)100);
(Streptomyces,((Pseudomonas,Pseudomonas)100,(Bradyrhizobium,Rhodopseudomonas)100)100);
((Porphyromonas,(Bacteroides,Bacteroides)100)89,((Chlorobium,Chromobacterium)93,((Shewanella,Coxiella)66,(Treponema,Treponema)98)99)99);
(((Azoarcus,Caulobacter)43,(Escherichia,(Yersinia,Yersinia)100)100)100,(Deinococcus,(Streptomyces,Streptomyces)100)100);
(Geobacter,(Azoarcus,((Pseudomonas,(Pseudomonas,Pseudomonas)76)98,(Shewanella,((Vibrio,(Vibrio,Vibrio)76)95,(((Yersinia,Yersinia)100,(Erwinia,Photorhabdus)36)71,(Salmonella,(Shigella,Escherichia)94)100)99)89)74)93)93);
(Pyrobaculum,((((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)81)96)100,((Methanopyrus,Methanobacterium)31,((Methanosarcina,Methanosarcina)100,(Archhaeoglobus,(Haroarcula,Halobacterium)100)58)68)36)25,((Methanobacterium,Methanobacterium)99,(Picrophilus,(Thermoplasma,Thermoplasma)100)100)24)83,(Aeropyrum,(Sulforobus,Sulforobus)100)98)98);
(((Shewanella,Pseudomonas)55,Pseudomonas)100,(Rhodopseudomonas,Bradyrhizobium));
(Pyrobaculum,(((Pyrococcus,Pyrococcus)62,Thermococcus)99,Methanobacterium));
(Leptospira,(Bdellovibrio,(Thermus,(Pirellula,Pirellula)100)43)43);
(Ralstonia,((Xanthomonas,Pseudomonas)87,Escherichia));
(Fusobacterium,((Clostridium,(Clostridium,Clostridium)90)98,(Thermoanaerobacter,(Bacillus,((Geobacillus,(Bacillus,Bacillus)93)99,(Staphylococcus,Staphylococcus)100)45)77)66)66);
(Bacillus,(Desulfotalea,(Bradyrhizobium,((((Synechosystis,Gloeobacter)97,Synechococcus)95,Leptospira)99,((Xanthomonas,(Xanthomonas,Xanthomonas)100)100,(Pirellula,Pirellula)100)100)59)90)90);
(Clostridium,(((((Escherichia,(Yersinia,Yersinia)100)91,(Pseudomonas,Acinetobacter)71)99,Deinococcus)63,Azoarcus)100,Bacillus));
((Pirellula,Pirellula)100,(Burcholderia,Burcholderia));
(Methanosarcina,(((Lactobacillus,(Lactobacillus,Lactobacillus)98)100,Enterococcus)93,(Bacillus,Bacillus)100)100);
(Aquifex,(((((((((((((((((((Erwinia,((Haemophilus,Pasteurella)62,Mannheimia)86)30,(Salmonella,(Shigella,Escherichia)76)51)18,(Yersinia,Yersinia)100)12,(Photorhabdus,(((Blochmannia,Buchnera)43,Buchnera)52,Wigglesworthia)93)11)47,(Idiomarina,((Vibrio,Vibrio)46,(Vibrio,Vibrio)53)85)70)22,Shewanella)75,(Neisseria,((((Ralstonia,(Burcholderia,Burcholderia)100)56,(Azoarcus,((Bordetella,Bordetella)54,Bordetella)100)57)51,Nitrosomonas)32,Chromobacterium)45)92)41,(Legionella,(Pseudomonas,(Pseudomonas,Pseudomonas)39)100)33)19,((Acinetobacter,(Methylococcus,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)95)87)100)67)34,(Coxiella,Francizella)41)32)85,(Campylobacter,(Wolinella,(Helicobacter,Helicobacter)41)99)88)43,(((Wolbachia,Wolbachia)100,(Anaplasma,Ehrlichia)95)100,(((Rickettsia,(Rickettsia,Rickettsia)100)100,((Gluconobacter,Zymomonas)41,(Bradyrhizobium,Rhodopseudomonas)98)32)43,(Silicibacter,((Mesorhizobium,(Sinorhizobium,Agrobacterium)98)46,(((Brucella,Brucella)50,Brucella)100,((Bartonella,Bartonella)87,Caulobacter)50)62)35)67)62)81)29,((Leptospira,Desulfotalea)33,(Desulfovibrio,Bdellovibrio)31)8)21,(Porphyromonas,(Bacteroides,Bacteroides)93)100)12,Geobacter)14,((Treponema,Treponema)100,(Borrelia,Borrelia)100)52),(Dehalococcoides,((Synechococcus,Prochlorococcus)89,((Nostos,Synechosystis)72,(Thermosynechococcus,Gloeobacter)42)52)64)52),(Thermoanaerobacter,((Clostridium,(Clostridium,Clostridium)66)96,(Pirellula,Pirellula)100)27)14),Chlorobium)7,((((Deinococcus,Thermus)49,(Fusobacterium,(Parachlamydia,(Chlamydophila,((Chlamydophila,Chlamydophila)51,Chlamydophila)73)97)99)38)9,Thermotoga)26,(((Leifsonia,((Tropheryma,(Bifidobacterium,(Corynebacterium,(Corynebacterium,Corynebacterium)98)100)34)19,(Nocardia,((Mycobacterium,(Mycobacterium,Mycobacterium)99)100,(Streptomyces,Streptomyces)98)41)48)5)35,Propionibacterium)99,(Symbiobacterium,(((Staphylococcus,Staphylococcus)100,(Oceanobacillus,(((Enterococcus,(((Lactococcus,(Streptococcus,(Streptococcus,(Streptococcus,Streptococcus)64)63)73)64,Streptococcus)52,(Lactobacillus,(Lactobacillus,Lactobacillus)97)54)29)52,(Listeria,Listeria)100)95,((Bacillus,((Bacillus,Bacillus)99,Geobacillus)33)17,(Bacillus,Bacillus)87)61)40)63)58,(Phytoplasma,((Mycoplasma,(Mycoplasma,Mycoplasma)89)100,(Mycoplasma,(Ureaplasma,(Mycoplasma,(Mycoplasma,(Mycoplasma,Mycoplasma)100)100)62)96)53)36)85)38)48)38)12)12);
((Streptococcus,Bacillus)96,(Streptomyces,Mesorhizobium));
(Clostridium,((((Oceanobacillus,Bacillus)62,Bacillus)57,(Staphylococcus,Enterococcus)46)67,Xanthomonas));
(Neisseria,(Nocardia,(Corynebacterium,Corynebacterium)100)100);
(Symbiobacterium,((Vibrio,Streptococcus)58,Lactobacillus));
(Halobacterium,(((Vibrio,Symbiobacterium)83,Lactobacillus)62,Chromobacterium));
((Bacillus,Bacillus)89,(Leptospira,((((Synechosystis,Thermosynechococcus)50,Geobacter)44,Pseudomonas)86,(Azoarcus,Rhodopseudomonas)100)68)68);
(Enterococcus,((Pseudomonas,Bordetella)97,Salmonella));
((Methanobacterium,Archhaeoglobus)49,(Desulfovibrio,((Desulfotalea,Clostridium)37,(Clostridium,(Treponema,Treponema)100)100)31)31);
(Pyrobaculum,(Methanopyrus,((Aeropyrum,(Sulforobus,Sulforobus)100)79,((Nanoarchaeum,(Pyrococcus,(Thermococcus,(Pyrococcus,Pyrococcus)72)43)100)65,(Methanobacterium,(Methanosarcina,Methanosarcina)100)98)48)32)32);
(Pyrobaculum,((Sulforobus,Sulforobus)97,(Aeropyrum,(Nanoarchaeum,((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)78)94)100,((Picrophilus,(Thermoplasma,Thermoplasma)97)100,((((Methanobacterium,Methanobacterium)85,Methanopyrus)34,Methanobacterium)17,(Archhaeoglobus,((Methanosarcina,Methanosarcina)100,(Halobacterium,Haroarcula)100)64)53)24)29)38)67)45)45);
(Fusobacterium,(Haemophilus,(Pasteurella,Mannheimia)49)49);
(Idiomarina,(Streptococcus,(Bacillus,Bacillus)100)100);
((Ralstonia,((Bordetella,Bordetella)61,Bordetella)100)68,(((Photorhabdus,(Yersinia,Yersinia)100)75,((Salmonella,(Shigella,Escherichia)100)100,Erwinia)42)100,((Pseudomonas,(Pseudomonas,Pseudomonas)76)100,(Chromobacterium,(Vibrio,(Vibrio,(Vibrio,Vibrio)59)37)100)60)96)96);
(Lactobacillus,(Erwinia,(Streptomyces,Streptomyces)64)64);
(Wigglesworthia,(Caulobacter,((Brucella,(Anaplasma,(Ehrlichia,(Wolbachia,Wolbachia)100)63)96)52,(Rickettsia,Rickettsia)100)57)57);
(Synechococcus,(Pseudomonas,(Nitrosomonas,Desulfovibrio)100)100);
(Symbiobacterium,((((((Staphylococcus,Staphylococcus)100,Bacillus)27,((Geobacillus,(Bacillus,Bacillus)99)33,(Bacillus,Bacillus)100)31)31,Oceanobacillus)67,((Listeria,Listeria)100,((Lactobacillus,Lactobacillus)100,(Enterococcus,(Lactobacillus,((Streptococcus,(Streptococcus,(Streptococcus,Streptococcus)98)62)99,(Streptococcus,Lactococcus)71)98)32)34)98)58)70,((Thermoanaerobacter,(Deinococcus,Thermus)94)60,((Prochlorococcus,Synechococcus)82,(Gloeobacter,(Thermosynechococcus,(Synechosystis,Nostos)86)82)51)100)77)77);
(Agrobacterium,(Vibrio,(Pasteurella,Mannheimia)100)100);
(Shigella,(((Chromobacterium,Salmonella)59,Escherichia)97,(Burcholderia,Burcholderia)100)100);
(Xanthomonas,((Streptomyces,Nocardia)88,Thermus));
(Geobacter,((Ralstonia,(Burcholderia,Burcholderia)100)97,(Azoarcus,(Xanthomonas,Methylococcus)97)84)84);
(Clostridium,(Bradyrhizobium,(Bacteroides,(Xanthomonas,(Erwinia,(Yersinia,Yersinia)100)100)45)45)45);
(Gloeobacter,((((Caulobacter,Gluconobacter)87,Chromobacterium)97,Vibrio)88,(Photorhabdus,(Burcholderia,Burcholderia)100)100)100);
(Burcholderia,((Pseudomonas,Vibrio)39,((Escherichia,Erwinia)90,(Xanthomonas,Pasteurella)97)76)76);
((((Shewanella,Treponema)74,Neisseria)97,(Gloeobacter,Nitrosomonas)58)100,(Bacillus,(Listeria,Listeria)68)68);
(Caulobacter,(Xanthomonas,(Burcholderia,Burcholderia)100)100);
(Nostos,((Rhodopseudomonas,Mesorhizobium)85,Vibrio));
(Streptomyces,(((Burcholderia,Burcholderia)100,Pseudomonas)97,Chromobacterium));
(Bdellovibrio,((Haroarcula,Halobacterium)100,Archhaeoglobus));
(((Nocardia,Bradyrhizobium)98,Mesorhizobium)100,(Bacillus,Bacillus));
(Pseudomonas,(Azoarcus,(Ralstonia,(Burcholderia,Burcholderia)100)68)68);
((((Pyrococcus,Sulforobus)50,Methanosarcina)67,Thermococcus)100,(Bacteroides,(Bacteroides,Porphyromonas)100)100);
((((Idiomarina,Shewanella)100,(Pseudomonas,Pseudomonas)99)85,Azoarcus)90,(Caulobacter,(Silicibacter,(Bradyrhizobium,(Mesorhizobium,(Agrobacterium,Sinorhizobium)100)93)93)52)52);
(Bdellovibrio,(Legionella,((Erwinia,Photorhabdus)100,(Pseudomonas,(Burcholderia,Burcholderia)100)98)100)100);
(Caulobacter,(((((Shewanella,((Idiomarina,(Vibrio,(Vibrio,(Vibrio,Vibrio)79)70)100)33,(Erwinia,Escherichia)79)46)43,Pseudomonas)53,Legionella)44,Bradyrhizobium)77,(Xanthomonas,Xanthomonas)100)100);
((Caulobacter,(Zymomonas,Gluconobacter)89)95,((Salmonella,Shigella)100,(Methylococcus,(Xanthomonas,Xanthomonas)100)96)96);
(Agrobacterium,(Propionibacterium,(((Corynebacterium,Corynebacterium)100,Corynebacterium)61,(Mycobacterium,Mycobacterium)100)98)98);
((((Haroarcula,Halobacterium)100,(Methanosarcina,Methanosarcina)100)13,(((Picrophilus,(Thermoplasma,Thermoplasma)98)91,((Methanobacterium,Methanobacterium)97,((Pyrococcus,(Thermococcus,Pyrococcus)49)81,Pyrococcus)100)54)8,(Methanobacterium,Archhaeoglobus)68)1)9,((((Sulforobus,Sulforobus)93,Aeropyrum)74,Pyrobaculum)37,((Treponema,Treponema)94,(Borrelia,Borrelia)100)100)100);
(((((Nostos,Synechosystis)75,Thermosynechococcus)83,(Synechococcus,Prochlorococcus)71)38,Gloeobacter)100,(Burcholderia,Burcholderia));
(Streptomyces,((Pseudomonas,Pseudomonas)14,Pseudomonas));
((Burcholderia,Ralstonia)100,(Xanthomonas,Xanthomonas));
(Thermoanaerobacter,((Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)99)52)77,(((Borrelia,Borrelia)100,Chlorobium)73,(Buchnera,((((Rickettsia,(Ehrlichia,(Wolbachia,Wolbachia)100)83)100,Bartonella)87,Gluconobacter)74,(Pirellula,Pirellula)100)55)66)90)90);
((Nocardia,(Corynebacterium,Corynebacterium)100)100,((Erwinia,Zymomonas)86,(Burcholderia,Burcholderia)100)100);
((((Ralstonia,(Burcholderia,Burcholderia)100)75,((Bordetella,Bordetella)99,Bordetella)100)81,Chromobacterium)100,(Pseudomonas,(Pseudomonas,Pseudomonas)77)77);
(Corynebacterium,((Lactobacillus,Streptococcus)100,Oceanobacillus));
((Methanobacterium,Methanobacterium)98,(Vibrio,(Bacteroides,Bacteroides)100)100);
((Gloeobacter,(Prochlorococcus,Synechococcus)93)47,(Sinorhizobium,(Silicibacter,Gluconobacter)91)91);
(Geobacillus,(Propionibacterium,((Bifidobacterium,Leifsonia)42,(((Corynebacterium,Corynebacterium)52,Corynebacterium)92,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)99)59)88)40)40);
(Clostridium,((Azoarcus,Nostos)70,(Idiomarina,(Vibrio,(Bacillus,Bacillus)100)60)99)99);
(Pyrococcus,(Thermosynechococcus,(Bacillus,Bacillus)100)100);
(((Methanopyrus,Thermotoga)50,(Aquifex,(Desulfovibrio,(Pyrobaculum,(Helicobacter,Wolinella)98)51)27)21)43,((Thermococcus,((Pyrococcus,Pyrococcus)72,Pyrococcus)75)100,(Methanobacterium,((Methanobacterium,Methanobacterium)83,(Archhaeoglobus,(Methanosarcina,Methanosarcina)100)95)49)70)70);
(Ralstonia,((Bradyrhizobium,Silicibacter)100,Mesorhizobium));
(Pyrobaculum,(Nanoarchaeum,(Aeropyrum,(Sulforobus,Sulforobus)100)97)97);
(Geobacillus,(Leptospira,(Treponema,Treponema)100)100);
((Xanthomonas,Acinetobacter)100,(Burcholderia,Burcholderia));
(Bradyrhizobium,(Bordetella,(Bordetella,Bordetella)26)26);
((Thermoanaerobacter,Symbiobacterium)100,((Treponema,Treponema)63,(Borrelia,Borrelia)100)100);
(Nostos,(Leptospira,((Xylella,Desulfovibrio)65,(Nocardia,Streptomyces)99)92)92);
(Bradyrhizobium,((Silicibacter,Burcholderia)34,Xanthomonas));
(Methanobacterium,(Symbiobacterium,(Haroarcula,((Deinococcus,Thermus)73,((Nostos,(Bacillus,Geobacillus)96)17,(Methanobacterium,((Pseudomonas,(Pseudomonas,Pseudomonas)93)100,(Acinetobacter,((Vibrio,(Vibrio,(Vibrio,Vibrio)94)98)95,(Shewanella,(((Haemophilus,(Mannheimia,Pasteurella)67)92,((Salmonella,(Escherichia,Shigella)100)100,(Erwinia,(Yersinia,Photorhabdus)84)94)36)34,((Methylococcus,((Chromobacterium,Azoarcus)45,((Burcholderia,Burcholderia)100,(Ralstonia,(Bordetella,(Bordetella,Bordetella)99)100)71)69)61)35,(((Agrobacterium,Sinorhizobium)77,(Mesorhizobium,(Silicibacter,(Rhodopseudomonas,Bradyrhizobium)99)51)65)62,(Brucella,(Brucella,Brucella)67)100)76)38)10)25)47)51)19)12)13)16)22)22);
((Clostridium,(Clostridium,Clostridium)43)100,((((Bacillus,Geobacillus)52,Bacillus)43,(Listeria,Listeria)100)77,(Lactobacillus,Lactobacillus)100)100);
(Streptomyces,(((Rhodopseudomonas,Bradyrhizobium)52,Sinorhizobium)100,Francizella));
((((Bordetella,Bordetella)93,Bordetella)100,Sinorhizobium)100,(Pirellula,Pirellula));
(Synechosystis,((Pseudomonas,Mesorhizobium)88,(Bacteroides,Bacteroides)100)100);
(Aeropyrum,(Pyrobaculum,(Burcholderia,Burcholderia)100)100);
((Synechosystis,Gloeobacter)100,(Thermococcus,Pyrococcus));
((((Leptospira,Legionella)70,Coxiella)92,(((Mycobacterium,(Mycobacterium,Mycobacterium)100)100,(Streptomyces,Streptomyces)100)77,(Nitrosomonas,(Chromobacterium,Azoarcus)100)99)96)99,(Parachlamydia,(Chlamydophila,(Chlamydophila,Chlamydophila)96)100)100);
(Pyrobaculum,(((Sulforobus,Sulforobus)88,Picrophilus)100,Aeropyrum));
(Fusobacterium,((Treponema,Clostridium)94,(Escherichia,(Propionibacterium,Thermoanaerobacter)100)98)98);
((((Ralstonia,(Burcholderia,Burcholderia)100)67,(Xanthomonas,(Xanthomonas,Xanthomonas)88)100)86,(Desulfotalea,Nitrosomonas)88)100,(Streptomyces,Nocardia));
((((Clostridium,Clostridium)31,Clostridium)100,Symbiobacterium)60,((Parachlamydia,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)97)53)100)92,(Deinococcus,Thermus)100)100);
(Staphylococcus,(((((Leifsonia,(Streptomyces,Streptomyces)100)91,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)84)64)56,Corynebacterium)92,Bradyrhizobium)85,(Leptospira,Parachlamydia)100)100);
((Agrobacterium,Sinorhizobium)100,(Nostos,Gloeobacter));
(Haroarcula,(Streptomyces,(Symbiobacterium,(Burcholderia,Burcholderia)100)52)52);
(Clostridium,((Nostos,(Treponema,Deinococcus)48)82,(Pirellula,Pirellula)100)100);
(Lactobacillus,(Acinetobacter,(Xylella,(Chlorobium,(Pseudomonas,Ralstonia)67)64)67)67);
(Pyrobaculum,(Aeropyrum,(Thermococcus,(Archhaeoglobus,(Methanopyrus,(Methanobacterium,Methanobacterium)97)58)36)90)90);
((Archhaeoglobus,Picrophilus)100,(Bacillus,Silicibacter));
((Streptomyces,Salmonella)81,(Haroarcula,(Thermoplasma,Thermoplasma)100)100);
((((Xanthomonas,Xanthomonas)100,Idiomarina)100,Bradyrhizobium)100,(Helicobacter,Helicobacter));
(Nostos,(Shewanella,(Xanthomonas,Caulobacter)70)70);
(Pyrococcus,((Wolinella,Shewanella)50,(Bacteroides,(Bacteroides,Porphyromonas)100)88)88);
(Synechosystis,((Pirellula,Pirellula)100,(Agrobacterium,Geobacter)100)100);
(Desulfotalea,((Helicobacter,Wolinella)41,(Helicobacter,(Campylobacter,Shewanella)91)74)74);
((Bacillus,Bacillus)100,(Corynebacterium,Corynebacterium));
(((((Corynebacterium,Corynebacterium)100,(Mycobacterium,Mycobacterium)100)74,Nocardia)100,(Thermus,Deinococcus)100)100,(Pirellula,Pirellula));
(Symbiobacterium,((((Bacillus,Bacillus)84,((Listeria,Listeria)100,(Bacillus,Bacillus)100)83)55,Bacillus)100,(Pirellula,Pirellula)100)100);
(Halobacterium,(((Xanthomonas,Xanthomonas)100,Xanthomonas)100,Vibrio));
(((Vibrio,Legionella)96,(Zymomonas,Caulobacter)100)100,(Porphyromonas,(Bacteroides,Bacteroides)100)100);
(Nostos,(((Pseudomonas,Pseudomonas)56,Pseudomonas)100,(Shewanella,(Vibrio,Vibrio)98)76)76);
(Thermotoga,(Thermoanaerobacter,(Symbiobacterium,(Clostridium,((Bacillus,Bacillus)81,(Bacillus,Bacillus)100)100)55)38)38);
(Streptomyces,(Streptococcus,(Streptococcus,Streptococcus)46)46);
(Methanopyrus,(Clostridium,(((Parachlamydia,(Clostridium,Treponema)72)60,Fusobacterium)88,(((((Bordetella,Bordetella)100,(Ralstonia,(Burcholderia,Burcholderia)100)65)90,Azoarcus)36,Chromobacterium)100,(Pseudomonas,Acinetobacter)100)49)35)35);
(Clostridium,((Listeria,Listeria)100,(Borrelia,Borrelia)100)100);
(((Thermoplasma,Picrophilus)97,Thermococcus)28,(Aquifex,((Coxiella,((Streptomyces,Streptomyces)100,(Bradyrhizobium,(Bartonella,Bartonella)100)61)57)61,(Methanobacterium,(Pirellula,Pirellula)100)40)23)23);
(Clostridium,(Bifidobacterium,(Thermoanaerobacter,(Thermus,(Synechococcus,Methylococcus)63)43)34)34);
(Nostos,(((Corynebacterium,Corynebacterium)84,Corynebacterium)100,Thermus));
(((Bordetella,Bordetella)88,Bordetella)100,(Xanthomonas,(Xanthomonas,Xanthomonas)50)50);
(Pseudomonas,(Corynebacterium,(Corynebacterium,Corynebacterium)50)50);
(Thermotoga,(((Staphylococcus,Staphylococcus)100,(Bacillus,Bacillus)100)86,(Pirellula,Pirellula)100)100);
(Aquifex,(Symbiobacterium,((Deinococcus,Thermus)97,(((Chlorobium,(Rickettsia,(Rickettsia,Rickettsia)100)100)30,(((Silicibacter,(Zymomonas,Caulobacter)20)25,((Rhodopseudomonas,Bradyrhizobium)100,(((Bartonella,Bartonella)100,(Brucella,(Brucella,Brucella)80)100)76,(Mesorhizobium,(Agrobacterium,Sinorhizobium)99)66)92)41)32,Gluconobacter)54)51,(((Gloeobacter,((Nostos,Thermosynechococcus)51,((Synechococcus,Prochlorococcus)99,Synechosystis)37)70)100,((Desulfotalea,Geobacter)37,(Dehalococcoides,Desulfovibrio)61)11),(((Xylella,((Xanthomonas,Xanthomonas)42,Xanthomonas)98)100,(((((Acinetobacter,(Pseudomonas,(Pseudomonas,Pseudomonas)37)63)86,((Coxiella,Methylococcus)42,(((Nitrosomonas,((Neisseria,Chromobacterium)44,((((Bordetella,Bordetella)59,Bordetella)100,(Ralstonia,(Burcholderia,Burcholderia)100)77)79,Azoarcus)81)66)84,Francizella)41,Legionella)22)37)45,Idiomarina)32,(Shewanella,((Vibrio,(Vibrio,(Vibrio,Vibrio)44)68)100,((Photorhabdus,((Salmonella,(Escherichia,Shigella)100)99,(Erwinia,(Yersinia,Yersinia)100)65)79)57,(Pasteurella,(Haemophilus,Mannheimia)99)99)71)40)26)37,(Blochmannia,(Wigglesworthia,(Buchnera,Buchnera)45)56)99)59)64,((Mycoplasma,((Anaplasma,Ehrlichia)96,(Wolbachia,Wolbachia)100)100)18,(((Bdellovibrio,(Porphyromonas,(Bacteroides,Bacteroides)100)100)62,((Fusobacterium,(Campylobacter,(Wolinella,(Helicobacter,Helicobacter)74)74)100)44,((Borrelia,Borrelia)100,(Treponema,Treponema)85)51)2),((Pirellula,Pirellula)100,((((Thermoanaerobacter,((Clostridium,Clostridium)91,Clostridium)99)25,(Bacillus,((((Enterococcus,(Lactobacillus,((Lactobacillus,Lactobacillus)100,(Lactococcus,(Streptococcus,((Streptococcus,(Streptococcus,Streptococcus)36)41,Streptococcus)47)91)94)39)22)77,(Listeria,Listeria)100)29,(((Bacillus,Bacillus)85,(Bacillus,Bacillus)100)31,(Oceanobacillus,(Staphylococcus,Staphylococcus)100)24)29)6,Geobacillus)35)68)12,(Leptospira,((((Tropheryma,Leifsonia)74,((Streptomyces,Streptomyces)100,((Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)94,(Corynebacterium,(Corynebacterium,Corynebacterium)84)100)93)39)16,Bifidobacterium)45,Propionibacterium)99)20)4,(Thermotoga,(Phytoplasma,(((Mycoplasma,Mycoplasma)38,Mycoplasma)98,((Parachlamydia,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)94)75)100)98,(Ureaplasma,(Mycoplasma,(Mycoplasma,(Mycoplasma,Mycoplasma)100)66)78)62)12)12)11)12)2)1))1)1)15)7)40)40);
(Ralstonia,(Pseudomonas,(((Escherichia,Erwinia)83,Idiomarina)25,(Shewanella,(Acinetobacter,(Vibrio,(Vibrio,Vibrio)74)67)36)28)39)39);
((Mesorhizobium,Caulobacter)94,(Bordetella,Escherichia));
(Streptomyces,(Oceanobacillus,(Bacillus,Bacillus)100)100);
(Haroarcula,(((Desulfotalea,Gloeobacter)48,Sinorhizobium)77,((Streptomyces,Streptomyces)100,(Mycobacterium,Mycobacterium)100)100)100);
(Streptomyces,((((Desulfotalea,(Idiomarina,(Vibrio,(Vibrio,(Vibrio,Vibrio)97)93)99)75)53,Sinorhizobium)55,Escherichia)100,Desulfovibrio));
(Mesorhizobium,(Streptomyces,(Mycobacterium,Mycobacterium)72)72);
(Thermoplasma,((Bacillus,Methanobacterium)85,Yersinia));
(((Bacillus,Bacillus)99,Bacillus)100,(Sinorhizobium,Agrobacterium));
(Methanobacterium,((((((Mycobacterium,Mycobacterium)100,Mycobacterium)100,Nocardia)100,(Streptomyces,Streptomyces)100)63,Propionibacterium)100,Geobacter));
(Gloeobacter,((Legionella,Chromobacterium)83,Mesorhizobium));
(Geobacter,(((Bacteroides,Bacteroides)100,Porphyromonas)100,Chlorobium));
(Sulforobus,(((Legionella,Nostos)39,Nocardia)76,Mesorhizobium));
((Thermoplasma,Thermoplasma)100,((Archhaeoglobus,(Pyrobaculum,Aeropyrum)56)66,(Aquifex,(((Wolinella,(Helicobacter,Campylobacter)69)61,Helicobacter)100,(((Leptospira,((Bacillus,(Streptomyces,Streptomyces)100)100,((Desulfovibrio,Geobacter)60,(Deinococcus,Thermus)76)75)69)43,(((Chlamydophila,Chlamydophila)94,(Chlamydophila,Chlamydophila)45)100,(Pirellula,Pirellula)100)38)43,(Sulforobus,Picrophilus)100)22)79)20)20);
(Gloeobacter,((Streptomyces,Burcholderia)86,Leifsonia));
((((Rhodopseudomonas,Gluconobacter)30,((Francizella,(Methylococcus,Streptomyces)99)68,Aeropyrum)68)70,(Xylella,(Sinorhizobium,Mesorhizobium)93)94)100,(Thermoplasma,Thermoplasma));
(Wolinella,(Bordetella,(Bordetella,Bordetella)54)54);
(Leptospira,(Rhodopseudomonas,(Vibrio,Vibrio)71)71);
(Thermus,(((Erwinia,Salmonella)84,Pseudomonas)100,Acinetobacter));
(Leptospira,(((((((Azoarcus,Chromobacterium)67,Mesorhizobium)27,(Xanthomonas,(Pseudomonas,(Burcholderia,Burcholderia)100)16)9)7,(((Bordetella,Bordetella)66,Bordetella)100,(Rhodopseudomonas,Bradyrhizobium)100)56)27,Agrobacterium)46,Caulobacter)100,(Coxiella,((Streptomyces,Streptomyces)100,((Sinorhizobium,(Pseudomonas,(Salmonella,(Shigella,Escherichia)98)100)100)100,(Pirellula,Pirellula)100)65)100)88)88);
(Gloeobacter,((Chlorobium,Streptomyces)55,(((Desulfovibrio,Wolinella)54,Synechosystis)55,((Synechococcus,Azoarcus)54,(Pirellula,Pirellula)100)39)90)90);
(Chromobacterium,((Photorhabdus,(Vibrio,Pseudomonas)100)83,((Salmonella,(Escherichia,Shigella)100)100,(Yersinia,Yersinia)100)56)56);
(Picrophilus,((Bacillus,Bacillus)100,(Propionibacterium,Bifidobacterium)100)100);
((((Pasteurella,(Mannheimia,Haemophilus)55)100,Neisseria)99,(Bordetella,(Bordetella,Bordetella)90)100)97,(Acinetobacter,(Xanthomonas,(Xanthomonas,Xanthomonas)83)93)93);
(Thermus,(((Pyrococcus,Pyrococcus)45,Pyrococcus)100,Aeropyrum));
(Fusobacterium,((Pseudomonas,Oceanobacillus)93,(Staphylococcus,(Streptococcus,Streptococcus)99)99)99);
(Bacteroides,((Yersinia,Yersinia)100,Vibrio));
((Oceanobacillus,Bacillus)91,((Vibrio,(Vibrio,Vibrio)97)99,((Bordetella,(Bordetella,Bordetella)69)100,(Wolinella,(Nocardia,(Streptomyces,Streptomyces)99)99)47)44)44);
(Parachlamydia,((Vibrio,Legionella)92,Azoarcus));
(Fusobacterium,((Bacteroides,Bacteroides)100,Porphyromonas));
(Pyrobaculum,((Sulforobus,Sulforobus)100,Aeropyrum));
(((Picrophilus,(Thermoplasma,Thermoplasma)100)100,(Sulforobus,Sulforobus)100)98,(((((Pyrococcus,Pyrococcus)93,Thermococcus)56,Pyrococcus)96,Thermoanaerobacter)92,((Aeropyrum,Pyrobaculum)99,((Thermotoga,Chlorobium)60,(Bacteroides,Bacteroides)100)100)100)100);
(Thermosynechococcus,(Deinococcus,((((Pseudomonas,(Pseudomonas,Pseudomonas)78)99,((Idiomarina,(Shewanella,(Vibrio,(Vibrio,Vibrio)93)88)73)99,(Xanthomonas,(Xanthomonas,Xanthomonas)72)100)68)45,((Bordetella,(Bordetella,Bordetella)81)100,(Ralstonia,(Burcholderia,Burcholderia)100)95)70)74,(Streptomyces,Streptomyces)100)33)33);
(Caulobacter,(((Xanthomonas,Xanthomonas)99,Xanthomonas)100,Ralstonia));
((Sinorhizobium,Mesorhizobium)46,(Methanosarcina,Methanosarcina));
(Symbiobacterium,((((((Streptococcus,Streptococcus)95,Streptococcus)89,Streptococcus)98,Lactococcus)95,Lactobacillus)96,(Bacteroides,Clostridium)96)96);
(((Coxiella,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)99)98)100)19,Wigglesworthia)44,(Nitrosomonas,((Chromobacterium,Ralstonia)83,(Bordetella,(Bordetella,Bordetella)52)100)92)92);
(Aquifex,((Bdellovibrio,Oceanobacillus)95,(Vibrio,(Pirellula,Pirellula)100)57)57);
(Chromobacterium,((((Erwinia,Photorhabdus)43,Salmonella)89,Methylococcus)91,Mannheimia));
((Shewanella,Pseudomonas)100,(Streptomyces,(Mycobacterium,Mycobacterium)100)100);
(Nostos,((((((Chlamydophila,((Chlamydophila,Chlamydophila)58,Chlamydophila)96)100,(Rickettsia,(Rickettsia,Rickettsia)76)100)35,(Wolinella,Parachlamydia)50)77,Legionella)100,Geobacter)100,Methylococcus));
(((Bordetella,Bordetella)81,Bordetella)100,(Pseudomonas,(Pseudomonas,(Xanthomonas,(Xanthomonas,Xanthomonas)96)100)29)29);
(Thermoanaerobacter,(((((Pseudomonas,Pseudomonas)58,Pseudomonas)97,Shewanella)49,Idiomarina)99,Leptospira));
(Bradyrhizobium,((Bordetella,Bordetella)25,Xanthomonas));
(Aquifex,((((Methanobacterium,Methanobacterium)100,(((Aeropyrum,Methanopyrus)81,Haroarcula)60,Methanobacterium)58)53,(Archhaeoglobus,(Methanosarcina,Methanosarcina)100)64)100,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)61)97)98)98);
(Bifidobacterium,(Rhodopseudomonas,(Gluconobacter,Bradyrhizobium)38)38);
(Lactococcus,(Campylobacter,(Escherichia,Shigella)100)100);
(Deinococcus,(Chromobacterium,((Streptomyces,(Caulobacter,(Bradyrhizobium,Rhodopseudomonas)98)100)68,(Brucella,(Brucella,Brucella)100)100)85)85);
((Symbiobacterium,Clostridium)94,(Bacillus,(Gluconobacter,(Staphylococcus,Staphylococcus)100)96)96);
((((((Salmonella,(Erwinia,(Yersinia,Yersinia)100)85)85,Photorhabdus)86,(Vibrio,(Vibrio,(Vibrio,Vibrio)99)63)100)100,Bradyrhizobium)38,(Pseudomonas,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)62)100)100)100)73,((Streptomyces,Streptomyces)100,(Nocardia,(Mycobacterium,Mycobacterium)100)100)100);
(Chromobacterium,((Vibrio,(Vibrio,(Vibrio,Vibrio)46)72)100,((((Salmonella,(Escherichia,Shigella)100)69,Erwinia)44,(Photorhabdus,(Yersinia,Yersinia)100)86)93,(Pasteurella,(Mannheimia,Haemophilus)51)100)74)74);
(Streptomyces,((Xanthomonas,(Xanthomonas,Xanthomonas)99)100,Azoarcus));
((((Pseudomonas,(Mesorhizobium,(Agrobacterium,Bradyrhizobium)73)87)50,(Acinetobacter,Ralstonia)96)61,(Mycobacterium,Mycobacterium)100)100,(Pirellula,Pirellula));
(Thermus,(Geobacillus,((Bacillus,Bacillus)100,(Bacillus,Bacillus)100)54)54);
(Archhaeoglobus,(Geobacter,(Desulfotalea,Shewanella)94)94);
(Thermus,((Yersinia,Chromobacterium)95,Xylella));
(Bacillus,((Symbiobacterium,Thermoanaerobacter)51,(Clostridium,Clostridium)95)95);
((Salmonella,Mannheimia)100,(Bradyrhizobium,Rhodopseudomonas));
((Bradyrhizobium,Sinorhizobium)100,(Pirellula,Pirellula));
(Pyrobaculum,(Staphylococcus,(Mycoplasma,Ureaplasma)90)90);
(Deinococcus,((Bacillus,((Geobacillus,Bacillus)44,Oceanobacillus)28)47,(Bacillus,Bacillus)100)100);
((Bacteroides,Bacteroides)100,(Streptomyces,(Shigella,Escherichia)100)100);
(Gloeobacter,((Streptococcus,Streptococcus)100,(Listeria,Listeria)100)100);
(((Silicibacter,(Legionella,Azoarcus)54)27,(Pseudomonas,Chromobacterium)45)95,(Caulobacter,(Bradyrhizobium,Sinorhizobium)56)56);
(Helicobacter,(Pseudomonas,(Shewanella,(Vibrio,Vibrio)100)53)53);
(Aquifex,(((((((((((((((((((Escherichia,Salmonella)79,Shigella)89,(Pasteurella,(Haemophilus,Mannheimia)82)77)41,Erwinia)30,(Yersinia,Yersinia)88)39,(((Blochmannia,Wigglesworthia)40,Buchnera)17,Buchnera)37)12,((Vibrio,(Vibrio,(Vibrio,Vibrio)91)70)56,(Shewanella,Idiomarina)32)76)7,Photorhabdus)29,Acinetobacter)21,(Pseudomonas,(Pseudomonas,Pseudomonas)51)88)9,Methylococcus)18,(Legionella,(Francizella,Coxiella)60)26)29,(((((Nitrosomonas,Azoarcus)38,(Ralstonia,(((Bordetella,Bordetella)54,Bordetella)100,(Burcholderia,Burcholderia)100)61)92)34,(Neisseria,Chromobacterium)79)45,((((Rickettsia,(Rickettsia,Rickettsia)84)100,Gluconobacter)43,((Ehrlichia,Anaplasma)48,(Wolbachia,Wolbachia)98)88)59,((Silicibacter,Zymomonas)47,((Caulobacter,(Bradyrhizobium,Rhodopseudomonas)99)64,(Mesorhizobium,((Sinorhizobium,Agrobacterium)99,((Bartonella,Bartonella)99,((Brucella,Brucella)52,Brucella)100)80)50)79)43)77)38)21,((Chlorobium,(Porphyromonas,(Bacteroides,Bacteroides)100)100)94,Leptospira)24)4)2,(Xylella,((Xanthomonas,Xanthomonas)74,Xanthomonas)92)100)7,(((((Bacillus,Bacillus)100,((((Bacillus,Bacillus)100,((Oceanobacillus,(((Mycoplasma,(Mycoplasma,Mycoplasma)49)82,((Mycoplasma,Ureaplasma)77,(Mycoplasma,(Mycoplasma,Mycoplasma)87)94)97)44,(Staphylococcus,Staphylococcus)98)1),(((Listeria,Listeria)100,(Lactobacillus,(Lactobacillus,Lactobacillus)98)74)37,(Enterococcus,(Lactococcus,((Streptococcus,Streptococcus)80,(Streptococcus,(Streptococcus,Streptococcus)62)63)93)71)68)37)),Bacillus),(Geobacillus,Phytoplasma)32))6,(((Synechococcus,Prochlorococcus)83,Thermosynechococcus)71,(Gloeobacter,(Nostos,Synechosystis)34)62)97)2,(Thermoanaerobacter,((Clostridium,(Clostridium,Clostridium)39)99,Thermotoga)41)22)1,Symbiobacterium))1,(((Campylobacter,(Wolinella,(Helicobacter,Helicobacter)83)92)97,(Bdellovibrio,Fusobacterium)44)4,((Deinococcus,Thermus)48,(Dehalococcoides,(((Treponema,Treponema)100,(Mycoplasma,(Borrelia,Borrelia)100)50)19,(Parachlamydia,(((Chlamydophila,Chlamydophila)35,Chlamydophila)15,Chlamydophila)100)92)5)4)))2,((Desulfovibrio,Geobacter)25,Desulfotalea)33)3,(Tropheryma,(((Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)99)97)93,((Leifsonia,(Streptomyces,Streptomyces)99)29,(Bifidobacterium,Propionibacterium)24)43)41,(Corynebacterium,(Corynebacterium,Corynebacterium)59)97)56)99)51,(Pirellula,Pirellula)100)100);
(Mycoplasma,((Wolinella,Helicobacter)57,(Helicobacter,Campylobacter)47)47);
(Thermoanaerobacter,(Desulfovibrio,(((Vibrio,(Vibrio,Vibrio)61)86,Vibrio)96,(Erwinia,((Salmonella,(Escherichia,Shigella)100)96,(Yersinia,Yersinia)100)87)90)84)84);
(Bacillus,(((Xanthomonas,Xanthomonas)59,Xanthomonas)100,Silicibacter));
(Aquifex,(((Leptospira,Bdellovibrio)92,(Desulfovibrio,Geobacter)100)82,(Pirellula,Pirellula)100)100);
(Methanobacterium,(Methylococcus,(Pirellula,Pirellula)100)100);
((Bacillus,Bacillus)100,(Photorhabdus,(Mycobacterium,Mycobacterium)100)100);
((((Bacillus,(Bacillus,Bacillus)100)50,Bacillus)100,Lactobacillus)100,(Halobacterium,Haroarcula));
(Streptococcus,(((((Escherichia,Shigella)90,Salmonella)100,Pasteurella)82,Mesorhizobium)80,Propionibacterium));
(Dehalococcoides,(((Mycoplasma,(Mycoplasma,Mycoplasma)100)86,Ureaplasma)99,(Mycoplasma,Mycoplasma)100)100);
(Clostridium,((((Archhaeoglobus,((Pyrococcus,(Pyrococcus,Pyrococcus)69)100,(Halobacterium,Methanobacterium)39)60)100,(Picrophilus,(Sulforobus,Sulforobus)68)94)100,Pyrobaculum)75,(Methanopyrus,(Methanosarcina,Methanosarcina)100)49)49);
(Nostos,((Agrobacterium,Sinorhizobium)39,Azoarcus));
(Thermotoga,(Mesorhizobium,(Lactobacillus,Lactobacillus)100)100);
(Halobacterium,(Bdellovibrio,(((((Fusobacterium,Clostridium)78,Legionella)22,((((Corynebacterium,Nocardia)95,(Azoarcus,Pseudomonas)64)65,(Vibrio,(Vibrio,(Vibrio,Vibrio)98)100)96)50,Photorhabdus)69)22,Geobacillus)39,(Staphylococcus,Staphylococcus)100)69)69);
((Staphylococcus,Staphylococcus)100,(Streptomyces,(Shigella,Escherichia)100)100);
(Thermus,(Sinorhizobium,(Shewanella,Campylobacter)100)100);
(((Burcholderia,Burcholderia)100,Ralstonia)100,(Pseudomonas,Pseudomonas));
(Staphylococcus,((Acinetobacter,Pseudomonas)100,(Shigella,Escherichia)100)100);
((Caulobacter,Mesorhizobium)49,(Acinetobacter,(Bordetella,Bordetella)100)100);
(Gloeobacter,((Synechosystis,(Dehalococcoides,Thermosynechococcus)30)56,Nostos));
(((Mycobacterium,Mycobacterium)100,Mycobacterium)100,(Legionella,(Nocardia,(Pseudomonas,(Pseudomonas,Bradyrhizobium)100)56)100)100);
(Leptospira,(Listeria,(Bacillus,Bacillus)99)99);
(Symbiobacterium,(Bacillus,(Geobacillus,(Bacillus,Bacillus)99)52)52);
((Methanosarcina,Methanosarcina)100,((Desulfotalea,Geobacter)70,((Chlorobium,Desulfovibrio)49,(Methanobacterium,(Leptospira,(Pirellula,Pirellula)100)100)99)46)46);
(Methanobacterium,(((Acinetobacter,(Pseudomonas,Pseudomonas)87)55,Ureaplasma)97,Wolinella));
(Clostridium,((Bacillus,Bacillus)100,(Silicibacter,((Lactococcus,Bacillus)97,(Lactobacillus,(Listeria,Listeria)100)100)100)100)100);
((Methanobacterium,((((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)86)100)100,Archhaeoglobus)55,Methanobacterium)39,(Picrophilus,(Thermoplasma,Thermoplasma)100)100)70)25,(((((((Clostridium,((((Fusobacterium,Treponema)100,(Bifidobacterium,(Haemophilus,Streptococcus)100)94)98,(Tropheryma,((Streptomyces,Streptomyces)100,((Propionibacterium,(Corynebacterium,Corynebacterium)98)98,(Leifsonia,(Corynebacterium,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)88)72)61)30)62)63)88)48,Thermoanaerobacter)14)8,(Francizella,Parachlamydia)79)10,(Deinococcus,Thermus)54)27,Thermotoga)13,(Dehalococcoides,(Geobacillus,(((Bacillus,Bacillus)100,Bacillus)57,((Bacillus,Bacillus)92,(Oceanobacillus,(((Listeria,Listeria)100,Pasteurella)67,(Staphylococcus,Staphylococcus)100)75)49)42)50)100)30)31,((Haroarcula,Halobacterium)100,(Methanosarcina,Methanosarcina)100)99)6,(Methanobacterium,(Methanopyrus,((Pyrobaculum,Aeropyrum)43,(Sulforobus,Sulforobus)100)100)73)15)15);
(Methanobacterium,((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)45)100)87,(Parachlamydia,((((Propionibacterium,((Streptomyces,Streptomyces)100,(Nocardia,((Corynebacterium,(Corynebacterium,Corynebacterium)89)100,(Mycobacterium,(Mycobacterium,Mycobacterium)100)71)56)100)19)28,Leifsonia)98,Acinetobacter)48,(Clostridium,(Bacillus,Bacillus)100)64)74)54)54);
(((Pseudomonas,Pseudomonas)51,Pseudomonas)93,(Azoarcus,(Bordetella,Bordetella)100)100);
(Agrobacterium,((Staphylococcus,Staphylococcus)98,((((Bacillus,Bacillus)100,(Oceanobacillus,(Bacillus,Bacillus)53)50)48,(Bacillus,Geobacillus)59)98,(Listeria,Listeria)100)67)67);
(Leptospira,(Porphyromonas,(Bacteroides,Bacteroides)100)100);
((((Shewanella,(Vibrio,Vibrio)100)94,(Propionibacterium,Corynebacterium)40)20,(Bdellovibrio,Bifidobacterium)34)100,(Streptomyces,Streptomyces));
(Enterococcus,(Streptomyces,(Streptomyces,Nocardia)66)66);
(Gloeobacter,(Bradyrhizobium,(Bdellovibrio,(Streptomyces,Streptomyces)98)92)92);
(Methanosarcina,((Deinococcus,Haroarcula)52,Bdellovibrio));
(((Neisseria,(Ralstonia,Azoarcus)53)14,(Nitrosomonas,Chromobacterium)43)52,(Methylococcus,((Legionella,Acinetobacter)47,((Pseudomonas,Pseudomonas)100,((Xylella,((Xanthomonas,Xanthomonas)83,Xanthomonas)100)100,(Shewanella,(Vibrio,(Vibrio,(Vibrio,Vibrio)89)59)100)64)33)23)5)5);
(Bacillus,(Bradyrhizobium,(Gloeobacter,Nostos)79)79);
(Aquifex,(Azoarcus,(Thermosynechococcus,Thermus)98)98);
((Methanosarcina,Methanosarcina)100,((Oceanobacillus,Mycobacterium)75,(Nocardia,Streptomyces)100)100);
(Aquifex,(Silicibacter,(Rhodopseudomonas,Bradyrhizobium)99)99);
(Gloeobacter,(Streptomyces,(Mesorhizobium,Geobacter)31)31);
(Chromobacterium,((((Shigella,Escherichia)100,Salmonella)98,Erwinia)97,Pseudomonas));
((((Bradyrhizobium,Rhodopseudomonas)100,Sinorhizobium)99,Idiomarina)100,(Streptomyces,Streptomyces));
(Haroarcula,(Bordetella,(Bordetella,Bordetella)56)56);
(Desulfovibrio,((Francizella,Coxiella)63,(Xylella,(Ralstonia,Azoarcus)87)68)68);
(Aquifex,(((Bacteroides,Bacteroides)98,Porphyromonas)96,Chlorobium));
(Thermotoga,((Symbiobacterium,Thermoanaerobacter)68,(Clostridium,Clostridium)97)97);
(Caulobacter,(Shewanella,(Xanthomonas,Xanthomonas)100)100);
((((Xanthomonas,Xanthomonas)60,Xanthomonas)100,Acinetobacter)100,(Burcholderia,Burcholderia));
(Methanosarcina,((Synechosystis,Nostos)68,Gloeobacter));
(Nostos,(Pseudomonas,(Mycobacterium,Mycobacterium)100)100);
(Thermotoga,(Synechosystis,(Nostos,Thermosynechococcus)94)94);
(Rhodopseudomonas,((Vibrio,Vibrio)98,Vibrio));
(Methanosarcina,((((Pseudomonas,Photorhabdus)95,Bradyrhizobium)84,Propionibacterium)100,Enterococcus));
(Fusobacterium,(((Bacillus,Bacillus)100,Clostridium)40,(Listeria,Listeria)100)100);
(Archhaeoglobus,(Streptomyces,(((((Silicibacter,((Synechosystis,(Porphyromonas,(Bacteroides,Bacteroides)100)100)47,(Deinococcus,Idiomarina)66)95)22,Geobacter)12,Desulfovibrio)29,((Streptococcus,Bacillus)93,(Campylobacter,(Helicobacter,(Helicobacter,Wolinella)66)82)88)75)91,((Pasteurella,((Bordetella,(Bordetella,Bordetella)84)100,((Pseudomonas,((Brucella,(Brucella,Brucella)74)100,(Sinorhizobium,Agrobacterium)76)100)43,(Bartonella,Bartonella)100)20)40)100,(Vibrio,(Vibrio,Vibrio)57)100)81)94)94);
(Wolinella,(((Pasteurella,Haemophilus)81,Mannheimia)100,Agrobacterium));
(((((Pseudomonas,(Pseudomonas,Pseudomonas)43)100,(Coxiella,Legionella)86)30,(((Haemophilus,(Pasteurella,Mannheimia)58)100,(Shewanella,(Vibrio,(Vibrio,(Vibrio,Vibrio)85)96)99)72)45,Idiomarina)53)27,Acinetobacter)85,(Neisseria,(Chromobacterium,(Nitrosomonas,(Azoarcus,((Bordetella,(Bordetella,Bordetella)67)100,(Ralstonia,(Burcholderia,Burcholderia)100)99)42)47)96)45)45);
((Pseudomonas,Pseudomonas)100,(Nitrosomonas,(Burcholderia,Burcholderia)100)100);
(Thermococcus,(Desulfovibrio,(Azoarcus,(Desulfotalea,(Bifidobacterium,Fusobacterium)67)64)64)64);
(((Salmonella,(Shigella,Escherichia)100)100,(Photorhabdus,(Erwinia,(Yersinia,Yersinia)100)90)48)41,(Ralstonia,(Nitrosomonas,(((Bordetella,Bordetella)64,Bordetella)100,(Burcholderia,Burcholderia)100)76)68)68);
(Haroarcula,(((Pirellula,Pirellula)100,(Mycobacterium,Mycobacterium)100)53,((Synechosystis,(Legionella,Methylococcus)81)100,(Idiomarina,(Pseudomonas,(Xanthomonas,Xanthomonas)100)88)100)37)37);
(Pyrobaculum,((Sulforobus,Sulforobus)100,(Aeropyrum,(((((Methanobacterium,Methanobacterium)81,Methanobacterium)23,(Methanopyrus,(Archhaeoglobus,(Methanosarcina,Methanosarcina)100)62)48)66,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)32)89)98)70,(Thermoplasma,Thermoplasma)100)69)72)72);
(Thermotoga,((Methanopyrus,(Halobacterium,Haroarcula)91)49,((Methylococcus,Archhaeoglobus)42,(Methanobacterium,(Methanosarcina,Methanosarcina)100)26)40)40);
(((Mannheimia,(Neisseria,Bordetella)45)58,Chromobacterium)63,(Erwinia,Photorhabdus));
(Desulfotalea,((((Salmonella,(Escherichia,Shigella)100)85,(Erwinia,(Yersinia,Yersinia)100)80)97,(Vibrio,Vibrio)69)44,(Photorhabdus,((Pseudomonas,(Pseudomonas,Pseudomonas)95)99,(Chromobacterium,(Bordetella,(Bordetella,Bordetella)100)100)99)62)84)84);
(Bdellovibrio,(Pseudomonas,(Pseudomonas,Pseudomonas)81)81);
((Lactococcus,Enterococcus)82,(Erwinia,(Bacteroides,Bacteroides)99)99);
(Listeria,(((Deinococcus,Xanthomonas)95,Agrobacterium)100,Azoarcus));
(Streptomyces,((Caulobacter,(Ralstonia,((Bordetella,Bordetella)76,Bordetella)100)96)64,(Pseudomonas,(Xanthomonas,Xanthomonas)100)51)51);
(Methanobacterium,((((Corynebacterium,Corynebacterium)100,Corynebacterium)100,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)100,(Propionibacterium,Streptomyces)100)100);
(Clostridium,((Streptococcus,Geobacillus)97,(Bacillus,(Bacillus,Bacillus)100)44)44);
(((Streptomyces,Nocardia)90,Chromobacterium)100,(Bacillus,Enterococcus));
(Clostridium,((Enterococcus,Lactococcus)25,(Propionibacterium,Streptococcus)45)45);
((((((Pseudomonas,Pseudomonas)67,Pseudomonas)100,(Streptomyces,Streptomyces)100)40,(Idiomarina,(Shewanella,Acinetobacter)48)64)44,Ralstonia)100,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100);
(Pyrobaculum,((Aeropyrum,Sulforobus)87,((Methanobacterium,(Halobacterium,(Methanosarcina,Methanosarcina)99)79)56,(Picrophilus,(Thermoplasma,Thermoplasma)97)100)93)93);
((Streptomyces,Shewanella)100,(Pirellula,Pirellula));
(Sulforobus,((Treponema,Treponema)94,(Borrelia,Borrelia)100)100);
(Gloeobacter,((Haroarcula,Aeropyrum)63,Halobacterium));
(Clostridium,(Ralstonia,(Bacillus,(Bacillus,Bacillus)100)98)98);
(((Thermosynechococcus,Synechosystis)65,Nostos)100,(Burcholderia,Burcholderia));
(((Bacillus,Bacillus)100,Geobacillus)94,(Synechosystis,(Sinorhizobium,Mesorhizobium)100)100);
(Thermus,(Caulobacter,(Acinetobacter,(Burcholderia,Burcholderia)100)97)97);
(Gluconobacter,((Xanthomonas,Xanthomonas)99,Xanthomonas));
(Rickettsia,(Photorhabdus,(Pseudomonas,Pseudomonas)82)82);
((Burcholderia,Burcholderia)100,(Escherichia,Shigella));
(Streptomyces,((Bradyrhizobium,(Sinorhizobium,(Pseudomonas,(Yersinia,Yersinia)100)100)83)77,(Bordetella,Bordetella)100)100);
(Chlorobium,(Archhaeoglobus,(Methanosarcina,Methanosarcina)100)100);
(Desulfotalea,(Francizella,(Idiomarina,(((Shewanella,Vibrio)84,(Vibrio,(Vibrio,Vibrio)53)100)34,(Pseudomonas,Pseudomonas)99)19)54)54);
(Thermotoga,(((((Xanthomonas,Xanthomonas)100,Xanthomonas)100,Caulobacter)100,Bacteroides)100,(Streptomyces,Bacillus)84)84);
(Bdellovibrio,((Neisseria,Gluconobacter)89,Chromobacterium));
(Pyrococcus,(Lactobacillus,((((Streptococcus,Streptococcus)70,Streptococcus)93,Lactococcus)89,(Staphylococcus,Staphylococcus)100)52)52);
(Geobacter,((((Xanthomonas,Xanthomonas)66,Xanthomonas)100,Xylella)100,(Ralstonia,(Burcholderia,Burcholderia)100)100)100);
(Thermoanaerobacter,((((Oceanobacillus,Bacillus)88,(Bacillus,Bacillus)100)83,(Listeria,Listeria)100)77,(Nocardia,(Deinococcus,((Streptomyces,Streptomyces)99,(Xanthomonas,Xanthomonas)100)72)80)71)71);
(Fusobacterium,(Sinorhizobium,((Enterococcus,(Listeria,Listeria)100)100,(((Salmonella,Clostridium)91,Bacillus)68,(Escherichia,Shigella)100)100)71)71);
(Mesorhizobium,((Bordetella,Bordetella)100,Ralstonia));
(((Xanthomonas,Xanthomonas)85,Xanthomonas)100,(Caulobacter,Gluconobacter));
(Desulfovibrio,(((Bordetella,Bordetella)100,Pseudomonas)99,(Chromobacterium,Shewanella)100)100);
(Fusobacterium,((Porphyromonas,Symbiobacterium)100,Thermoanaerobacter));
(Fusobacterium,(Clostridium,(Listeria,Listeria)100)100);
(Parachlamydia,((((Synechosystis,Nostos)43,Thermosynechococcus)89,Gloeobacter)53,Synechococcus));
((((((Salmonella,(Shigella,Escherichia)100)99,Erwinia)45,(Yersinia,Yersinia)100)76,Photorhabdus)100,Methylococcus)100,((Azoarcus,Nitrosomonas)86,((Ralstonia,(Burcholderia,Burcholderia)100)100,(Bordetella,(Bordetella,Bordetella)59)100)53)53);
(Chromobacterium,(Streptomyces,(Tropheryma,Corynebacterium)36)36);
(Azoarcus,(((Xylella,Xanthomonas)65,Xanthomonas)53,(Salmonella,(Erwinia,Photorhabdus)64)100)100);
(Bacteroides,(Chromobacterium,((Xylella,(Xanthomonas,Xanthomonas)100)100,(Burcholderia,Burcholderia)100)100)100);
(Symbiobacterium,((Bacillus,Bacillus)75,(Oceanobacillus,(Bacillus,Bacillus)100)93)93);
((Pseudomonas,Streptomyces)86,(Pirellula,Pirellula));
(Clostridium,(Bacillus,(Bradyrhizobium,Rhodopseudomonas)48)48);
(((Prochlorococcus,Synechococcus)99,Thermosynechococcus)100,(Caulobacter,Bdellovibrio));
(Thermococcus,(Legionella,(((Bradyrhizobium,(Sinorhizobium,(Brucella,Brucella)100)69)92,Acinetobacter)59,((Bdellovibrio,Mesorhizobium)75,(Zymomonas,((Nocardia,(Streptomyces,Streptomyces)73)100,(Nostos,(Pseudomonas,(Bordetella,(Bordetella,Bordetella)90)100)88)100)58)54)93)81)81);
(Leptospira,(((Parachlamydia,Azoarcus)67,Methylococcus)67,Bdellovibrio));
((((Helicobacter,Helicobacter)87,Wolinella)91,(Bradyrhizobium,Campylobacter)80)100,(Pirellula,Pirellula));
(Halobacterium,((Erwinia,(Pirellula,Pirellula)100)57,((Synechococcus,Prochlorococcus)91,(Corynebacterium,Streptomyces)100)98)98);
(Methanopyrus,(Xanthomonas,(Pirellula,Pirellula)100)100);
(Clostridium,((Streptococcus,Treponema)56,(Bacillus,Bacillus)100)100);
(Thermus,(((Mycobacterium,Mycobacterium)100,Mycobacterium)100,Deinococcus));
(Pyrobaculum,((Sulforobus,Picrophilus)98,(Thermoplasma,Thermoplasma)100)100);
(Wigglesworthia,((Ureaplasma,Mycoplasma)58,(Mycoplasma,Mycoplasma)90)90);
(Synechococcus,(Brucella,(Mesorhizobium,(Burcholderia,Burcholderia)100)89)89);
((Pyrobaculum,Deinococcus)100,(Pirellula,Pirellula));
((Mesorhizobium,(Agrobacterium,Sinorhizobium)100)99,((Bordetella,(Bordetella,Bordetella)98)100,(Silicibacter,((Vibrio,(Vibrio,(Vibrio,Vibrio)99)95)100,(Pseudomonas,(Pseudomonas,Pseudomonas)63)100)76)93)93);
(Chlorobium,((Geobacter,Methylococcus)100,(Mycobacterium,Mycobacterium)100)100);
(Sulforobus,((((Pseudomonas,(Desulfovibrio,Legionella)68)53,Chromobacterium)100,Pseudomonas)89,Mesorhizobium));
((Salmonella,Vibrio)100,(Azoarcus,(Bordetella,Bordetella)100)100);
(Symbiobacterium,((Streptomyces,(Photorhabdus,Erwinia)100)100,(Pirellula,Pirellula)100)100);
(Streptococcus,((Wolinella,Bacillus)37,Vibrio));
(((((Xanthomonas,Xanthomonas)68,Xanthomonas)100,Ralstonia)76,Pseudomonas)100,(Gloeobacter,Nostos));
(((Legionella,Clostridium)62,Chromobacterium)100,(Methanosarcina,Methanosarcina));
(Ralstonia,(Nocardia,(Corynebacterium,Corynebacterium)100)100);
(Thermus,(Helicobacter,((Helicobacter,Wolinella)66,(Pseudomonas,Mannheimia)97)66)66);
(Aquifex,(Dehalococcoides,(((Clostridium,Clostridium)38,Clostridium)86,(Thermoanaerobacter,(Desulfotalea,(((Geobacter,Thermotoga)38,(Pirellula,Pirellula)100)3,((((((Desulfovibrio,Parachlamydia)27,Chlorobium)3,(((Enterococcus,((Porphyromonas,(Chromobacterium,(Bacteroides,Bacteroides)100)42)98,Bifidobacterium)11)1,((Lactococcus,(((Streptococcus,(Streptococcus,Streptococcus)29)25,Streptococcus)29,Streptococcus)67)69,(Lactobacillus,(Staphylococcus,Staphylococcus)100)13)4)4,((Lactobacillus,Lactobacillus)99,Francizella)17)1),(Thermus,((((Azoarcus,(Ralstonia,(Burcholderia,Burcholderia)100)91)47,((Methylococcus,(Xanthomonas,(Xanthomonas,Xanthomonas)98)99)71,(Legionella,(Pseudomonas,(Pseudomonas,Pseudomonas)72)65)44)6)18,(Idiomarina,(Acinetobacter,(Shewanella,((Pasteurella,(Mannheimia,Haemophilus)89)71,((((Erwinia,(Yersinia,Yersinia)100)69,Photorhabdus)55,(Salmonella,(Escherichia,Shigella)100)95)62,(Vibrio,(Vibrio,(Vibrio,Vibrio)48)72)100)50)40)67)29)20)24,(Deinococcus,Silicibacter)43)2)3),(Fusobacterium,Bdellovibrio)54)1,((Neisseria,Symbiobacterium)51,((((Bacillus,Bacillus)87,(Oceanobacillus,(Geobacillus,(Bacillus,(Bacillus,Bacillus)100)53)32)23)39,(Listeria,Listeria)100)23,((Propionibacterium,(Nocardia,(Mycobacterium,Mycobacterium)100)82)39,((Streptomyces,Streptomyces)100,(Corynebacterium,(Corynebacterium,Corynebacterium)36)100)28)97)1)2))1)30)27)12)12);
((Listeria,Listeria)100,((Mesorhizobium,Sinorhizobium)56,(Mycobacterium,Mycobacterium)100)100);
(Bacillus,((Vibrio,Vibrio)50,Vibrio));
(Shigella,((Chromobacterium,Salmonella)86,(Burcholderia,Burcholderia)100)100);
(Chromobacterium,((((Vibrio,Vibrio)42,Vibrio)43,Vibrio)100,Shewanella));
(Bacillus,(Rhodopseudomonas,(Silicibacter,(Agrobacterium,(Brucella,Brucella)100)53)90)90);
(Aeropyrum,(Bacillus,(Oceanobacillus,(Streptomyces,Streptomyces)100)80)80);
(Silicibacter,((((Erwinia,(Salmonella,(Escherichia,Shigella)100)100)57,(Yersinia,Yersinia)100)99,Mesorhizobium)42,Chromobacterium));
(Pseudomonas,(((Bordetella,(Bordetella,Bordetella)96)100,Nitrosomonas)44,(Burcholderia,Burcholderia)100)100);
(Dehalococcoides,(((((Aeropyrum,(Halobacterium,Haroarcula)97)53,(Methanobacterium,Methanopyrus)100)65,(Methanobacterium,Methanobacterium)99)99,Archhaeoglobus)57,(Methanosarcina,Methanosarcina)100)100);
((Nostos,((Synechosystis,Bradyrhizobium)79,(Pseudomonas,((Bordetella,Bordetella)35,Bordetella)100)100)78)100,(Bacillus,Bacillus));
((Burcholderia,Rhodopseudomonas)100,(Pirellula,Pirellula));
(Fusobacterium,(Clostridium,(Bacteroides,Bacteroides)100)100);
(Bacillus,((Pseudomonas,Mesorhizobium)70,Bradyrhizobium));
(((Bacillus,Bacillus)99,Staphylococcus)100,(Chromobacterium,(Streptomyces,Streptomyces)98)98);
(Chlorobium,(((Azoarcus,((Ralstonia,(Burcholderia,Burcholderia)100)99,(Bradyrhizobium,(Pseudomonas,Vibrio)48)24)30)50,(Mesorhizobium,Sinorhizobium)100)100,Legionella));
(Streptomyces,((Rhodopseudomonas,Bordetella)81,(Bradyrhizobium,(Burcholderia,Burcholderia)100)67)67);
(Chromobacterium,(Methylococcus,((((((Idiomarina,Shewanella)43,(Vibrio,(Vibrio,(Vibrio,Vibrio)99)100)100)38,((Haemophilus,(Mannheimia,Pasteurella)47)100,(Erwinia,(((Salmonella,(Escherichia,Shigella)98)100,(Yersinia,Yersinia)100)41,Photorhabdus)51)99)100)92,(Pseudomonas,(Pseudomonas,Pseudomonas)62)100)23,(Coxiella,Legionella)93)34,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)62)100)100)34)34);
(((Bacteroides,Bacteroides)98,Porphyromonas)100,(Pirellula,Pirellula));
((Bacillus,(Staphylococcus,(Bacillus,Bacillus)100)56)82,(Francizella,(Dehalococcoides,(Deinococcus,(Thermus,((Gluconobacter,Mesorhizobium)98,(Streptomyces,Streptomyces)100)38)15)59)63)63);
(((Xanthomonas,Xanthomonas)95,Xanthomonas)100,(Streptomyces,Streptomyces));
(Caulobacter,(Nitrosomonas,(Xanthomonas,Xanthomonas)100)100);
(Gloeobacter,((((Tropheryma,Leifsonia)85,((((Mycobacterium,(Mycobacterium,Mycobacterium)100)100,(Nocardia,(Corynebacterium,(Corynebacterium,Corynebacterium)100)100)39)97,(Streptomyces,Streptomyces)100)32,Propionibacterium)58)100,Thermosynechococcus)65,Deinococcus));
(Bifidobacterium,((Listeria,Listeria)100,Lactobacillus));
(((Oceanobacillus,(Bacillus,Bacillus)99)28,Bacillus)100,(Corynebacterium,Silicibacter));
(Pyrococcus,(Chlamydophila,(Chlamydophila,Chlamydophila)85)85);
(Rhodopseudomonas,(Vibrio,(Vibrio,(Vibrio,Vibrio)37)52)52);
(Aquifex,(Shewanella,(Vibrio,Vibrio)95)95);
((Porphyromonas,(Bacteroides,Bacteroides)100)100,((Shewanella,(Pirellula,Pirellula)100)55,(Gluconobacter,Zymomonas)100)100);
(Thermoanaerobacter,(Bacillus,((Staphylococcus,Staphylococcus)97,(Bacillus,(Geobacillus,(Bacillus,(Bacillus,Bacillus)100)52)53)12)27)27);
((((Bacillus,(Listeria,Listeria)100)64,Oceanobacillus)70,Enterococcus)100,(Streptomyces,Streptomyces));
(Fusobacterium,((((Vibrio,Vibrio)71,(Haemophilus,Pasteurella)98)81,Helicobacter)89,Gloeobacter));
(Bdellovibrio,((Nitrosomonas,Azoarcus)36,((Bordetella,(Bordetella,Bordetella)96)100,(Ralstonia,(Burcholderia,Burcholderia)100)100)80)80);
(((Rhodopseudomonas,Bradyrhizobium)100,Gluconobacter)74,((Xanthomonas,(Xanthomonas,Xanthomonas)85)100,((Sinorhizobium,Silicibacter)100,(Methylococcus,(Pseudomonas,(Acinetobacter,(Pseudomonas,Pseudomonas)100)43)84)100)69)69);
(Wolinella,((Bradyrhizobium,Pseudomonas)92,Azoarcus));
(Deinococcus,((Streptomyces,Streptomyces)100,Propionibacterium));
(Pyrococcus,((Escherichia,Methanosarcina)83,(((Sinorhizobium,Agrobacterium)69,(Mesorhizobium,Rhodopseudomonas)33)100,(Pirellula,Pirellula)100)91)91);
((((Agrobacterium,Mesorhizobium)100,((Sinorhizobium,Pseudomonas)36,Deinococcus)100)100,(Coxiella,Bdellovibrio)79)98,(Nocardia,(Streptomyces,Streptomyces)100)100);
(Fusobacterium,(Thermoanaerobacter,(Idiomarina,(Streptococcus,(Streptococcus,Streptococcus)51)94)27)27);
(Bacteroides,(((Pyrococcus,Pyrococcus)96,Pyrococcus)77,Sulforobus));
(((Bacillus,Bacillus)100,(Staphylococcus,Staphylococcus)100)36,(((Idiomarina,Deinococcus)73,((Helicobacter,Bacteroides)32,Desulfotalea)65)39,(Yersinia,Yersinia)100)100);
(Pseudomonas,((Burcholderia,Burcholderia)100,Chromobacterium));
(Burcholderia,(Pseudomonas,(Pseudomonas,Vibrio)100)100);
((((Bacillus,Bacillus)85,(Staphylococcus,Oceanobacillus)74)50,Bacillus)100,((Thermus,Deinococcus)98,(Pirellula,Pirellula)100)100);
((Lactobacillus,Enterococcus)48,((Lactobacillus,Lactobacillus)82,((Phytoplasma,(Mycoplasma,Listeria)56)63,(Streptococcus,Streptococcus)100)63)63);
(Bacteroides,(Mycobacterium,(Corynebacterium,Corynebacterium)96)96);
((((Pyrococcus,Pyrococcus)50,Pyrococcus)59,Thermococcus)100,(Synechosystis,((Desulfotalea,(Geobacter,Desulfovibrio)91)88,(Pyrobaculum,Aeropyrum)100)70)70);
(Pseudomonas,(Picrophilus,(Thermoplasma,Thermoplasma)100)100);
((((((Leifsonia,Tropheryma)99,(Streptomyces,Streptomyces)100)82,(Pirellula,Pirellula)100)96,((Corynebacterium,(Corynebacterium,Corynebacterium)100)100,(Mycobacterium,Nocardia)28)51)100,((((Bacillus,Bacillus)100,Listeria)77,(Staphylococcus,Staphylococcus)100)98,(Streptococcus,Streptococcus)100)100)100,(Picrophilus,(Thermoplasma,Thermoplasma)97)97);
(Methanosarcina,(Nocardia,(Mesorhizobium,Gloeobacter)91)91);
(Fusobacterium,(Bdellovibrio,(Vibrio,Vibrio)66)66);
(Bacillus,(((Chlamydophila,(Chlamydophila,Chlamydophila)100)100,Chlamydophila)100,Parachlamydia));
(Symbiobacterium,(((Bordetella,Bordetella)93,Bordetella)100,(Bacillus,Bacillus)100)100);
(Bacillus,((((Sinorhizobium,Rhodopseudomonas)56,Bradyrhizobium)36,(Pirellula,Pirellula)100)100,((Agrobacterium,Burcholderia)100,(Pseudomonas,(Idiomarina,Gloeobacter)100)68)89)89);
((Azoarcus,(Ralstonia,(Burcholderia,(Bordetella,Bordetella)99)60)68)44,(((Pseudomonas,(Xanthomonas,Xanthomonas)100)68,Methylococcus)60,(Vibrio,Vibrio)100)100);
(Bdellovibrio,((Azoarcus,Methylococcus)87,Shewanella));
(Bacteroides,(Desulfovibrio,(Pirellula,Pirellula)100)100);
(Pseudomonas,(Brucella,(Brucella,Brucella)49)49);
(Gloeobacter,((Streptomyces,Streptomyces)100,(Mycobacterium,Mycobacterium)100)100);
(Desulfotalea,(((Helicobacter,Helicobacter)71,Wolinella)80,Campylobacter));
(Francizella,((Chlamydophila,Chlamydophila)22,Chlamydophila));
(Sulforobus,((Legionella,Coxiella)90,Leptospira));
((Geobacter,Desulfovibrio)100,(Pirellula,Pirellula));
((((((Halobacterium,Haroarcula)99,Archhaeoglobus)28,(Methanosarcina,Methanosarcina)100)79,((Aeropyrum,(Sulforobus,Sulforobus)99)62,(Picrophilus,(Thermoplasma,Thermoplasma)100)100)30)13,((Methanobacterium,((Methanobacterium,Methanobacterium)95,Nanoarchaeum)37)12,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)55)100)100)3)15,(((Clostridium,(Clostridium,Clostridium)85)100,((Borrelia,Borrelia)100,(Treponema,Treponema)100)91)97,((((Nocardia,(Streptomyces,Streptomyces)100)97,(Parachlamydia,((Chlamydophila,(Chlamydophila,Chlamydophila)98)51,Chlamydophila)98)100)100,Bradyrhizobium)25,((((((Listeria,Listeria)100,(((((Staphylococcus,Staphylococcus)100,Bacillus)38,Oceanobacillus)33,((Lactobacillus,Lactobacillus)100,((Lactococcus,(((Streptococcus,(Streptococcus,Streptococcus)23)37,Streptococcus)48,Streptococcus)100)100,(Enterococcus,Lactobacillus)32)35)85)7,((Bacillus,Bacillus)100,(Geobacillus,(Bacillus,Bacillus)100)86)62)20)66,(Salmonella,(Escherichia,Shigella)100)100)78,Pseudomonas)35,(Gloeobacter,(((Thermosynechococcus,Synechosystis)47,Nostos)61,(Synechococcus,Prochlorococcus)51)75)95)49,(Porphyromonas,(Bacteroides,Bacteroides)100)100)25)10)10);
((Methanosarcina,Methanosarcina)100,((Bacillus,(Methanobacterium,Desulfotalea)96)60,((Bacillus,Bacillus)99,(Bacillus,Bacillus)100)66)66);
(Geobacter,(Francizella,(Gluconobacter,(Zymomonas,(((((Pseudomonas,(Pseudomonas,Pseudomonas)52)100,(Idiomarina,Acinetobacter)32)10,(Caulobacter,((Bartonella,(Brucella,(Brucella,Brucella)77)100)55,(((Rhodopseudomonas,Bradyrhizobium)94,Mesorhizobium)61,(Agrobacterium,Sinorhizobium)99)52)66)28)3,(Silicibacter,Methylococcus)7)1,(Shewanella,(((Vibrio,(Vibrio,(Vibrio,Vibrio)72)61)98,(Photorhabdus,((Erwinia,(Yersinia,Yersinia)100)77,(Salmonella,(Shigella,Escherichia)100)45)80)96)53,(Haemophilus,(Pasteurella,Mannheimia)74)100)44)43)9)6)71)71);
(Gluconobacter,((Vibrio,Vibrio)73,Vibrio));
((Gloeobacter,(Synechococcus,Prochlorococcus)100)100,(Caulobacter,(Gluconobacter,((Bradyrhizobium,Rhodopseudomonas)100,((Sinorhizobium,Agrobacterium)100,(Bartonella,(Bordetella,Bordetella)100)48)81)60)40)40);
(Bacillus,((((Sinorhizobium,Synechosystis)63,Chromobacterium)32,(Rhodopseudomonas,(Yersinia,Erwinia)100)98)38,(Bdellovibrio,(Burcholderia,Burcholderia)100)65)65);
(Clostridium,(((Bacteroides,Bacteroides)78,Porphyromonas)100,(Shewanella,Treponema)83)83);
(Bradyrhizobium,((Bordetella,Bordetella)42,Bordetella));
(Clostridium,(Caulobacter,(Photorhabdus,Desulfotalea)98)98);
(Leptospira,((Pseudomonas,Pseudomonas)67,Pseudomonas));
((((((Pirellula,Pirellula)100,Nocardia)65,(Chlorobium,(Bacteroides,Porphyromonas)57)68)55,Bdellovibrio)74,Rickettsia)100,(Methanosarcina,Methanosarcina));
(Aquifex,(((Shewanella,Vibrio)48,Vibrio)100,Bdellovibrio));
(Caulobacter,(Bifidobacterium,(Mycobacterium,Mycobacterium)100)100);
((((Methanobacterium,Methanobacterium)45,Methanobacterium)76,((Pyrococcus,Pyrococcus)92,(Thermococcus,Pyrococcus)90)100)80,(Wolinella,(Thermoanaerobacter,(Erwinia,(Escherichia,Salmonella)100)96)75)75);
((Brucella,(Brucella,Brucella)99)100,(Corynebacterium,Corynebacterium));
((((((((Streptococcus,Streptococcus)80,Lactococcus)24,(Streptococcus,Streptococcus)44)22,Streptococcus)97,Enterococcus)63,Lactobacillus)100,Thermoanaerobacter)88,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)51)100)100);
(Haroarcula,((Streptococcus,Pyrococcus)44,(Propionibacterium,(Bacillus,(Bacillus,Bacillus)100)100)100)100);
(Caulobacter,((Xanthomonas,Xanthomonas)90,Xanthomonas));
(Clostridium,(Bifidobacterium,(Staphylococcus,((Lactococcus,(((Streptococcus,Streptococcus)33,Streptococcus)23,(Streptococcus,Streptococcus)56)55)68,(Lactobacillus,(Lactobacillus,Lactobacillus)100)56)38)99)99);
(Clostridium,(((((Rhodopseudomonas,((Enterococcus,Lactobacillus)98,(Lactococcus,Streptococcus)96)68)33,(Parachlamydia,Pseudomonas)40)24,Francizella)80,(Mannheimia,Streptococcus)96)64,(Lactobacillus,Lactobacillus)100)100);
(Chlamydophila,((Parachlamydia,Leptospira)100,Chlamydophila));
((((Xanthomonas,Xanthomonas)33,Xanthomonas)76,Xylella)100,(Bradyrhizobium,(Brucella,(Brucella,Brucella)85)100)100);
(Methanosarcina,(Chlorobium,(Pirellula,Pirellula)100)100);
((Yersinia,Yersinia)100,(Burcholderia,Burcholderia));
((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)73)99)100,((Aquifex,(Methanobacterium,Methanobacterium)100)43,(Methanopyrus,((((Methanobacterium,Aeropyrum)45,(Sulforobus,Sulforobus)100)11,Pyrobaculum)20,(((Methanosarcina,Methanosarcina)100,Archhaeoglobus)31,(Halobacterium,((Nostos,Methylococcus)100,((Pseudomonas,(Ralstonia,(Escherichia,Shigella)100)87)59,(Pirellula,Pirellula)100)100)94)89)13)17)17)17);
(Burcholderia,(Pseudomonas,(Yersinia,Erwinia)100)100);
(Gloeobacter,((Sinorhizobium,Agrobacterium)100,((Bradyrhizobium,Rhodopseudomonas)100,(Campylobacter,(Yersinia,Yersinia)100)46)67)67);
(Bacillus,((Streptomyces,Streptomyces)92,Deinococcus));
(((Zymomonas,(Rhodopseudomonas,Bradyrhizobium)90)87,Mesorhizobium)65,(Erwinia,Methylococcus));
(Geobacillus,(Porphyromonas,(Desulfotalea,Shewanella)79)79);
((((Shigella,Escherichia)96,Salmonella)100,Haemophilus)100,(Streptococcus,Streptococcus));
(Caulobacter,((Legionella,Idiomarina)94,Xanthomonas));
(Thermoanaerobacter,(Staphylococcus,(Coxiella,((((((((((Yersinia,Yersinia)100,(Erwinia,(Salmonella,(Escherichia,Shigella)80)97)24)58,Photorhabdus)84,(Buchnera,(Blochmannia,Buchnera)51)77)47,(Pasteurella,(Mannheimia,Haemophilus)68)100)41,(Vibrio,(Vibrio,(Vibrio,Vibrio)96)73)100)18,(Idiomarina,Shewanella)53)12,(Pseudomonas,(Pseudomonas,Pseudomonas)51)100)3,Acinetobacter)22,(((Neisseria,Chromobacterium)97,Nitrosomonas)37,(Methylococcus,(Xanthomonas,Xanthomonas)100)55)6)75)76)76);
(Parachlamydia,(Pseudomonas,(((Vibrio,Vibrio)100,(Photorhabdus,Erwinia)98)62,(Pasteurella,Haemophilus)100)47)47);
(Desulfovibrio,(((Bradyrhizobium,Ralstonia)81,Erwinia)82,(Xanthomonas,Xanthomonas)100)100);
(((Xanthomonas,Xanthomonas)100,Caulobacter)100,(Pirellula,Pirellula));
(Acinetobacter,(Brucella,(Brucella,Brucella)65)65);
(Clostridium,(Streptococcus,((Streptococcus,Streptococcus)86,(Streptococcus,Streptococcus)66)71)71);
(Thermoanaerobacter,(((Wolinella,Helicobacter)49,Helicobacter)39,Campylobacter));
(Methanosarcina,((Fusobacterium,Treponema)56,Bacteroides));
(Nostos,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)90)44)44);
(Pyrobaculum,(Archhaeoglobus,((((Methanosarcina,Methanosarcina)100,(Methanobacterium,Methanobacterium)95)17,(Methanobacterium,((Pyrococcus,Pyrococcus)46,Pyrococcus)100)36)8,((Aeropyrum,(Sulforobus,Sulforobus)100)67,(((Halobacterium,Haroarcula)100,Methanopyrus)11,(Nanoarchaeum,(Picrophilus,(Thermoplasma,Thermoplasma)98)100)42)2)9)20)20);
((Streptomyces,Streptomyces)100,(Enterococcus,Streptococcus));
(Clostridium,((Clostridium,((Geobacillus,Symbiobacterium)42,Thermoanaerobacter)51)80,(Listeria,Listeria)100)100);
(Bradyrhizobium,((((Haemophilus,Pasteurella)78,Mannheimia)27,Neisseria)92,(Salmonella,(Escherichia,Shigella)83)100)100);
(((Rhodopseudomonas,Bradyrhizobium)80,Caulobacter)97,(Synechosystis,Gloeobacter));
(Clostridium,(((Bifidobacterium,Bacillus)54,Lactobacillus)32,(Enterococcus,(Lactococcus,(Bacillus,Bacillus)100)22)26)26);
(Desulfotalea,((Synechococcus,Prochlorococcus)92,(Gloeobacter,(Nostos,Synechosystis)100)71)71);
(Symbiobacterium,(Geobacillus,((Bacillus,(Bacillus,Bacillus)86)27,(Oceanobacillus,(Bacillus,Bacillus)100)73)52)52);
(((Desulfotalea,Streptomyces)62,Burcholderia)96,(Haroarcula,Halobacterium));
(Nostos,((((Vibrio,Vibrio)54,(Vibrio,Vibrio)99)100,Legionella)100,(Idiomarina,Desulfotalea)85)85);
((Pseudomonas,((Bdellovibrio,(Pseudomonas,Pseudomonas)100)43,Xanthomonas)42)100,(Mycobacterium,Mycobacterium));
(Clostridium,(Lactobacillus,(Listeria,Listeria)96)96);
((Clostridium,(Clostridium,Clostridium)81)85,((((((Staphylococcus,Staphylococcus)100,(Geobacillus,(Bacillus,Bacillus)79)78)33,(Bacillus,Bacillus)100)21,Oceanobacillus)34,((Listeria,Listeria)100,((((Lactobacillus,Lactobacillus)100,(Lactococcus,(Streptococcus,(((Streptococcus,Streptococcus)65,Streptococcus)45,Streptococcus)78)97)80)64,Enterococcus)54,Lactobacillus)98)60)72,(Tropheryma,(Thermus,Symbiobacterium)85)82)82);
(Streptomyces,((Desulfotalea,Shewanella)50,(Ralstonia,((Bradyrhizobium,(Rhodopseudomonas,((Brucella,Brucella)68,Brucella)100)50)98,(Bordetella,Bordetella)100)79)75)75);
(((Chromobacterium,Neisseria)57,Azoarcus)45,((((Coxiella,Methylococcus)25,((Pseudomonas,Pseudomonas)68,Pseudomonas)100)18,Acinetobacter)4,(((Idiomarina,Shewanella)70,((((Pasteurella,(Haemophilus,Mannheimia)57)100,(Erwinia,((Photorhabdus,(Yersinia,Yersinia)100)74,(Salmonella,(Escherichia,Shigella)100)94)39)98)67,(Vibrio,(Vibrio,(Vibrio,Vibrio)97)83)63)32,Blochmannia)31)54,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)55)73)100)21)21);
(Methanosarcina,(Photorhabdus,(Streptomyces,Shewanella)56)56);
(Bradyrhizobium,((((Xanthomonas,Xanthomonas)88,Xanthomonas)98,Xylella)100,Methylococcus));
((((((Bacillus,Bacillus)98,Geobacillus)63,(Bacillus,Bacillus)100)23,Bacillus)67,Oceanobacillus)89,(Symbiobacterium,(Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)76)100)100)100);
((Streptococcus,Streptococcus)81,(Treponema,(((Bacteroides,Lactobacillus)25,Lactobacillus)34,(Gluconobacter,Streptomyces)95)54)54);
(Gloeobacter,(Methylococcus,(Pirellula,Pirellula)100)100);
(Leptospira,((Methylococcus,Bdellovibrio)63,(Shewanella,Azoarcus)63)63);
(((Burcholderia,Burcholderia)100,(Chromobacterium,(Pseudomonas,(Pseudomonas,Pseudomonas)73)100)71)100,(Pirellula,Pirellula));
(Wolinella,((((Vibrio,Mannheimia)66,Photorhabdus)30,Erwinia)79,Vibrio));
(Agrobacterium,(Aeropyrum,(Sulforobus,Sulforobus)97)97);
(Clostridium,((Listeria,Listeria)100,Salmonella));
(Deinococcus,((Coxiella,Escherichia)55,((Agrobacterium,Sinorhizobium)84,(Silicibacter,(Mesorhizobium,(Brucella,(Brucella,Brucella)75)100)74)35)61)61);
(((Azoarcus,Pseudomonas)97,Sinorhizobium)100,(Haroarcula,Halobacterium));
(((Methanosarcina,Methanosarcina)100,Haroarcula)100,(Streptomyces,Streptomyces));
(Methanopyrus,((Haroarcula,Deinococcus)87,Thermus));
(Bdellovibrio,(Erwinia,(Nitrosomonas,(Sinorhizobium,Rhodopseudomonas)97)36)36);
(Gluconobacter,(Ralstonia,(Burcholderia,Burcholderia)100)100);
((((((((Bordetella,Bordetella)100,Pseudomonas)55,Bradyrhizobium)63,(Agrobacterium,Sinorhizobium)97)84,(((Erwinia,(Salmonella,(Escherichia,Shigella)100)79)72,(Yersinia,Yersinia)100)94,(Mannheimia,(Haemophilus,Pasteurella)63)68)75)27,((Vibrio,(Vibrio,Vibrio)40)36,Vibrio)98)58,Shewanella)100,(Campylobacter,(Wolinella,Helicobacter)60)60);
((Pirellula,Pirellula)100,(Bacillus,Bacillus));
(Streptomyces,(Synechosystis,(Thermosynechococcus,Nostos)100)100);
((((Pasteurella,Mannheimia)74,Neisseria)100,Acinetobacter)100,(Bacteroides,Bacteroides));
((Sinorhizobium,Zymomonas)84,((Ralstonia,Chromobacterium)99,(Xylella,(Xanthomonas,Xanthomonas)86)100)100);
(Gloeobacter,(Desulfotalea,(Burcholderia,Burcholderia)100)100);
((((Xanthomonas,Xanthomonas)48,Xanthomonas)100,Francizella)100,((Mycobacterium,(Mycobacterium,Mycobacterium)100)100,(Streptomyces,Streptomyces)100)100);
((Streptomyces,Streptomyces)100,(Shewanella,Pseudomonas));
((Ralstonia,Burcholderia)100,((Corynebacterium,Corynebacterium)100,(Mycobacterium,Mycobacterium)100)100);
(Sulforobus,((Listeria,Listeria)100,(Bacillus,(Pirellula,Pirellula)100)50)50);
(((Xanthomonas,Xanthomonas)85,Xanthomonas)100,(Burcholderia,Ralstonia));
((((Leifsonia,(Corynebacterium,(Corynebacterium,Corynebacterium)80)97)49,Bifidobacterium)98,Tropheryma)100,(Staphylococcus,Staphylococcus));
(Nostos,((((Shigella,Escherichia)57,Xanthomonas)87,Methylococcus)58,Bifidobacterium));
((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)70)80)100,(Rickettsia,((Silicibacter,Caulobacter)71,((Rhodopseudomonas,Bradyrhizobium)100,((((Brucella,Brucella)66,Brucella)100,(Mesorhizobium,(Agrobacterium,Sinorhizobium)89)43)29,(Bartonella,Bartonella)99)81)79)31)31);
((Mycobacterium,Mycobacterium)100,(Burcholderia,Burcholderia));
(Nocardia,((Lactococcus,((Streptococcus,(Streptococcus,(Streptococcus,Streptococcus)37)39)64,Streptococcus)100)82,((((Lactobacillus,(Lactobacillus,Lactobacillus)100)86,Enterococcus)87,(Staphylococcus,Staphylococcus)100)64,(Oceanobacillus,(Listeria,Listeria)100)69)55)55);
(Thermotoga,(Corynebacterium,(Pirellula,Pirellula)100)100);
(Enterococcus,((Mannheimia,Pasteurella)74,Haemophilus));
(Azoarcus,((((Photorhabdus,Erwinia)93,(Escherichia,Shigella)100)80,Salmonella)100,Pseudomonas));
(Pyrobaculum,(Aeropyrum,(Sulforobus,Sulforobus)100)100);
(Clostridium,(Pseudomonas,((Streptomyces,Streptomyces)100,(Deinococcus,(Thermosynechococcus,(Nostos,(Shigella,(Pirellula,Pirellula)100)100)60)100)99)90)90);
(Helicobacter,(Rhodopseudomonas,(Escherichia,Shigella)100)100);
(Picrophilus,(((((((Brucella,Brucella)84,Brucella)100,(Bartonella,Bartonella)100)93,Mesorhizobium)100,Bradyrhizobium)95,Nitrosomonas)100,(Nocardia,Streptomyces)100)100);
(Archhaeoglobus,((Chlamydophila,(Thermus,Deinococcus)98)36,((Aquifex,((Symbiobacterium,Bacillus)58,Geobacter)22)9,(Desulfovibrio,((Streptomyces,Streptomyces)100,(Pirellula,Pirellula)100)25)20)71)71);
(Chromobacterium,(Photorhabdus,(Salmonella,Erwinia)61)61);
((Nostos,Gloeobacter)100,((Streptomyces,Xanthomonas)48,(Coxiella,(Prochlorococcus,(Campylobacter,Leptospira)82)67)85)85);
(Methanosarcina,((Nocardia,Streptomyces)100,(Nostos,(Bacillus,Bacillus)98)45)45);
(Methanobacterium,((Silicibacter,((Mesorhizobium,Sinorhizobium)94,Rhodopseudomonas)36)98,Xylella));
((((((Propionibacterium,(Nocardia,(Mycobacterium,Mycobacterium)100)62)64,(Streptomyces,Streptomyces)100)99,(Deinococcus,Thermus)90)43,Bacillus)68,Desulfotalea)100,(Halobacterium,Haroarcula));
(((((((Brucella,Brucella)67,Brucella)99,(Bartonella,Bartonella)100)45,Gluconobacter)63,Methylococcus)61,Zymomonas)100,(Pirellula,Pirellula));
(Mycoplasma,((Rickettsia,Rickettsia)35,Rickettsia));
(Desulfotalea,(Ralstonia,(Shewanella,(Azoarcus,Methylococcus)70)58)58);
(Sinorhizobium,((Salmonella,(Shigella,Escherichia)100)100,(Erwinia,(Photorhabdus,(Yersinia,Yersinia)100)75)41)41);
(((((Pseudomonas,Pseudomonas)83,Pseudomonas)95,Methylococcus)55,Shewanella)100,(Mesorhizobium,(Brucella,(Brucella,Brucella)100)100)100);
(Acinetobacter,(Chromobacterium,(Pseudomonas,(Burcholderia,Burcholderia)100)87)87);
(Nostos,(Rhodopseudomonas,(Nocardia,Mycobacterium)100)100);
(Nostos,((Caulobacter,Nocardia)100,(Corynebacterium,Corynebacterium)100)100);
(Bacillus,(((Gloeobacter,Nostos)98,Thermosynechococcus)100,Methylococcus));
((Prochlorococcus,Synechococcus)100,(Streptomyces,Streptomyces));
(Nocardia,((Ralstonia,Bradyrhizobium)92,(Sinorhizobium,Agrobacterium)100)100);
((((Sinorhizobium,Agrobacterium)100,(Bartonella,Bartonella)100)41,(Mesorhizobium,(Bradyrhizobium,Rhodopseudomonas)100)33)97,(Legionella,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)100)71)100)100);
(Pyrobaculum,((Methanopyrus,(Methanobacterium,Methanobacterium)83)74,(Sulforobus,Aeropyrum)90)90);
(((Bordetella,Bordetella)92,Bordetella)100,((Salmonella,Photorhabdus)100,(Pseudomonas,Pseudomonas)100)100);
(((((Geobacter,(Streptomyces,Streptomyces)90)69,Bradyrhizobium)31,Mesorhizobium)45,Azoarcus)100,(Methanosarcina,Methanosarcina));
(Bacillus,((Thermus,Deinococcus)97,(Geobacter,(Chromobacterium,(Xanthomonas,Xanthomonas)100)62)97)97);
(Sinorhizobium,(((((Bordetella,Bordetella)63,Bordetella)100,(Caulobacter,Pseudomonas)100)45,Photorhabdus)100,Burcholderia));
(Staphylococcus,(Staphylococcus,(Listeria,((Enterococcus,(Streptococcus,Streptococcus)96)42,(Mycoplasma,Mycoplasma)100)38)100)100);
(Burcholderia,(Nocardia,(Streptomyces,Streptomyces)100)100);
(Chlorobium,((Geobacter,Propionibacterium)54,(((Pseudomonas,Pseudomonas)100,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)95)100)100)100,((Idiomarina,(Shewanella,(Vibrio,(Vibrio,(Vibrio,Vibrio)91)100)100)83)35,((Pseudomonas,(((Acinetobacter,Chromobacterium)100,Azoarcus)77,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)100)100,((Neisseria,((Corynebacterium,(Corynebacterium,Corynebacterium)100)100,(Streptomyces,Streptomyces)100)100)48,((Francizella,(Pirellula,Pirellula)100)84,(Silicibacter,(Campylobacter,Helicobacter)100)69)62)18)19)24)61)61);
(Fusobacterium,((Leptospira,(Desulfovibrio,Idiomarina)40)47,Coxiella));
(Desulfotalea,(((Shigella,Escherichia)100,Salmonella)100,Acinetobacter));
(((Clostridium,Clostridium)53,Clostridium)100,(Geobacillus,(Oceanobacillus,(Bacillus,Bacillus)97)99)99);
((((((Caulobacter,Zymomonas)53,Nitrosomonas)53,Gluconobacter)84,((Treponema,Chlorobium)29,(Pirellula,Pirellula)100)42)71,Photorhabdus)100,(Porphyromonas,(Bacteroides,Bacteroides)99)99);
(((Desulfovibrio,Geobacter)92,Azoarcus)100,(Methanosarcina,Methanosarcina));
((Pirellula,Pirellula)100,((((Vibrio,Vibrio)91,Vibrio)97,Vibrio)100,(Burcholderia,Burcholderia)100)100);
(Clostridium,(Lactococcus,(Streptococcus,(Streptococcus,Streptococcus)82)100)100);
((((Sinorhizobium,Agrobacterium)96,Silicibacter)100,Brucella)100,(Burcholderia,Burcholderia));
(Thermotoga,(((Clostridium,Clostridium)88,Lactococcus)96,(Fusobacterium,(Streptococcus,Streptococcus)100)100)100);
(Desulfotalea,(Treponema,(Leptospira,(Borrelia,Borrelia)100)59)59);
((Nanoarchaeum,Halobacterium)37,(Phytoplasma,(Bdellovibrio,(Caulobacter,(Wigglesworthia,(Buchnera,Blochmannia)45)100)69)56)56);
(((((Xanthomonas,Xanthomonas)58,Xanthomonas)69,Xylella)100,Gluconobacter)100,(Streptomyces,Streptomyces));
(Agrobacterium,(((Pseudomonas,(Chromobacterium,Pseudomonas)95)31,Ralstonia)99,(Vibrio,Vibrio)100)100);
(Fusobacterium,(Clostridium,(Treponema,Streptococcus)31)31);
(Porphyromonas,((Brucella,Brucella)17,Brucella));
(Corynebacterium,((((((Salmonella,Erwinia)80,Photorhabdus)99,Vibrio)61,(Haemophilus,Mannheimia)94)74,Vibrio)68,Francizella));
((((((Shigella,Escherichia)100,(Erwinia,(Yersinia,Yersinia)100)54)62,Mannheimia)100,Oceanobacillus)60,(Bacteroides,Lactobacillus)82)83,(Enterococcus,(Listeria,Listeria)100)100);
((Mesorhizobium,Sinorhizobium)100,(((Nostos,Synechosystis)47,Thermosynechococcus)97,(Prochlorococcus,Synechococcus)100)100);
(Mesorhizobium,(Methylococcus,(Pseudomonas,(Pasteurella,(Salmonella,(Erwinia,(Yersinia,Yersinia)100)99)100)61)94)94);
(Clostridium,(((Geobacillus,((Bacillus,Bacillus)85,((Bacillus,Bacillus)100,Bacillus)35)73)100,(Propionibacterium,(Oceanobacillus,(((Listeria,Listeria)100,(Staphylococcus,Staphylococcus)100)63,Helicobacter)37)93)94)69,((((((((Shewanella,(Vibrio,(Vibrio,(Vibrio,Vibrio)37)44)90)79,((Photorhabdus,(Salmonella,(Escherichia,Shigella)100)75)64,(Erwinia,(Yersinia,Yersinia)100)87)98)50,Neisseria)55,(Pasteurella,(Haemophilus,Mannheimia)91)73)68,Campylobacter)64,Wolinella)34,Helicobacter)100,(Deinococcus,((Enterococcus,(Lactococcus,((Streptococcus,((Streptococcus,Streptococcus)100,(Streptococcus,Streptococcus)40)45)88,((Lactobacillus,Lactobacillus)70,(Bifidobacterium,Lactobacillus)48)74)72)100)46,(Thermus,(Desulfotalea,((Clostridium,Porphyromonas)41,(Borrelia,Borrelia)100)42)100)46)53)70)34)34);
(Caulobacter,((((((Streptococcus,(Streptococcus,Streptococcus)47)22,Streptococcus)40,Streptococcus)95,Lactococcus)100,Enterococcus)98,(Bacillus,Bacillus)100)100);
(Leptospira,(((Xanthomonas,Xanthomonas)100,Acinetobacter)100,(Pirellula,Pirellula)100)100);
(Clostridium,((Caulobacter,Vibrio)50,Bacteroides));
(Aquifex,(Leptospira,((((((Fusobacterium,(((Propionibacterium,(Leifsonia,(Streptomyces,Streptomyces)100)40)26,(Tropheryma,((Corynebacterium,(Corynebacterium,Corynebacterium)57)100,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)98)66)97)17)24,Bifidobacterium)86)12,((Symbiobacterium,(((((((Bacillus,Bacillus)100,((Listeria,Listeria)100,Oceanobacillus)42)10,(Bacillus,Bacillus)97)26,Bacillus)43,Geobacillus)48,((Staphylococcus,Staphylococcus)100,(((Lactobacillus,Lactobacillus)100,(Lactobacillus,Enterococcus)45)53,(Lactococcus,(Streptococcus,(Streptococcus,((Streptococcus,Streptococcus)36,Streptococcus)38)44)100)100)99)34)97,((Clostridium,(Clostridium,Clostridium)44)100,Chlorobium)34)35)26,Thermoanaerobacter)46)2,((Thermosynechococcus,((Prochlorococcus,Synechococcus)100,(Nostos,Synechosystis)37)49)82,Gloeobacter)93),(((Porphyromonas,(Bacteroides,Bacteroides)100)100,Bdellovibrio)10,Deinococcus)8)1,(Geobacter,(Dehalococcoides,(Pirellula,Pirellula)100)49)16)4,((Treponema,Treponema)98,(Thermus,((((Rickettsia,(Rickettsia,Rickettsia)95)100,((Wolbachia,Wolbachia)100,(Anaplasma,Ehrlichia)92)98)84,(((Zymomonas,(Caulobacter,Silicibacter)53)20,((Bradyrhizobium,Rhodopseudomonas)100,((Mesorhizobium,(Agrobacterium,Sinorhizobium)99)67,((Bartonella,Bartonella)100,(Brucella,(Brucella,Brucella)86)100)47)97)66)46,Gluconobacter)65)98,((Acinetobacter,(((Legionella,Coxiella)29,(((Methylococcus,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)71)79)100)77,(Idiomarina,(Shewanella,((Pasteurella,(Mannheimia,Haemophilus)65)100,((Vibrio,(Vibrio,(Vibrio,Vibrio)34)83)99,(Erwinia,((Salmonella,(Escherichia,Shigella)100)83,(Photorhabdus,(Yersinia,Yersinia)100)47)46)69)73)77)37)50)24,(Pseudomonas,(Pseudomonas,Pseudomonas)88)100)29)28,((((Bordetella,(Bordetella,Bordetella)93)100,(Burcholderia,Burcholderia)100)63,((Neisseria,Chromobacterium)88,Azoarcus)46)15,Ralstonia)98)28)55,(((Campylobacter,(Wolinella,(Helicobacter,Helicobacter)83)84)100,(((Mycoplasma,((Mycoplasma,Ureaplasma)40,Mycoplasma)66)52,(Mycoplasma,(Mycoplasma,Mycoplasma)52)71)81,Francizella)22)27,(Desulfovibrio,(Parachlamydia,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)96)68)100)99)21)23)24)18)16)5)21)21);
(Azoarcus,((Xanthomonas,Xanthomonas)100,(Salmonella,(Pseudomonas,Pseudomonas)95)100)100);
(Pyrobaculum,((Aeropyrum,Sulforobus)79,Sulforobus));
(Nocardia,((Mesorhizobium,Bradyrhizobium)56,Silicibacter));
(Nostos,((Vibrio,Francizella)98,Caulobacter));
(Mycoplasma,(Caulobacter,(Chlamydophila,Chlamydophila)64)64);
(Bacteroides,((((Xanthomonas,Xanthomonas)100,Xanthomonas)100,Chromobacterium)100,Leptospira));
(Mesorhizobium,(((Xanthomonas,Xanthomonas)67,Xanthomonas)99,Xylella));
(Lactobacillus,(((Nostos,Thermosynechococcus)92,(Prochlorococcus,Synechococcus)83)100,Parachlamydia));
(Gluconobacter,(Xanthomonas,(Xanthomonas,Xanthomonas)91)91);
(((Burcholderia,Symbiobacterium)98,Bradyrhizobium)100,(Methanosarcina,Methanobacterium));
(Clostridium,(((Bacillus,Staphylococcus)38,Bacillus)58,(Bacillus,Bacillus)100)100);
(Fusobacterium,(Treponema,(Enterococcus,Lactococcus)100)100);
(Clostridium,((Geobacter,(Campylobacter,Desulfovibrio)88)100,(Streptomyces,(Agrobacterium,(Brucella,Brucella)100)100)80)80);
(Clostridium,(Deinococcus,((Pirellula,Pirellula)100,((Streptomyces,Pseudomonas)55,(Mycobacterium,Mycobacterium)100)77)35)35);
(Streptococcus,((Pseudomonas,Vibrio)77,((Neisseria,Rhodopseudomonas)96,((Bartonella,(Agrobacterium,((Brucella,Brucella)72,Brucella)100)67)50,(Erwinia,(Yersinia,Yersinia)100)100)52)67)67);
(Caulobacter,((Xanthomonas,Xanthomonas)84,Xanthomonas));
(Haroarcula,((Burcholderia,Azoarcus)86,(Neisseria,Nitrosomonas)90)90);
(Fusobacterium,(Mycoplasma,(((((((((((((Acinetobacter,((Mannheimia,(Haemophilus,Pasteurella)77)100,((Photorhabdus,(Yersinia,Yersinia)100)91,(Erwinia,Salmonella)45)91)50)69,Idiomarina)21,(Shewanella,(Vibrio,(Vibrio,(Vibrio,Vibrio)100)67)78)37)36,(Pseudomonas,(Pseudomonas,Pseudomonas)94)100)46,((Azoarcus,(Burcholderia,Ralstonia)63)58,(Chromobacterium,Neisseria)47)83)78,Caulobacter)65,Clostridium)44,(Desulfotalea,Legionella)42)25,Francizella)39,Rickettsia)38,(Porphyromonas,(Bacteroides,Bacteroides)100)100)50,(Lactobacillus,(Lactobacillus,Lactobacillus)95)100)87,(Mycoplasma,(Streptococcus,(Streptococcus,(Streptococcus,Streptococcus)100)50)100)68)65)65);
((Mycoplasma,((Mycoplasma,Mycoplasma)100,(Mycoplasma,(Ureaplasma,Mycoplasma)54)26)61)100,(Treponema,(Silicibacter,Sinorhizobium)100)100);
(Photorhabdus,((Methanobacterium,Methanobacterium)100,Thermoplasma));
(Corynebacterium,((((Pseudomonas,Pseudomonas)89,Pseudomonas)98,Chromobacterium)99,(Bordetella,Bordetella)100)100);
(Thermotoga,((Clostridium,Clostridium)99,((((Enterococcus,(Lactobacillus,(Streptococcus,(Streptococcus,Streptococcus)99)61)64)95,((Listeria,Listeria)100,(Bacillus,((Bacillus,Bacillus)100,(Geobacillus,(Bacillus,Bacillus)100)49)81)68)99)52,Thermoanaerobacter)32,(Fusobacterium,(Streptococcus,Streptococcus)100)60)74)74);
((Geobacter,Desulfovibrio)53,(((Vibrio,Vibrio)100,(Bordetella,Methylococcus)28)19,(Photorhabdus,(Buchnera,Buchnera)100)38)38);
(Nostos,((((Xanthomonas,Xanthomonas)82,Xanthomonas)100,Geobacter)57,Leifsonia));
(Bacillus,(((Helicobacter,Helicobacter)100,Wolinella)100,Campylobacter));
(Nocardia,(Bdellovibrio,((((Chromobacterium,((((Salmonella,(Escherichia,Shigella)100)100,(Erwinia,(Yersinia,Yersinia)100)75)100,Shewanella)44,((Xanthomonas,(Xanthomonas,Xanthomonas)83)100,((((Burcholderia,Burcholderia)100,Azoarcus)42,(Bordetella,Bordetella)100)43,(Ralstonia,Acinetobacter)13)19)13)31)81,(Desulfotalea,(Vibrio,(Vibrio,Vibrio)89)79)100)83,Geobacter)53,(Idiomarina,(Pseudomonas,(Pseudomonas,Pseudomonas)100)95)87)99)99);
(Nocardia,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)99)69)69);
(Fusobacterium,(Photorhabdus,(Mycoplasma,Mycoplasma)100)100);
((Thermococcus,(Pyrococcus,Pyrococcus)49)72,(Mesorhizobium,Desulfovibrio));
(Bradyrhizobium,(Pseudomonas,((Pseudomonas,Acinetobacter)55,(Burcholderia,Burcholderia)100)63)63);
(Symbiobacterium,((Bacillus,(Bacillus,Bacillus)92)27,(Bacillus,Bacillus)100)100);
(Helicobacter,(((Pasteurella,Mannheimia)66,Haemophilus)90,(Silicibacter,Pseudomonas)64)64);
((Pseudomonas,Xanthomonas)100,(Brucella,Brucella));
(((Bacillus,Bacillus)100,Bacillus)97,(Prochlorococcus,Deinococcus));
(Aquifex,((Fusobacterium,((Oceanobacillus,(Bacillus,Bacillus)100)57,(Bacillus,((Listeria,Listeria)100,((Lactococcus,((Lactobacillus,Lactobacillus)100,Lactobacillus)48)82,(Enterococcus,(Streptococcus,(((Streptococcus,Streptococcus)80,Streptococcus)20,Streptococcus)25)100)74)97)79)24)100)85,(((((Thermosynechococcus,Nostos)100,(Synechosystis,(Prochlorococcus,Synechococcus)100)37)77,Gloeobacter)99,Symbiobacterium)25,(Geobacter,(Desulfovibrio,(Desulfotalea,(((((((((((Escherichia,Shigella)94,((Photorhabdus,(Yersinia,Yersinia)100)86,((Buchnera,Buchnera)100,(Blochmannia,Wigglesworthia)93)99)19)8,(Erwinia,Salmonella)67)13,(Mannheimia,(Haemophilus,Pasteurella)58)99)29,(Vibrio,(Vibrio,(Vibrio,Vibrio)96)99)69)64,(Idiomarina,Shewanella)98)72,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)100)80)100)26,((Francizella,(Legionella,Coxiella)37)56,Methylococcus)62)26,(Acinetobacter,((Pseudomonas,Pseudomonas)87,Pseudomonas)96)100)76,((Azoarcus,(Chromobacterium,Neisseria)19)27,((Nitrosomonas,(Ralstonia,(Burcholderia,Burcholderia)100)92)79,((Bordetella,Bordetella)65,Bordetella)100)89)100)93,((Thermotoga,(Campylobacter,(Helicobacter,(Helicobacter,Wolinella)42)99)100)36,(((((Silicibacter,Gluconobacter)62,(((((Bartonella,Bartonella)100,(Brucella,(Brucella,Brucella)81)100)77,(Agrobacterium,Sinorhizobium)87)76,Mesorhizobium)65,(Rhodopseudomonas,Bradyrhizobium)100)86)79,Caulobacter)25,Zymomonas)46,((Rickettsia,(Rickettsia,Rickettsia)98)100,((Anaplasma,Ehrlichia)76,(Wolbachia,Wolbachia)98)100)58)77)27)28)41)24)37)24)24);
(((Mesorhizobium,Rhodopseudomonas)100,Gluconobacter)100,(Pirellula,Pirellula));
(Azoarcus,((Shewanella,Idiomarina)100,(Xanthomonas,Xanthomonas)100)100);
(Symbiobacterium,((Bacillus,Bacillus)100,Streptococcus));
(Clostridium,((((Enterococcus,((Bacillus,Bacillus)100,(Bacillus,Bacillus)91)91)75,(Erwinia,Staphylococcus)46)29,Lactococcus)24,(Streptococcus,Streptococcus)100)100);
(Treponema,(Corynebacterium,(Zymomonas,(Ralstonia,(Pseudomonas,(Burcholderia,Burcholderia)100)37)39)95)95);
((Geobacillus,(Oceanobacillus,Bacillus)67)47,(((((Sinorhizobium,((Brucella,Brucella)64,Brucella)100)51,Mesorhizobium)73,Silicibacter)43,(Xanthomonas,Xanthomonas)93)53,((Nocardia,(Streptomyces,Streptomyces)99)98,(Mycobacterium,Mycobacterium)100)93)93);
((Sinorhizobium,(Mesorhizobium,Bradyrhizobium)95)69,(Vibrio,(Xanthomonas,Xanthomonas)99)99);
(Chlorobium,(Erwinia,((Wolinella,Bordetella)65,(Nitrosomonas,Desulfotalea)88)46)46);
(Chromobacterium,(Vibrio,(Vibrio,Vibrio)100)100);
(Streptomyces,(Erwinia,(Yersinia,Yersinia)100)100);
(Bdellovibrio,(Bradyrhizobium,(Rhodopseudomonas,(Sinorhizobium,Mesorhizobium)48)34)34);
(Helicobacter,((Mannheimia,Pasteurella)47,Vibrio));
(Chromobacterium,((Pseudomonas,Pseudomonas)100,((((((Salmonella,(Shigella,Escherichia)100)100,Erwinia)60,((Yersinia,Yersinia)100,Photorhabdus)65)82,(Wigglesworthia,Blochmannia)93)100,(Mannheimia,(Pasteurella,Haemophilus)75)100)97,(Shewanella,(Vibrio,(Vibrio,(Vibrio,Vibrio)100)99)100)72)80)80);
(Haroarcula,(Oceanobacillus,((Bacillus,Bacillus)97,(Bacillus,Bacillus)100)89)89);
(Legionella,((((((Brucella,Brucella)62,Brucella)100,(Sinorhizobium,Agrobacterium)94)82,Mesorhizobium)83,Rhodopseudomonas)100,(Rickettsia,(Rickettsia,Rickettsia)76)79)79);
(Bradyrhizobium,((((Vibrio,Vibrio)74,Vibrio)100,Vibrio)100,Shewanella));
(((Bacteroides,Bacteroides)100,(Nocardia,(Nostos,((Neisseria,Chlorobium)52,Xanthomonas)39)36)47)71,(Bacillus,(Bacillus,(((Staphylococcus,Staphylococcus)100,Oceanobacillus)40,(Bacillus,Bacillus)100)64)97)97);
(Chromobacterium,(Idiomarina,(Pseudomonas,Pseudomonas)99)99);
(Fusobacterium,((Clostridium,(Clostridium,Clostridium)55)91,(((((((((Bacillus,Bacillus)97,(Bacillus,Bacillus)100)34,Geobacillus)57,(Listeria,Listeria)100)43,Bacillus)43,(Oceanobacillus,(Staphylococcus,Staphylococcus)100)50)24,(Lactobacillus,((Lactobacillus,Lactobacillus)100,(Lactococcus,(Streptococcus,(Streptococcus,(Streptococcus,(Streptococcus,Streptococcus)24)46)77)74)98)49)46)9,Enterococcus)34,((Mycoplasma,(((Mycoplasma,Mycoplasma)100,(Mycoplasma,Mycoplasma)31)26,Ureaplasma)47)100,(Borrelia,Borrelia)100)39)81)81);
((((Bordetella,Bordetella)66,Bordetella)100,(Burcholderia,Burcholderia)100)100,(Streptomyces,Streptomyces));
(Sinorhizobium,(Bordetella,(Xanthomonas,(Vibrio,Mannheimia)100)81)81);
(Clostridium,(Enterococcus,((Streptococcus,Streptococcus)99,(Lactobacillus,Streptococcus)100)89)89);
(Thermus,(((Burcholderia,Burcholderia)99,Ralstonia)75,Shewanella));
(((Haroarcula,Halobacterium)100,Methanopyrus)20,((Thermoanaerobacter,(Methanobacterium,Methanobacterium)100)21,(((Methanobacterium,Dehalococcoides)28,(Chlorobium,(Methanosarcina,Methanosarcina)100)61)1,(((((((Gluconobacter,(Leptospira,(Pirellula,Pirellula)100)85)10,(((Zymomonas,(Bradyrhizobium,Rhodopseudomonas)100)46,(Silicibacter,(((Brucella,Brucella)51,Brucella)100,(Mesorhizobium,(Sinorhizobium,Agrobacterium)99)66)95)65)26,Caulobacter)18)4,((((Propionibacterium,Bifidobacterium)75,Leifsonia)91,((Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)98)93,(Corynebacterium,(Corynebacterium,Corynebacterium)100)99)72)77,(Streptomyces,Streptomyces)100)91),Symbiobacterium),((Methylococcus,((Nitrosomonas,(Chromobacterium,Neisseria)60)25,(((((Bordetella,Bordetella)45,Bordetella)100,Acinetobacter)21,(Azoarcus,(Ralstonia,(Burcholderia,Burcholderia)100)91)51)9,(Pseudomonas,(Pseudomonas,Pseudomonas)92)100)12)34)100,((Synechococcus,((Thermosynechococcus,(Synechosystis,Nostos)50)77,Gloeobacter)45)45,Prochlorococcus)100)79),(((((Lactococcus,(Desulfotalea,(Staphylococcus,Staphylococcus)100)49)24,(Oceanobacillus,(Helicobacter,Wolinella)100)21)6,(Clostridium,((Bacillus,Bacillus)100,((Listeria,Listeria)100,(Streptococcus,Lactobacillus)40)41)96)73)1,Aquifex)1,(Geobacter,(Desulfovibrio,(Geobacillus,(Bacillus,(Bacillus,Bacillus)93)61)100)13)5)1)1,(((Deinococcus,Thermus)100,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)56)100)100)31,((Sulforobus,Sulforobus)100,((Archhaeoglobus,Pyrobaculum)88,(Thermotoga,(Picrophilus,(Thermococcus,Pyrococcus)96)98)51)32)76)5)2)1)1);
((Bradyrhizobium,Mesorhizobium)75,(Ralstonia,(Burcholderia,Burcholderia)100)100);
(Bdellovibrio,((Bacteroides,Bacteroides)39,Chlorobium));
((Pseudomonas,(Pseudomonas,Pseudomonas)96)100,(Burcholderia,Burcholderia));
(Corynebacterium,((Methanosarcina,Methanosarcina)100,Sulforobus));
(Caulobacter,((Burcholderia,Burcholderia)100,Ralstonia));
(Propionibacterium,((Yersinia,(Escherichia,Salmonella)96)100,Vibrio));
((Silicibacter,Sinorhizobium)100,(Mycobacterium,Mycobacterium));
(Nocardia,((Xanthomonas,Pseudomonas)85,Rhodopseudomonas));
(Propionibacterium,((Salmonella,Escherichia)100,Vibrio));
(((((((Pseudomonas,Pseudomonas)92,Pseudomonas)100,(Bordetella,(Bordetella,Bordetella)87)100)91,(Ralstonia,Erwinia)86)100,(Corynebacterium,Caulobacter)98)85,Thermus)100,(Pyrococcus,(Thermococcus,Pyrococcus)96)96);
(Dehalococcoides,(Azoarcus,(Mesorhizobium,(Streptomyces,Streptomyces)100)80)80);
((((((((Oceanobacillus,(Bacillus,Bacillus)55)31,(Bacillus,Bacillus)100)49,Bacillus)63,(Staphylococcus,(Listeria,Listeria)100)98)33,Geobacillus)100,Symbiobacterium)58,Azoarcus)100,(Haroarcula,Halobacterium));
((Treponema,Thermosynechococcus)100,(Bacillus,Bacillus));
((Synechococcus,Prochlorococcus)85,(Idiomarina,(Francizella,(Neisseria,(Acinetobacter,Pseudomonas)100)88)74)74);
(Nostos,(((Vibrio,Vibrio)52,(Vibrio,Vibrio)74)100,Streptomyces));
(Pyrobaculum,(Methanopyrus,(Archhaeoglobus,(Methanobacterium,Methanobacterium)100)85)85);
(((((Silicibacter,(Rhodopseudomonas,Bradyrhizobium)100)71,Caulobacter)66,(Mesorhizobium,(Brucella,(Brucella,Brucella)76)100)97)47,(Sinorhizobium,Agrobacterium)88)100,((Ralstonia,(Burcholderia,Burcholderia)100)99,(Bordetella,(Bordetella,Bordetella)69)100)100);
(Clostridium,((Francizella,Gloeobacter)53,Mesorhizobium));
(Bdellovibrio,(((((Azoarcus,(Neisseria,Chromobacterium)84)56,(Ralstonia,(Burcholderia,Burcholderia)100)100)82,Nitrosomonas)90,(Coxiella,Legionella)94)100,((Ehrlichia,Anaplasma)94,(Wolbachia,Wolbachia)100)100)100);
(Sinorhizobium,(((Mycobacterium,Mycobacterium)100,(Streptomyces,Streptomyces)100)100,Thermus));
((((Xanthomonas,Xanthomonas)99,Xanthomonas)97,Acinetobacter)97,(Leifsonia,Nocardia));
(Aquifex,(Leptospira,(Fusobacterium,((((((((Bartonella,Bartonella)100,((Brucella,Brucella)95,Brucella)100)92,(Mesorhizobium,(Agrobacterium,Sinorhizobium)100)61)96,(Rhodopseudomonas,Bradyrhizobium)100)54,((Silicibacter,Caulobacter)56,Gluconobacter)43)56,(Rickettsia,(Rickettsia,Rickettsia)100)100)92,(Desulfovibrio,Desulfotalea)29)30,(Pirellula,Pirellula)100)81)58)58);
(Rhodopseudomonas,(Treponema,(Borrelia,Borrelia)100)100);
(Acinetobacter,((Silicibacter,Agrobacterium)32,Sinorhizobium));
((((((Shigella,Escherichia)100,Salmonella)99,Erwinia)98,(Photorhabdus,(Yersinia,Yersinia)100)98)100,Legionella)100,(Bordetella,(Bordetella,Bordetella)93)93);
(Clostridium,((Mesorhizobium,Listeria)44,(Pirellula,Pirellula)100)100);
((((Chlamydophila,(Chlamydophila,Chlamydophila)98)90,Chlamydophila)95,Leptospira)100,(Bordetella,Bordetella));
(Aquifex,(Campylobacter,(Helicobacter,(Helicobacter,Wolinella)92)62)62);
(Sulforobus,((Porphyromonas,(Shigella,(Salmonella,(Yersinia,Yersinia)100)100)78)51,(Bacteroides,Bacteroides)100)100);
(Fusobacterium,(Treponema,(Mannheimia,((((Vibrio,(Erwinia,Bacillus)58)18,(Bacteroides,(Listeria,Listeria)88)10)30,Bacillus)20,(Bacillus,(Bacillus,Bacillus)99)44)92)96)96);
(Helicobacter,(Acinetobacter,(((Ralstonia,Azoarcus)68,Nitrosomonas)98,(Chromobacterium,(Pseudomonas,Pseudomonas)100)96)97)97);
((((((Bacillus,(Bacillus,Bacillus)100)100,((Mycoplasma,Mycoplasma)62,(Mycoplasma,(Mycoplasma,Mycoplasma)62)97)59)100,Thermotoga)100,Dehalococcoides)87,Thermoanaerobacter)99,(((Picrophilus,Sulforobus)93,(Pyrococcus,Pyrococcus)100)96,(Halobacterium,Haroarcula)100)100);
(Clostridium,((Bacillus,Bacillus)61,(Streptococcus,Symbiobacterium)72)72);
(Staphylococcus,((((((Escherichia,Shigella)100,Salmonella)100,(Erwinia,(Yersinia,Yersinia)100)99)100,Vibrio)100,Gluconobacter)87,(Pirellula,Pirellula)100)100);
(Aquifex,((Vibrio,Parachlamydia)75,Thermotoga));
(Methanobacterium,(((Lactobacillus,Lactobacillus)100,Nostos)100,Streptomyces));
(Geobacter,(Gluconobacter,((Zymomonas,Caulobacter)48,((Bradyrhizobium,Rhodopseudomonas)100,((Brucella,(Brucella,Brucella)85)100,(Mesorhizobium,((Agrobacterium,Sinorhizobium)87,(Bartonella,Bartonella)100)66)38)50)25)44)44);
(Bacillus,(Shewanella,(Vibrio,(Vibrio,Vibrio)85)57)57);
(((Shewanella,Wolbachia)64,Legionella)100,(Staphylococcus,Staphylococcus));
(Clostridium,(((Burcholderia,Burcholderia)100,Brucella)100,Pseudomonas));
(Thermus,((Methanopyrus,Pyrococcus)33,Methanobacterium));
(Fusobacterium,((Azoarcus,Wolinella)91,Escherichia));
(Enterococcus,(Vibrio,((Vibrio,Vibrio)79,(Escherichia,Shigella)100)100)100);
(((Bacillus,Bacillus)99,(Bacillus,Bacillus)48)100,(Mesorhizobium,Bradyrhizobium));
((Clostridium,Clostridium)95,((Bacillus,Bacillus)83,(Staphylococcus,Staphylococcus)100)100);
(Chlorobium,((Silicibacter,Parachlamydia)64,Helicobacter));
(((Enterococcus,(Lactobacillus,(Listeria,Listeria)100)48)100,(Oceanobacillus,(Bacillus,Bacillus)97)100)63,(((((Yersinia,Yersinia)100,(Salmonella,(Shigella,Escherichia)100)97)80,Erwinia)100,Mannheimia)100,(Bacteroides,(Pirellula,Pirellula)100)75)75);
(Gluconobacter,((Pseudomonas,Idiomarina)55,Xanthomonas));
(Clostridium,(Enterococcus,((Bacillus,Bacillus)100,((Bacillus,Bacillus)100,(Listeria,Listeria)100)18)100)100);
(Clostridium,((Nostos,(Thermosynechococcus,Gloeobacter)51)100,(Staphylococcus,Oceanobacillus)97)97);
((Methanosarcina,Methanosarcina)98,(Chlorobium,(Bacillus,Bacillus)100)100);
(Ureaplasma,((Legionella,Treponema)58,(Methylococcus,Bdellovibrio)67)67);
((Geobacillus,Bacillus)52,((Oceanobacillus,Leptospira)13,(((Bacteroides,(Parachlamydia,Bdellovibrio)51)26,(Bacillus,Bacillus)80)7,(((Ralstonia,(Xylella,((Xanthomonas,Xanthomonas)68,Xanthomonas)99)96)87,(Caulobacter,Bradyrhizobium)35)22,(Pseudomonas,(Yersinia,Yersinia)100)100)33)11)11);
(Clostridium,((((Bordetella,Bordetella)100,Bordetella)100,Bacteroides)100,Bacteroides));
(Nostos,(Pseudomonas,(Bdellovibrio,Vibrio)54)54);
((Thermus,Deinococcus)100,(Borrelia,Borrelia));
(Gloeobacter,((Sinorhizobium,Agrobacterium)78,(Pirellula,Pirellula)100)100);
(Clostridium,((((((Listeria,Listeria)100,((Lactobacillus,Lactobacillus)38,Enterococcus)30)5,((Bacillus,(Bacillus,Bacillus)97)29,((Staphylococcus,Staphylococcus)100,Oceanobacillus)16)9)34,Symbiobacterium)19,Thermoanaerobacter)36,(((((Dehalococcoides,(Treponema,Treponema)100)16,(Mycobacterium,(Tropheryma,Leifsonia)81)83)23,(((Silicibacter,(Desulfotalea,Desulfovibrio)83)16,((((((((((Haemophilus,(Mannheimia,Pasteurella)47)94,((Salmonella,(Shigella,Escherichia)98)100,((Yersinia,Yersinia)100,(Erwinia,Photorhabdus)58)50)100)30,Idiomarina)49,Shewanella)81,(Pseudomonas,(Pseudomonas,Pseudomonas)49)100)41,(Coxiella,Legionella)76)20,Methylococcus)63,Nitrosomonas)35,((Azoarcus,((Ralstonia,(Burcholderia,Burcholderia)100)96,((Bordetella,Bordetella)52,Bordetella)100)98)83,(Neisseria,Chromobacterium)98)19)49,(Xylella,((Xanthomonas,Xanthomonas)92,Xanthomonas)94)100)49)38,Mycoplasma)14)6,(Thermus,Deinococcus)100)1,(Bacteroides,Bacteroides)100)49)49);
(Leptospira,((Pseudomonas,(Pseudomonas,Pseudomonas)37)100,(Mycobacterium,Mycobacterium)100)100);
((Pyrococcus,Halobacterium)69,(Symbiobacterium,(Geobacter,Aquifex)81)81);
(Ralstonia,(((Vibrio,Vibrio)75,Vibrio)96,Vibrio));
(Geobacter,(((Synechosystis,Nostos)67,Thermosynechococcus)60,Gloeobacter));
((Methanosarcina,(Sulforobus,Sulforobus)100)47,(Staphylococcus,(Lactococcus,(((Streptomyces,Zymomonas)78,((Burcholderia,Streptomyces)64,Gluconobacter)40)42,((Salmonella,Escherichia)98,(Bacillus,(Bordetella,(Bordetella,Bordetella)68)100)75)17)18)27)27);
(Gloeobacter,((Streptomyces,Streptomyces)100,Corynebacterium));
(Methanobacterium,((((Vibrio,Vibrio)98,Vibrio)100,Silicibacter)100,Desulfovibrio));
((Symbiobacterium,(Thermoanaerobacter,(Clostridium,Clostridium)21)44)67,(Xylella,(Oceanobacillus,((((Bacillus,Geobacillus)45,Bacillus)43,Bacillus)95,((Staphylococcus,Staphylococcus)100,(Listeria,Listeria)100)76)55)51)51);
(Thermoplasma,(Nostos,(Streptococcus,(((Propionibacterium,Streptomyces)49,Leifsonia)95,(Agrobacterium,(Mesorhizobium,Sinorhizobium)49)100)97)47)47);
(Azoarcus,(((Xanthomonas,Xanthomonas)46,Xanthomonas)100,(Pseudomonas,(Pseudomonas,Pseudomonas)100)100)100);
((Mesorhizobium,Sinorhizobium)100,((Pseudomonas,Pseudomonas)100,(Silicibacter,((Vibrio,(Vibrio,Vibrio)80)100,(Xanthomonas,Xanthomonas)100)36)80)80);
(Fusobacterium,(Wolinella,(Clostridium,((Geobacter,Chlorobium)60,(Acinetobacter,(Bacteroides,Bacteroides)100)67)54)27)27);
(((Streptomyces,Corynebacterium)79,Leifsonia)100,(Streptococcus,Streptococcus));
(Fusobacterium,(((Listeria,Listeria)100,Clostridium)64,(Clostridium,(Symbiobacterium,(Photorhabdus,(Salmonella,(Shigella,Escherichia)100)100)100)100)45)45);
(((Thermococcus,Pyrococcus)57,(Pyrococcus,Pyrococcus)85)100,(Nitrosomonas,((Pirellula,Pirellula)100,(Methanobacterium,(Treponema,Treponema)100)98)71)71);
(Pyrobaculum,((Sulforobus,Sulforobus)100,((Methanopyrus,Aeropyrum)46,(((Pyrococcus,Thermococcus)98,(Pyrococcus,Pyrococcus)100)100,((Thermoplasma,(Picrophilus,Thermoplasma)37)100,((Methanobacterium,Methanobacterium)100,(Methanobacterium,(Archhaeoglobus,((Methanosarcina,Methanosarcina)100,(Halobacterium,Haroarcula)100)93)93)79)24)33)87)50)50);
((Thermoanaerobacter,Clostridium)37,((((Bacillus,Bacillus)100,(Bacillus,(Geobacillus,Oceanobacillus)41)52)64,(Listeria,Listeria)100)46,((Francizella,(Gloeobacter,((Thermosynechococcus,((Prochlorococcus,Synechococcus)97,Nostos)49)21,Synechosystis)88)71)26,((Thermus,(Pirellula,Pirellula)100)57,(Streptomyces,Streptomyces)100)25)26)26);
(Methanobacterium,(Desulfovibrio,((((((((((((Vibrio,Vibrio)100,Pseudomonas)41,Shewanella)25,Erwinia)17,Nitrosomonas)24,Geobacter)37,Deinococcus)65,(Acinetobacter,Bdellovibrio)42)61,(Bacteroides,Bacteroides)99)78,Leptospira)55,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)69)84)100)17,(Sinorhizobium,(Brucella,(Brucella,Brucella)82)100)90)12)12);
(Bacillus,((Streptomyces,Silicibacter)84,Agrobacterium));
(((Gloeobacter,Synechococcus)75,Prochlorococcus)98,(Leifsonia,Sinorhizobium));
(Pyrobaculum,(((Pyrococcus,Pyrococcus)83,Pyrococcus)100,Thermococcus));
((Aquifex,Thermotoga)93,((((Thermococcus,Pyrococcus)68,Pyrococcus)91,(Archhaeoglobus,Haroarcula)22)41,((Sulforobus,Sulforobus)98,(Pyrobaculum,(Picrophilus,(Thermoplasma,Thermoplasma)98)36)33)16)16);
(Nostos,((Bacteroides,Ralstonia)59,Azoarcus));
(Gloeobacter,(Deinococcus,(Pseudomonas,(Xanthomonas,Xanthomonas)100)74)74);
((Bacillus,(Bacillus,(Bacillus,Bacillus)37)63)67,(((Agrobacterium,Bradyrhizobium)48,(Mesorhizobium,Sinorhizobium)69)91,((Bordetella,(Pseudomonas,(Pseudomonas,Pseudomonas)100)99)100,(Silicibacter,(Streptomyces,Streptomyces)100)94)64)64);
((Bacteroides,(Mycoplasma,Azoarcus)40)44,(Lactobacillus,(Lactococcus,Streptococcus)99)99);
(Dehalococcoides,((Corynebacterium,(Corynebacterium,Corynebacterium)97)94,(Mycobacterium,(Streptomyces,Streptomyces)100)96)96);
(Thermus,(((Mycobacterium,Mycobacterium)100,Mycobacterium)100,Deinococcus));
(((Nitrosomonas,(Shewanella,Xanthomonas)20)36,(Neisseria,Zymomonas)79)100,(Pirellula,Pirellula));
(((Oceanobacillus,Clostridium)100,(Bacillus,Bacillus)99)100,(Clostridium,Symbiobacterium));
(((Streptomyces,Streptomyces)100,Nocardia)100,(Yersinia,Yersinia));
(Clostridium,((Bacillus,Bacillus)94,Oceanobacillus));
(((Lactobacillus,(Lactobacillus,Lactobacillus)100)100,(Bacteroides,Bacteroides)96)100,(Methanobacterium,Methanosarcina));
(Methanosarcina,((Bacteroides,Porphyromonas)100,Lactobacillus));
(Clostridium,(((Bacteroides,Azoarcus)59,Nostos)100,Haemophilus));
((((Bordetella,Bordetella)95,Bordetella)100,Pseudomonas)74,(Deinococcus,Streptomyces));
(Bradyrhizobium,(Legionella,((Mesorhizobium,(Bordetella,Silicibacter)64)70,(Photorhabdus,Chromobacterium)100)42)42);
((Sinorhizobium,(Bradyrhizobium,(Agrobacterium,Mesorhizobium)14)20)36,((Acinetobacter,Vibrio)63,(Salmonella,(Shigella,Escherichia)99)100)100);
((Acinetobacter,(Bordetella,(Bordetella,Bordetella)50)100)68,((Silicibacter,Caulobacter)46,(Mesorhizobium,((Sinorhizobium,Agrobacterium)100,((Brucella,(Brucella,Brucella)82)100,(Bartonella,Bartonella)100)25)23)20)20);
(((Xanthomonas,Xanthomonas)75,(Rhodopseudomonas,Mesorhizobium)68)100,(Streptomyces,Nocardia));
(Methanobacterium,((Pirellula,Pirellula)100,Pseudomonas));
((Legionella,Streptomyces)100,(Bacteroides,Bacteroides));
(Deinococcus,((Methanopyrus,((Thermococcus,(Pyrococcus,Pyrococcus)100)100,(Methanobacterium,(Methanobacterium,Methanobacterium)99)84)59)63,((Haroarcula,Halobacterium)100,(Archhaeoglobus,(Methanosarcina,Methanosarcina)100)93)99)99);
(((Bacillus,Bacillus)100,Bacillus)100,(Pirellula,Pirellula));
(Bacillus,((Mycoplasma,(Mycoplasma,Mycoplasma)65)100,Bacillus));
(Nostos,((Shewanella,Bradyrhizobium)100,(Vibrio,(Pirellula,Pirellula)100)91)91);
(Thermosynechococcus,(((((Pseudomonas,((Shewanella,(Vibrio,(Vibrio,(Vibrio,Vibrio)80)47)98)64,Idiomarina)41)37,Methylococcus)60,((Nitrosomonas,Azoarcus)88,Chromobacterium)59)30,Acinetobacter)98,Desulfotalea));
(Nostos,(Coxiella,((((Salmonella,Acinetobacter)30,Azoarcus)13,(Vibrio,Nitrosomonas)46)69,(Sinorhizobium,(Agrobacterium,(Mesorhizobium,(Brucella,(Brucella,Brucella)98)100)61)81)48)86)86);
(((Staphylococcus,Staphylococcus)100,(Streptococcus,(Streptococcus,Streptococcus)45)100)43,(((Porphyromonas,Bacteroides)97,(Pasteurella,Haemophilus)100)97,(Xanthomonas,(((Geobacillus,(Bacillus,Bacillus)61)31,(Bacillus,Oceanobacillus)44)27,(Deinococcus,(Streptomyces,(Mycobacterium,Mycobacterium)100)100)55)71)100)100);
(Bdellovibrio,((Nitrosomonas,Azoarcus)77,(Pseudomonas,Pseudomonas)100)100);
(Agrobacterium,((Shewanella,Bradyrhizobium)62,Bordetella));
(Streptomyces,(((Pseudomonas,(Sinorhizobium,Mesorhizobium)100)43,Pseudomonas)100,((Chromobacterium,Azoarcus)75,(Burcholderia,Burcholderia)100)100)100);
(((Xanthomonas,Xanthomonas)100,Xanthomonas)100,(Propionibacterium,Leifsonia));
(Clostridium,((Mycoplasma,(Mycoplasma,Mycoplasma)100)44,(Mycoplasma,(Mycoplasma,Mycoplasma)100)83)83);
(Bdellovibrio,(((Chromobacterium,(Azoarcus,Acinetobacter)59)54,(Neisseria,Pasteurella)100)100,(Ralstonia,(Burcholderia,Burcholderia)100)100)100);
(Photorhabdus,((Burcholderia,Burcholderia)100,(Bordetella,Bordetella)100)100);
(Nocardia,((Shigella,(Chromobacterium,(Salmonella,Escherichia)58)66)54,(Burcholderia,Burcholderia)100)100);
(Chlorobium,(((Xanthomonas,Xanthomonas)86,Xanthomonas)100,Desulfotalea));
(Aeropyrum,((((Bordetella,Bordetella)97,Bordetella)100,Ralstonia)96,(Burcholderia,Burcholderia)100)100);
((Silicibacter,Idiomarina)76,(Bacillus,(Oceanobacillus,Bacillus)88)88);
((Treponema,Treponema)100,(Bacteroides,Bacteroides));
((Burcholderia,Bordetella)52,(Silicibacter,(Rhodopseudomonas,(Bradyrhizobium,Sinorhizobium)100)56)56);
((((Xanthomonas,Xanthomonas)86,Xanthomonas)97,Pseudomonas)44,(Gluconobacter,Caulobacter));
(Chromobacterium,(Shewanella,(Pseudomonas,Pseudomonas)100)100);
(Propionibacterium,(Mesorhizobium,(Agrobacterium,Sinorhizobium)87)87);
(((Thermoplasma,Thermoplasma)90,Picrophilus)90,(Pyrobaculum,(Acinetobacter,(Propionibacterium,(Pseudomonas,(Pseudomonas,Pseudomonas)81)100)71)100)100);
(((((Pseudomonas,Pseudomonas)85,Pseudomonas)77,Acinetobacter)93,(Xylella,((Xanthomonas,Xanthomonas)80,Xanthomonas)100)100)100,(Nitrosomonas,Azoarcus));
(Oceanobacillus,((Pyrococcus,Pyrococcus)94,Pyrococcus));
(((Gluconobacter,Zymomonas)70,(Caulobacter,(Rhodopseudomonas,(Agrobacterium,((Brucella,Brucella)82,Brucella)100)94)100)58)99,(Xanthomonas,(Xanthomonas,Xanthomonas)72)72);
(Methylococcus,(Silicibacter,(Sinorhizobium,Bradyrhizobium)94)94);
(Nostos,(((((Streptomyces,Streptomyces)100,Deinococcus)44,((Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)96)100)74,(Corynebacterium,(Corynebacterium,Corynebacterium)71)100)70)51,((Bifidobacterium,Propionibacterium)83,Leifsonia)83)100,(Agrobacterium,Mesorhizobium)100)100);
((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)57)70)97,((((((((((((((((((Bordetella,Bordetella)66,Bordetella)100,((Francizella,((Neisseria,(Chromobacterium,Nitrosomonas)24)41,(Ralstonia,(Burcholderia,Burcholderia)100)34)37)12,Azoarcus)9)11,(Coxiella,(Acinetobacter,(Pseudomonas,(Pseudomonas,Pseudomonas)51)64)32)35)17,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)87)93)50)19,Methylococcus)17,Legionella)70,((((Anaplasma,Ehrlichia)98,(Wolbachia,Wolbachia)88)99,(Rickettsia,(Rickettsia,Rickettsia)93)100)73,(Zymomonas,Gluconobacter)31)72)59,((Helicobacter,Helicobacter)55,(Campylobacter,Wolinella)30)77)29,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)98)48)99)48,Parachlamydia)68,Thermus)47,(Gloeobacter,((Synechococcus,Prochlorococcus)100,(Nostos,(Synechosystis,Thermosynechococcus)86)94)100)88)99,Thermoplasma)43,Nanoarchaeum)24,(((Methanobacterium,(Halobacterium,Haroarcula)100)39,(((Leifsonia,((((Corynebacterium,Corynebacterium)72,Corynebacterium)99,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)98)77)80,(Streptomyces,Streptomyces)100)46)38,Tropheryma)53,Bifidobacterium)100)26,(Methanopyrus,(Idiomarina,(((Mannheimia,(Pasteurella,Haemophilus)96)77,(Wigglesworthia,(Photorhabdus,(((Escherichia,Shigella)100,Salmonella)97,(Erwinia,(Yersinia,Yersinia)100)41)74)63)40)44,Shewanella)41)100)33)42)34,Aquifex)34,(Pyrobaculum,(Aeropyrum,(Sulforobus,Sulforobus)97)70)97)97);
((((Mycobacterium,Mycobacterium)100,Nocardia)81,(Corynebacterium,Corynebacterium)100)100,(Pseudomonas,Pseudomonas));
(((Streptomyces,Streptomyces)100,Nocardia)89,(Bradyrhizobium,(Bordetella,Bordetella)100)100);
(((Salmonella,Erwinia)100,Photorhabdus)100,(Bordetella,(Chromobacterium,(Vibrio,Vibrio)100)100)100);
(Bradyrhizobium,((Bordetella,Bordetella)28,Bordetella));
(Haroarcula,((Brucella,(Brucella,Brucella)76)100,(Photorhabdus,(Yersinia,Yersinia)100)44)44);
(Gluconobacter,(((Pseudomonas,Pseudomonas)81,Pseudomonas)99,Methylococcus));
((((Shigella,Escherichia)100,Salmonella)100,(Yersinia,Yersinia)100)100,(Burcholderia,Burcholderia));
(Aquifex,(Bdellovibrio,((Bacteroides,Leptospira)91,(Vibrio,Vibrio)99)74)74);
(Methanosarcina,((Streptomyces,Streptomyces)97,Chromobacterium));
(Methylococcus,((((Bordetella,Bordetella)89,Bordetella)100,Ralstonia)92,Nitrosomonas));
(Thermoanaerobacter,(Bacillus,(Deinococcus,(Gloeobacter,((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)62)100)100,(Shewanella,Idiomarina)100)54)73)84)84);
((Pyrococcus,Pyrococcus)100,(Deinococcus,(Streptomyces,Streptomyces)100)100);
((Yersinia,Yersinia)100,(Burcholderia,Burcholderia));
((Halobacterium,Haroarcula)99,(Bdellovibrio,(Xanthomonas,Ralstonia)100)100);
(Streptococcus,((Pseudomonas,Rhodopseudomonas)30,Pasteurella));
(Chromobacterium,(Legionella,(Xanthomonas,Methylococcus)79)79);
(Gluconobacter,(((Burcholderia,Legionella)47,Escherichia)54,Burcholderia));
((Bacteroides,Bacteroides)98,(Helicobacter,(Vibrio,(Mesorhizobium,Francizella)92)92)92);
(Methanobacterium,(((Streptococcus,Streptococcus)100,Fusobacterium)89,(Bifidobacterium,(Lactobacillus,Lactobacillus)100)100)100);
(Synechococcus,((((((Xanthomonas,Xanthomonas)71,Xanthomonas)62,Xylella)100,(Blochmannia,(Buchnera,Buchnera)44)95)100,Vibrio)48,Campylobacter));
(Aquifex,(((Wolinella,Helicobacter)94,Campylobacter)100,Thermus));
(Coxiella,((((Bordetella,Bordetella)100,Bordetella)100,Legionella)93,Nitrosomonas));
(Streptomyces,((Brucella,Brucella)25,Brucella));
((Bacillus,Bacillus)100,(Synechosystis,Nostos));
(Gloeobacter,(((Xanthomonas,Xanthomonas)100,Xanthomonas)100,Caulobacter));
(Gloeobacter,((Mesorhizobium,(Chlorobium,Campylobacter)55)68,((Propionibacterium,Streptomyces)57,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)97)97);
(((Nocardia,Streptococcus)46,Sinorhizobium)76,(Enterococcus,(Listeria,Listeria)91)91);
(Streptococcus,(((Enterococcus,Lactococcus)78,Mycoplasma)100,Streptococcus));
(Gluconobacter,((Pseudomonas,Pseudomonas)57,Pseudomonas));
(Streptomyces,((Ralstonia,Vibrio)100,Bradyrhizobium));
(Thermococcus,(Thermoanaerobacter,(Nostos,Gloeobacter)64)64);
(Nocardia,((Pseudomonas,Legionella)95,Mesorhizobium));
(Clostridium,((((((Streptococcus,Streptococcus)39,Streptococcus)40,Streptococcus)66,Lactococcus)41,(Lactobacillus,Enterococcus)65)100,Bifidobacterium));
(Pyrobaculum,((Aeropyrum,(Sulforobus,Sulforobus)77)73,((((Methanosarcina,Methanosarcina)100,Archhaeoglobus)22,(Nanoarchaeum,Methanopyrus)37)18,(Methanobacterium,(((Thermococcus,(Pyrococcus,Pyrococcus)98)51,Pyrococcus)100,(Picrophilus,(Thermoplasma,Thermoplasma)100)100)20)23)99)99);
(Haroarcula,(Thermoanaerobacter,(Xylella,Mannheimia)100)100);
((Xanthomonas,Xanthomonas)100,(Halobacterium,Haroarcula));
(((Pirellula,Pirellula)100,Deinococcus)100,(Bacillus,Bacillus));
((((Vibrio,Shewanella)89,Vibrio)100,Acinetobacter)100,(Silicibacter,((Sinorhizobium,Agrobacterium)100,(Caulobacter,(Rhodopseudomonas,Bradyrhizobium)100)98)81)81);
(Streptomyces,(Rhodopseudomonas,((Bordetella,(Bordetella,Bordetella)66)100,(Agrobacterium,(Erwinia,Pseudomonas)100)33)46)46);
(Methanobacterium,((Bacillus,Oceanobacillus)34,Bacillus));
((Thermoanaerobacter,Dehalococcoides)85,(Pyrococcus,Methanobacterium));
(Shewanella,((Sinorhizobium,Agrobacterium)97,Mesorhizobium));
((Methanosarcina,Methanosarcina)73,(Clostridium,(Sinorhizobium,Agrobacterium)100)100);
(Gloeobacter,(Treponema,(Pirellula,Pirellula)100)100);
(Archhaeoglobus,((Desulfovibrio,Desulfotalea)96,Chlorobium));
(Aeropyrum,((Mesorhizobium,(Photorhabdus,(Clostridium,(Oceanobacillus,(Bacillus,Bacillus)68)91)86)96)43,(Mycoplasma,(((Sinorhizobium,Silicibacter)100,(Pseudomonas,Legionella)89)60,(Leifsonia,(Streptomyces,Streptomyces)100)99)38)32)32);
((Thermus,Sinorhizobium)100,(Bacteroides,Bacteroides));
(Aquifex,((Helicobacter,Helicobacter)64,Wolinella));
(Thermococcus,(Pyrobaculum,(Photorhabdus,Thermus)41)41);
(((Bacillus,(Pasteurella,Staphylococcus)80)59,Chromobacterium)100,(Streptococcus,(Streptococcus,Streptococcus)48)48);
(Aquifex,(Methylococcus,((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)71)100)98,((Yersinia,Erwinia)95,(((Leptospira,Synechococcus)48,Shewanella)8,((Pseudomonas,Pseudomonas)97,(Gluconobacter,(Nocardia,Streptomyces)98)67)27)7)22)32)32);
(Aquifex,((((((Wolbachia,Wolbachia)100,((Silicibacter,Gluconobacter)52,(Rickettsia,(Rickettsia,Rickettsia)99)100)50)40,(Anaplasma,Ehrlichia)64)96,((Borrelia,Treponema)48,Treponema)65)67,Gloeobacter)48,(Tropheryma,(Streptomyces,Streptomyces)99)100)100);
(((Lactobacillus,((Streptococcus,Streptococcus)95,(Streptococcus,Streptococcus)50)59)71,(Bacillus,Bacillus)100)54,((Nostos,Lactococcus)34,((((((Yersinia,Yersinia)100,Shewanella)42,(Vibrio,Vibrio)100)96,Chromobacterium)45,Acinetobacter)48,(Caulobacter,Mesorhizobium)100)32)32);
(Synechosystis,((((Vibrio,Desulfotalea)74,(Vibrio,Vibrio)100)100,Desulfovibrio)96,(Bacteroides,Bacteroides)100)100);
(Parachlamydia,(Idiomarina,(Geobacter,(Pseudomonas,Pseudomonas)91)78)78);
((Pseudomonas,(Pseudomonas,Pseudomonas)35)100,(Bordetella,Bordetella));
(Haroarcula,(((Brucella,Brucella)69,Brucella)100,(Streptomyces,Streptomyces)100)100);
((Lactococcus,((Lactobacillus,Enterococcus)31,(Bacillus,Bacillus)100)27)100,(Leptospira,(Pseudomonas,Pseudomonas)100)100);
(Mesorhizobium,(Acinetobacter,(Bordetella,Bordetella)100)100);
((((Bacillus,Bacillus)70,(Bacillus,Bacillus)100)95,(Listeria,Listeria)100)73,(Bdellovibrio,(Zymomonas,(Vibrio,(Burcholderia,Burcholderia)100)52)46)46);
(Mesorhizobium,(((Lactobacillus,Lactobacillus)94,Lactococcus)100,Staphylococcus));
(Bifidobacterium,(Acinetobacter,(Burcholderia,Burcholderia)100)100);
(((Mannheimia,Pasteurella)78,(Yersinia,Yersinia)100)100,(Pirellula,Pirellula));
(Desulfovibrio,((Bordetella,Bordetella)25,Bordetella));
((Halobacterium,Haroarcula)96,((Bacillus,Bacillus)97,(Parachlamydia,(Streptomyces,(Mycobacterium,Mycobacterium)100)100)64)64);
(Clostridium,(((Lactobacillus,Lactobacillus)100,Listeria)100,(Yersinia,Yersinia)100)100);
(((Bradyrhizobium,Erwinia)85,Nostos)100,(Bacillus,Bacillus));
((((((Treponema,Parachlamydia)48,((Leifsonia,((Streptomyces,Streptomyces)100,((Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)93)100,(Corynebacterium,(Corynebacterium,Corynebacterium)100)100)99)66)99,((Chlorobium,Geobacter)99,(Azoarcus,(Acinetobacter,((Burcholderia,Burcholderia)100,(Ralstonia,(Bordetella,Bordetella)100)45)99)82)68)99)80)42,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)100)66)100)97,(Thermoplasma,Thermoplasma)100)100,Desulfotalea)97,((Sulforobus,Sulforobus)100,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)90)100)100)100);
(Porphyromonas,(((Xanthomonas,Xanthomonas)99,Xanthomonas)100,Caulobacter));
((Oceanobacillus,(Bacillus,Bacillus)100)98,(((Mycobacterium,Mycobacterium)100,(Nocardia,(Streptomyces,Streptomyces)100)93)86,(Chromobacterium,Silicibacter)100)100);
(Gloeobacter,(((Bordetella,Bordetella)64,Bordetella)100,(Sinorhizobium,Azoarcus)96)96);
(Symbiobacterium,(Deinococcus,(Listeria,Listeria)100)100);
(Clostridium,(Bacillus,(Listeria,Listeria)100)100);
(Wolinella,(Porphyromonas,(Bacteroides,Bacteroides)78)78);
(Bdellovibrio,(((Vibrio,Vibrio)95,Vibrio)95,Legionella));
(Aeropyrum,(Nocardia,(Ralstonia,(Rhodopseudomonas,Vibrio)43)85)85);
(Pseudomonas,(Silicibacter,(Agrobacterium,Bradyrhizobium)97)97);
(Ralstonia,(((Brucella,Brucella)84,Brucella)100,(Mesorhizobium,Bradyrhizobium)100)100);
(Methanosarcina,(((Brucella,Brucella)69,Brucella)99,Bradyrhizobium));
(Pseudomonas,((Brucella,Brucella)100,Agrobacterium));
(Zymomonas,(Chromobacterium,((Pasteurella,Acinetobacter)69,(Erwinia,(Yersinia,Yersinia)100)100)88)88);
(Pyrobaculum,((Sulforobus,Sulforobus)92,Aeropyrum));
(Clostridium,(((Lactobacillus,Lactococcus)82,Streptococcus)89,Treponema));
((Pyrococcus,Thermococcus)100,(Mycobacterium,Mycobacterium));
(Gloeobacter,((Xanthomonas,Xanthomonas)100,(Pirellula,Pirellula)100)100);
(Bdellovibrio,(Zymomonas,(Agrobacterium,Sinorhizobium)100)100);
(Ureaplasma,((Rickettsia,Wolbachia)63,(Chlamydophila,(Chlamydophila,Chlamydophila)97)94)94);
((Streptomyces,Streptomyces)100,(((((Bordetella,(Bordetella,Bordetella)96)100,(Ralstonia,(Burcholderia,Burcholderia)100)97)69,(Xanthomonas,(Xanthomonas,Xanthomonas)43)100)100,(Caulobacter,(Pseudomonas,(Pseudomonas,Pseudomonas)77)100)58)65,((Bdellovibrio,Legionella)69,(((Silicibacter,(Sinorhizobium,Mesorhizobium)97)63,(Bradyrhizobium,Rhodopseudomonas)100)95,(Shewanella,Vibrio)100)57)62)62);
(Fusobacterium,((Clostridium,(Clostridium,Clostridium)75)100,((((((((Desulfotalea,Bdellovibrio)50,(Porphyromonas,(Bacteroides,Bacteroides)100)39)11,((Vibrio,(Vibrio,(Vibrio,Vibrio)62)88)100,(Pseudomonas,(Pseudomonas,Pseudomonas)99)100)48)35,Shewanella)22,(Pirellula,Pirellula)100)23,(Helicobacter,Wolinella)98)36,Francizella)49,((((Bacillus,Bacillus)100,(Bacillus,Bacillus)100)85,Bacillus)49,(Oceanobacillus,(((((Lactobacillus,(Lactobacillus,Lactobacillus)100)78,Enterococcus)43,(Lactococcus,(((Streptococcus,(Streptococcus,Streptococcus)39)39,Streptococcus)35,Streptococcus)100)100)74,(Listeria,Listeria)100)84,(Staphylococcus,Staphylococcus)100)68)52)100)76)76);
((((Pyrococcus,Pyrococcus)58,Pyrococcus)100,Thermococcus)100,(Clostridium,(Chlamydophila,Chlamydophila)100)100);
(Neisseria,(Francizella,(((((((((Salmonella,(Shigella,Escherichia)100)100,Photorhabdus)25,(Erwinia,(Yersinia,Yersinia)100)77)77,(Blochmannia,Wigglesworthia)55)37,((Haemophilus,Mannheimia)56,Pasteurella)100)78,(Vibrio,(Vibrio,Vibrio)38)100)44,Idiomarina)29,Shewanella)74,((Pseudomonas,(Pseudomonas,Pseudomonas)89)100,((Coxiella,Legionella)42,(Xanthomonas,Xanthomonas)100)11)43)34)34);
(((Erwinia,(Salmonella,(Escherichia,Shigella)100)88)64,(((Yersinia,Yersinia)100,Photorhabdus)54,((Pasteurella,Haemophilus)63,Mannheimia)98)63)100,(Azoarcus,(Neisseria,((Chromobacterium,Nitrosomonas)63,(Ralstonia,(Burcholderia,Burcholderia)100)95)34)51)51);
(Thermococcus,((((((((((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)46)72)100,(Pseudomonas,(Pseudomonas,Pseudomonas)55)100)23,(Nitrosomonas,((((Bordetella,(Bordetella,Bordetella)78)100,(Ralstonia,(Burcholderia,Burcholderia)100)97)98,(Acinetobacter,Neisseria)52)22,Azoarcus)25)43)25,Methylococcus)34,(((Shewanella,((Blochmannia,Wigglesworthia)73,((Mannheimia,(Haemophilus,Pasteurella)98)100,((Vibrio,(Erwinia,(((Yersinia,Yersinia)100,(Salmonella,(Shigella,Escherichia)100)99)39,Photorhabdus)61)61)30,(Vibrio,(Vibrio,Vibrio)100)93)34)36)57)66,Idiomarina)64,Francizella)9)8,(Legionella,Coxiella)71)51,(Anaplasma,Aquifex)45)23,((Gluconobacter,(Bradyrhizobium,((Mesorhizobium,(Brucella,(Brucella,Brucella)59)100)66,(Agrobacterium,Sinorhizobium)74)100)99)61,Silicibacter)99)35,Fusobacterium)22,((Helicobacter,((Corynebacterium,Leifsonia)100,((((Synechococcus,Synechosystis)100,(Streptococcus,Streptococcus)100)70,(Thermus,Symbiobacterium)93)33,(((Bacillus,Clostridium)33,Clostridium)32,Clostridium)92)38)84)37,((Bacteroides,Bacteroides)100,(Treponema,Treponema)100)48)24)24);
(Thermotoga,(Enterococcus,(Listeria,Listeria)100)100);
(Mesorhizobium,(Azoarcus,(Burcholderia,Burcholderia)100)100);
(Corynebacterium,(Porphyromonas,(Bacteroides,Bacteroides)100)100);
(Synechosystis,(((Mesorhizobium,Burcholderia)55,Bradyrhizobium)100,Ralstonia));
((((((Burcholderia,Burcholderia)100,Ralstonia)99,Chromobacterium)100,Legionella)100,Ehrlichia)53,(Synechococcus,Prochlorococcus));
(Methylococcus,((Mycobacterium,Mycobacterium)31,Nocardia));
(Clostridium,((((Vibrio,Vibrio)45,(Vibrio,Vibrio)75)98,Shewanella)100,Deinococcus));
(Ralstonia,((Corynebacterium,Corynebacterium)94,(Mycobacterium,Mycobacterium)100)100);
(Pyrobaculum,(Aeropyrum,((Sulforobus,Sulforobus)100,((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)67)97)100,((Methanobacterium,Methanobacterium)95,((Methanopyrus,Methanobacterium)49,(((Picrophilus,(Thermoplasma,Thermoplasma)99)99,Nanoarchaeum)30,(Archhaeoglobus,((Methanosarcina,Methanosarcina)100,(Halobacterium,Haroarcula)100)73)74)3)8)32)59)80)80);
(Agrobacterium,(Bacillus,(Bacillus,(Bacillus,Bacillus)74)71)71);
(Bdellovibrio,((((Xanthomonas,Xanthomonas)58,Xanthomonas)56,Xylella)100,Wolinella));
(Bdellovibrio,((((Chromobacterium,Shewanella)44,Desulfotalea)39,Pseudomonas)39,Pseudomonas));
(Prochlorococcus,(Mannheimia,(Bdellovibrio,(Pirellula,Pirellula)100)91)91);
(Bdellovibrio,(((Ralstonia,Nitrosomonas)45,Silicibacter)68,(Xylella,(Mesorhizobium,Sinorhizobium)96)98)98);
(Fusobacterium,((Shewanella,(Vibrio,Vibrio)100)100,(Streptomyces,(Lactococcus,Streptococcus)100)83)83);
(Bacillus,((Clostridium,Clostridium)90,Thermoanaerobacter));
((Gloeobacter,(Synechosystis,(Thermosynechococcus,Nostos)37)72)100,(((Methanobacterium,(Methanobacterium,Methanobacterium)98)99,(Archhaeoglobus,(Methanosarcina,Methanosarcina)100)49)48,(Haroarcula,Halobacterium)100)100);
(Bacteroides,((((Xanthomonas,(Xanthomonas,Xanthomonas)75)100,Xylella)100,Methylococcus)89,(Bacteroides,Pseudomonas)68)68);
(((Pseudomonas,Pseudomonas)64,Pseudomonas)100,(Desulfotalea,Geobacter));
(Sinorhizobium,(((Xanthomonas,Xanthomonas)91,Xanthomonas)98,(Chromobacterium,Pseudomonas)42)42);
(Thermosynechococcus,(((((((Haemophilus,(Mannheimia,Pasteurella)80)99,(Escherichia,Shigella)100)72,(Vibrio,(Vibrio,Vibrio)46)97)100,Shewanella)89,Chlorobium)99,Parachlamydia)99,(Desulfotalea,(Bacteroides,Bacteroides)100)100)100);
(Azoarcus,(((((Vibrio,(Vibrio,Vibrio)67)79,Vibrio)56,Idiomarina)55,Shewanella)98,(Pseudomonas,(Pseudomonas,Pseudomonas)65)100)100);
(Symbiobacterium,(Streptomyces,(Pirellula,Pirellula)100)100);
(Chromobacterium,(Legionella,(Erwinia,Acinetobacter)78)78);
(Leptospira,((Streptomyces,(Streptomyces,Propionibacterium)44)99,(Pseudomonas,((Silicibacter,Mesorhizobium)57,(Rhodopseudomonas,Bradyrhizobium)100)88)92)92);
(Synechosystis,(Leptospira,(Sinorhizobium,Mesorhizobium)100)100);
(Fusobacterium,(Dehalococcoides,((((((Geobacillus,((Bacillus,((Bacillus,Bacillus)38,(Listeria,Listeria)100)47)51,(Bacillus,Bacillus)100)66)100,Thermus)61,Symbiobacterium)46,Desulfovibrio)47,Geobacter)11,(Thermotoga,(Thermoanaerobacter,(Clostridium,Clostridium)100)93)27)42)42);
((Nostos,Thermosynechococcus)95,((Bdellovibrio,Methylococcus)43,(Treponema,(Chromobacterium,((Pseudomonas,(Pseudomonas,Pseudomonas)62)100,(Burcholderia,Burcholderia)100)53)100)61)61);
(Pyrobaculum,((Methanobacterium,Methanobacterium)100,Archhaeoglobus));
(Symbiobacterium,(Staphylococcus,(Bacillus,Bacillus)98)98);
(Clostridium,(Lactobacillus,(Xylella,Ralstonia)100)100);
((((Thermoplasma,Thermoplasma)100,Picrophilus)100,(Sulforobus,Sulforobus)100)100,(Nocardia,(Bradyrhizobium,Methylococcus)90)90);
(Fusobacterium,((((Streptococcus,Streptococcus)62,(Streptococcus,Streptococcus)80)97,Streptococcus)99,((Desulfotalea,((Propionibacterium,Xylella)78,(Xanthomonas,(Xanthomonas,Xanthomonas)77)100)93)100,(Bacillus,(Pyrobaculum,(Bacillus,(Geobacillus,Bacillus)85)100)26)38)67)67);
(((Geobacillus,Bacillus)65,Bacillus)100,(Clostridium,Symbiobacterium));
((Pyrobaculum,(Aeropyrum,(Deinococcus,Thermus)100)53)42,(Methanobacterium,((Halobacterium,Haroarcula)100,(Pyrococcus,Thermococcus)100)56)56);
(Symbiobacterium,(Bacillus,(Geobacillus,(Bacillus,Bacillus)100)72)72);
(Fusobacterium,(Xanthomonas,(Yersinia,Yersinia)100)100);
(Methylococcus,(Nocardia,(Mycobacterium,Mycobacterium)86)86);
((((Gluconobacter,Mesorhizobium)38,((Ralstonia,(Chromobacterium,(Burcholderia,Burcholderia)100)94)43,Silicibacter)46)30,(Bordetella,(Bordetella,Bordetella)79)100)100,(Brucella,(Brucella,Brucella)73)73);
(Methanobacterium,((((((Yersinia,Yersinia)100,Erwinia)50,(Salmonella,(Shigella,Escherichia)100)97)95,(Vibrio,(Vibrio,(Vibrio,Vibrio)43)88)100)70,(Pasteurella,Mannheimia)100)100,Desulfovibrio));
(Pyrobaculum,((Pyrococcus,Pyrococcus)100,(Sulforobus,Sulforobus)100)100);
(Methanosarcina,(Mycoplasma,(Lactococcus,Mycoplasma)49)49);
(Haroarcula,(Vibrio,(((Shigella,Escherichia)100,Salmonella)98,(Photorhabdus,(Yersinia,Yersinia)100)69)69)69);
(Clostridium,(Bacillus,(Bacteroides,(Pirellula,Pirellula)100)100)100);
(Rhodopseudomonas,((Vibrio,Zymomonas)93,Xanthomonas));
(Aeropyrum,(Pyrobaculum,(Oceanobacillus,Clostridium)100)100);
(Ralstonia,((Mesorhizobium,Caulobacter)100,Zymomonas));
((Streptococcus,Streptococcus)100,((Vibrio,Vibrio)100,((Neisseria,Rhodopseudomonas)74,(Corynebacterium,Corynebacterium)100)56)56);
(Gloeobacter,(((Xanthomonas,Xanthomonas)90,Xanthomonas)80,Xylella));
((Desulfotalea,Rhodopseudomonas)100,(Streptomyces,Propionibacterium));
(Pyrobaculum,((Sulforobus,Sulforobus)97,Aeropyrum));
(Bacillus,((Anaplasma,Helicobacter)74,(Geobacter,Desulfovibrio)82)82);
(Chromobacterium,(Vibrio,(Yersinia,Yersinia)100)100);
(Bordetella,(Mycobacterium,(Streptomyces,Nocardia)99)99);
(Fusobacterium,(((((Bacillus,Bacillus)100,Oceanobacillus)58,Bacillus)59,((Lactococcus,Enterococcus)100,(Bacillus,Bacillus)100)81)76,(Pasteurella,(Erwinia,(Escherichia,Shigella)100)91)100)100);
((Agrobacterium,Sinorhizobium)100,((Pseudomonas,Pseudomonas)96,(Bordetella,Bordetella)100)100);
((((Bacillus,Bacillus)91,Bacillus)99,Geobacillus)100,(((Oceanobacillus,Pseudomonas)100,(Corynebacterium,(Listeria,Listeria)100)70)71,(Pirellula,Pirellula)100)100);
((Geobacter,(Methanobacterium,(Thermosynechococcus,Clostridium)75)72)100,(Methanosarcina,Methanosarcina));
(((Sulforobus,Sulforobus)99,Aeropyrum)100,(Streptomyces,Bradyrhizobium));
((((((Bacillus,(Listeria,Listeria)100)57,Staphylococcus)38,Oceanobacillus)97,Geobacillus)100,Bacillus)58,((Propionibacterium,Corynebacterium)100,(Streptomyces,Streptomyces)100)100);
((((Staphylococcus,Oceanobacillus)48,Mycoplasma)15,Ureaplasma)29,(Rhodopseudomonas,((Bdellovibrio,Leptospira)29,(Gluconobacter,(Streptococcus,Lactococcus)53)34)18)18);
(Desulfovibrio,(Shigella,(((Bordetella,Bordetella)69,Bordetella)100,(Haemophilus,Pasteurella)100)81)81);
(Streptomyces,((Sinorhizobium,Mesorhizobium)100,Erwinia));
(Francizella,(Bifidobacterium,(((Propionibacterium,Streptomyces)22,Corynebacterium)40,(Leifsonia,Tropheryma)98)67)67);
(Clostridium,((((((Caulobacter,(Sinorhizobium,(Brucella,Brucella)100)72)56,Geobacillus)45,(Bacillus,(Bacillus,Bacillus)95)100)89,Streptomyces)100,Mycoplasma)58,(Bacillus,Clostridium)45)45);
(((Xanthomonas,(Xanthomonas,Xanthomonas)91)100,Azoarcus)100,(Nostos,Gloeobacter));
(Desulfovibrio,((Escherichia,Shigella)100,Neisseria));
(Pyrobaculum,(Aeropyrum,((Picrophilus,(Thermoplasma,Thermoplasma)97)100,(Nanoarchaeum,(Archhaeoglobus,(Methanobacterium,((Halobacterium,Haroarcula)100,(Methanosarcina,Methanosarcina)100)98)54)30)33)73)73);
(Leptospira,(((Bacillus,Bacillus)100,Bacillus)100,(Listeria,Listeria)100)100);
(((Bordetella,Bordetella)81,Bordetella)100,(Pseudomonas,Photorhabdus));
(Thermotoga,(((Clostridium,Clostridium)68,Clostridium)100,((Porphyromonas,Bacteroides)100,(Treponema,(Legionella,Phytoplasma)73)87)37)37);
((Geobacter,Bdellovibrio)74,(Burcholderia,Ralstonia));
(Symbiobacterium,((((Synechosystis,Nostos)50,Thermosynechococcus)86,Gloeobacter)71,Synechococcus));
((((Archhaeoglobus,(Sulforobus,Pyrobaculum)53)38,Aquifex)35,(Methanosarcina,Thermotoga)64)97,(Picrophilus,(Thermoplasma,Thermoplasma)74)74);
(Bdellovibrio,(((Pyrococcus,Pyrococcus)99,(Pyrococcus,Thermococcus)81)99,(((Methanobacterium,Methanobacterium)100,(Methanopyrus,Methanobacterium)31)39,(Methanosarcina,Methanosarcina)100)59)59);
(Helicobacter,((Mesorhizobium,Sinorhizobium)100,Azoarcus));
(Fusobacterium,((Bacteroides,Bacteroides)100,(Pirellula,Pirellula)100)100);
(Clostridium,((Bacillus,Bacillus)35,Bacillus));
(Synechococcus,((Pirellula,Pirellula)100,Deinococcus));
(((Staphylococcus,Staphylococcus)100,Bacillus)100,(Pseudomonas,(Yersinia,Yersinia)100)100);
(Caulobacter,((Xanthomonas,(Xanthomonas,Xanthomonas)28)100,(Pseudomonas,Pseudomonas)72)72);
(Chromobacterium,((Pseudomonas,Erwinia)98,(Vibrio,Vibrio)100)100);
(((Geobacter,Bifidobacterium)98,Chromobacterium)100,(Mycobacterium,Mycobacterium));
(((Methanobacterium,(Methanosarcina,Methanosarcina)100)36,(Methanobacterium,Methanobacterium)97)96,((((Xanthomonas,(Xanthomonas,Xanthomonas)99)100,((((Ralstonia,(Burcholderia,Burcholderia)100)73,(Bordetella,(Bordetella,Bordetella)86)100)49,(Nitrosomonas,(Azoarcus,Methylococcus)28)45)40,Chromobacterium)31)100,(Desulfovibrio,((Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)98,(Streptomyces,Streptomyces)100)100)80)100,(((Archhaeoglobus,Sulforobus)17,(Bacteroides,(Idiomarina,Caulobacter)100)24)59,(Picrophilus,(Thermoplasma,Thermoplasma)96)100)30)30);
(Thermotoga,((Wolinella,Helicobacter)87,Wigglesworthia));
(Mesorhizobium,(Xanthomonas,(Xanthomonas,Xanthomonas)37)37);
(Synechosystis,((Pseudomonas,Nitrosomonas)45,(Bradyrhizobium,(Escherichia,Photorhabdus)100)47)47);
((((Brucella,Brucella)100,Brucella)99,Bradyrhizobium)96,(Idiomarina,Ralstonia));
(Agrobacterium,((Pseudomonas,Sinorhizobium)77,Pseudomonas));
(Aquifex,(Francizella,(((Xanthomonas,Pseudomonas)70,Vibrio)26,(Mycobacterium,Nostos)86)46)46);
((((((Bacillus,Bacillus)98,Bacillus)58,Oceanobacillus)49,Geobacillus)56,(Bacillus,Bacillus)100)100,(Rickettsia,(Rickettsia,Rickettsia)78)78);
(Pseudomonas,((Bordetella,Bordetella)12,Bordetella));
(Thermotoga,(Campylobacter,((Streptococcus,Lactococcus)88,((Mycoplasma,((Chlamydophila,Chlamydophila)68,Chlamydophila)100)49,(Mycoplasma,Mycoplasma)100)98)68)68);
(Bacillus,((Clostridium,Clostridium)87,Clostridium));
(Streptomyces,((Geobacter,Photorhabdus)68,Chromobacterium));
(Desulfotalea,(Shewanella,(Helicobacter,Helicobacter)100)100);
(((Mycobacterium,Mycobacterium)100,Streptomyces)100,(Silicibacter,Sinorhizobium));
(((Bacteroides,Bacteroides)100,Ralstonia)100,(Listeria,Listeria));
(Fusobacterium,(Clostridium,(Bdellovibrio,(Synechococcus,Thermosynechococcus)100)35)35);
(Salmonella,(Chromobacterium,(Burcholderia,Burcholderia)100)100);
((Haemophilus,Mannheimia)41,(Neisseria,(Chromobacterium,(Azoarcus,(Bordetella,Bordetella)100)100)100)100);
(Streptococcus,((Treponema,Xanthomonas)54,(Streptomyces,Streptomyces)100)100);
(Clostridium,(Nostos,((Leptospira,Thermosynechococcus)96,(((Agrobacterium,Sinorhizobium)100,(Bartonella,Bartonella)100)99,(Caulobacter,((Rickettsia,(Rickettsia,Rickettsia)87)100,(Anaplasma,(Ehrlichia,(Wolbachia,Wolbachia)100)41)95)22)22)62)98)98);
(Bdellovibrio,(Methylococcus,(Burcholderia,Burcholderia)60)60);
(Geobacillus,((((Bacteroides,Bacteroides)88,Porphyromonas)100,Chlorobium)97,Neisseria));
((Bacteroides,Bacteroides)100,(Photorhabdus,(Xanthomonas,Xanthomonas)100)100);
(Thermotoga,(Leptospira,(Bdellovibrio,(Pirellula,Pirellula)100)41)41);
(Clostridium,(((Bacillus,Bacillus)52,Bacillus)69,Oceanobacillus));
((Methanobacterium,Methanobacterium)100,(Bradyrhizobium,((Bdellovibrio,(Leptospira,Clostridium)84)100,(Bacillus,(Buchnera,Buchnera)100)81)80)80);
((Gloeobacter,Synechosystis)100,((Francizella,Acinetobacter)63,(Deinococcus,(Ralstonia,(Xanthomonas,(Xanthomonas,Xanthomonas)83)100)83)42)42);
(((Sinorhizobium,((Brucella,Brucella)99,(Mesorhizobium,Agrobacterium)41)60)100,Rhodopseudomonas)100,(Xanthomonas,Xanthomonas));
(Idiomarina,((Streptomyces,Streptomyces)100,Nocardia));
(Deinococcus,(Bradyrhizobium,(((Sinorhizobium,Agrobacterium)99,Mesorhizobium)100,(Burcholderia,Burcholderia)100)100)100);
((Methanopyrus,Methanobacterium)84,(Bdellovibrio,((Vibrio,(Vibrio,Vibrio)94)97,(Salmonella,(Shigella,Escherichia)100)100)79)79);
(Methanopyrus,((Photorhabdus,(Nocardia,Thermosynechococcus)100)58,(Shigella,Erwinia)100)100);
(((Brucella,(Brucella,Brucella)90)100,Clostridium)96,(Picrophilus,(Thermoplasma,Thermoplasma)100)100);
(Propionibacterium,((Listeria,Listeria)44,Lactobacillus));
((Gloeobacter,Nostos)78,((Gluconobacter,Caulobacter)61,(Rhodopseudomonas,Bradyrhizobium)94)94);
((Archhaeoglobus,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)95)96)98)53,((((Bacteroides,Clostridium)40,Staphylococcus)49,(Aeropyrum,Streptomyces)47)45,(Thermoanaerobacter,(Haroarcula,Halobacterium)100)46)46);
(((Bifidobacterium,Nocardia)66,Corynebacterium)81,(Lactobacillus,(Lactobacillus,Lactobacillus)100)100);
(Legionella,(Neisseria,(Chromobacterium,(Ralstonia,(Burcholderia,Burcholderia)100)100)51)51);
(Nocardia,((((Brucella,Brucella)89,Brucella)100,Erwinia)63,Silicibacter));
((Bradyrhizobium,Gluconobacter)49,(((Sinorhizobium,Legionella)91,Zymomonas)74,(Burcholderia,Burcholderia)100)100);
(Aquifex,(((Sinorhizobium,Agrobacterium)82,(Mesorhizobium,((Brucella,Brucella)97,Brucella)100)68)81,((Gluconobacter,Zymomonas)67,(Rhodopseudomonas,Bradyrhizobium)99)78)78);
((((Pseudomonas,Pseudomonas)56,Pseudomonas)100,Chromobacterium)100,(Mesorhizobium,(Bradyrhizobium,Caulobacter)96)96);
(Burcholderia,(Xanthomonas,(Yersinia,Yersinia)100)100);
(Methanobacterium,((Mycoplasma,Streptococcus)55,Helicobacter));
(Symbiobacterium,(((Bacillus,Bacillus)100,Geobacillus)100,(Nocardia,(Mycobacterium,Mycobacterium)100)100)100);
(((Nitrosomonas,(Bacteroides,Desulfovibrio)100)51,((Yersinia,Yersinia)100,(Brucella,(Brucella,Brucella)45)100)80)100,(Staphylococcus,Staphylococcus));
(Agrobacterium,(Synechococcus,(Thermosynechococcus,Synechosystis)64)64);
(Clostridium,(((Treponema,Gloeobacter)49,Sinorhizobium)84,Bifidobacterium));
(Pyrobaculum,(Methanosarcina,((Methanobacterium,(Methanobacterium,Methanobacterium)92)88,(Pyrococcus,(Pyrococcus,Pyrococcus)90)99)81)81);
(Helicobacter,((Pseudomonas,Acinetobacter)68,(Erwinia,Vibrio)95)95);
((Pseudomonas,Burcholderia)100,(Streptomyces,Streptomyces));
(Clostridium,(((Streptomyces,Streptomyces)100,Nocardia)100,Bacillus));
((Burcholderia,Burcholderia)100,(Legionella,Idiomarina));
(Methanopyrus,(Brucella,(Brucella,Brucella)67)67);
(Nostos,(Azoarcus,(Streptomyces,Streptomyces)99)99);
(Desulfovibrio,(Caulobacter,(Burcholderia,Burcholderia)100)100);
(Azoarcus,(((Thermoplasma,Thermoplasma)86,Picrophilus)100,Sulforobus));
(Pyrobaculum,(((((Pyrococcus,Pyrococcus)96,Pyrococcus)73,Thermococcus)100,(Methanopyrus,Aeropyrum)71)90,(Sulforobus,Sulforobus)100)100);
(Ralstonia,((Photorhabdus,(Yersinia,Yersinia)100)94,(Salmonella,Escherichia)100)100);
((Pyrococcus,Thermococcus)98,(Clostridium,Thermoanaerobacter));
(Deinococcus,(Oceanobacillus,(Bacillus,Bacillus)100)100);
(Lactococcus,((Chromobacterium,Burcholderia)95,Deinococcus));
((((Lactobacillus,Streptococcus)60,Streptococcus)94,Listeria)100,(Pirellula,Pirellula));
(Aquifex,((Geobacter,Dehalococcoides)76,Bacteroides));
((((((((((Yersinia,Yersinia)100,Erwinia)53,Photorhabdus)96,(Salmonella,(Escherichia,Shigella)89)100)100,((Pasteurella,Mannheimia)71,Haemophilus)100)88,(Vibrio,(Vibrio,(Vibrio,Vibrio)85)100)100)98,(Idiomarina,Shewanella)88)97,(Pseudomonas,(Pseudomonas,Pseudomonas)100)100)91,(Methylococcus,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)95)95)100)56)100,((Bordetella,(Bordetella,Bordetella)92)100,(Burcholderia,Burcholderia)100)100);
((Bacillus,Bacillus)85,((Nostos,Coxiella)46,(Bacillus,(Nocardia,Streptomyces)100)65)65);
((Acinetobacter,Legionella)100,(Silicibacter,Mesorhizobium));
(Bradyrhizobium,(Salmonella,(Yersinia,Yersinia)100)100);
((Pseudomonas,(Shewanella,Idiomarina)99)90,((Halobacterium,Haroarcula)100,((((Pyrococcus,Pyrococcus)81,Pyrococcus)78,Thermococcus)100,(Aeropyrum,((Sulforobus,Sulforobus)100,(Picrophilus,(Thermoplasma,Thermoplasma)94)100)93)50)88)88);
(((Mesorhizobium,Silicibacter)95,(Acinetobacter,Pseudomonas)100)100,(Methanobacterium,Methanopyrus));
(Burcholderia,(((Pseudomonas,Pseudomonas)46,Pseudomonas)95,Acinetobacter));
((((Halobacterium,Haroarcula)100,(Methanosarcina,Methanosarcina)100)60,Archhaeoglobus)100,((Xanthomonas,Ralstonia)100,(Pirellula,Pirellula)100)100);
(Thermotoga,((Helicobacter,Helicobacter)61,Sinorhizobium));
(Bdellovibrio,(Corynebacterium,(Propionibacterium,Deinococcus)86)86);
((Streptomyces,Streptomyces)83,((Leifsonia,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)99)37,(Deinococcus,Thermus)100)100);
(Symbiobacterium,(((Streptomyces,Azoarcus)76,Nocardia)100,Geobacillus));
(Bacillus,((((Bacillus,Bacillus)100,((Bacillus,Bacillus)98,Oceanobacillus)28)35,Geobacillus)11,((Staphylococcus,Staphylococcus)100,((Listeria,Listeria)100,(((((((Streptococcus,(Streptococcus,Streptococcus)45)51,Streptococcus)49,Streptococcus)52,(Lactococcus,Enterococcus)33)33,Lactobacillus)64,Lactobacillus)81,(Mycoplasma,(Mycoplasma,Ureaplasma)100)100)58)55)53)53);
(Leifsonia,(Deinococcus,((Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)88,(Propionibacterium,(Corynebacterium,(Corynebacterium,Corynebacterium)99)100)48)87)87);
(Symbiobacterium,(Bacillus,(((Geobacillus,(Bacillus,Bacillus)100)46,(Bacillus,Bacillus)100)42,(Staphylococcus,Staphylococcus)100)75)75);
(Thermoanaerobacter,((((Bacillus,Bacillus)95,(Geobacillus,Bacillus)76)67,Bacillus)88,Oceanobacillus));
((Bradyrhizobium,Rhodopseudomonas)100,((Methylococcus,Nitrosomonas)75,(Burcholderia,Burcholderia)100)100);
(Desulfotalea,(((Chlamydophila,Chlamydophila)63,(Chlamydophila,Chlamydophila)80)100,Parachlamydia));
(Desulfotalea,((((((Erwinia,(Photorhabdus,(Yersinia,Yersinia)100)50)27,(Salmonella,(Escherichia,Shigella)100)100)98,(Vibrio,Vibrio)100)84,Mannheimia)100,Pseudomonas)97,(Agrobacterium,(Mesorhizobium,Pseudomonas)100)96)96);
(Corynebacterium,(Methylococcus,((Desulfovibrio,Bradyrhizobium)75,(Shewanella,(Helicobacter,Helicobacter)100)100)83)83);
(Streptomyces,((Agrobacterium,Yersinia)63,(Escherichia,Shigella)100)100);
((Pseudomonas,(Agrobacterium,Ralstonia)75)94,(Mesorhizobium,Sinorhizobium));
(Methylococcus,(Methanopyrus,(((Methanobacterium,(Methanobacterium,Methanobacterium)100)78,Archhaeoglobus)56,(Methanosarcina,Methanosarcina)100)98)98);
(Bacillus,(((((Vibrio,Vibrio)92,Vibrio)100,(Pasteurella,Haemophilus)100)97,Azoarcus)92,Sinorhizobium));
(Archhaeoglobus,(Desulfovibrio,((Geobacter,(Pseudomonas,Pseudomonas)99)97,(Shewanella,(Vibrio,Vibrio)100)89)51)51);
(Symbiobacterium,(Bacillus,(((Oceanobacillus,Bacillus)43,Geobacillus)24,(Bacillus,Bacillus)100)56)56);
(Chromobacterium,(Xanthomonas,(Xylella,Xanthomonas)64)64);
(Oceanobacillus,((Nocardia,(Streptomyces,Streptomyces)100)81,(Bradyrhizobium,(Bacillus,((Vibrio,(Vibrio,Vibrio)69)100,(Wolinella,(Bordetella,Bordetella)100)53)27)42)77)77);
(Methanobacterium,(Mesorhizobium,(Bradyrhizobium,Rhodopseudomonas)100)100);
((Streptomyces,Streptomyces)100,((Bacillus,Bacillus)99,(Bacillus,Bacillus)100)100);
(((((Brucella,Brucella)74,Brucella)100,(Mesorhizobium,Agrobacterium)52)72,Bdellovibrio)100,(Corynebacterium,(Mycobacterium,Mycobacterium)100)100);
(Methanobacterium,(((((Xanthomonas,Xanthomonas)90,Xanthomonas)100,Xylella)100,(Shewanella,(Vibrio,Vibrio)100)88)56,(Pirellula,Pirellula)100)100);
((Methanosarcina,Methanobacterium)88,(Bacteroides,(Helicobacter,(Lactobacillus,Lactobacillus)100)80)80);
(Clostridium,((Lactococcus,Enterococcus)100,Streptococcus));
(Chromobacterium,(Mannheimia,(Photorhabdus,(Salmonella,(Shigella,Escherichia)100)98)56)56);
((((Vibrio,Vibrio)97,Vibrio)96,Sinorhizobium)100,(Bacillus,Bacillus));
(Clostridium,(Lactobacillus,(Streptomyces,(Listeria,Streptococcus)100)100)100);
((Azoarcus,Geobacter)100,(Pirellula,Pirellula));
(Synechosystis,(Methylococcus,((Pseudomonas,(Vibrio,Vibrio)100)87,(Pirellula,Pirellula)100)67)67);
((Sinorhizobium,Agrobacterium)96,(Nocardia,Streptomyces));
(Azoarcus,((Streptococcus,Streptococcus)100,Bacillus));
(Methanobacterium,(((Clostridium,Clostridium)72,Clostridium)100,Pyrobaculum));
(Symbiobacterium,(Deinococcus,(Geobacillus,(Bacillus,Bacillus)100)81)81);
(Gloeobacter,((Pirellula,Pirellula)100,(Streptomyces,Streptomyces)100)100);
(Bacillus,(Ralstonia,(Propionibacterium,(Bordetella,Bordetella)100)74)74);
(Nostos,(Parachlamydia,(Pirellula,Pirellula)100)100);
(((((Xanthomonas,Xanthomonas)65,Xanthomonas)100,Shewanella)61,Idiomarina)100,(Prochlorococcus,Synechococcus));
(Bordetella,((Mycobacterium,Leifsonia)41,Nocardia));
(Pseudomonas,((Burcholderia,Burcholderia)100,(Ralstonia,(Chromobacterium,Azoarcus)99)61)61);
(Clostridium,(((Porphyromonas,(Bacteroides,Bacteroides)98)80,Symbiobacterium)100,(Corynebacterium,Corynebacterium)100)100);
(Campylobacter,(Nocardia,(Corynebacterium,Corynebacterium)60)60);
(Picrophilus,((Synechosystis,Bdellovibrio)52,(Mycobacterium,Mycobacterium)100)100);
(((Streptococcus,((Streptococcus,Streptococcus)21,Streptococcus)31)100,(Lactobacillus,(Lactococcus,Enterococcus)100)98)100,(Borrelia,Borrelia));
(Methanosarcina,(Staphylococcus,(Streptococcus,(Mycobacterium,Mycobacterium)100)100)100);
(Fusobacterium,((Porphyromonas,Symbiobacterium)66,Thermoanaerobacter));
(((Streptomyces,Streptomyces)100,Propionibacterium)100,(Bacteroides,Bacteroides));
(Leptospira,(Silicibacter,((Agrobacterium,(Mesorhizobium,Sinorhizobium)74)85,(Bradyrhizobium,Rhodopseudomonas)100)56)56);
(Oceanobacillus,(((Thermus,Deinococcus)54,Bradyrhizobium)84,Caulobacter));
(Aquifex,(((Oceanobacillus,(Staphylococcus,Staphylococcus)98)48,Geobacillus)100,Thermus));
((Clostridium,Clostridium)87,((Streptomyces,Bacillus)86,(Bacillus,Bacillus)100)100);
(Gloeobacter,(((((Xanthomonas,Xanthomonas)95,(Pseudomonas,Pseudomonas)90)75,Acinetobacter)100,Gluconobacter)90,Deinococcus));
(Thermus,(((Sinorhizobium,Agrobacterium)99,Mesorhizobium)99,(Bradyrhizobium,Rhodopseudomonas)100)100);
(Chlorobium,(Picrophilus,(Thermoplasma,Thermoplasma)100)100);
(Prochlorococcus,(Bdellovibrio,(((Gluconobacter,Caulobacter)50,Pseudomonas)100,(((Yersinia,Yersinia)100,(Erwinia,(Photorhabdus,(Salmonella,(Shigella,Escherichia)100)100)37)52)100,(Streptomyces,Streptomyces)100)67)70)70);
(Desulfovibrio,(Yersinia,(Vibrio,(Pseudomonas,(Bordetella,Bordetella)100)94)61)61);
((Bordetella,(Bordetella,Bordetella)72)100,(Zymomonas,Gluconobacter));
(Dehalococcoides,((Clostridium,Thermoanaerobacter)31,Clostridium));
(Haroarcula,(((Bordetella,Bordetella)89,Bordetella)100,Bradyrhizobium));
(Desulfotalea,(Wolinella,(Silicibacter,(Yersinia,Yersinia)100)29)29);
(Gloeobacter,((Desulfovibrio,Geobacter)85,(Streptomyces,Streptomyces)100)100);
((Agrobacterium,Mesorhizobium)100,(Pirellula,Pirellula));
((Thermosynechococcus,Prochlorococcus)56,(Helicobacter,(Vibrio,(Campylobacter,((Bacteroides,Acinetobacter)14,((Sinorhizobium,Bradyrhizobium)70,(Buchnera,(Blochmannia,(Photorhabdus,(Yersinia,Yersinia)100)71)30)92)14)28)18)24)24);
(Nostos,(Pseudomonas,(Ralstonia,Azoarcus)93)93);
(Clostridium,(Streptococcus,(Enterococcus,(Bacillus,Bacillus)100)100)100);
(((Erwinia,Escherichia)53,(Bordetella,Pseudomonas)100)100,(Bacillus,Bacillus));
(Thermosynechococcus,(Azoarcus,(Acinetobacter,(Yersinia,Yersinia)100)52)52);
(Bradyrhizobium,(Pseudomonas,(Chromobacterium,(Burcholderia,Burcholderia)100)85)85);
((Lactococcus,Bacillus)90,(((Brucella,Brucella)63,Brucella)100,(Burcholderia,Burcholderia)100)100);
(Thermotoga,(Clostridium,(Thermoanaerobacter,(Listeria,Listeria)100)63)63);
(((Clostridium,Clostridium)61,Clostridium)92,((Bacteroides,Bacteroides)100,(Bacillus,Bacillus)100)100);
(((Bordetella,Bordetella)100,Bordetella)100,(Pseudomonas,(Xylella,(Yersinia,Yersinia)100)81)81);
(Archhaeoglobus,(Bacillus,(Propionibacterium,Dehalococcoides)54)54);
((Nitrosomonas,Xanthomonas)100,(Pirellula,Pirellula));
(Treponema,(Geobacter,(Caulobacter,(Bdellovibrio,((Mesorhizobium,(Brucella,(Brucella,Brucella)81)100)99,(Pseudomonas,Pseudomonas)100)51)62)80)80);
((((Bacillus,Enterococcus)34,(Helicobacter,(Staphylococcus,Bacillus)81)38)43,(Legionella,(Photorhabdus,Streptococcus)33)21)60,(Bacillus,(Bacillus,Bacillus)100)100);
((Corynebacterium,Nocardia)85,((Bacillus,(Bacillus,Oceanobacillus)100)99,(Bacillus,Bacillus)100)100);
(Clostridium,((Staphylococcus,(Phytoplasma,Enterococcus)35)66,(Lactobacillus,((Lactobacillus,Lactobacillus)100,(((((Streptococcus,Streptococcus)44,Streptococcus)21,Streptococcus)15,Lactococcus)42,((Vibrio,(Vibrio,Vibrio)55)100,(Bacillus,Bacillus)100)100)85)44)33)33);
(((Bordetella,Bordetella)72,Bordetella)100,(Vibrio,(Vibrio,Vibrio)51)51);
(Thermotoga,((Bacillus,Propionibacterium)53,Staphylococcus));
(((Escherichia,Shigella)100,Erwinia)100,(Rickettsia,Rickettsia));
(Clostridium,(Bacillus,(Desulfotalea,(Bacillus,Bacillus)100)100)100);
(Pyrobaculum,(((Thermoplasma,Thermoplasma)95,Picrophilus)100,(Methanobacterium,Methanobacterium)100)100);
(((((Photorhabdus,(Erwinia,(Yersinia,Yersinia)100)95)46,Salmonella)53,Vibrio)100,Corynebacterium)100,(Nostos,Synechococcus));
(Pyrobaculum,((((((Pyrococcus,Pyrococcus)73,Pyrococcus)92,Thermococcus)100,Methanopyrus)54,Archhaeoglobus)52,(Aeropyrum,(Sulforobus,Sulforobus)100)83)83);
(Deinococcus,(((Helicobacter,Helicobacter)39,Wolinella)64,Campylobacter));
(Bacillus,((Mycobacterium,Mycobacterium)100,(Streptomyces,Streptomyces)100)100);
(Nocardia,((Xanthomonas,(Shewanella,Idiomarina)100)69,(Pseudomonas,(Burcholderia,Burcholderia)100)80)80);
(Pseudomonas,((Brucella,Brucella)27,Brucella));
((Bacillus,Bacillus)91,(Streptomyces,Pseudomonas));
(Clostridium,(Bacillus,(Staphylococcus,Bacillus)61)61);
((Pirellula,Pirellula)17,(Pyrococcus,Pyrococcus));
(Synechococcus,((Helicobacter,Helicobacter)57,(Campylobacter,Wolinella)38)38);
(((Streptomyces,Streptomyces)100,Corynebacterium)100,(Bacillus,Bacillus));
(Thermoplasma,(Parachlamydia,((Agrobacterium,Mesorhizobium)91,(Mycobacterium,Mycobacterium)100)100)100);
(Mycoplasma,(((Brucella,(Brucella,Brucella)64)100,Mesorhizobium)44,Treponema));
(Aquifex,((((Pyrococcus,Pyrococcus)73,Pyrococcus)95,Thermococcus)100,Methanobacterium));
((((((Bordetella,Bordetella)68,Bordetella)100,(Burcholderia,Burcholderia)100)93,Ralstonia)100,(Acinetobacter,Silicibacter)60)100,(Pirellula,Pirellula));
((((Lactococcus,Lactobacillus)50,Thermoanaerobacter)52,(Listeria,Listeria)100)99,(Picrophilus,Sulforobus));
(Aquifex,(Idiomarina,(Streptomyces,(Treponema,Deinococcus)65)62)62);
(Clostridium,(Bdellovibrio,(Porphyromonas,Dehalococcoides)55)55);
(Caulobacter,(Chromobacterium,(Silicibacter,(Erwinia,(Xanthomonas,(Salmonella,(Shigella,Escherichia)100)100)74)77)100)100);
((((Streptomyces,Streptomyces)100,Nocardia)68,Propionibacterium)100,(Bdellovibrio,(Azoarcus,Ralstonia)98)98);
(Treponema,(Silicibacter,(((((((Idiomarina,(Caulobacter,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)73)98)100)37)10,(Gluconobacter,((Rhodopseudomonas,Bradyrhizobium)100,(Mesorhizobium,((Agrobacterium,Sinorhizobium)99,((Bartonella,Bartonella)100,((Brucella,Brucella)67,Brucella)100)51)44)93)66)18)3,(Pseudomonas,(Pseudomonas,Pseudomonas)99)100)2,((Rickettsia,Legionella)28,Acinetobacter)4)8,Methylococcus)12,(Shewanella,((Vibrio,(Vibrio,(Vibrio,Vibrio)36)60)100,((((Erwinia,(Yersinia,Yersinia)100)50,(Salmonella,(Shigella,Escherichia)100)99)29,Photorhabdus)100,(Haemophilus,(Mannheimia,Pasteurella)70)100)44)96)34)9,(Neisseria,(Azoarcus,(Chromobacterium,((Ralstonia,(Burcholderia,Burcholderia)100)85,(Bordetella,(Bordetella,Bordetella)82)100)84)39)21)96)16)16);
(Rhodopseudomonas,(((Burcholderia,Burcholderia)100,Ralstonia)53,(Bordetella,Bordetella)100)100);
((Azoarcus,(Pyrobaculum,Desulfovibrio)77)100,(Methanosarcina,Methanosarcina));
(Dehalococcoides,(Chlorobium,(Geobacter,(Bacteroides,Bacteroides)100)44)44);
(Bacillus,((Thermoplasma,Thermoplasma)99,Picrophilus));
(Azoarcus,((Bradyrhizobium,Rhodopseudomonas)100,Silicibacter));
(Fusobacterium,((Campylobacter,(Wolinella,Helicobacter)100)99,(Staphylococcus,Staphylococcus)100)100);
(Chlorobium,(Methylococcus,(((((((Yersinia,Yersinia)100,(Salmonella,(Escherichia,Shigella)84)90)39,Erwinia)71,(Photorhabdus,(Buchnera,Buchnera)100)29)72,(Mannheimia,(Haemophilus,Pasteurella)67)100)16,(Vibrio,(Vibrio,(Vibrio,Vibrio)81)46)62)25,((Idiomarina,Acinetobacter)28,(Shewanella,(Pseudomonas,(Pseudomonas,Pseudomonas)75)99)34)23)88)88);
(Halobacterium,((((Bdellovibrio,Caulobacter)82,Shewanella)39,Chromobacterium)70,Agrobacterium));
(Gloeobacter,(Rhodopseudomonas,(Gluconobacter,(Erwinia,(Pseudomonas,(Xanthomonas,Xanthomonas)96)100)64)56)56);
(Synechosystis,(Pseudomonas,(Idiomarina,((Bordetella,(Bordetella,Bordetella)66)100,((Chromobacterium,Vibrio)80,(Pirellula,Pirellula)100)68)40)47)47);
(((Rickettsia,Rickettsia)66,Rickettsia)100,(Pseudomonas,Ralstonia));
(Symbiobacterium,(Oceanobacillus,(Bacillus,Bacillus)100)100);
((((Brucella,(Brucella,Brucella)100)100,Gluconobacter)40,(Mesorhizobium,Bradyrhizobium)68)100,(Burcholderia,Burcholderia));
(Enterococcus,(Desulfotalea,(Escherichia,(Silicibacter,(Mesorhizobium,(Bordetella,Bordetella)100)100)100)100)100);
(Bradyrhizobium,((Bordetella,Bordetella)78,Bordetella));
((Gloeobacter,(Synechosystis,Thermosynechococcus)84)97,(Methylococcus,((Mesorhizobium,(Erwinia,(Acinetobacter,(Pseudomonas,Pseudomonas)99)71)45)31,((Azoarcus,Ralstonia)88,(Rhodopseudomonas,Bradyrhizobium)100)30)85)85);
((((((((Halobacterium,Haroarcula)99,(Methanosarcina,Methanosarcina)100)94,(Methanopyrus,Pyrococcus)56)53,Methanobacterium)44,Archhaeoglobus)86,(Thermoplasma,Thermoplasma)100)34,(Aeropyrum,(Sulforobus,Sulforobus)100)62)100,((Treponema,Treponema)99,(Borrelia,Borrelia)100)100);
(Thermosynechococcus,((Gloeobacter,(Legionella,Nostos)41)74,Chromobacterium));
((Nostos,Geobacter)100,((Archhaeoglobus,(Methanosarcina,Methanosarcina)100)86,(Pyrococcus,(Methanobacterium,Methanobacterium)100)88)88);
(Geobacter,((Mesorhizobium,Coxiella)42,(Agrobacterium,Bdellovibrio)35)35);
(Archhaeoglobus,(((Desulfovibrio,Chlorobium)35,Desulfotalea)100,(Dehalococcoides,(Thermus,Leptospira)100)37)37);
(Mannheimia,(((((Brucella,Brucella)65,Brucella)100,Agrobacterium)98,Sinorhizobium)100,Mesorhizobium));
(((Thermoplasma,Thermoplasma)91,Picrophilus)100,(Corynebacterium,Corynebacterium));
((Mesorhizobium,Mycobacterium)100,(Pirellula,Pirellula));
(Rhodopseudomonas,(Nocardia,(Streptomyces,Streptomyces)88)88);
(Streptomyces,((Agrobacterium,Sinorhizobium)100,Bradyrhizobium));
((Bdellovibrio,Neisseria)100,(Treponema,Treponema));
(Fusobacterium,(Clostridium,(Clostridium,((((((((Xanthomonas,(Xanthomonas,Xanthomonas)81)100,(Ralstonia,(Pseudomonas,(Pseudomonas,Pseudomonas)71)97)80)100,(Burcholderia,Burcholderia)100)28,Chromobacterium)36,(Rhodopseudomonas,Bradyrhizobium)98)42,(Nocardia,Streptomyces)88)100,(Photorhabdus,(Escherichia,Salmonella)91)100)97,(Clostridium,(Enterococcus,(Listeria,Listeria)100)97)99)39)50)50);
(Nitrosomonas,(((Vibrio,(Shewanella,Vibrio)53)100,Legionella)69,Idiomarina));
(Acinetobacter,((Bordetella,Bordetella)100,Bordetella));
(Pseudomonas,(Gluconobacter,(Mesorhizobium,((Bradyrhizobium,Rhodopseudomonas)100,(Sinorhizobium,Agrobacterium)100)48)61)61);
(Leptospira,((Burcholderia,Burcholderia)100,Ralstonia));
(((Thermosynechococcus,Synechosystis)71,(Synechococcus,Prochlorococcus)99)95,(Pseudomonas,(Burcholderia,Burcholderia)100)100);
(Gluconobacter,((((Xanthomonas,Xanthomonas)74,Xanthomonas)100,Xylella)100,Methylococcus));
(Symbiobacterium,(Methylococcus,(Dehalococcoides,(Lactobacillus,Chlorobium)34)20)20);
(Aeropyrum,((Pyrococcus,Thermotoga)57,(Synechosystis,Gloeobacter)100)100);
(Wolinella,(((((Vibrio,Vibrio)88,Vibrio)67,Vibrio)99,(((Erwinia,(Salmonella,(Escherichia,Shigella)100)100)70,Photorhabdus)51,(Yersinia,Yersinia)100)100)83,((Acinetobacter,Shewanella)10,(Chromobacterium,((Pseudomonas,(Pseudomonas,Pseudomonas)41)100,((Methylococcus,Azoarcus)73,((Ralstonia,(Burcholderia,Burcholderia)100)93,(Bordetella,(Bordetella,Bordetella)78)100)97)95)31)38)45)45);
(((Nocardia,Deinococcus)96,(Xanthomonas,Xanthomonas)100)100,(Pirellula,Pirellula));
((Pyrococcus,Pyrococcus)100,(Mycoplasma,Mycoplasma));
(((Helicobacter,Helicobacter)97,Campylobacter)100,(Rickettsia,Rickettsia));
(Neisseria,(Pseudomonas,((Shewanella,Idiomarina)61,((Vibrio,(Vibrio,Vibrio)83)99,(Acinetobacter,(Escherichia,Erwinia)100)51)42)83)83);
(Symbiobacterium,(((Photorhabdus,Erwinia)100,Streptomyces)100,(Pirellula,Pirellula)100)100);
(Clostridium,(Geobacillus,(Bacillus,Bacillus)100)100);
(Thermotoga,((Enterococcus,(Legionella,Coxiella)92)78,(Dehalococcoides,((Porphyromonas,Acinetobacter)100,(Ralstonia,(Burcholderia,Burcholderia)100)100)41)48)48);
((((Azoarcus,Xanthomonas)77,(Xylella,Xanthomonas)98)100,Bordetella)100,(Salmonella,(Erwinia,Photorhabdus)91)91);
(Clostridium,(((Oceanobacillus,(Bacillus,Bacillus)100)85,Clostridium)98,(Enterococcus,Streptococcus)99)99);
((Symbiobacterium,Chromobacterium)98,(Haroarcula,Halobacterium));
(Fusobacterium,(Picrophilus,(Pyrococcus,Pyrococcus)100)100);
(Synechosystis,((Mycobacterium,Legionella)100,Rhodopseudomonas));
((Pirellula,Pirellula)100,(Deinococcus,Bradyrhizobium));
(Thermotoga,(((((((Bartonella,Bartonella)100,(((Azoarcus,Zymomonas)31,Silicibacter)31,Caulobacter)53)26,(Brucella,(Brucella,Brucella)30)100)1,(Rhodopseudomonas,Bradyrhizobium)96)1,Mesorhizobium)18,(Agrobacterium,Sinorhizobium)64)100,(Streptomyces,Thermoanaerobacter)83)83);
((Thermococcus,Pyrococcus)91,(((((Methanopyrus,Methylococcus)57,(Thermosynechococcus,Archhaeoglobus)68)22,Thermoanaerobacter)22,(Methanosarcina,Methanosarcina)100)40,(Pyrobaculum,(Sulforobus,Sulforobus)99)100)100);
((Silicibacter,Legionella)100,(Sulforobus,Sulforobus));
(((Azoarcus,Geobacter)95,Desulfovibrio)100,(Methanosarcina,Methanosarcina));
(Nocardia,(((Rhodopseudomonas,Silicibacter)88,Geobacter)100,Azoarcus));
(Fusobacterium,((Bacteroides,Bacteroides)64,Deinococcus));
(Synechosystis,(Methylococcus,(Mesorhizobium,Sinorhizobium)43)43);
(((((((((Vibrio,(Vibrio,(Vibrio,Vibrio)61)87)95,((Salmonella,(Shigella,Escherichia)100)99,(Erwinia,(Photorhabdus,(Yersinia,Yersinia)100)41)37)93)56,Shewanella)56,(Neisseria,((Azoarcus,((Bordetella,(Bordetella,Bordetella)80)100,(Ralstonia,(Burcholderia,Burcholderia)100)56)53)36,(Methylococcus,Chromobacterium)21)94)45)25,((Pseudomonas,Pseudomonas)47,Pseudomonas)99)25,(Haemophilus,(Mannheimia,Pasteurella)55)99)29,(Buchnera,Buchnera)96)35,Acinetobacter)99,(Ehrlichia,(Anaplasma,(Rickettsia,(Rickettsia,Rickettsia)68)100)69)69);
(Methylococcus,((Azoarcus,Chromobacterium)47,(Nitrosomonas,Pseudomonas)85)85);
((((Xanthomonas,Xanthomonas)99,Xanthomonas)100,Xylella)100,(Ralstonia,(Bordetella,(Bordetella,Bordetella)87)100)100);
(Thermotoga,(Leptospira,(Pirellula,Pirellula)100)100);
(Mesorhizobium,((Caulobacter,Vibrio)42,Yersinia));
((Wigglesworthia,(Photorhabdus,(((Salmonella,(Escherichia,Shigella)100)100,Erwinia)29,(Yersinia,Yersinia)100)47)84)76,((Bordetella,(Bordetella,Bordetella)94)100,((Chromobacterium,Nitrosomonas)30,(Ralstonia,(Burcholderia,Burcholderia)100)27)65)65);
(Rhodopseudomonas,((Idiomarina,Shewanella)100,(Pseudomonas,(Vibrio,(Salmonella,Escherichia)100)87)64)64);
((Pirellula,Pirellula)100,(Streptomyces,Streptomyces));
((Pseudomonas,(Pseudomonas,Pseudomonas)64)100,((Ralstonia,Burcholderia)83,(Azoarcus,(Bordetella,(Bordetella,Bordetella)77)100)50)50);
(((((Idiomarina,(Vibrio,(Vibrio,Vibrio)89)97)38,((Yersinia,Yersinia)100,(Salmonella,(Shigella,Escherichia)100)73)87)64,Wigglesworthia)65,Xylella)100,(Bacillus,(Geobacillus,(Bacillus,Bacillus)100)62)62);
(Pyrobaculum,(Aeropyrum,((Halobacterium,Methanosarcina)100,(Nanoarchaeum,(Thermoplasma,Thermoplasma)100)39)52)52);
(Clostridium,((Chromobacterium,((Ralstonia,(Burcholderia,Burcholderia)100)71,((Photorhabdus,(Yersinia,Yersinia)100)94,(Salmonella,(Shigella,Escherichia)100)100)97)21)31,(Acinetobacter,(Bartonella,Bartonella)100)51)51);
(Fusobacterium,(Treponema,(Clostridium,((((Porphyromonas,Synechosystis)37,Propionibacterium)23,(Gluconobacter,Silicibacter)75)65,(Oceanobacillus,(Staphylococcus,Staphylococcus)100)91)36)32)32);
(Methanosarcina,((Mesorhizobium,Sinorhizobium)100,(Pirellula,Pirellula)100)100);
(((((Agrobacterium,(Mesorhizobium,Zymomonas)61)57,Acinetobacter)58,(Bradyrhizobium,Legionella)51)98,Erwinia)100,(Bacillus,Bacillus));
(Mycoplasma,(((Shewanella,Vibrio)49,(Mannheimia,Erwinia)99)100,Porphyromonas));
(((((((((((((Nocardia,((Corynebacterium,(Corynebacterium,Corynebacterium)63)100,((Mycobacterium,Mycobacterium)99,Mycobacterium)100)28)29,(Streptomyces,Streptomyces)100)41,((Bifidobacterium,(Tropheryma,Leifsonia)72)63,Propionibacterium)77)100,(((((Caulobacter,(((Zymomonas,Silicibacter)38,(Mesorhizobium,((Sinorhizobium,Agrobacterium)99,((Bartonella,Bartonella)100,(Brucella,(Brucella,Brucella)83)83)83)19)60)16,(Bradyrhizobium,Rhodopseudomonas)100)21)38,Gluconobacter)80,(((Coxiella,Francizella)17,Legionella)6,((Methylococcus,(Nitrosomonas,(((((Bordetella,Bordetella)58,Bordetella)100,(Ralstonia,(Burcholderia,Burcholderia)100)94)81,Azoarcus)52,(Neisseria,Chromobacterium)87)79)100)15,((((Pseudomonas,(Pseudomonas,Pseudomonas)80)100,Acinetobacter)47,(Shewanella,(((Blochmannia,Wigglesworthia)66,Idiomarina)14,((((Haemophilus,Pasteurella)65,Mannheimia)100,((Vibrio,Vibrio)78,(Vibrio,Vibrio)79)97)61,((Buchnera,Buchnera)95,((Yersinia,Yersinia)96,((Erwinia,Photorhabdus)8,(Shigella,(Escherichia,Salmonella)68)82)51)83)25)46)47)95)37,((Xanthomonas,Xanthomonas)33,(Xylella,Xanthomonas)18)100)28)2)89)32,Bdellovibrio)2,((Desulfovibrio,(Campylobacter,(Wolinella,(Helicobacter,Helicobacter)60)95)100)18,(Desulfotalea,Geobacter)23)5)2)2,((Parachlamydia,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)56)81)100)98,(Pirellula,Pirellula)100)24),(((Porphyromonas,(Bacteroides,Bacteroides)100)100,Chlorobium)46,((Rickettsia,(Rickettsia,Rickettsia)95)100,((Wolbachia,Wolbachia)100,(Anaplasma,Ehrlichia)100)99)25)5)1,(((Symbiobacterium,(Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)37)100)75)82,((((Bacillus,Bacillus)100,((Listeria,Listeria)100,((Enterococcus,(Lactococcus,(Streptococcus,((Streptococcus,Streptococcus)100,(Streptococcus,Streptococcus)31)62)50)100)96,(Lactobacillus,(Lactobacillus,Lactobacillus)98)65)57)13)4,((Oceanobacillus,(Staphylococcus,Staphylococcus)100)39,(Bacillus,(Bacillus,Bacillus)100)22)9)18,Geobacillus)86)28,((Phytoplasma,((Mycoplasma,(Mycoplasma,Mycoplasma)69)100,(Mycoplasma,(((Mycoplasma,(Mycoplasma,Mycoplasma)100)99,Ureaplasma)55,Mycoplasma)100)68)89)76,(Leptospira,((Borrelia,Borrelia)100,(Treponema,Treponema)100)99)19)6)1)7,(Aquifex,Thermotoga)35)4,Fusobacterium)4,Dehalococcoides)13,(Gloeobacter,(Thermosynechococcus,((Synechococcus,Prochlorococcus)100,(Nostos,Synechosystis)34)41)60)100)58,(Deinococcus,Thermus)86)100,((((Aeropyrum,(Sulforobus,Sulforobus)100)99,(Thermococcus,((Pyrococcus,Pyrococcus)67,Pyrococcus)72)100)23,((Methanopyrus,Methanobacterium)38,(((Methanosarcina,Methanosarcina)100,(Haroarcula,Halobacterium)100)94,Archhaeoglobus)47)16)22,((Methanobacterium,Methanobacterium)86,(Picrophilus,(Thermoplasma,Thermoplasma)100)100)29)29);
(((Vibrio,Vibrio)42,Vibrio)100,(Silicibacter,Agrobacterium));
(Bdellovibrio,(((Mycobacterium,Mycobacterium)100,Mycobacterium)100,(Streptomyces,Streptomyces)100)100);
((Nitrosomonas,Azoarcus)89,((Pseudomonas,Methylococcus)85,((((((((Yersinia,Yersinia)100,(Erwinia,(Salmonella,(Escherichia,Shigella)100)100)50)53,Photorhabdus)72,Mannheimia)100,(((Vibrio,Vibrio)86,Vibrio)99,Vibrio)100)96,Shewanella)90,Idiomarina)75,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)98)99)100)39)39);
(((Sulforobus,(Treponema,Thermotoga)76)37,((Aquifex,(Ralstonia,Pseudomonas)100)100,Vibrio)22)100,(Thermococcus,(Pyrococcus,Pyrococcus)65)65);
(Chromobacterium,((Xanthomonas,Xanthomonas)100,Xanthomonas));
(Fusobacterium,(((Mycoplasma,Deinococcus)86,((Rhodopseudomonas,Caulobacter)60,(Zymomonas,((Mesorhizobium,Sinorhizobium)64,((Bartonella,Bartonella)100,((Brucella,Brucella)62,Brucella)100)41)89)62)91)41,(((Mycoplasma,(Mycoplasma,Mycoplasma)72)44,(((Helicobacter,Helicobacter)48,(Campylobacter,Wolinella)33)100,((Buchnera,(Buchnera,(Wigglesworthia,Blochmannia)52)40)79,((Idiomarina,(((Pseudomonas,(Pseudomonas,Pseudomonas)56)100,Acinetobacter)30,((((Pasteurella,Mannheimia)85,Haemophilus)97,(((Escherichia,(Shigella,Salmonella)47)100,Erwinia)49,(Photorhabdus,(Yersinia,Yersinia)100)15)65)38,((Vibrio,(Vibrio,(Vibrio,Vibrio)79)65)68,Shewanella)55)17)7)20,((((Legionella,((Xanthomonas,(Xylella,(Xanthomonas,Xanthomonas)62)20)100,Methylococcus)21)4,(Nitrosomonas,((Neisseria,(Chromobacterium,Azoarcus)51)25,(((Bordetella,Bordetella)81,Bordetella)100,(Ralstonia,(Burcholderia,Burcholderia)100)63)67)50)3)5,Francizella)6,Coxiella)14)23)88)15)7,((Desulfotalea,(Leptospira,(Treponema,Treponema)94)26)11,((((Clostridium,Clostridium)77,Clostridium)91,((Desulfovibrio,Symbiobacterium)23,Bdellovibrio)19),((Thermotoga,Thermoanaerobacter)30,(((((Oceanobacillus,(Geobacillus,(((Bacillus,Bacillus)100,Bacillus)29,(Bacillus,Bacillus)51)36)51)60,((Listeria,Listeria)100,(Staphylococcus,Staphylococcus)93)41)51,(((Enterococcus,((Streptococcus,((Streptococcus,Streptococcus)40,Streptococcus)68)65,Streptococcus)88)72,Lactococcus)38,(Lactobacillus,(Lactobacillus,Lactobacillus)100)40)29)44,(Dehalococcoides,(Gloeobacter,(Nostos,(Synechosystis,((Prochlorococcus,Synechococcus)81,Thermosynechococcus)32)40)77)98)70)3,(Geobacter,((Chlorobium,(Porphyromonas,(Bacteroides,Bacteroides)100)96)9,(Pirellula,Pirellula)100)9)7)))2))7)7);
(Bradyrhizobium,((Coxiella,Photorhabdus)99,Vibrio));
(Thermotoga,(((((Vibrio,(Vibrio,Vibrio)44)96,Vibrio)91,Shewanella)95,Francizella)57,Campylobacter));
(Chlamydophila,((Chlamydophila,Leptospira)69,Chlamydophila));
((Oceanobacillus,Bacillus)73,((Chromobacterium,Shewanella)42,(Geobacter,(Azoarcus,((Burcholderia,(Nocardia,Ralstonia)31)57,((Pseudomonas,Pseudomonas)99,((Acinetobacter,((Bordetella,Bordetella)76,Bordetella)100)44,(Xanthomonas,(Xanthomonas,Xanthomonas)81)100)35)18)18)39)40)40);
(((Synechosystis,Nostos)75,Gloeobacter)100,(Pirellula,Pirellula));
(Ralstonia,(Xanthomonas,(Xanthomonas,Xanthomonas)99)99);
(Deinococcus,(Azoarcus,((Acinetobacter,Pseudomonas)80,(Escherichia,(Yersinia,Yersinia)100)100)95)95);
(Leptospira,((Burcholderia,Caulobacter)100,Nitrosomonas));
(Symbiobacterium,((((((Streptococcus,Streptococcus)57,Streptococcus)99,Streptococcus)78,Lactobacillus)59,Lactobacillus)99,Bacillus));
(Fusobacterium,(Enterococcus,(Clostridium,Clostridium)83)83);
(Silicibacter,(Vibrio,(Vibrio,Vibrio)100)100);
(((Haroarcula,(Thermotoga,Xanthomonas)36)50,Thermoanaerobacter)100,(Methanosarcina,Methanosarcina));
(Clostridium,(Lactobacillus,(Streptomyces,Streptomyces)100)100);
(Shigella,((Chromobacterium,Salmonella)100,(Burcholderia,Burcholderia)100)100);
((((Methanopyrus,(Methanobacterium,Methanobacterium)95)33,Methanobacterium)47,(Haroarcula,Archhaeoglobus)66)100,(Desulfovibrio,Geobacter));
(Pyrobaculum,(((((Methanosarcina,Methanosarcina)100,(Archhaeoglobus,(Halobacterium,Haroarcula)100)34)93,(Picrophilus,(Thermoplasma,Thermoplasma)100)100)98,Methanopyrus)100,((Nanoarchaeum,Sulforobus)76,(Pyrococcus,Pyrococcus)100)71)71);
(Leptospira,((Mannheimia,Haemophilus)91,Bdellovibrio));
(Neisseria,((Escherichia,Shigella)86,Salmonella));
(Mycoplasma,((Mycoplasma,Treponema)50,(Wolinella,Campylobacter)93)93);
(((Symbiobacterium,Deinococcus)52,Desulfovibrio)62,(Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)97)100)100);
(Desulfotalea,(Azoarcus,(Ralstonia,Methylococcus)100)100);
((Bordetella,(Bordetella,Bordetella)61)100,(Erwinia,Idiomarina));
(Halobacterium,((((((Chromobacterium,(Nitrosomonas,((Bordetella,(Bordetella,Bordetella)82)100,(Ralstonia,(Burcholderia,Burcholderia)100)92)67)41)47,Azoarcus)93,Methylococcus)99,(Wolinella,(Campylobacter,(Helicobacter,Helicobacter)80)58)100)64,(Desulfotalea,Chlorobium)99)77,(Geobacter,(Dehalococcoides,(Thermoanaerobacter,(Symbiobacterium,(Clostridium,((Bacillus,Bacillus)99,(Bacillus,Bacillus)100)100)100)59)57)77)59)59);
((((((Sinorhizobium,Agrobacterium)94,Mesorhizobium)64,(Bartonella,Bartonella)100)85,(Silicibacter,(Bradyrhizobium,Rhodopseudomonas)98)63)57,(Rickettsia,(Rickettsia,Rickettsia)94)100)100,(Bacteroides,Bacteroides));
(Nitrosomonas,(Shewanella,((Pseudomonas,(((Salmonella,(Escherichia,Shigella)100)100,Erwinia)59,Yersinia)96)41,(Vibrio,Vibrio)80)33)33);
(Rhodopseudomonas,((Pseudomonas,Bradyrhizobium)48,Nitrosomonas));
(Pyrobaculum,(Haroarcula,((Picrophilus,(Thermoplasma,Thermoplasma)100)40,((((Methanopyrus,(Methanobacterium,(Methanosarcina,Methanosarcina)100)57)17,Archhaeoglobus)18,((Methanobacterium,Methanobacterium)100,(Nanoarchaeum,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)94)57)97)53)6)8,((Deinococcus,Aeropyrum)21,(Sulforobus,Sulforobus)100)19)5)48)48);
(Staphylococcus,((Agrobacterium,Sinorhizobium)100,Deinococcus));
(Corynebacterium,(Mesorhizobium,(Pseudomonas,Caulobacter)44)44);
(Fusobacterium,(Leptospira,(Francizella,(Idiomarina,(Pirellula,Pirellula)100)57)92)92);
(Bdellovibrio,(Vibrio,(Vibrio,Vibrio)100)100);
((Chromobacterium,Bradyrhizobium)76,(Nocardia,(Streptomyces,Streptomyces)100)100);
(Lactobacillus,(Salmonella,(Yersinia,Yersinia)100)100);
(Nocardia,((Bordetella,Bordetella)28,Bradyrhizobium));
(Acinetobacter,(Propionibacterium,((Corynebacterium,(Corynebacterium,Corynebacterium)100)100,(Nocardia,(Mycobacterium,Mycobacterium)100)78)84)84);
(Symbiobacterium,(Nocardia,(Streptomyces,(Mycobacterium,Mycobacterium)100)79)79);
(Thermoanaerobacter,(Geobacillus,(Bacillus,Bacillus)100)100);
(((((((((((((Vibrio,(Vibrio,(Vibrio,Vibrio)59)66)94,((((Haemophilus,Pasteurella)47,Mannheimia)100,Shewanella)53,(Photorhabdus,((Erwinia,(Salmonella,(Escherichia,Shigella)100)99)37,(Yersinia,Yersinia)100)56)99)34)39,Acinetobacter)15,(((Neisseria,Chromobacterium)73,(Pseudomonas,(Pseudomonas,Pseudomonas)86)100)34,(Legionella,Nitrosomonas)16)2)9,(Coxiella,(Wigglesworthia,(Buchnera,Buchnera)99)55)28)16,Idiomarina)37,(Zymomonas,(Anaplasma,(Ehrlichia,(Wolbachia,Wolbachia)100)99)95)69)3,((Gluconobacter,Geobacter)31,((Desulfovibrio,(((Lactobacillus,Lactobacillus)100,(((Propionibacterium,(Enterococcus,((Lactococcus,(Streptococcus,(Streptococcus,Streptococcus)35)76)39,(Streptococcus,Streptococcus)68)82)59)11,((Bacillus,(((Bacillus,Bacillus)100,Geobacillus)46,(Bacillus,Bacillus)100)31)43,(Listeria,Listeria)100)62)10,(Oceanobacillus,((Mycoplasma,Fusobacterium)100,(Staphylococcus,Staphylococcus)100)59)19)17)17,(Nocardia,Lactobacillus)54)25)33,(Gloeobacter,((Prochlorococcus,Synechococcus)71,(Synechosystis,(Thermosynechococcus,Nostos)53)85)38)59)15))12,((((Helicobacter,Helicobacter)54,Wolinella)40,Campylobacter)100,Bdellovibrio)11)10,((((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)92)81)100,Methylococcus)46,Desulfotalea)100,((Silicibacter,Caulobacter)69,(((Brucella,(Brucella,Brucella)86)100,(Agrobacterium,(Mesorhizobium,Sinorhizobium)44)33)100,(Bradyrhizobium,Rhodopseudomonas)100)88)95)80)21,Aquifex)56,Francizella)100,(((Thermococcus,(Pyrococcus,Pyrococcus)69)93,(Picrophilus,(Thermoplasma,Thermoplasma)95)100)62,(Methanobacterium,(Methanosarcina,Methanosarcina)98)70)70);
(Bdellovibrio,(Ralstonia,(Pasteurella,Silicibacter)76)76);
(Neisseria,(((Acinetobacter,(Methylococcus,Pseudomonas)99)90,Idiomarina)100,(Haemophilus,Pasteurella)100)100);
(Gluconobacter,(((Vibrio,Nitrosomonas)46,(Azoarcus,Pseudomonas)85)98,Methylococcus));
((Burcholderia,Burcholderia)100,(Yersinia,Yersinia));
(Haroarcula,(Chlorobium,(Wolinella,(Bdellovibrio,((((((((((Zymomonas,(((Agrobacterium,((Bartonella,Bartonella)100,(((Brucella,Brucella)41,Brucella)100,(Mesorhizobium,Sinorhizobium)26)55)35)39,Silicibacter)77,((Rhodopseudomonas,Bradyrhizobium)100,Gluconobacter)42)36)18,Caulobacter)68,(Xylella,((Xanthomonas,Xanthomonas)52,Xanthomonas)92)100)16,((Azoarcus,(Bordetella,(Bordetella,Bordetella)84)100)40,(Ralstonia,(Burcholderia,Burcholderia)100)91)90)1,((Nitrosomonas,(Methylococcus,(((Photorhabdus,(((Erwinia,(Yersinia,Yersinia)100)72,(Escherichia,Shigella)99)48,Salmonella)86)75,(Pasteurella,(Haemophilus,Mannheimia)95)100)56,(Shewanella,Idiomarina)54)62)28)35,(Neisseria,Chromobacterium)87)20)5,Acinetobacter)18,Legionella)17,((Wigglesworthia,(Buchnera,Buchnera)56)37,Blochmannia)67)4,Coxiella)17,((Ehrlichia,(Anaplasma,(Wolbachia,Wolbachia)100)58)39,(Rickettsia,(Rickettsia,Rickettsia)95)100)27)41)25)99)99);
((Methanosarcina,Methanosarcina)100,((((Sulforobus,Thermus)85,Deinococcus)100,Desulfovibrio)58,(Bacteroides,Bacteroides)100)100);
(Nostos,(((((Methylococcus,Bradyrhizobium)48,Rhodopseudomonas)95,Mesorhizobium)39,Zymomonas)70,Wolinella));
(Chromobacterium,(Salmonella,(Yersinia,Yersinia)100)100);
(Clostridium,(((Bacillus,Bacillus)100,(((Bacillus,Bacillus)99,((Photorhabdus,(Chromobacterium,Ralstonia)75)72,Pseudomonas)99)35,Leptospira)24)57,(Mesorhizobium,(Pirellula,Pirellula)100)94)94);
(Corynebacterium,(Vibrio,(Mannheimia,(Gluconobacter,Rhodopseudomonas)43)77)77);
(Haroarcula,((Desulfotalea,Shewanella)54,Thermosynechococcus));
(Lactobacillus,(((Mannheimia,Shewanella)75,Prochlorococcus)100,Gluconobacter));
(Desulfotalea,(Pseudomonas,(Pseudomonas,Pseudomonas)99)99);
(Picrophilus,(Azoarcus,(Ralstonia,Yersinia)100)100);
((Streptomyces,Erwinia)100,(Bacillus,Bacillus));
((Pseudomonas,Pseudomonas)100,(Lactobacillus,Streptococcus));
((Methanobacterium,Archhaeoglobus)19,(Thermoanaerobacter,(((Desulfovibrio,Dehalococcoides)49,Thermotoga)46,((Clostridium,Geobacter)64,(Symbiobacterium,(Deinococcus,Thermus)99)68)53)29)29);
(Thermoanaerobacter,(((((Bacillus,Bacillus)97,Geobacillus)57,(Bacillus,Bacillus)100)65,Oceanobacillus)100,Bacillus));
(Shigella,((Chromobacterium,Salmonella)83,(Burcholderia,Burcholderia)100)100);
(Leptospira,((((Nostos,Thermosynechococcus)64,Synechosystis)100,Gloeobacter)68,Synechococcus));
(((Helicobacter,Helicobacter)82,Campylobacter)100,(Neisseria,Chromobacterium));
(Xanthomonas,(Bacillus,(Bacillus,Bacillus)72)72);
(Thermoanaerobacter,((Desulfovibrio,Bacillus)74,(Chromobacterium,(Ralstonia,(Nitrosomonas,(Burcholderia,Burcholderia)100)52)23)99)99);
(Pyrococcus,((Chlamydophila,Chlamydophila)100,Mesorhizobium));
(Bacteroides,((Rickettsia,Legionella)73,Pasteurella));
(Burcholderia,(((Pseudomonas,Pseudomonas)29,Pseudomonas)51,(Vibrio,Vibrio)100)100);
(Clostridium,((Streptococcus,Staphylococcus)66,(Streptococcus,Lactococcus)100)100);
(Clostridium,(Staphylococcus,(Streptococcus,((Bacillus,(Bacillus,Bacillus)100)88,(Listeria,Listeria)100)98)42)42);
(((Streptomyces,Streptomyces)100,(Idiomarina,Caulobacter)73)100,(Pirellula,Pirellula));
(Leifsonia,(Photorhabdus,(Bordetella,Bordetella)100)100);
(Campylobacter,(Idiomarina,(Ralstonia,Acinetobacter)99)99);
((((Aquifex,Pyrobaculum)13,(Archhaeoglobus,(Dehalococcoides,Thermus)64)23)10,(Nanoarchaeum,Methylococcus)25)100,(Thermococcus,Pyrococcus));
(Porphyromonas,((((((Bradyrhizobium,Azoarcus)30,(Burcholderia,Burcholderia)100)16,(Zymomonas,Gluconobacter)76)20,Acinetobacter)33,(Chromobacterium,Methylococcus)49)37,(Rhodopseudomonas,Nitrosomonas)100)100);
(((Campylobacter,(Helicobacter,Helicobacter)100)45,Wolinella)100,(Bacillus,Bacillus));
(Chromobacterium,(Pseudomonas,(Pseudomonas,Pseudomonas)65)65);
(Archhaeoglobus,(Chlorobium,(Desulfotalea,Desulfovibrio)56)56);
(Thermotoga,(((Borrelia,Borrelia)100,((Treponema,Treponema)98,Leptospira)89)100,Thermoanaerobacter));
(Chlorobium,((((((Francizella,Idiomarina)33,(Vibrio,(Vibrio,Vibrio)75)100)35,Shewanella)70,(Pseudomonas,(Pseudomonas,Pseudomonas)73)100)36,((Erwinia,(Salmonella,(Escherichia,Shigella)100)100)56,(Photorhabdus,(Yersinia,Yersinia)100)87)95)23,(Geobacter,((Desulfotalea,Bdellovibrio)37,(Anaplasma,(Ehrlichia,(Wolbachia,Wolbachia)100)60)100)62)64)64);
((Pyrobaculum,Nocardia)79,(Sulforobus,Aeropyrum));
(Clostridium,(Campylobacter,(Helicobacter,Wolinella)100)100);
(Chlorobium,(((((Pseudomonas,Pseudomonas)52,Pseudomonas)82,Rhodopseudomonas)97,Acinetobacter)87,(Pirellula,Pirellula)100)100);
((Clostridium,Thermoanaerobacter)100,(Methanosarcina,Methanosarcina));
((Idiomarina,Synechosystis)95,(Oceanobacillus,(Bacillus,Bacillus)100)100);
((Methanosarcina,Archhaeoglobus)47,(((((Bordetella,(Bordetella,Bordetella)75)100,(Ralstonia,(Burcholderia,Burcholderia)100)63)95,(Thermosynechococcus,Nostos)99)100,Idiomarina)99,(Methanosarcina,Pyrobaculum)49)49);
(Methanopyrus,(Pyrobaculum,(Thermoanaerobacter,(Dehalococcoides,(Thermotoga,(Bdellovibrio,((Symbiobacterium,Thermus)56,((Leptospira,(Geobacter,(Caulobacter,(Rhodopseudomonas,((Sinorhizobium,Agrobacterium)85,(Mesorhizobium,(Brucella,(Brucella,Brucella)78)100)64)100)80)96)79)27,(Oceanobacillus,(((Bacillus,Bacillus)99,Geobacillus)44,(Bacillus,(Bacillus,Bacillus)100)54)42)68)39)27)16)32)41)86)86);
(Thermosynechococcus,(Silicibacter,(Legionella,Coxiella)95)95);
((((((((((Neisseria,(Brucella,(Brucella,Brucella)100)100)61,((Rhodopseudomonas,Bradyrhizobium)58,Pseudomonas)29)3,Gluconobacter)6,Agrobacterium)30,(Pirellula,Pirellula)100)96,((Symbiobacterium,Geobacillus)49,(Streptococcus,Treponema)92)47)13,Mannheimia)35,Nostos)100,((Bacillus,Bacillus)100,(Erwinia,(Photorhabdus,(Yersinia,Yersinia)100)52)88)68)100,(Pyrococcus,(Pyrococcus,Thermococcus)55)55);
(Symbiobacterium,(Bradyrhizobium,(Bacteroides,(Pirellula,Pirellula)100)80)80);
(Chlorobium,(Leptospira,(Pyrobaculum,(Pirellula,Pirellula)100)74)74);
((Pseudomonas,Acinetobacter)100,(Streptomyces,Streptomyces));
(Thermotoga,((Clostridium,(Treponema,Thermoanaerobacter)80)77,(Symbiobacterium,(Thermus,Deinococcus)91)59)59);
(Aquifex,((Ralstonia,Bacteroides)87,Methylococcus));
(((Thermosynechococcus,Nostos)99,Geobacillus)100,(Methanosarcina,Methanosarcina));
(Agrobacterium,((Leifsonia,Streptomyces)89,(Thermus,Deinococcus)100)100);
(Bacteroides,((((Vibrio,Vibrio)78,Vibrio)100,Desulfovibrio)49,Silicibacter));
(Halobacterium,(Acinetobacter,(Nocardia,(Escherichia,Shigella)100)56)56);
((((Thermoplasma,Thermoplasma)100,Picrophilus)100,Pyrococcus)100,(Clostridium,Clostridium));
(Leptospira,(Escherichia,(Streptomyces,Deinococcus)99)99);
(((Methylococcus,((Pseudomonas,(Pseudomonas,Pseudomonas)99)100,(Francizella,((Chromobacterium,Coxiella)32,Legionella)34)7)22)21,((((Pasteurella,(Haemophilus,Mannheimia)49)100,(((Salmonella,(Escherichia,Shigella)100)100,(Photorhabdus,(Yersinia,Yersinia)100)62)86,(Erwinia,Wigglesworthia)22)55)47,(Vibrio,(Vibrio,(Vibrio,Vibrio)88)66)99)71,Shewanella)43)24,((Burcholderia,Azoarcus)33,(Bordetella,(Bordetella,Bordetella)100)100)100);
((((Nocardia,(Mycobacterium,Mycobacterium)100)66,(Streptomyces,Streptomyces)100)80,Deinococcus)100,(Pirellula,Pirellula));
(Treponema,(Desulfotalea,(Bartonella,Propionibacterium)100)100);
(Clostridium,(Bacillus,(Bacteroides,(Streptococcus,Mycoplasma)96)52)52);
(((Oceanobacillus,(Bacillus,Streptomyces)47)40,Chlorobium)78,(Bacillus,Bacillus));
(Lactobacillus,(((Salmonella,Vibrio)55,Agrobacterium)93,Propionibacterium));
(Ralstonia,(((Mesorhizobium,Bradyrhizobium)83,Rhodopseudomonas)100,Zymomonas));
(Streptomyces,(Agrobacterium,(Brucella,Brucella)100)100);
(Symbiobacterium,(((Gluconobacter,(Burcholderia,Burcholderia)100)72,Zymomonas)100,(Vibrio,(Thermoanaerobacter,(Enterococcus,(Listeria,Listeria)100)33)31)29)29);
((((Xanthomonas,Xanthomonas)96,Xanthomonas)100,Pseudomonas)98,(Ralstonia,(Bordetella,Bordetella)100)100);
(Symbiobacterium,((Nocardia,(Ralstonia,Chromobacterium)100)62,(Streptomyces,(Mycobacterium,Mycobacterium)100)95)95);
(((((((((((((Erwinia,(Yersinia,Yersinia)100)76,(Salmonella,(Shigella,Escherichia)99)95)69,Idiomarina)14,(Azoarcus,(Chromobacterium,(Vibrio,(Vibrio,(Vibrio,Vibrio)100)98)82)55)32)27,Acinetobacter)22,(Xanthomonas,Xanthomonas)100)17,(Legionella,Shewanella)53)25,Desulfotalea)48,(Bordetella,Bordetella)100)47,(Geobacter,(Pseudomonas,Pseudomonas)100)49)15,((Treponema,Treponema)100,(Pirellula,Pirellula)100)64)77,((Silicibacter,(Mesorhizobium,(Agrobacterium,Sinorhizobium)97)92)60,(((Caulobacter,Bdellovibrio)32,(Gluconobacter,Bartonella)18)16,((Rhodopseudomonas,Bradyrhizobium)98,(Brucella,(Brucella,Brucella)96)100)24)26)81)100,((Staphylococcus,(Oceanobacillus,(Bacillus,Bacillus)99)75)90,((Bacillus,(Bacillus,Bacillus)92)44,(Listeria,Listeria)100)53)53);
(((Bordetella,Bordetella)97,Bordetella)100,(Mesorhizobium,Sinorhizobium));
((((((((Vibrio,(Vibrio,Vibrio)34)83,Vibrio)97,((Photorhabdus,(Erwinia,(Yersinia,Yersinia)100)74)87,(Salmonella,(Escherichia,Shigella)100)100)57)81,(Pasteurella,(Mannheimia,Haemophilus)75)99)87,(Bdellovibrio,Parachlamydia)100)55,Shewanella)98,(Chlorobium,Nostos)58)96,(Staphylococcus,(Oceanobacillus,((Bacillus,Geobacillus)83,(Bacillus,Bacillus)52)55)95)95);
(Pyrobaculum,(Nanoarchaeum,(((Archhaeoglobus,(Methanosarcina,Methanosarcina)100)71,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)94)94)100)20,((((Methanobacterium,Methanobacterium)100,(Aeropyrum,(Sulforobus,Sulforobus)100)97)31,(Methanopyrus,Methanobacterium)9)11,((Halobacterium,Haroarcula)100,(Picrophilus,(Thermoplasma,Thermoplasma)80)100)59)2)90)90);
(((Bacillus,Bacillus)90,Oceanobacillus)99,((Mesorhizobium,Sinorhizobium)100,(Streptomyces,(Streptomyces,(Leifsonia,Corynebacterium)89)82)100)100);
(Methylococcus,((Bradyrhizobium,(Mesorhizobium,Rhodopseudomonas)50)52,Zymomonas));
(Geobacillus,(Synechosystis,(Synechococcus,Prochlorococcus)97)97);
(Thermotoga,(((Buchnera,Blochmannia)36,Legionella)49,Helicobacter));
(Fusobacterium,(Clostridium,(Clostridium,((Listeria,Listeria)100,(Escherichia,Salmonella)100)46)47)47);
(((((((((Salmonella,(Escherichia,Shigella)100)99,(Erwinia,(Yersinia,Yersinia)100)38)58,Photorhabdus)100,(((Vibrio,Vibrio)52,Vibrio)45,Vibrio)100)49,Shewanella)39,Idiomarina)100,Nitrosomonas)62,(Methylococcus,(Azoarcus,(Sinorhizobium,(Rhodopseudomonas,Bradyrhizobium)97)100)68)47)100,(Synechococcus,Prochlorococcus));
((Mycobacterium,Mycobacterium)100,(Agrobacterium,Geobacter));
(Nocardia,(((Pseudomonas,Pseudomonas)66,Legionella)100,Ralstonia));
(((Bacteroides,Bacteroides)100,Porphyromonas)96,(Shewanella,Desulfovibrio));
(Propionibacterium,(((((Brucella,Brucella)81,Brucella)100,Silicibacter)100,Azoarcus)66,(Yersinia,Yersinia)100)100);
(Gloeobacter,((Streptomyces,Streptomyces)100,Sinorhizobium));
(Nostos,(Mesorhizobium,((Ralstonia,Pseudomonas)84,(Pirellula,Pirellula)100)55)55);
(((Salmonella,(Escherichia,Shigella)100)100,((Haemophilus,Vibrio)64,Photorhabdus)41)100,(Bordetella,(Bordetella,Bordetella)78)78);
((Bacillus,Bacillus)100,(Pirellula,Pirellula));
((Deinococcus,Streptomyces)100,(Bacillus,((Bacillus,Bacillus)98,(Geobacillus,((Bacillus,Bacillus)100,(Oceanobacillus,(Staphylococcus,Staphylococcus)100)36)43)44)69)69);
(Haroarcula,((((Nocardia,(Corynebacterium,Corynebacterium)81)61,(Oceanobacillus,Streptomyces)70)99,Streptomyces)53,(Mesorhizobium,Bradyrhizobium)100)100);
(Pseudomonas,(Ralstonia,((Azoarcus,Chromobacterium)57,(Burcholderia,Burcholderia)100)36)36);
(((((Pseudomonas,Pseudomonas)91,Idiomarina)57,(Burcholderia,((Bordetella,Bordetella)93,Bordetella)100)53)73,(Mesorhizobium,(Pseudomonas,Agrobacterium)100)59)100,(Thermosynechococcus,Synechosystis));
((Streptococcus,Staphylococcus)97,(Porphyromonas,((Haemophilus,Nostos)99,(Xanthomonas,(Xanthomonas,Xanthomonas)93)100)48)48);
(Azoarcus,((Xylella,Xanthomonas)35,(Xanthomonas,(Photorhabdus,Salmonella)100)31)31);
((Desulfovibrio,Agrobacterium)100,(Mycobacterium,Mycobacterium));
(((((Bacillus,Bacillus)91,(Thermoanaerobacter,(Bacillus,(Caulobacter,Streptococcus)44)34)17)28,Dehalococcoides)44,(Symbiobacterium,Geobacillus)25)100,(Methanosarcina,Methanosarcina));
(Symbiobacterium,(Mycobacterium,(Mycobacterium,Mycobacterium)71)71);
(Geobacillus,(((Brucella,Brucella)60,Brucella)100,(Agrobacterium,Sinorhizobium)59)59);
(Parachlamydia,((Salmonella,(Buchnera,Buchnera)97)86,(Leifsonia,Agrobacterium)66)66);
((Bradyrhizobium,Rhodopseudomonas)37,(Burcholderia,Xanthomonas));
(Staphylococcus,((Vibrio,((Pasteurella,Leptospira)48,(Bdellovibrio,Azoarcus)87)64)100,Bacteroides));
(Pyrococcus,(((Bradyrhizobium,Zymomonas)37,(Desulfovibrio,((Bordetella,Bordetella)98,Bordetella)100)18)95,Streptococcus));
(Methylococcus,(Nitrosomonas,(Azoarcus,((Bordetella,(Bordetella,Bordetella)88)100,((Chromobacterium,Neisseria)99,(Ralstonia,(Burcholderia,Burcholderia)100)73)31)23)63)63);
(Symbiobacterium,(Bacteroides,(Porphyromonas,Bacteroides)44)44);
(Vibrio,((Brucella,Brucella)18,Brucella));
(Clostridium,((Desulfovibrio,Clostridium)100,(Pirellula,Pirellula)100)100);
((Bacillus,Bacillus)100,(Photorhabdus,Streptomyces));
((Methanosarcina,Methanosarcina)100,(Clostridium,((Desulfotalea,((Thermotoga,Fusobacterium)35,Methanobacterium)46)32,((Desulfovibrio,Geobacter)44,(((((((Methylococcus,(Bradyrhizobium,Rhodopseudomonas)100)51,((Azoarcus,Chromobacterium)97,Acinetobacter)39)57,((Pseudomonas,Pseudomonas)60,Pseudomonas)100)67,(Vibrio,((Vibrio,Vibrio)69,Vibrio)72)100)58,Shewanella)29,(Yersinia,(Salmonella,(Shigella,Escherichia)100)100)100)100,(Porphyromonas,(Bacteroides,Bacteroides)99)100)85)36)70)70);
(Pseudomonas,((Burcholderia,Burcholderia)100,Chromobacterium));
(Desulfovibrio,((Vibrio,Vibrio)100,Chromobacterium));
(Nitrosomonas,(Xanthomonas,(Xanthomonas,Xanthomonas)97)97);
((Streptococcus,Staphylococcus)100,(Mycobacterium,Mycobacterium));
(Bacteroides,((Clostridium,Clostridium)54,Clostridium));
(Azoarcus,(Pseudomonas,(Xanthomonas,(Idiomarina,(Vibrio,(Vibrio,Vibrio)100)86)87)35)35);
(Bdellovibrio,(((((Vibrio,(Vibrio,Vibrio)93)83,Vibrio)100,Francizella)25,Shewanella)46,(Desulfotalea,Campylobacter)100)100);
(Streptomyces,((Sulforobus,Sulforobus)100,Aeropyrum));
(Methanobacterium,(Chromobacterium,(Nocardia,((Oceanobacillus,(Bacillus,Geobacillus)50)63,(Bacillus,Bacillus)100)88)72)72);
(Geobacter,(Wolinella,(Shewanella,Campylobacter)38)38);
(Clostridium,(Bacillus,(Chromobacterium,(Photorhabdus,(Yersinia,Yersinia)100)83)92)92);
(Bacteroides,((Agrobacterium,(Xanthomonas,Xanthomonas)100)94,(Pirellula,Pirellula)100)100);
(Desulfovibrio,((Shewanella,(Escherichia,Haemophilus)52)78,(Bordetella,Neisseria)80)80);
((((Pseudomonas,(((Bordetella,Bordetella)76,Bordetella)100,(Ralstonia,(Burcholderia,Burcholderia)100)84)68)58,Pseudomonas)75,Chromobacterium)100,(Salmonella,(Erwinia,(Yersinia,Yersinia)100)55)55);
(Synechosystis,((Bacteroides,Bacteroides)99,Geobacter));
(Rhodopseudomonas,(Xanthomonas,(Pseudomonas,Pasteurella)82)82);
(Caulobacter,(Shewanella,(Idiomarina,Xanthomonas)52)52);
((((((Pyrococcus,Pyrococcus)59,Pyrococcus)100,Thermococcus)100,(Picrophilus,(Thermoplasma,Thermoplasma)100)100)81,(Methanosarcina,Methanosarcina)100)100,(Chlorobium,(Nocardia,(Leifsonia,(Streptomyces,Streptomyces)100)92)49)49);
(Synechosystis,(Erwinia,(Yersinia,Yersinia)100)100);
(Azoarcus,((Xylella,Xanthomonas)100,Xanthomonas));
((Silicibacter,Wolbachia)100,(Pirellula,Pirellula));
(Silicibacter,(((Bordetella,(Bordetella,Bordetella)76)100,Neisseria)75,(Idiomarina,Vibrio)74)74);
(Haroarcula,((Helicobacter,Oceanobacillus)90,Clostridium));
(Nocardia,(Caulobacter,(Mycobacterium,(Rhodopseudomonas,Bradyrhizobium)100)59)59);
((Methanosarcina,Methanosarcina)100,((Gluconobacter,Nostos)83,(((((((Brucella,Brucella)76,Brucella)100,(Agrobacterium,Sinorhizobium)96)26,Mesorhizobium)44,(Bartonella,Bartonella)100)62,(Caulobacter,(Bradyrhizobium,Rhodopseudomonas)99)73)38,(Silicibacter,(Zymomonas,(Corynebacterium,(Streptomyces,Streptomyces)99)100)37)19)24)24);
(Enterococcus,((Vibrio,Vibrio)100,Vibrio));
(Bacillus,(Azoarcus,(Bacteroides,Bacteroides)100)100);
(Haroarcula,(Desulfovibrio,(Idiomarina,Silicibacter)86)86);
(Desulfotalea,((Ralstonia,Xanthomonas)57,Erwinia));
(Methylococcus,((Tropheryma,Leifsonia)90,(((Corynebacterium,(Corynebacterium,Corynebacterium)63)100,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)95)68)68,(Propionibacterium,(Streptomyces,Streptomyces)100)48)46)46);
((((((Vibrio,Vibrio)100,Vibrio)51,Vibrio)100,((Pasteurella,(Haemophilus,Mannheimia)69)100,(Photorhabdus,(Yersinia,Yersinia)100)95)46)62,Shewanella)100,(Corynebacterium,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)86)86);
(Fusobacterium,((Streptococcus,Streptococcus)47,(Lactococcus,(Lactobacillus,Lactobacillus)100)74)74);
(Gluconobacter,(((Xanthomonas,Xanthomonas)69,Xanthomonas)100,(Methylococcus,Azoarcus)99)99);
(Pyrobaculum,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)67)53)53);
(Acinetobacter,(Nocardia,(Streptomyces,Streptomyces)100)100);
((Bacteroides,Bacteroides)100,(Salmonella,(Yersinia,Yersinia)100)100);
((((((Salmonella,(Escherichia,Shigella)99)100,(Erwinia,(Photorhabdus,(Yersinia,Yersinia)100)33)63)97,(Mannheimia,(Pasteurella,Haemophilus)43)100)74,((Vibrio,Vibrio)57,(Vibrio,Vibrio)82)66)62,(Idiomarina,Shewanella)64)100,((Burcholderia,Burcholderia)100,(Ralstonia,(Bordetella,Bordetella)100)49)49);
(Geobacillus,(Thermoanaerobacter,(Symbiobacterium,(Clostridium,Clostridium)100)97)97);
(Gluconobacter,((Rhodopseudomonas,Pseudomonas)50,Ralstonia));
(Staphylococcus,(Photorhabdus,(Yersinia,Yersinia)100)100);
(Bdellovibrio,(Chromobacterium,(Shewanella,(Pseudomonas,Pseudomonas)100)57)57);
(((Caulobacter,Chromobacterium)62,Rhodopseudomonas)100,(Pirellula,Pirellula));
(Lactobacillus,(((Ralstonia,Xylella)100,Bradyrhizobium)100,Streptomyces));
(Salmonella,(Streptomyces,(Propionibacterium,Corynebacterium)95)95);
(Methanosarcina,(((Nostos,Gloeobacter)58,Streptococcus)71,Desulfotalea));
((Caulobacter,Sinorhizobium)83,(Pseudomonas,Pseudomonas));
(Methanosarcina,((Methanobacterium,(Bacillus,Bacillus)100)85,(Clostridium,(Treponema,Fusobacterium)100)79)79);
(Streptococcus,((Thermosynechococcus,Agrobacterium)45,(Idiomarina,Neisseria)100)100);
((((Sinorhizobium,Agrobacterium)100,(Mesorhizobium,Bradyrhizobium)50)100,Silicibacter)98,(Clostridium,Symbiobacterium));
((Corynebacterium,Corynebacterium)100,((Salmonella,Photorhabdus)92,(Bordetella,Bordetella)100)100);
(Nostos,((Vibrio,Chromobacterium)97,(Bradyrhizobium,(Streptomyces,Streptomyces)100)58)58);
((((Photorhabdus,(Shewanella,(Caulobacter,(Xanthomonas,(Xanthomonas,Xanthomonas)89)100)33)36)71,Pseudomonas)71,Escherichia)100,(Mesorhizobium,Bradyrhizobium));
(Symbiobacterium,((((((Bacillus,Bacillus)100,(Bacillus,Bacillus)91)46,Bacillus)28,Geobacillus)78,Oceanobacillus)63,(Staphylococcus,Staphylococcus)100)100);
(Neisseria,(((Pseudomonas,Pseudomonas)94,Pseudomonas)100,Coxiella));
((Mesorhizobium,(Agrobacterium,Sinorhizobium)100)99,((((((Vibrio,Vibrio)47,Vibrio)83,Vibrio)100,(Pseudomonas,(Pseudomonas,Pseudomonas)89)100)100,Silicibacter)68,(Bordetella,Bordetella)100)100);
(Leptospira,(Ralstonia,(Pirellula,Pirellula)100)100);
((Methanobacterium,Methanobacterium)100,(Clostridium,Staphylococcus));
(((Bacteroides,Bacteroides)100,Porphyromonas)100,(Caulobacter,Streptomyces));
(Fusobacterium,(Wolbachia,(Desulfovibrio,(Escherichia,(Corynebacterium,(((Gluconobacter,Legionella)55,(Rhodopseudomonas,Agrobacterium)70)77,((Coxiella,(Nitrosomonas,Ralstonia)100)66,((Shewanella,Idiomarina)75,(Pseudomonas,(Yersinia,Yersinia)100)59)100)100)85)76)27)62)62);
(Geobacter,((Pseudomonas,Azoarcus)94,Erwinia));
(Pyrobaculum,((Sulforobus,Sulforobus)98,(Aeropyrum,(((((Methanobacterium,Methanobacterium)96,(Nanoarchaeum,((Pyrococcus,Pyrococcus)87,(Pyrococcus,Thermococcus)21)100)33)22,(Picrophilus,(Thermoplasma,Thermoplasma)100)100)8,Methanobacterium)7,(Methanopyrus,(Archhaeoglobus,(Methanosarcina,Methanosarcina)100)42)33)22)31)31);
(Helicobacter,((Shigella,Escherichia)67,Salmonella));
(Acinetobacter,(((Burcholderia,Ralstonia)100,Xanthomonas)56,(Bordetella,Bordetella)100)100);
(((Xanthomonas,(Xanthomonas,Xanthomonas)66)100,(Idiomarina,Shewanella)91)90,(Nitrosomonas,(Burcholderia,Burcholderia)100)100);
((Chromobacterium,(Photorhabdus,(Burcholderia,Pseudomonas)98)20)99,(Bacillus,Bacillus));
(((Vibrio,(Vibrio,Vibrio)53)100,Shewanella)100,(Pirellula,Pirellula));
((((((((((Yersinia,Yersinia)100,Photorhabdus)59,(Erwinia,((Idiomarina,(Vibrio,(Vibrio,(Vibrio,Vibrio)89)80)77)79,(Salmonella,(Escherichia,Shigella)100)89)66)43)85,(Blochmannia,Wigglesworthia)94)97,Acinetobacter)52,(Pseudomonas,(Pseudomonas,Pseudomonas)73)100)39,Legionella)40,Coxiella)62,Francizella)95,((Neisseria,Chromobacterium)99,((Azoarcus,(Ralstonia,(Burcholderia,Burcholderia)100)57)40,(Bordetella,(Bordetella,Bordetella)89)100)69)69);
(Methanosarcina,(Campylobacter,(Lactobacillus,Lactobacillus)100)100);
(Campylobacter,(Methylococcus,(Shewanella,(Yersinia,Yersinia)100)99)99);
((Streptomyces,(Bradyrhizobium,Desulfotalea)54)100,(Pirellula,Pirellula));
(Symbiobacterium,(Bradyrhizobium,(Bordetella,Bordetella)64)64);
(Bacteroides,(Escherichia,(Idiomarina,Helicobacter)46)46);
(Haroarcula,(Chromobacterium,(Bradyrhizobium,Pseudomonas)100)100);
(Thermoanaerobacter,(Pyrococcus,(Thermoplasma,(Sulforobus,Sulforobus)98)64)64);
(Chlorobium,(Desulfovibrio,(Pirellula,Pirellula)100)100);
(Oceanobacillus,(Corynebacterium,(Corynebacterium,Corynebacterium)86)86);
(Leptospira,(((Pseudomonas,Streptomyces)97,(Caulobacter,Silicibacter)100)97,(Erwinia,Pseudomonas)100)100);
(Clostridium,(Salmonella,(Listeria,Listeria)100)100);
(Thermotoga,(Bartonella,((Rickettsia,(Rickettsia,Rickettsia)99)100,(Wolinella,Helicobacter)100)71)71);
((((Corynebacterium,(Corynebacterium,Corynebacterium)99)100,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)66,Propionibacterium)100,(Bordetella,(Bordetella,Bordetella)76)76);
(Coxiella,(Deinococcus,(Nocardia,Streptomyces)98)98);
(Clostridium,(Mesorhizobium,((Streptococcus,Lactococcus)97,(Yersinia,Yersinia)100)96)96);
(Methanobacterium,(Coxiella,(Mycobacterium,Mycobacterium)100)100);
(Bordetella,((Escherichia,Shigella)88,Salmonella));
(Caulobacter,(Azoarcus,(Acinetobacter,((Ralstonia,(((Pseudomonas,Shigella)58,Pseudomonas)46,Pseudomonas)95)54,((Bordetella,(Bordetella,Bordetella)75)100,(Burcholderia,Burcholderia)100)29)70)74)74);
(Synechosystis,((((Xanthomonas,Xanthomonas)76,Xanthomonas)91,Leifsonia)100,(Pseudomonas,(Pseudomonas,Pseudomonas)73)97)97);
(Neisseria,((Brucella,Brucella)19,Brucella));
((((Porphyromonas,(Bacteroides,Bacteroides)100)87,Bacillus)77,Idiomarina)100,(Listeria,Listeria));
(Clostridium,(Salmonella,(Listeria,Listeria)100)100);
(Parachlamydia,(Francizella,(Agrobacterium,(Rhodopseudomonas,Bradyrhizobium)100)90)90);
(Synechococcus,((Sinorhizobium,Salmonella)97,Coxiella));
(((Yersinia,Yersinia)100,Escherichia)100,(Sinorhizobium,Agrobacterium));
(Clostridium,((Treponema,Zymomonas)40,(Lactobacillus,Lactococcus)49)49);
(Symbiobacterium,(Oceanobacillus,(Bacillus,(Bacillus,(Geobacillus,(Bacillus,(Bacillus,Bacillus)100)31)26)47)90)90);
(Thermoplasma,((((Bartonella,Mesorhizobium)95,(Agrobacterium,Sinorhizobium)100)86,Silicibacter)100,(Buchnera,Pasteurella)92)92);
(Halobacterium,(Mesorhizobium,(Haemophilus,Pasteurella)62)62);
((((((Zymomonas,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)100)100)100)51,Gluconobacter)15,Caulobacter)15,((((Mesorhizobium,(Sinorhizobium,Agrobacterium)100)92,(Brucella,(Brucella,Brucella)54)100)51,(Bartonella,Bartonella)100)100,(Bradyrhizobium,Rhodopseudomonas)100)83)48,Silicibacter)100,(Bifidobacterium,((Nocardia,(Streptomyces,Streptomyces)100)82,(Mycobacterium,Mycobacterium)100)100)100);
(Nostos,(Vibrio,((Nocardia,Mesorhizobium)94,(Pseudomonas,Mannheimia)100)74)74);
(Ureaplasma,(((Rhodopseudomonas,Campylobacter)22,Bacteroides)52,Helicobacter));
(Clostridium,(Escherichia,(Bacteroides,Bacteroides)100)100);
((Archhaeoglobus,((Methanobacterium,Thermococcus)99,(Pyrococcus,(Pyrococcus,Pyrococcus)99)62)85)31,(((Gloeobacter,(Thermosynechococcus,(Synechosystis,Nostos)55)100)100,(((Halobacterium,Salmonella)24,Methanopyrus)16,Enterococcus)22)12,((Pyrobaculum,(Aeropyrum,Sulforobus)69)52,(Agrobacterium,Mesorhizobium)100)3)3);
(((Helicobacter,Helicobacter)100,Bifidobacterium)100,(Lactobacillus,Lactobacillus));
((Mesorhizobium,((Agrobacterium,Sinorhizobium)93,(Brucella,(Brucella,Brucella)62)100)61)97,(Methylococcus,((Rhodopseudomonas,Bradyrhizobium)96,(Silicibacter,((Vibrio,Vibrio)99,((Pasteurella,(Mannheimia,Haemophilus)51)100,((Salmonella,(Escherichia,Shigella)100)95,(Erwinia,(Yersinia,Yersinia)100)88)100)46)100)35)17)17);
((Pseudomonas,Pseudomonas)100,(Burcholderia,Burcholderia));
((Methanosarcina,Sulforobus)69,(Streptomyces,(Corynebacterium,Corynebacterium)100)100);
(Thermotoga,(Streptomyces,(Desulfovibrio,(Xanthomonas,Xanthomonas)100)76)76);
(Bacillus,(((Shewanella,Methylococcus)52,Gluconobacter)95,Escherichia));
(((((Xanthomonas,Xanthomonas)100,Xanthomonas)100,Xylella)97,(Ralstonia,(Bordetella,(Burcholderia,Burcholderia)100)74)100)100,(Rhodopseudomonas,Bradyrhizobium));
(Methanosarcina,(Dehalococcoides,(Azoarcus,Burcholderia)75)75);
(Clostridium,(Bacillus,(Bacillus,(Bradyrhizobium,(Bacillus,Bacillus)80)12)45)45);
(Aquifex,((Vibrio,Vibrio)56,Shewanella));
(Oceanobacillus,(((Vibrio,Vibrio)100,Vibrio)96,(Yersinia,Yersinia)100)100);
(Streptomyces,(((Mesorhizobium,Sinorhizobium)65,Agrobacterium)100,Caulobacter));
(Fusobacterium,((Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)75)100)92,(Thermotoga,(((((Lactobacillus,Lactobacillus)100,(Lactobacillus,Enterococcus)88)56,((((Geobacillus,(Bacillus,Bacillus)100)55,(Bacillus,Bacillus)98)91,(Bacillus,Oceanobacillus)39)70,(Listeria,Listeria)100)73)32,((Lactococcus,(Streptococcus,(Streptococcus,(Streptococcus,(Streptococcus,Streptococcus)85)63)75)99)84,(Staphylococcus,Staphylococcus)100)39)78,(Dehalococcoides,((Symbiobacterium,(Geobacter,Desulfotalea)63)2,(((((((((((Mycobacterium,Mycobacterium)100,(Mycobacterium,Nocardia)77)99,(Corynebacterium,(Corynebacterium,Corynebacterium)69)100)50,(Streptomyces,Streptomyces)100)23,(Leifsonia,Tropheryma)68)20,Bifidobacterium)36,Propionibacterium)100,(Deinococcus,Thermus)99)78,((Anaplasma,Ehrlichia)100,(Zymomonas,(Gluconobacter,((((Mesorhizobium,((Bartonella,Bartonella)100,(Brucella,(Brucella,Brucella)64)100)77)76,(Sinorhizobium,Agrobacterium)100)69,(Bradyrhizobium,Rhodopseudomonas)100)27,(Caulobacter,Silicibacter)40)52)65)54)83)12,((((Acinetobacter,(Coxiella,((Methylococcus,(Pseudomonas,(Pseudomonas,Pseudomonas)95)100)51,((((((Pasteurella,Haemophilus)87,Mannheimia)100,((Photorhabdus,((Erwinia,(Salmonella,(Escherichia,Shigella)99)95)51,(Yersinia,Yersinia)100)60)89,(Vibrio,(Vibrio,(Vibrio,Vibrio)54)71)96)40)29,Shewanella)39,Idiomarina)58,Legionella)21)26)56)77,(Xylella,((Xanthomonas,Xanthomonas)58,Xanthomonas)61)100)38,(Neisseria,(((Burcholderia,Burcholderia)100,((Azoarcus,Ralstonia)56,(Bordetella,(Bordetella,Bordetella)48)100)46)72,(Nitrosomonas,Chromobacterium)72)69)40)60,Bdellovibrio)16),(((Pirellula,Pirellula)100,Treponema)31,((Prochlorococcus,((Thermosynechococcus,(Synechosystis,Synechococcus)44)44,Gloeobacter)45)93,(Parachlamydia,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)98)60)97)100)21)5)3)3)11)12)40)40);
((Bacteroides,Bacteroides)57,(Bordetella,Bordetella));
(Gloeobacter,((Pirellula,Pirellula)100,Geobacter));
(Thermotoga,(Thermoanaerobacter,((Clostridium,(Clostridium,Clostridium)68)98,((((((((Bacillus,Bacillus)98,((Bacillus,Bacillus)100,Bacillus)16)32,Geobacillus)43,((((((Streptococcus,Streptococcus)54,Streptococcus)45,Streptococcus)53,(Streptococcus,Lactococcus)41)100,(Lactobacillus,Lactobacillus)100)46,(Lactobacillus,Enterococcus)71)67)6,Oceanobacillus)21,(Listeria,Listeria)100)51,(Staphylococcus,Staphylococcus)100)52,(Fusobacterium,(Mycoplasma,(Mycoplasma,Mycoplasma)98)100)79)91)52)52);
(Coxiella,((((Brucella,Brucella)57,Brucella)100,(Bradyrhizobium,Rhodopseudomonas)99)94,Silicibacter));
((((Pseudomonas,Pseudomonas)39,Pseudomonas)99,(Methylococcus,(Legionella,Coxiella)96)94)100,(Bordetella,Bordetella));
(Pseudomonas,((Brucella,Brucella)46,Brucella));
(Fusobacterium,((((((((Gloeobacter,(Synechosystis,Nostos)47)88,Thermus)63,(Synechococcus,Prochlorococcus)82)94,(Geobacillus,Deinococcus)46)94,(Pirellula,Pirellula)100)37,Bdellovibrio)61,Thermoanaerobacter)100,Treponema));
((Dehalococcoides,Thermus)97,(Lactobacillus,(Bacillus,Bacillus)100)100);
(Pyrobaculum,((Thermoplasma,Thermoplasma)76,Picrophilus));
(Methanosarcina,((Mesorhizobium,Sinorhizobium)100,(Legionella,(Bacillus,Oceanobacillus)100)99)99);
(Synechosystis,((Chromobacterium,Nitrosomonas)63,(Rickettsia,Rickettsia)100)100);
((Brucella,(Brucella,Brucella)55)100,(Picrophilus,Thermoplasma));
(Methanopyrus,((((Xanthomonas,Xanthomonas)97,Xanthomonas)88,Xylella)100,Idiomarina));
((Rhodopseudomonas,Mesorhizobium)30,(Acinetobacter,(Pseudomonas,Bradyrhizobium)57)57);
(Thermotoga,(((Leptospira,(Treponema,Treponema)100)82,(Borrelia,Borrelia)100)44,(Symbiobacterium,(Thermoanaerobacter,(((Bacillus,Oceanobacillus)66,Geobacillus)81,(Bdellovibrio,(Salmonella,(Shigella,Escherichia)61)100)93)66)56)42)42);
(Anaplasma,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)96)59)59);
(((Silicibacter,Nostos)82,Vibrio)100,(Synechococcus,Synechosystis));
(Deinococcus,(((Pyrococcus,Pyrococcus)100,Thermococcus)100,Aeropyrum));
(Archhaeoglobus,((Nocardia,Desulfovibrio)50,((Gluconobacter,Corynebacterium)28,(Lactococcus,(Enterococcus,Lactobacillus)57)100)54)54);
((((Burcholderia,Azoarcus)34,Chromobacterium)87,Pseudomonas)100,(Brucella,(Brucella,Brucella)81)81);
((Geobacillus,Bacillus)100,(Nostos,Gloeobacter));
((((Archhaeoglobus,(Methanosarcina,Methanosarcina)100)40,(Haroarcula,Halobacterium)96)15,Methanobacterium)4,((((((Porphyromonas,(Bacteroides,Bacteroides)100)100,((Neisseria,Chromobacterium)48,((Vibrio,(Vibrio,(Vibrio,Vibrio)34)65)100,(Wigglesworthia,((Photorhabdus,(Yersinia,Yersinia)100)62,((Erwinia,Buchnera)18,(Salmonella,(Shigella,Escherichia)100)95)24)53)80)86)100)73,(Picrophilus,(Thermoplasma,Thermoplasma)96)100)11,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)72)95)95)1,(Methanopyrus,(Methanobacterium,Methanobacterium)99)25)1,(Pyrobaculum,((Sulforobus,Sulforobus)100,(Aeropyrum,(Bifidobacterium,(Clostridium,Clostridium)100)99)79)19)42)42);
(Clostridium,(Propionibacterium,(Vibrio,Bifidobacterium)58)58);
(Ralstonia,((Xanthomonas,Xanthomonas)100,Xanthomonas));
(Sinorhizobium,(Pseudomonas,(Burcholderia,Burcholderia)100)100);
(Synechosystis,(Nitrosomonas,(Chlorobium,(Streptomyces,Streptomyces)100)74)74);
(((Thermococcus,Pyrococcus)46,(Pyrococcus,Pyrococcus)95)100,((Staphylococcus,Staphylococcus)100,(Deinococcus,(Oceanobacillus,(Bacillus,Bacillus)100)61)76)76);
(Deinococcus,(Thermus,((Leifsonia,(Streptomyces,Streptomyces)100)67,(Mycobacterium,Mycobacterium)100)98)98);
((((Mesorhizobium,Sinorhizobium)67,Bradyrhizobium)89,Silicibacter)91,((Burcholderia,Burcholderia)100,(Azoarcus,Pseudomonas)100)100);
(Desulfotalea,(Vibrio,(Shigella,(Yersinia,Yersinia)100)81)81);
(Bradyrhizobium,(Ralstonia,(Erwinia,(Chromobacterium,(Bordetella,Bordetella)100)31)67)67);
(Gloeobacter,((Sinorhizobium,Agrobacterium)53,(Mesorhizobium,Chromobacterium)76)76);
((Erwinia,Ralstonia)100,(Bacillus,Bacillus));
((Pseudomonas,Escherichia)100,(Pirellula,Pirellula));
((Methanobacterium,Methanobacterium)97,(Rhodopseudomonas,(Aquifex,(Pirellula,Pirellula)100)51)51);
(Ralstonia,(Pseudomonas,(Pseudomonas,Pseudomonas)47)47);
(Fusobacterium,(((Pseudomonas,Pseudomonas)56,Pseudomonas)100,Vibrio));
(Symbiobacterium,((((Propionibacterium,(Streptomyces,Streptomyces)100)75,Leifsonia)43,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)74)74,(Corynebacterium,(Corynebacterium,Corynebacterium)76)100)100);
((Symbiobacterium,Helicobacter)100,(Thermoplasma,Thermoplasma));
(Clostridium,(Coxiella,(Listeria,Listeria)100)100);
(((Bacillus,Streptococcus)100,Leifsonia)100,(Methanosarcina,Methanosarcina));
(Gluconobacter,((Xanthomonas,(Xanthomonas,Xanthomonas)83)100,((Methylococcus,(Ralstonia,Azoarcus)74)78,(Shewanella,Pseudomonas)100)43)43);
((Pasteurella,(Photorhabdus,Acinetobacter)62)69,(Neisseria,(Ralstonia,(Chromobacterium,(Burcholderia,Burcholderia)100)40)63)63);
((Synechosystis,Gloeobacter)100,(Mycobacterium,Mycobacterium));
((Mesorhizobium,Bradyrhizobium)100,(Pirellula,Pirellula));
((Caulobacter,Bradyrhizobium)100,(Pseudomonas,(((Bordetella,Bordetella)97,Bordetella)100,(Ralstonia,(Burcholderia,Burcholderia)100)100)98)98);
(((Acinetobacter,Pseudomonas)100,(Bradyrhizobium,(Mesorhizobium,Agrobacterium)100)100)100,(Pirellula,Pirellula));
(Streptomyces,(Desulfovibrio,(Sinorhizobium,Mesorhizobium)100)100);
((Agrobacterium,Sinorhizobium)49,(Streptomyces,(Corynebacterium,Corynebacterium)87)87);
(Streptococcus,(Burcholderia,(Escherichia,Shigella)100)100);
(Zymomonas,((((Pasteurella,Coxiella)25,(Photorhabdus,(Erwinia,(Yersinia,Yersinia)100)67)100)33,Chromobacterium)38,(Vibrio,Acinetobacter)98)98);
((Streptomyces,Streptomyces)100,(Halobacterium,Haroarcula));
(Sinorhizobium,(Nocardia,(Mycobacterium,Mycobacterium)100)100);
(Nostos,(Escherichia,(Deinococcus,Erwinia)84)84);
(Clostridium,(Enterococcus,(Listeria,Listeria)100)100);
(((Bordetella,Bordetella)63,Bordetella)100,(Vibrio,Vibrio));
(Ralstonia,(((((Vibrio,Vibrio)46,Vibrio)68,Vibrio)78,Shewanella)95,Idiomarina));
(Gluconobacter,((Pseudomonas,Pseudomonas)100,Idiomarina));
(Geobacter,(Streptococcus,(Bacillus,Geobacillus)93)93);
((Clostridium,Clostridium)100,(Bacillus,Bacillus));
(Mycoplasma,(Treponema,(Vibrio,Vibrio)100)100);
(Mesorhizobium,(Streptomyces,(Nocardia,Streptomyces)100)100);
(Symbiobacterium,((Dehalococcoides,(Legionella,(((Pseudomonas,(Pseudomonas,Pseudomonas)54)100,(((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)79)100)100,(((Chromobacterium,Neisseria)99,((Ralstonia,(Burcholderia,Burcholderia)100)99,(((Bordetella,Bordetella)81,Bordetella)100,Azoarcus)49)55)48,Nitrosomonas)98)75,(Methylococcus,Coxiella)51)33)70,((Francizella,Acinetobacter)78,(Idiomarina,(Shewanella,(((Haemophilus,(Mannheimia,Pasteurella)53)100,(((Yersinia,Yersinia)100,(Erwinia,Photorhabdus)48)79,(Salmonella,(Shigella,Escherichia)100)100)100)69,(Vibrio,(Vibrio,(Vibrio,Vibrio)75)100)99)100)55)90)42)52)100)85,(Geobacillus,(Listeria,Listeria)100)100)100);
(((Vibrio,(Vibrio,Vibrio)41)33,Vibrio)93,(Agrobacterium,(Mesorhizobium,(Brucella,(Brucella,Brucella)96)100)100)100);
(Bartonella,((Yersinia,Yersinia)100,(Ralstonia,(Vibrio,Xanthomonas)33)100)100);
((Clostridium,Clostridium)94,(Mannheimia,(Bacillus,Bacillus)100)100);
((Brucella,(Brucella,Brucella)69)100,(Chromobacterium,(Salmonella,(Shigella,Escherichia)99)100)100);
(Desulfovibrio,(Sinorhizobium,(Mesorhizobium,Agrobacterium)48)48);
(((Aeropyrum,((Streptomyces,Methanopyrus)95,Archhaeoglobus)82)53,Pyrobaculum)100,(Sulforobus,Sulforobus));
(Methanopyrus,(Agrobacterium,(Pirellula,Pirellula)100)100);
((Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)83)90)76,((Symbiobacterium,(Bacillus,(Geobacillus,Bacillus)84)93)86,((Bifidobacterium,Propionibacterium)83,((Streptomyces,Streptomyces)99,(Mycobacterium,Mycobacterium)100)44)100)100);
(Clostridium,(Listeria,(Bacillus,Bacillus)100)100);
((((((((((((Salmonella,(Escherichia,Shigella)97)94,Erwinia)47,(Photorhabdus,(Yersinia,Yersinia)100)87)82,((Buchnera,Buchnera)78,(Blochmannia,Wigglesworthia)79)76)41,(Haemophilus,(Pasteurella,Mannheimia)28)100)65,Shewanella)36,(Vibrio,(Vibrio,(Vibrio,Vibrio)65)67)100)55,Idiomarina)77,(Pseudomonas,(Pseudomonas,Pseudomonas)71)100)32,Acinetobacter)74,(((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)89)67)100,Legionella)54,(Francizella,Coxiella)18)33)40,(Nitrosomonas,(Methylococcus,(Chromobacterium,(Azoarcus,((Bordetella,(Bordetella,Bordetella)84)100,(Ralstonia,(Burcholderia,Burcholderia)100)84)93)78)82)34)34);
(Methanobacterium,((Xanthomonas,Vibrio)34,(Nocardia,(Mycobacterium,Mycobacterium)100)93)93);
((Streptococcus,(Streptococcus,Streptococcus)100)99,((Mannheimia,Pasteurella)100,(Neisseria,(Synechococcus,(Vibrio,Vibrio)100)96)89)89);
(Caulobacter,(((Xanthomonas,Xanthomonas)40,Xylella)16,Xanthomonas));
((Methylococcus,(Synechosystis,Nitrosomonas)68)100,(Nostos,Gloeobacter));
(Nostos,((Thermus,Mycobacterium)34,Agrobacterium));
(Clostridium,((Dehalococcoides,Legionella)54,((Bdellovibrio,(Porphyromonas,(Bacteroides,Bacteroides)100)100)85,(Pirellula,Pirellula)100)29)29);
(Haroarcula,(((Synechosystis,Thermosynechococcus)96,Nostos)96,Synechococcus));
(Clostridium,(Oceanobacillus,(Bacillus,Bacillus)100)100);
(((Bradyrhizobium,Streptomyces)52,Erwinia)100,(Pirellula,Pirellula));
((((((Brucella,Brucella)67,Brucella)100,(Sinorhizobium,Agrobacterium)99)54,Mesorhizobium)99,Rickettsia)100,(Pirellula,Pirellula));
((Clostridium,Clostridium)100,((Bacillus,Bacillus)96,(Streptococcus,Streptococcus)100)100);
(Aquifex,((Francizella,((Methylococcus,((Acinetobacter,(Coxiella,(Legionella,(Pseudomonas,(Pseudomonas,Pseudomonas)58)100)50)27)56,((Shewanella,(Idiomarina,(((Haemophilus,Mannheimia)68,Pasteurella)100,((Vibrio,(Vibrio,(Vibrio,Vibrio)68)76)100,((Erwinia,(Photorhabdus,(Yersinia,Yersinia)100)41)72,(Salmonella,(Escherichia,Shigella)96)98)100)45)42)69)100,(Xylella,((Xanthomonas,Xanthomonas)56,Xanthomonas)99)100)9)32)67,((Nitrosomonas,((((Bordetella,Bordetella)100,Bordetella)100,(Ralstonia,(Burcholderia,Burcholderia)100)97)65,Azoarcus)55)81,(Chromobacterium,Neisseria)100)97)50)99,(((Treponema,Treponema)100,(((Rickettsia,(Rickettsia,Rickettsia)100)100,(Wolbachia,(Ehrlichia,Anaplasma)78)100)100,(Gluconobacter,(Zymomonas,((Silicibacter,((Bradyrhizobium,Rhodopseudomonas)100,(((Sinorhizobium,Agrobacterium)98,(Mesorhizobium,(Brucella,(Brucella,Brucella)62)100)74)38,(Bartonella,Bartonella)100)99)100)38,Caulobacter)38)70)55)97)9,(((((((((Nostos,Synechosystis)81,(Thermosynechococcus,Gloeobacter)84)54,(Synechococcus,Prochlorococcus)79)92,(Symbiobacterium,((((Lactobacillus,Lactobacillus)100,Lactobacillus)95,(Enterococcus,(Lactococcus,(((Streptococcus,(Streptococcus,Streptococcus)76)62,Streptococcus)58,Streptococcus)68)99)91)97,(((Geobacillus,Bacillus)56,((Bacillus,Bacillus)99,((Bacillus,Bacillus)100,Oceanobacillus)52)42)43,((Listeria,Listeria)100,(Staphylococcus,Staphylococcus)100)25)47)100)57)13,((Clostridium,(Clostridium,Clostridium)37)100,Thermoanaerobacter)18)5,(Desulfotalea,Geobacter)75)4,(Parachlamydia,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)100)75)100)100)7,(((Fusobacterium,Bdellovibrio)18,(Campylobacter,((Helicobacter,Helicobacter)68,Wolinella)76)100)8,((Porphyromonas,(Bacteroides,Bacteroides)100)100,Leptospira)19)1)1,(Chlorobium,((Dehalococcoides,Thermotoga)9,(((Deinococcus,Thermus)100,Desulfovibrio)26,((Bifidobacterium,Leifsonia)71,(Propionibacterium,((Streptomyces,Streptomyces)100,((Nocardia,(Corynebacterium,(Corynebacterium,Corynebacterium)100)100)46,(Mycobacterium,Mycobacterium)100)67)51)44)100)28)5))1)21)21);
(Methylococcus,(Archhaeoglobus,((Methanobacterium,Methanobacterium)99,(Methanosarcina,Methanosarcina)100)42)42);
(Symbiobacterium,(((((Chromobacterium,(Xanthomonas,Xanthomonas)100)67,Desulfovibrio)58,Mannheimia)67,(Leptospira,(Chlorobium,Methylococcus)95)69)100,Thermus));
(Mesorhizobium,((Sinorhizobium,Burcholderia)96,Ralstonia));
(Deinococcus,(Wolinella,(Ralstonia,(Agrobacterium,(Vibrio,(Erwinia,(Yersinia,Yersinia)100)100)83)60)63)63);
(Bordetella,(Propionibacterium,(Streptomyces,Streptomyces)100)100);
(((Shigella,Escherichia)100,Salmonella)100,(Streptomyces,Streptomyces));
((Bacillus,Bacillus)100,(Clostridium,Clostridium));
(Symbiobacterium,(Bradyrhizobium,((Erwinia,(Salmonella,Escherichia)100)96,(Nocardia,(Corynebacterium,(Streptomyces,Streptomyces)100)50)97)84)84);
(Lactobacillus,(((Bacteroides,Bacteroides)100,Porphyromonas)100,Silicibacter));
((Rhodopseudomonas,Bradyrhizobium)82,((Silicibacter,Azoarcus)80,(Xanthomonas,Ralstonia)100)100);
((((Nostos,Rhodopseudomonas)18,Sulforobus)22,((Mycobacterium,Mycobacterium)100,(Nocardia,Streptomyces)65)100)60,(Thermococcus,(Methanosarcina,Methanosarcina)100)100);
(((Idiomarina,(Pasteurella,Acinetobacter)89)71,(Mesorhizobium,(Brucella,(Brucella,Brucella)87)100)100)100,(Pirellula,Pirellula));
((Clostridium,Clostridium)89,(Bacillus,(Oceanobacillus,Bacillus)96)96);
((Propionibacterium,Wigglesworthia)86,(Lactobacillus,Lactobacillus));
(Methanosarcina,(((Pseudomonas,Nocardia)82,(Streptomyces,Streptomyces)100)100,Agrobacterium));
(Pseudomonas,(((Staphylococcus,Bacillus)74,Lactobacillus)96,Bacillus));
(Synechococcus,((Nitrosomonas,Campylobacter)63,((Salmonella,Silicibacter)49,((Zymomonas,(Gluconobacter,(Burcholderia,(Pasteurella,Neisseria)100)69)98)42,(Sinorhizobium,(Bordetella,(Bordetella,Bordetella)100)100)36)46)55)55);
(Pyrobaculum,(Thermoplasma,(Sulforobus,Sulforobus)98)98);
((Gloeobacter,Thermosynechococcus)26,(Porphyromonas,Gluconobacter));
(Symbiobacterium,((Gloeobacter,Corynebacterium)59,Thermus));
(Clostridium,(Streptococcus,((Gluconobacter,Zymomonas)94,(Xanthomonas,Xanthomonas)100)93)93);
(Methanosarcina,((Mycobacterium,Mycobacterium)16,Photorhabdus));
(Lactobacillus,((Mesorhizobium,Pyrobaculum)100,Treponema));
(Clostridium,(((Mannheimia,(Vibrio,Vibrio)100)66,((Agrobacterium,(Mesorhizobium,Sinorhizobium)100)68,(Bacteroides,(Erwinia,Yersinia)100)51)58)53,(Bacillus,(Pyrobaculum,Burcholderia)100)72)72);
(((Nitrosomonas,Chromobacterium)39,((Ralstonia,(Burcholderia,Burcholderia)100)66,(Azoarcus,((Bordetella,Bordetella)51,Bordetella)100)51)52)43,(Francizella,(((((((((((Yersinia,Yersinia)100,(Photorhabdus,(Erwinia,(Salmonella,(Escherichia,Shigella)86)95)52)27)69,((Wigglesworthia,(Buchnera,Buchnera)78)70,Blochmannia)64)56,(Mannheimia,(Haemophilus,Pasteurella)88)100)41,Shewanella)48,(Vibrio,(Vibrio,(Vibrio,Vibrio)89)89)99)48,Idiomarina)84,Acinetobacter)49,(Pseudomonas,(Pseudomonas,Pseudomonas)57)100)41,Legionella)26,(Coxiella,(Methylococcus,(Xanthomonas,(Xanthomonas,Xanthomonas)12)100)69)53)22)22);
((((Brucella,Brucella)73,Brucella)100,Agrobacterium)99,((Pseudomonas,Bradyrhizobium)67,(Bordetella,(Bordetella,Bordetella)47)100)100);
(((Bacillus,Oceanobacillus)99,Bacillus)100,(Streptomyces,Streptomyces));
(Neisseria,(Xylella,(Xanthomonas,Xanthomonas)100)100);
(Desulfovibrio,(Haemophilus,(Bordetella,(Methylococcus,(Chromobacterium,(Erwinia,(Salmonella,Photorhabdus)77)91)60)54)43)43);
(Symbiobacterium,(Mesorhizobium,(Yersinia,Yersinia)100)100);
(Campylobacter,((((Vibrio,(Vibrio,Vibrio)99)75,Vibrio)100,((Azoarcus,Shewanella)74,Idiomarina)79)100,(Neisseria,(Haemophilus,Mannheimia)97)66)66);
(Porphyromonas,(Zymomonas,(Francizella,Xanthomonas)100)100);
(Methylococcus,(Rhodopseudomonas,(Zymomonas,Mesorhizobium)45)45);
(Corynebacterium,(((Oceanobacillus,Staphylococcus)74,Bacillus)91,Geobacillus));
(Pyrobaculum,((Sulforobus,Sulforobus)100,Aeropyrum));
(Synechococcus,(Burcholderia,(Yersinia,Yersinia)100)100);
(Caulobacter,((((Photorhabdus,(Yersinia,Yersinia)100)62,Erwinia)97,(Salmonella,(Escherichia,Shigella)100)84)99,((Idiomarina,Shewanella)59,(Vibrio,Vibrio)98)52)52);
((Oceanobacillus,Streptococcus)48,(Corynebacterium,(Corynebacterium,Corynebacterium)97)97);
(Desulfovibrio,(Methanopyrus,(Methanobacterium,(Methanobacterium,Thermococcus)74)96)96);
(Haroarcula,(((Clostridium,Legionella)49,Xanthomonas)60,Mesorhizobium));
((Erwinia,Caulobacter)100,(Bacillus,Bacillus));
(((Bordetella,Bordetella)70,Bordetella)100,(Photorhabdus,(Vibrio,(Pseudomonas,Pseudomonas)96)100)100);
(Bacillus,((Pseudomonas,Sinorhizobium)86,(Pirellula,Pirellula)100)100);
(Desulfotalea,((((((((Salmonella,(Escherichia,Shigella)83)66,(Erwinia,(Yersinia,Yersinia)100)73)67,Photorhabdus)98,(Vibrio,(Vibrio,(Vibrio,Vibrio)67)62)98)94,Shewanella)69,Idiomarina)39,Pseudomonas)28,Coxiella));
(Nostos,((Vibrio,Bartonella)60,((Rhodopseudomonas,(Sinorhizobium,Mesorhizobium)69)61,(Azoarcus,(Nitrosomonas,(Bordetella,Bordetella)100)66)97)39)39);
(Mesorhizobium,((Burcholderia,Burcholderia)18,Bordetella));
(Rickettsia,(Shewanella,(((Yersinia,Yersinia)100,(Salmonella,(Shigella,Escherichia)100)98)93,((Pseudomonas,Pseudomonas)48,(Burcholderia,Burcholderia)100)70)76)76);
(Photorhabdus,(Nocardia,(Streptomyces,Streptomyces)93)93);
(Nitrosomonas,((Escherichia,Shigella)100,(Pseudomonas,(Vibrio,(Yersinia,Yersinia)100)99)64)64);
((Archhaeoglobus,Haroarcula)98,((Corynebacterium,Nocardia)94,(Silicibacter,((((Bordetella,Bordetella)91,Bordetella)100,(Azoarcus,Pseudomonas)31)26,(Ralstonia,(Burcholderia,Burcholderia)100)96)47)62)62);
((Rhodopseudomonas,((Geobacter,Pseudomonas)86,(Mesorhizobium,Agrobacterium)60)62)99,(Lactococcus,(Listeria,Listeria)100)100);
(Methylococcus,(Leifsonia,(((Propionibacterium,(Corynebacterium,(Corynebacterium,Corynebacterium)99)100)32,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)99)100)98)33,(Streptomyces,Streptomyces)100)46)46);
((Vibrio,(Pseudomonas,Pseudomonas)100)67,(((Bordetella,Bordetella)79,Bordetella)100,(Burcholderia,Burcholderia)100)100);
((Nostos,Synechosystis)59,(Leptospira,((Pseudomonas,Pseudomonas)100,(Silicibacter,(Synechococcus,Agrobacterium)98)100)68)68);
((Clostridium,Clostridium)57,(Treponema,(((((((((((Erwinia,(Yersinia,Yersinia)100)99,Photorhabdus)81,(Salmonella,(Escherichia,Shigella)98)91)100,((Mannheimia,Haemophilus)100,(Vibrio,(Vibrio,(Vibrio,Vibrio)63)97)99)60)25,Shewanella)31,Idiomarina)15,((((Burcholderia,Burcholderia)100,(Ralstonia,((Bordetella,Bordetella)52,Bordetella)100)49)65,(Neisseria,Chromobacterium)97)82,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)99)94)100)24)25,Acinetobacter)91,(Bdellovibrio,Clostridium)27)40,(Campylobacter,((Helicobacter,Wolinella)41,Helicobacter)71)100)89,(Bacillus,(Staphylococcus,Staphylococcus)83)99)93)93);
(((Bacillus,Bacillus)100,Bacillus)100,(Clostridium,Clostridium));
((Pseudomonas,Xanthomonas)41,(Bordetella,(Shewanella,(Photorhabdus,Chromobacterium)78)90)90);
(Symbiobacterium,((((((((Geobacillus,(Bacillus,Bacillus)76)65,Bacillus)37,Oceanobacillus)27,((Bacillus,Bacillus)100,(Staphylococcus,Staphylococcus)100)28)29,(Listeria,Listeria)100)43,(Lactobacillus,Enterococcus)35)37,(Lactobacillus,Lactobacillus)100)45,(Streptococcus,(Streptococcus,(Streptococcus,(Streptococcus,Streptococcus)68)54)50)100)100);
(Fusobacterium,(Shewanella,((Pseudomonas,(Pseudomonas,Pseudomonas)95)63,((Bordetella,(Bordetella,Bordetella)36)100,((Nitrosomonas,Chromobacterium)8,(Azoarcus,(Ralstonia,(Burcholderia,Burcholderia)100)84)33)26)45)49)49);
(Agrobacterium,(Chromobacterium,(Pseudomonas,(Acinetobacter,(Xanthomonas,(Ralstonia,Burcholderia)96)52)100)32)32);
(Methanosarcina,(((Vibrio,Vibrio)89,Vibrio)100,Clostridium));
(Pyrobaculum,(Archhaeoglobus,(((Nanoarchaeum,(Sulforobus,Sulforobus)97)42,(((((Halobacterium,Haroarcula)100,(Methanosarcina,Methanosarcina)100)55,Methanobacterium)70,Methanopyrus)47,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)80)96)94)39)8,(Aeropyrum,((Methanobacterium,Methanobacterium)99,(Picrophilus,(Thermoplasma,Thermoplasma)55)100)17)3)60)60);
(((((Corynebacterium,Corynebacterium)67,Corynebacterium)99,(Mycobacterium,Mycobacterium)100)76,Propionibacterium)100,(Pirellula,Pirellula));
(Blochmannia,((Bordetella,Bordetella)100,(Burcholderia,Burcholderia)100)100);
(Symbiobacterium,((((Mannheimia,(Chromobacterium,(Xanthomonas,Xanthomonas)100)56)91,(Leptospira,(Chlorobium,Methylococcus)56)100)47,Desulfovibrio)100,Thermus));
(Bacteroides,((Mannheimia,Bradyrhizobium)97,(Yersinia,Yersinia)100)100);
(Symbiobacterium,(Dehalococcoides,((Thermoanaerobacter,((Bacillus,Bacillus)99,(Bacillus,Geobacillus)54)100)63,(Bacillus,Clostridium)100)47)47);
(Thermotoga,(Acinetobacter,(Symbiobacterium,(Listeria,Listeria)100)72)72);
(Sinorhizobium,(Idiomarina,(Pseudomonas,Pseudomonas)100)100);
(Haemophilus,(Streptococcus,(Staphylococcus,Staphylococcus)99)99);
(Thermoanaerobacter,(Deinococcus,(Streptomyces,(Clostridium,(Synechococcus,(Pirellula,Pirellula)100)92)54)57)57);
(((Xanthomonas,(Xanthomonas,Xanthomonas)80)61,Xylella)100,(Mesorhizobium,(Caulobacter,Bradyrhizobium)54)54);
(((Pseudomonas,Pseudomonas)100,Agrobacterium)100,(Streptomyces,Streptomyces));
(Halobacterium,(Deinococcus,((Thermoanaerobacter,(Clostridium,Clostridium)94)67,(((((((Bacillus,Bacillus)95,Geobacillus)60,(Bacillus,Bacillus)100)50,(Oceanobacillus,Bacillus)84)30,(Staphylococcus,Staphylococcus)100)59,(Bdellovibrio,(Porphyromonas,(Bacteroides,Bacteroides)96)100)72)30,(Mycoplasma,(Phytoplasma,((Symbiobacterium,(Thermococcus,(Pyrobaculum,Thermoplasma)31)47)37,(((Mycoplasma,Ureaplasma)77,Mycoplasma)85,(Gluconobacter,((Mycoplasma,Mycoplasma)100,((Mycoplasma,(Mycoplasma,Mycoplasma)33)97,(Thermotoga,(((Sinorhizobium,(Coxiella,(Pirellula,Pirellula)100)62)47,Zymomonas)93,((Streptococcus,(Streptococcus,Streptococcus)65)100,(Lactobacillus,(Listeria,Listeria)100)58)100)100)75)1)1)5)13)5)7)63)57)71)71);
((Silicibacter,Bradyrhizobium)100,(Pirellula,Pirellula));
((Aeropyrum,Methanosarcina)84,(Gloeobacter,((((Rhodopseudomonas,Bradyrhizobium)100,Desulfovibrio)56,(Deinococcus,(Thermus,Bordetella)41)71)57,(Methanobacterium,(Pirellula,Pirellula)100)32)37)37);
(Corynebacterium,((Brucella,Brucella)100,Caulobacter));
((Thermosynechococcus,Synechococcus)100,(Pirellula,Pirellula));
(Silicibacter,((((((Xanthomonas,(Xanthomonas,Xanthomonas)47)100,Salmonella)16,((Vibrio,Vibrio)100,(Pseudomonas,(Pseudomonas,Pseudomonas)70)100)64)46,Vibrio)47,(Escherichia,Shigella)100)92,(Yersinia,Yersinia)100)100);
((((Leifsonia,(Corynebacterium,(Corynebacterium,Corynebacterium)98)99)39,(Streptomyces,Streptomyces)99)46,((Propionibacterium,Bifidobacterium)55,(Nocardia,(Mycobacterium,Mycobacterium)100)70)45)100,((Sinorhizobium,Agrobacterium)81,(Brucella,(Brucella,Brucella)100)100)100);
(Staphylococcus,((Mycoplasma,(Mycoplasma,Mycoplasma)54)76,(Streptococcus,Streptococcus)74)74);
(Neisseria,((Idiomarina,(Shewanella,(Vibrio,Vibrio)61)81)67,(Shigella,(Erwinia,(Yersinia,Yersinia)100)56)89)89);
(Mycobacterium,(((Tropheryma,Leifsonia)98,Deinococcus)100,Mycobacterium));
(Streptomyces,((Nocardia,Bdellovibrio)70,Mesorhizobium));
(Desulfotalea,(((Bordetella,Bordetella)88,Bordetella)100,Idiomarina));
(Leptospira,((Pseudomonas,(Chromobacterium,(Xanthomonas,(Xanthomonas,Xanthomonas)62)100)45)63,((Salmonella,(Shigella,Escherichia)100)72,(Yersinia,Yersinia)100)100)100);
(((Mycobacterium,Mycobacterium)100,Mycobacterium)100,(Caulobacter,Silicibacter));
(((Legionella,Vibrio)70,Bradyrhizobium)100,(Pirellula,Pirellula));
(Fusobacterium,(((Shewanella,Idiomarina)100,(Xanthomonas,Xanthomonas)100)100,Bacillus));
(Fusobacterium,((Thermoanaerobacter,Porphyromonas)55,((((Agrobacterium,Mesorhizobium)52,Silicibacter)50,Staphylococcus)100,(Symbiobacterium,(Burcholderia,Burcholderia)100)45)100)100);
(Desulfotalea,(((Mannheimia,(Ralstonia,((Bordetella,Bordetella)80,Bordetella)100)100)39,Chromobacterium)32,((Xanthomonas,Xanthomonas)100,(Escherichia,(Erwinia,(Yersinia,Yersinia)100)99)100)50)50);
((((Pseudomonas,Acinetobacter)100,Silicibacter)60,Photorhabdus)100,(Bradyrhizobium,Rhodopseudomonas));
(((Methanobacterium,Methanobacterium)100,Methanobacterium)100,(Clostridium,Clostridium));
((Clostridium,(Clostridium,Clostridium)53)93,(((Lactobacillus,Lactobacillus)100,((Lactobacillus,Enterococcus)97,(Lactococcus,(Streptococcus,(Streptococcus,(Streptococcus,(Streptococcus,Streptococcus)32)66)72)99)85)96)72,((Thermoanaerobacter,(Staphylococcus,Staphylococcus)100)64,((Symbiobacterium,(Bifidobacterium,(Synechosystis,Nostos)100)62)30,(Leifsonia,(Propionibacterium,((Corynebacterium,(Corynebacterium,Corynebacterium)80)34,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)99)92)100)83)35)90)90);
((((Shewanella,(((Mannheimia,(Haemophilus,Pasteurella)97)100,((Salmonella,(Escherichia,Shigella)100)100,(Erwinia,(Photorhabdus,(Yersinia,Yersinia)100)67)47)100)100,(Vibrio,(Vibrio,(Vibrio,Vibrio)97)99)100)97)94,Idiomarina)87,((Coxiella,Legionella)52,(Methylococcus,(Pseudomonas,(Pseudomonas,Pseudomonas)100)100)31)46)100,(Nitrosomonas,((Bordetella,(Bordetella,Bordetella)100)100,(Azoarcus,(Chromobacterium,(Burcholderia,Burcholderia)100)36)46)30)30);
(((Buchnera,(Salmonella,Haemophilus)80)61,Coxiella)100,((Pyrococcus,Pyrococcus)100,(Picrophilus,(Thermoplasma,Thermoplasma)100)100)100);
(Desulfovibrio,(Caulobacter,(Silicibacter,(((Brucella,Brucella)94,Brucella)100,(Bartonella,Bartonella)100)100)100)100);
(Aquifex,(((Chlamydophila,Chlamydophila)75,Chlamydophila)100,(Pirellula,Pirellula)100)100);
(Nocardia,(Silicibacter,(Bordetella,(Bradyrhizobium,Rhodopseudomonas)100)64)64);
((Caulobacter,Methylococcus)100,(Gloeobacter,Nostos));
(Gloeobacter,(Xanthomonas,(Pseudomonas,Nitrosomonas)90)90);
(((((Vibrio,Vibrio)81,Vibrio)93,Vibrio)100,(Pseudomonas,(Pseudomonas,Pseudomonas)97)100)100,(Porphyromonas,(Bacteroides,Bacteroides)100)100);
(Bdellovibrio,((((((Vibrio,Vibrio)80,Vibrio)40,Vibrio)98,Shewanella)79,Francizella)55,(Helicobacter,Campylobacter)100)100);
(Mesorhizobium,((Vibrio,Idiomarina)84,(Vibrio,(Silicibacter,(Ralstonia,Bordetella)100)58)57)57);
(((((Mycobacterium,Mycobacterium)100,Mycobacterium)98,Azoarcus)96,Mesorhizobium)100,(Bacillus,Bacillus));
(Symbiobacterium,(Propionibacterium,((Thermoanaerobacter,((Geobacillus,Bacillus)100,Clostridium)80)73,(Clostridium,(Listeria,Listeria)100)68)87)87);
(((((Bacillus,Bacillus)47,Bacillus)60,Fusobacterium)99,Clostridium)100,(Methanosarcina,Methanosarcina));
(Treponema,(Thermus,(Desulfovibrio,(Helicobacter,Helicobacter)100)59)59);
(Azoarcus,(Xanthomonas,(Xanthomonas,(Photorhabdus,Pseudomonas)95)81)81);
(Gloeobacter,(Caulobacter,(Bdellovibrio,((Xanthomonas,(Xanthomonas,Xanthomonas)99)100,(Streptomyces,Streptomyces)100)42)59)59);
((Desulfovibrio,Dehalococcoides)100,((Methanopyrus,(Methanobacterium,(Methanobacterium,Methanobacterium)80)73)72,(Archhaeoglobus,(Methanosarcina,Methanosarcina)100)72)72);
(Dehalococcoides,(Methanobacterium,(((Methanosarcina,Methanosarcina)100,(Haroarcula,Halobacterium)100)96,(Thermoplasma,Thermoplasma)100)48)48);
(Oceanobacillus,(Azoarcus,(Pirellula,Pirellula)100)100);
(Gloeobacter,(Mesorhizobium,((Synechosystis,Propionibacterium)50,(Mycobacterium,Mycobacterium)100)62)62);
(Streptomyces,((Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)96)30)98,Parachlamydia));
(Gluconobacter,((Erwinia,Chromobacterium)65,(Bordetella,Bordetella)100)100);
(((((((Brucella,Brucella)68,Brucella)100,(Bartonella,Bartonella)100)43,Sinorhizobium)53,Mesorhizobium)100,(Bradyrhizobium,Rhodopseudomonas)98)100,(Azoarcus,Idiomarina));
((Pseudomonas,(Mesorhizobium,Pseudomonas)87)94,(Agrobacterium,Sinorhizobium));
((Prochlorococcus,(Synechosystis,Synechococcus)87)65,((Pirellula,Pirellula)100,(Gluconobacter,((((Vibrio,(Vibrio,Vibrio)90)68,Shewanella)86,Idiomarina)100,(Pseudomonas,Pseudomonas)99)51)51)51);
(Leptospira,(Bdellovibrio,(Geobacter,(((((((((Bordetella,Bordetella)58,Bordetella)100,(Ralstonia,Burcholderia)100)96,Azoarcus)73,Nitrosomonas)68,Chromobacterium)92,(Xanthomonas,(Xanthomonas,Xanthomonas)85)100)52,((Methylococcus,(Pseudomonas,(Pseudomonas,Pseudomonas)97)100)99,(Acinetobacter,((((Salmonella,(Escherichia,Shigella)100)100,((Photorhabdus,(Yersinia,Yersinia)100)54,Erwinia)72)100,(Vibrio,(Vibrio,(Vibrio,Vibrio)98)100)100)99,(Shewanella,Idiomarina)99)95)80)58)100,(Caulobacter,(Silicibacter,((Bradyrhizobium,Rhodopseudomonas)100,((Agrobacterium,Sinorhizobium)99,(Mesorhizobium,(Brucella,(Brucella,Brucella)100)100)88)98)100)60)100)48)57)57);
(Acinetobacter,(((Rickettsia,Rickettsia)100,Rickettsia)100,Caulobacter));
((Rhodopseudomonas,Bradyrhizobium)100,(Shigella,Escherichia));
((((Methylococcus,(Azoarcus,(Burcholderia,Ralstonia)51)31)42,(Shewanella,Nitrosomonas)31)35,(Neisseria,(Pseudomonas,(Pseudomonas,Pseudomonas)69)100)48)100,((Agrobacterium,Sinorhizobium)93,(Mesorhizobium,(Brucella,(Brucella,Brucella)63)100)82)82);
(Azoarcus,((Escherichia,Salmonella)97,Vibrio));
(Thermoanaerobacter,((((((Leifsonia,(Propionibacterium,(Streptomyces,Streptomyces)100)39)24,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)99)98)26,(Corynebacterium,(Corynebacterium,Corynebacterium)98)97)35,Tropheryma)59,Bifidobacterium)100,(Geobacillus,(Lactobacillus,Enterococcus)94)63)63);
(Aquifex,(Campylobacter,(Wolinella,(Helicobacter,Helicobacter)66)63)63);
(((Bacteroides,Bacteroides)100,Porphyromonas)91,(Streptococcus,Enterococcus));
(Aquifex,(((Phytoplasma,(((Bacillus,Bacillus)100,(Geobacillus,(((Staphylococcus,Staphylococcus)95,(Enterococcus,(Bacillus,Bacillus)99)22)14,(Listeria,Listeria)100)13)11)40,(Oceanobacillus,(Clostridium,(Clostridium,Clostridium)25)100)2)28)47,(Mycoplasma,(Ureaplasma,Mycoplasma)78)63)19,((((((Gluconobacter,(Silicibacter,(Rickettsia,Rickettsia)100)47)73,(Bartonella,Bartonella)100)25,Caulobacter)68,((Mycoplasma,Mycoplasma)86,Mycoplasma)98)15,(((Campylobacter,Helicobacter)61,Helicobacter)49,Wolinella)83)13,(((((((((((Photorhabdus,(Yersinia,Yersinia)100)48,Erwinia)69,(Salmonella,(Escherichia,Shigella)100)84)99,Idiomarina)52,((Pasteurella,Mannheimia)93,Haemophilus)100)42,(Vibrio,(Vibrio,Vibrio)85)82)99,Legionella)46,(((Pseudomonas,(Pseudomonas,Pseudomonas)66)99,((Xylella,Coxiella)23,(((Azoarcus,(Burcholderia,Burcholderia)100)79,(Neisseria,Chromobacterium)46)29,Nitrosomonas)29)23)24,Acinetobacter)21)35,Francizella)69,(Chlorobium,Bacteroides)98)33,(Borrelia,Borrelia)100)5)26)26);
((Lactobacillus,Lactobacillus)78,(Bifidobacterium,Coxiella));
(Thermus,(((Bordetella,(Bordetella,Bordetella)78)100,Azoarcus)65,Ralstonia));
((Geobacter,Bdellovibrio)100,(Helicobacter,Wolinella));
(Desulfotalea,(Vibrio,(Vibrio,Vibrio)94)94);
(Xylella,((Brucella,Brucella)67,Brucella));
(Bacillus,((((Brucella,Brucella)71,Brucella)99,Sinorhizobium)38,Mesorhizobium));
(Buchnera,((Mycoplasma,Mycoplasma)100,Phytoplasma));
(Clostridium,((Pyrococcus,Thermococcus)88,(Pyrococcus,Pyrococcus)100)100);
((Zymomonas,Gluconobacter)100,(Xylella,Chromobacterium));
(Oceanobacillus,(Sinorhizobium,((Corynebacterium,Corynebacterium)100,(Yersinia,Yersinia)100)90)90);
(((Bacteroides,Bacteroides)98,Treponema)97,(Thermotoga,Fusobacterium));
(((Xanthomonas,Xanthomonas)94,Xanthomonas)100,(Gluconobacter,Caulobacter));
(Aquifex,(Gloeobacter,(Nostos,Thermosynechococcus)79)79);
((Methylococcus,(Shewanella,Vibrio)86)100,(Pirellula,Pirellula));
(Thermoanaerobacter,((Bacillus,Clostridium)100,(Vibrio,(Salmonella,(Shigella,Escherichia)100)100)96)96);
(Acinetobacter,(Caulobacter,(Bradyrhizobium,(Brucella,Brucella)100)42)42);
(((((Silicibacter,Azoarcus)92,Nitrosomonas)45,Methylococcus)100,Ralstonia)99,(Thermosynechococcus,(Synechosystis,Nostos)70)70);
(((Azoarcus,Geobacter)100,Desulfovibrio)100,(Methanosarcina,Methanosarcina));
(Caulobacter,(Pasteurella,(Escherichia,Pseudomonas)43)43);
(((((((((((Salmonella,(Escherichia,Shigella)100)100,Erwinia)48,(Yersinia,Yersinia)100)71,Photorhabdus)96,(Mannheimia,(Haemophilus,Pasteurella)70)100)70,(Vibrio,(Vibrio,(Vibrio,Vibrio)97)79)100)100,Shewanella)53,Idiomarina)90,Methylococcus)71,((Pseudomonas,Pseudomonas)86,Pseudomonas)100)97,(Azoarcus,((Burcholderia,Burcholderia)100,(Bordetella,(Bordetella,Bordetella)78)100)83)83);
(Fusobacterium,((Clostridium,(Clostridium,Clostridium)49)59,((Chlorobium,(Chlamydophila,Symbiobacterium)27)18,(((((Thermotoga,(Oceanobacillus,(Bacillus,Bacillus)100)34)9,(((Staphylococcus,Staphylococcus)98,((Listeria,Listeria)100,(Enterococcus,(Lactobacillus,Lactobacillus)100)39)16)5,((Lactobacillus,Bacillus)6,(Lactococcus,(Streptococcus,((Streptococcus,(Streptococcus,Streptococcus)23)47,Streptococcus)54)91)27)4)2)1,(Bacillus,Geobacillus)46)16,Wolinella)28,(((Shewanella,Idiomarina)53,(((Vibrio,Vibrio)77,Vibrio)66,Vibrio)93)64,((Buchnera,Wigglesworthia)89,(Wolbachia,(Rickettsia,(Rickettsia,Rickettsia)79)100)46)18)40)24)27)27);
(Thermotoga,(Thermoanaerobacter,(Treponema,Enterococcus)100)100);
(Methanobacterium,((Brucella,(Brucella,Brucella)67)100,(Lactobacillus,Photorhabdus)99)99);
((Chromobacterium,(Ralstonia,Azoarcus)77)17,((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)95)97)98,((Pseudomonas,Pseudomonas)57,(Methylococcus,(Neisseria,(Acinetobacter,(Legionella,Shewanella)65)63)21)11)10)10);
(Bacteroides,(Xanthomonas,(Yersinia,Yersinia)100)100);
(Oceanobacillus,((Streptomyces,Streptomyces)100,Nocardia));
((Streptococcus,Streptococcus)100,(Pseudomonas,(Staphylococcus,Bradyrhizobium)100)100);
((Fusobacterium,Thermotoga)66,(Thermoanaerobacter,((Clostridium,(Clostridium,Clostridium)38)82,((((Geobacillus,(Oceanobacillus,(Bacillus,Bacillus)100)54)65,(((Bacillus,Bacillus)73,(Staphylococcus,Staphylococcus)100)53,((Listeria,Listeria)100,(Enterococcus,((Lactococcus,(Lactobacillus,(Lactobacillus,Lactobacillus)100)59)46,(Streptococcus,(Streptococcus,((Streptococcus,Streptococcus)52,Streptococcus)33)36)100)29)83)54)20)24,Bacillus)73,(Symbiobacterium,(Thermosynechococcus,Synechococcus)70)41)23)16)16);
(Clostridium,((Methanobacterium,Methanosarcina)79,Sulforobus));
(Desulfovibrio,(((Chlamydophila,Chlamydophila)67,Chlamydophila)72,Chlamydophila));
((((Erwinia,(Salmonella,(Shigella,Escherichia)98)97)27,(Yersinia,Yersinia)100)64,Photorhabdus)99,(Neisseria,Chromobacterium));
(Nostos,(Oceanobacillus,(Staphylococcus,Staphylococcus)100)100);
(Ralstonia,(((Xanthomonas,Xanthomonas)84,Xanthomonas)100,Xylella));
(((Shewanella,((Pasteurella,Mannheimia)100,(((Salmonella,(Escherichia,Shigella)100)97,(Erwinia,Photorhabdus)25)53,(Yersinia,Yersinia)96)100)93)93,((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)82)100)89,((Pseudomonas,(Pseudomonas,Pseudomonas)69)100,Acinetobacter)52)41)56,(Chromobacterium,(Nitrosomonas,(Methylococcus,(Azoarcus,(Ralstonia,(Burcholderia,Burcholderia)100)55)63)15)21)21);
((((((((Brucella,Brucella)51,Brucella)100,Mesorhizobium)77,(Agrobacterium,Sinorhizobium)80)99,(Rhodopseudomonas,Bradyrhizobium)100)61,Caulobacter)21,Gluconobacter)9,((Pseudomonas,(Pseudomonas,Pseudomonas)63)99,(Silicibacter,(Acinetobacter,(Shewanella,Idiomarina)98)92)19)19);
(Symbiobacterium,((((Bacillus,Bacillus)97,(Geobacillus,(Bacillus,Bacillus)100)79)67,Bacillus)100,Oceanobacillus));
(((Clostridium,Clostridium)97,Desulfotalea)100,(Methanosarcina,Methanosarcina));
((((((((((Agrobacterium,(Mesorhizobium,(Brucella,Brucella)100)67)36,Sinorhizobium)100,Gluconobacter)74,(Bordetella,(Bordetella,Bordetella)90)100)22,(Legionella,Silicibacter)36)24,(Burcholderia,Burcholderia)100)100,(Oceanobacillus,Geobacillus)100)100,(Thermoplasma,Thermoplasma)97)98,Pyrobaculum)100,(Pyrococcus,Thermococcus));
(Dehalococcoides,(Agrobacterium,(Rickettsia,Rickettsia)100)100);
(Bradyrhizobium,((Burcholderia,Burcholderia)21,Pseudomonas));
(Methanopyrus,(Desulfovibrio,((Lactobacillus,Lactobacillus)96,(Pirellula,Pirellula)100)80)80);
((Pyrococcus,(Methanobacterium,Thermococcus)69)100,(Streptomyces,Thermus));
((Corynebacterium,Corynebacterium)100,(Pseudomonas,(Nocardia,(((Erwinia,(Shigella,Escherichia)100)90,(Streptomyces,Streptomyces)100)60,(Mycobacterium,Mycobacterium)100)41)87)87);
((Pseudomonas,Shewanella)99,(Bordetella,Azoarcus));
(Chlorobium,((Zymomonas,Caulobacter)86,((Deinococcus,Thermus)54,(Corynebacterium,(Mycobacterium,(Mycobacterium,Mycobacterium)100)96)99)87)87);
(Bdellovibrio,((Legionella,Coxiella)96,Caulobacter));
(Methanobacterium,(((Salmonella,(Shigella,Escherichia)100)92,(Gluconobacter,Zymomonas)66)100,Bifidobacterium));
(Methanosarcina,(Porphyromonas,(Bacteroides,Bacteroides)100)100);
((((((((((Nitrosomonas,(Erwinia,Azoarcus)97)88,(Bordetella,(Bordetella,Bordetella)74)100)44,(Desulfovibrio,Desulfotalea)96)61,(Neisseria,Chromobacterium)97)87,((Methylococcus,(Acinetobacter,(Pseudomonas,Pseudomonas)100)95)33,(Legionella,Idiomarina)56)12)19,(Shewanella,((Vibrio,(Vibrio,(Vibrio,Vibrio)99)98)99,(Mannheimia,(Pasteurella,Haemophilus)52)100)85)47)44,(Ralstonia,(Photorhabdus,Francizella)100)27)23,(Silicibacter,Agrobacterium)99)33,Corynebacterium)65,((Methanobacterium,Methanobacterium)94,(Methanobacterium,(Methanosarcina,Methanosarcina)100)83)83);
(Bacteroides,(Desulfotalea,(Erwinia,((Shewanella,Pseudomonas)59,(Bordetella,((Desulfovibrio,Caulobacter)64,(Mycobacterium,Nitrosomonas)100)57)56)97)74)74);
(((((Pseudomonas,Pseudomonas)100,Shewanella)51,Vibrio)89,Pseudomonas)98,(Azoarcus,(Burcholderia,(Ralstonia,Chromobacterium)100)100)100);
((((Vibrio,(Vibrio,(Vibrio,Vibrio)76)99)86,(Idiomarina,Shewanella)81)64,(Haemophilus,(Erwinia,(Salmonella,(Yersinia,Yersinia)100)68)100)70)100,((Acinetobacter,(Bordetella,(Bordetella,Bordetella)40)100)64,(Xylella,(Methylococcus,Nitrosomonas)100)80)80);
(Methanosarcina,((Bifidobacterium,Lactobacillus)70,(Wolbachia,(Azoarcus,(Parachlamydia,(Bordetella,Bordetella)100)80)81)43)43);
(Idiomarina,(Porphyromonas,(Bacteroides,Bacteroides)100)100);
((((((Bordetella,(Bordetella,Bordetella)99)100,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)43)40)100)17,(Chromobacterium,(Nitrosomonas,Azoarcus)43)87)18,((Coxiella,Francizella)18,((Pseudomonas,(Pseudomonas,Pseudomonas)53)100,(Acinetobacter,Legionella)37)36)18)28,(Ralstonia,(Burcholderia,Burcholderia)100)73)100,(Caulobacter,(Zymomonas,(Rickettsia,(Anaplasma,(Ehrlichia,(Wolbachia,Wolbachia)99)62)78)55)49)49);
((Desulfovibrio,Aquifex)70,(Archhaeoglobus,((Methanobacterium,(Methanobacterium,Methanobacterium)100)95,(Methanopyrus,((Methanosarcina,Methanosarcina)100,(Haroarcula,Halobacterium)100)73)37)91)91);
(Bacillus,((Wolinella,Pseudomonas)59,Geobacter));
(Pyrobaculum,(((Sulforobus,Sulforobus)100,Aeropyrum)67,(Methanopyrus,((((Methanobacterium,((Thermococcus,((Pyrococcus,Pyrococcus)45,Pyrococcus)89)100,(Methanosarcina,Methanosarcina)100)41)35,Archhaeoglobus)15,(Methanobacterium,Methanobacterium)75)36,(Halobacterium,Haroarcula)100)37)71)71);
(Deinococcus,(Azoarcus,(Pseudomonas,Pseudomonas)100)100);
(Bradyrhizobium,((Idiomarina,((((Shewanella,(((Methylococcus,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)58)100)100)73,((Chromobacterium,Ralstonia)100,Nitrosomonas)29)42,(Pseudomonas,(Pseudomonas,Pseudomonas)74)100)79)46,((((Yersinia,Yersinia)100,(Erwinia,(Salmonella,(Escherichia,Shigella)100)100)24)59,Photorhabdus)88,(Vibrio,(Vibrio,(Vibrio,Vibrio)68)99)100)55)18,((Pasteurella,Mannheimia)55,Haemophilus)100)40,(Blochmannia,(Buchnera,Buchnera)99)99)50)100,(Coxiella,Francizella)100)100);
(Desulfovibrio,(((((((Pseudomonas,Pseudomonas)88,Pseudomonas)81,Erwinia)75,Acinetobacter)51,(Shewanella,Idiomarina)100)69,Ralstonia)95,Caulobacter));
(Geobacter,((Azoarcus,Bradyrhizobium)48,Xanthomonas));
(Treponema,(((((Rhodopseudomonas,Bradyrhizobium)100,((Mesorhizobium,(Brucella,(Brucella,Brucella)83)100)77,(Agrobacterium,Sinorhizobium)100)85)88,(Caulobacter,(Francizella,Zymomonas)46)15)30,Silicibacter)50,((Neisseria,Chromobacterium)45,(Azoarcus,((Bordetella,(Bordetella,Bordetella)69)100,(Ralstonia,(Burcholderia,Burcholderia)100)85)97)42)93)93);
(Aquifex,((Synechosystis,Gloeobacter)50,(Pirellula,Pirellula)100)100);
(Gloeobacter,(((Pseudomonas,(Acinetobacter,Pseudomonas)65)65,(Xanthomonas,Xanthomonas)68)68,Thermus));
(((Shigella,Escherichia)100,Salmonella)100,(Desulfovibrio,Geobacter));
(Methanobacterium,((Desulfovibrio,Clostridium)65,Ralstonia));
((Bradyrhizobium,Rhodopseudomonas)100,(Mycobacterium,Mycobacterium));
(((Nostos,Synechosystis)75,Synechococcus)100,(Mycobacterium,Mycobacterium));
((Mycobacterium,Mycobacterium)100,(Ralstonia,(Burcholderia,Burcholderia)100)100);
(Dehalococcoides,(Coxiella,(Bacteroides,Bacteroides)100)100);
((((Bacillus,(Staphylococcus,Oceanobacillus)33)22,Geobacillus)8,((Bacillus,Bacillus)100,(Bacillus,Bacillus)94)44)60,(Deinococcus,(((Methylococcus,((Shewanella,(Sinorhizobium,Agrobacterium)100)69,(Bdellovibrio,(Chromobacterium,((Bordetella,(Bordetella,Bordetella)78)100,(Ralstonia,(Burcholderia,Burcholderia)100)59)100)69)55)50)78,Silicibacter)64,(Corynebacterium,Corynebacterium)100)62)62);
(Pyrobaculum,(Methanopyrus,(((Archhaeoglobus,(Methanobacterium,Methanobacterium)100)32,(Methanosarcina,Methanosarcina)100)5,(((Aeropyrum,(Sulforobus,Sulforobus)100)99,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)33)89)100)32,((Picrophilus,(Thermoplasma,Thermoplasma)99)100,(Halobacterium,Haroarcula)100)25)14)79)79);
(((((((Xanthomonas,(Xanthomonas,Xanthomonas)96)100,(Synechococcus,((Pseudomonas,Pseudomonas)100,(Pirellula,Pirellula)100)100)33)30,Prochlorococcus)22,Parachlamydia)63,((Bradyrhizobium,Rhodopseudomonas)100,(Caulobacter,(Mesorhizobium,(Agrobacterium,Sinorhizobium)92)53)67)100)100,Pyrobaculum)100,(Pyrococcus,Pyrococcus));
((Ralstonia,Caulobacter)100,(Pirellula,Pirellula));
(Nostos,((((Bordetella,Bordetella)85,Bordetella)100,(Burcholderia,Burcholderia)100)76,((Chromobacterium,Pseudomonas)85,(Mesorhizobium,Silicibacter)100)60)60);
(Gloeobacter,(Xanthomonas,(Pirellula,Pirellula)100)100);
(Halobacterium,(Nostos,(Rhodopseudomonas,Bradyrhizobium)100)100);
(((Silicibacter,Helicobacter)90,Bordetella)93,(Lactobacillus,(Lactobacillus,Lactobacillus)100)100);
(Treponema,((((((((((((Erwinia,((Salmonella,(Escherichia,Shigella)100)100,(Yersinia,Yersinia)100)37)29,Photorhabdus)99,(Vibrio,(Vibrio,Vibrio)95)100)55,(Haemophilus,(Mannheimia,Pasteurella)100)100)73,Shewanella)85,Idiomarina)92,(Pseudomonas,(Pseudomonas,Pseudomonas)44)100)76,Methylococcus)31,Azoarcus)55,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)97)94)100)100,Legionella)50,(Desulfovibrio,Bdellovibrio)79)79);
(Bifidobacterium,(((Xylella,Agrobacterium)93,(Gluconobacter,(Pseudomonas,Pseudomonas)90)83)50,(Shigella,Escherichia)100)100);
(((((((Yersinia,Yersinia)100,Salmonella)51,(Escherichia,Shigella)100)95,Shewanella)95,Pasteurella)92,Mannheimia)100,(Methanopyrus,(Methanobacterium,Methanobacterium)89)89);
(Clostridium,((Deinococcus,Streptococcus)80,Mesorhizobium));
(Bacteroides,(((((Bacillus,Bacillus)100,(Bacillus,Bacillus)83)53,Enterococcus)85,(Staphylococcus,Staphylococcus)100)89,(Streptococcus,Streptococcus)100)100);
(Clostridium,(((((((((Brucella,Brucella)75,Brucella)100,Mesorhizobium)79,(Agrobacterium,Sinorhizobium)44)91,Caulobacter)96,Silicibacter)57,Chromobacterium)48,Pseudomonas)52,Lactococcus));
(Silicibacter,(((Vibrio,Vibrio)95,Vibrio)85,Vibrio));
(Aeropyrum,(Pyrobaculum,(Haemophilus,(Clostridium,(Listeria,(Agrobacterium,Xanthomonas)94)94)76)85)85);
((Thermoanaerobacter,Symbiobacterium)56,(((Streptococcus,Streptococcus)67,Enterococcus)100,(Staphylococcus,Staphylococcus)100)100);
(((Enterococcus,Lactobacillus)100,Oceanobacillus)100,(Salmonella,Streptomyces));
(((Haemophilus,Mannheimia)74,Neisseria)100,(Enterococcus,Lactobacillus));
(((Helicobacter,Idiomarina)44,Gloeobacter)94,(Bacillus,(Bacillus,Oceanobacillus)51)51);
((Mesorhizobium,(((Sinorhizobium,((Brucella,Brucella)85,Brucella)100)96,Rhodopseudomonas)40,(Silicibacter,Bradyrhizobium)100)82)99,((((Chromobacterium,Azoarcus)48,(Pseudomonas,(Pseudomonas,Pseudomonas)32)74)12,((Methylococcus,Xanthomonas)25,Xanthomonas)11)39,(Burcholderia,Burcholderia)100)100);
((Pirellula,Pirellula)100,(Bacillus,(Listeria,Listeria)100)100);
(((((((((((Vibrio,(Vibrio,(Vibrio,Vibrio)100)78)97,(Haemophilus,((Erwinia,(Shigella,Escherichia)100)99,(Yersinia,Yersinia)100)81)37)70,Idiomarina)68,Shewanella)50,Methylococcus)92,((Nitrosomonas,(Bordetella,Azoarcus)39)61,(Silicibacter,((Sinorhizobium,(Brucella,(Brucella,Brucella)67)100)100,(Rhodopseudomonas,Bradyrhizobium)100)100)98)7)16,(Pseudomonas,Pseudomonas)100)34,Xylella)100,(Thermus,Deinococcus)76)42,(Desulfovibrio,Archhaeoglobus)25)34,(Haroarcula,(Methanosarcina,Methanosarcina)99)99);
(Corynebacterium,(Lactobacillus,(Bacillus,((Oceanobacillus,Bacillus)76,(Bacillus,(Listeria,Listeria)100)85)43)85)85);
((Haroarcula,(Methanobacterium,(Methanosarcina,Methanosarcina)100)93)100,((Methanopyrus,Thermotoga)93,(Methanobacterium,(Archhaeoglobus,(Methanobacterium,((Desulfovibrio,(Synechococcus,Prochlorococcus)96)31,(((((Geobacillus,(Thermoanaerobacter,(Geobacter,((Wolinella,Clostridium)98,Lactobacillus)42)16)8)23,Staphylococcus)10,(Corynebacterium,(((Synechosystis,Nostos)80,Thermosynechococcus)50,Gloeobacter)92)17)11,Desulfotalea)35,(Pirellula,Pirellula)100)15)50)6)21)24)24);
(Fusobacterium,((Yersinia,Yersinia)100,(Xanthomonas,Xanthomonas)100)100);
((Idiomarina,(Francizella,Legionella)80)79,(Caulobacter,Sinorhizobium));
((Pyrococcus,(Pyrococcus,Pyrococcus)61)100,(Thermotoga,(Streptococcus,(Corynebacterium,Corynebacterium)100)95)95);
(Mesorhizobium,((Pasteurella,(Pseudomonas,Methylococcus)53)55,(Salmonella,(Erwinia,(Yersinia,Yersinia)100)100)100)100);
(((Campylobacter,Helicobacter)47,Wolinella)100,(Wigglesworthia,Blochmannia));
(Clostridium,((((Shewanella,Vibrio)43,(Vibrio,Vibrio)89)97,(Salmonella,(Escherichia,Shigella)100)100)100,Haemophilus));
((((Acinetobacter,Caulobacter)41,(Pseudomonas,(Pseudomonas,Pseudomonas)96)86)83,(Xanthomonas,Xanthomonas)100)98,(Agrobacterium,(Bradyrhizobium,Rhodopseudomonas)100)100);
((Bordetella,Bordetella)100,(Sinorhizobium,Mesorhizobium));
(((Thermococcus,(Pyrococcus,Pyrococcus)69)52,Pyrococcus)100,((Desulfotalea,Geobacter)93,(Thermoanaerobacter,(Methanobacterium,Methanobacterium)99)85)85);
(Thermoanaerobacter,(Desulfotalea,(Bacteroides,Bacteroides)100)100);
((Bacteroides,Bacteroides)98,(Nocardia,Treponema));
(Bacteroides,(Streptomyces,(Pirellula,Pirellula)100)100);
(Gluconobacter,(Methylococcus,((Acinetobacter,(Xylella,Vibrio)35)13,(Chromobacterium,((Nitrosomonas,Azoarcus)83,((Bordetella,(Bordetella,Bordetella)79)100,(Ralstonia,(Burcholderia,Burcholderia)100)95)91)37)84)42)42);
(Bacillus,((Pasteurella,Helicobacter)100,((((Bacillus,Leptospira)50,Agrobacterium)65,Bdellovibrio)69,(Silicibacter,(Pirellula,Pirellula)100)100)97)97);
(Bacillus,((Leptospira,Photorhabdus)80,Shewanella));
(Desulfovibrio,((((Rhodopseudomonas,Bradyrhizobium)100,((Mesorhizobium,(Agrobacterium,Sinorhizobium)100)57,(Brucella,(Brucella,Brucella)87)100)88)44,(Bartonella,Bartonella)100)62,(((Silicibacter,Caulobacter)29,Zymomonas)39,((Rickettsia,(Rickettsia,Rickettsia)94)100,((Ehrlichia,Anaplasma)98,(Wolbachia,Wolbachia)100)100)47)31)31);
(Symbiobacterium,(Yersinia,(Pasteurella,(Listeria,(Thermoanaerobacter,(Enterococcus,(Lactobacillus,Lactobacillus)100)100)64)68)89)89);
(Ralstonia,(Pseudomonas,(Shigella,Escherichia)100)100);
(Pyrobaculum,(((((Thermococcus,Methanobacterium)79,(Pyrococcus,(Pyrococcus,Pyrococcus)88)57)77,Nanoarchaeum)90,Methanopyrus)100,Aeropyrum));
(Caulobacter,(Xanthomonas,(Xanthomonas,Xanthomonas)81)81);
(Picrophilus,((Lactobacillus,Symbiobacterium)96,(((Pseudomonas,(Chlorobium,Legionella)66)51,(Xanthomonas,(Xanthomonas,Xanthomonas)72)100)56,((Streptomyces,(Mycobacterium,Mycobacterium)100)99,(Mycoplasma,(Streptococcus,(Streptococcus,(Streptococcus,Streptococcus)79)70)100)100)76)48)48);
(Haroarcula,(((((Streptococcus,(Streptococcus,Streptococcus)73)66,Streptococcus)75,Lactococcus)99,Enterococcus)100,(Clostridium,(Listeria,(Streptococcus,Lactobacillus)94)87)100)100);
(Clostridium,((Photorhabdus,Corynebacterium)27,Lactococcus));
(((((Salmonella,(Escherichia,Shigella)100)100,(Yersinia,Yersinia)100)46,Erwinia)100,Pseudomonas)100,(Bordetella,(Bordetella,Bordetella)63)63);
(Treponema,(((((Brucella,Brucella)84,Brucella)83,Mesorhizobium)59,Agrobacterium)100,(Ralstonia,Pseudomonas)100)100);
(Parachlamydia,((Ehrlichia,Agrobacterium)65,((Acinetobacter,Chromobacterium)78,(Wolinella,(Campylobacter,(Helicobacter,Helicobacter)84)24)96)22)22);
(Fusobacterium,((((((Bacillus,Bacillus)100,((Oceanobacillus,(Bacillus,Bacillus)92)93,Bacillus)52)100,(Clostridium,(Clostridium,Clostridium)100)100)100,(Rickettsia,Streptomyces)100)100,Desulfotalea)98,Thermoanaerobacter));
(Photorhabdus,((Streptomyces,Streptomyces)100,(Mycobacterium,Mycobacterium)100)100);
(Archhaeoglobus,(Chromobacterium,(Mycobacterium,Mycobacterium)100)100);
(Bradyrhizobium,(Bordetella,((Shewanella,Chromobacterium)76,(Burcholderia,Burcholderia)100)54)54);
(Azoarcus,(Xanthomonas,(Xanthomonas,Xanthomonas)100)100);
((Idiomarina,Corynebacterium)100,(Pirellula,Pirellula));
(Desulfotalea,(Bradyrhizobium,((Caulobacter,Silicibacter)94,(Burcholderia,Burcholderia)100)59)59);
(((((Lactococcus,Lactobacillus)50,Enterococcus)81,(Listeria,Listeria)100)100,(Bacillus,(Bacillus,Bacillus)100)53)100,(Clostridium,Clostridium));
(((((((((Clostridium,(Clostridium,((Listeria,Listeria)100,(Bacillus,Bacillus)100)97)23)32,Thermoanaerobacter)44,Geobacter)45,(Porphyromonas,(Bacteroides,Bacteroides)99)100)83,Thermotoga)100,(Streptomyces,Streptomyces)100)22,(Dehalococcoides,(Pirellula,Pirellula)100)25)51,Chlorobium)100,(Picrophilus,(Thermoplasma,Thermoplasma)100)100);
((Oceanobacillus,Mycoplasma)100,(Corynebacterium,Bifidobacterium));
(Caulobacter,(Chromobacterium,(Vibrio,Vibrio)100)100);
(Clostridium,(((Lactobacillus,(Listeria,Enterococcus)42)36,Bacillus)99,(Leptospira,Thermosynechococcus)98)98);
((Bacteroides,Bacteroides)29,(Borrelia,Bdellovibrio));
(Bradyrhizobium,(((Nostos,Synechosystis)49,Thermosynechococcus)88,Synechococcus));
(Clostridium,((Lactobacillus,Bacillus)36,Bacteroides));
(Deinococcus,(Bacillus,(Staphylococcus,((((((((Streptococcus,Streptococcus)78,Mycoplasma)15,(Mycoplasma,Mycoplasma)32)25,(Mycoplasma,Mycoplasma)98)65,Mycoplasma)100,Corynebacterium)48,Wigglesworthia)100,((Lactococcus,Lactobacillus)45,(Lactobacillus,Lactobacillus)100)100)100)62)62);
(Archhaeoglobus,(Vibrio,(Azoarcus,Pseudomonas)24)24);
(Fusobacterium,(((Burcholderia,Burcholderia)100,(Acinetobacter,Clostridium)95)52,(Treponema,(Pseudomonas,(Pseudomonas,Pseudomonas)83)100)46)46);
(((((((Idiomarina,(Coxiella,(Pseudomonas,(Pseudomonas,Pseudomonas)100)100)58)22,((((Azoarcus,(Chromobacterium,(Bordetella,(Bordetella,Bordetella)97)100)35)52,(Ralstonia,(Burcholderia,Burcholderia)100)100)47,(Methylococcus,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)78)46)100)27)30,(((Wigglesworthia,((Vibrio,(Vibrio,(Vibrio,Vibrio)100)88)100,((Mannheimia,Pasteurella)59,(Neisseria,Haemophilus)33)91)53)7,(Blochmannia,(Erwinia,((Photorhabdus,(Salmonella,(Escherichia,Shigella)99)100)49,(Yersinia,Yersinia)100)49)72)32)53,Shewanella)35)13)59,(Francizella,Legionella)48)21,Acinetobacter)100,Bdellovibrio)56,Geobacter)100,(Chlorobium,(Porphyromonas,(Bacteroides,Bacteroides)100)98)98);
((Agrobacterium,Sinorhizobium)100,(Bordetella,Bordetella));
(Clostridium,(Vibrio,((Enterococcus,Oceanobacillus)97,(Symbiobacterium,(Corynebacterium,Corynebacterium)100)55)55)55);
((((((((((((Desulfotalea,(((((Thermosynechococcus,((Synechosystis,Nostos)45,Gloeobacter)58)64,(Prochlorococcus,Synechococcus)99)100,(Thermotoga,Fusobacterium)9)2,(Propionibacterium,(Tropheryma,((((Mycobacterium,(Mycobacterium,Mycobacterium)99)99,Nocardia)69,(Leifsonia,(Corynebacterium,(Corynebacterium,Corynebacterium)64)72)20)27,(Streptomyces,Streptomyces)94)29)27)76)3,((((((Mycoplasma,(Mycoplasma,Mycoplasma)71)100,(Ureaplasma,(Mycoplasma,((Mycoplasma,Mycoplasma)100,Mycoplasma)70)41)75)59,Mycoplasma)22,Phytoplasma)10,((Clostridium,(Clostridium,Clostridium)76)92,((((Enterococcus,((((Lactococcus,(Streptococcus,Streptococcus)84)33,Streptococcus)48,(Streptococcus,Streptococcus)96)93,(Lactobacillus,(Lactobacillus,Lactobacillus)99)76)24)27,((((Listeria,Listeria)100,((Bacillus,Bacillus)66,Oceanobacillus)43)11,(Bacillus,Bacillus)100)25,(Staphylococcus,Staphylococcus)100)15)32,(Bacillus,Geobacillus)8)8,Symbiobacterium)6)21)5,Thermoanaerobacter)1)),(Parachlamydia,((Chlamydophila,(Chlamydophila,Chlamydophila)83)85,Chlamydophila)98)100),((Chlorobium,(Porphyromonas,(Bacteroides,Bacteroides)100)100)37,(Bdellovibrio,(Deinococcus,Thermus)100)28)2),(((((Silicibacter,(Zymomonas,Caulobacter)66)30,Gluconobacter)44,((Bradyrhizobium,Rhodopseudomonas)98,(Mesorhizobium,((Bartonella,Bartonella)95,((Brucella,(Brucella,Brucella)53)99,(Agrobacterium,Sinorhizobium)99)56)58)59)37)96,(Coxiella,(Pirellula,Pirellula)100)24)3,(Geobacter,Desulfovibrio)28)1),Dehalococcoides)1,((Rickettsia,(Rickettsia,Rickettsia)98)100,((Anaplasma,Ehrlichia)100,(Wolbachia,Wolbachia)100)50)27)4,Aquifex)5,((Leptospira,((Borrelia,Borrelia)100,(Treponema,Treponema)86)98)38,((Wolinella,(Helicobacter,Helicobacter)47)58,Campylobacter)100)17)19,(Francizella,(((((Shewanella,Idiomarina)33,((Legionella,((Blochmannia,((Buchnera,Buchnera)44,(((Vibrio,((Vibrio,Vibrio)51,Vibrio)99)86,((Haemophilus,Pasteurella)52,Mannheimia)69)19,((Salmonella,(Escherichia,Shigella)49)82,((Photorhabdus,Erwinia)47,(Yersinia,Yersinia)51)74)62)33)16)10,Wigglesworthia)53)23,Methylococcus)5)17,((Pseudomonas,Pseudomonas)67,Pseudomonas)100)7,Acinetobacter)6,(((((Ralstonia,(Burcholderia,Burcholderia)100)47,(Bordetella,(Bordetella,Bordetella)52)100)53,(Azoarcus,(Chromobacterium,Neisseria)41)32)88,Nitrosomonas)46,((Xanthomonas,Xylella)83,(Xanthomonas,Xanthomonas)100)91)31)33)73)100,(Halobacterium,Haroarcula)93)51,((Aeropyrum,(Pyrobaculum,(Sulforobus,Sulforobus)100)51)65,((Nanoarchaeum,Methanobacterium)31,Methanopyrus)19)18)4,(Archhaeoglobus,((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)89)87)97,((Methanosarcina,Methanosarcina)100,((Methanobacterium,Methanobacterium)98,(Picrophilus,(Thermoplasma,Thermoplasma)93)100)51)22)8)8);
(Oceanobacillus,(Idiomarina,((((((((Sinorhizobium,Nocardia)42,Ralstonia)32,Rhodopseudomonas)5,((Caulobacter,Xanthomonas)45,Methylococcus)53)10,Azoarcus)11,(Legionella,Bifidobacterium)35)5,Desulfovibrio)36,(Photorhabdus,(Salmonella,(Escherichia,Shigella)100)100)98)30)30);
((((Chlorobium,Methanobacterium)73,Methanobacterium)69,Bacillus)100,(Thermococcus,(Pyrococcus,Pyrococcus)79)79);
(Bacillus,((Treponema,Treponema)36,(Borrelia,Borrelia)100)100);
(Leptospira,((Geobacter,Coxiella)100,Methylococcus));
(Desulfotalea,((Methanobacterium,Methanobacterium)82,(Methanosarcina,Methanosarcina)100)100);
(Streptomyces,(((((Xanthomonas,Xanthomonas)75,Xanthomonas)100,Legionella)53,Chromobacterium)100,(Brucella,(Brucella,Brucella)100)100)100);
(Burcholderia,((Vibrio,(Xanthomonas,(Xanthomonas,Xanthomonas)94)88)49,(Ralstonia,((Yersinia,Yersinia)100,(Escherichia,Shigella)100)81)33)33);
(Aquifex,(((Bacteroides,Porphyromonas)63,Leptospira)72,Photorhabdus));
((((((Xanthomonas,Xanthomonas)70,Xanthomonas)98,Xylella)100,Pseudomonas)43,Methylococcus)70,(Nitrosomonas,Chromobacterium));
(Fusobacterium,((((Corynebacterium,Corynebacterium)80,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)99)67,Corynebacterium)100,Clostridium));
(((Desulfovibrio,Escherichia)49,Bradyrhizobium)100,(Pirellula,Pirellula));
((Pyrococcus,(Pyrococcus,Pyrococcus)60)100,(Thermotoga,(Thermus,Aeropyrum)98)98);
(Bacteroides,(Salmonella,(Yersinia,Yersinia)100)100);
(Deinococcus,((Pseudomonas,Pseudomonas)50,Burcholderia));
(Pyrobaculum,(((Methanobacterium,((Nanoarchaeum,(Methanobacterium,Methanobacterium)100)39,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)82)97)100)39)34,((Archhaeoglobus,(((Halobacterium,Haroarcula)100,(Methanosarcina,Methanosarcina)100)54,(Picrophilus,(Thermoplasma,Thermoplasma)100)100)79)81,Methanopyrus)29)99,(Aeropyrum,(Sulforobus,Sulforobus)100)90)90);
(Gloeobacter,(Parachlamydia,((((Caulobacter,(Silicibacter,(Rhodopseudomonas,Bradyrhizobium)100)64)83,((Bartonella,Bartonella)100,(((Agrobacterium,Sinorhizobium)98,(Brucella,(Brucella,Brucella)40)100)36,Mesorhizobium)75)92)50,Zymomonas)100,(Pirellula,Pirellula)100)76)76);
(Treponema,(((Staphylococcus,Staphylococcus)98,(Lactobacillus,Streptococcus)99)99,Streptococcus));
(Clostridium,(Oceanobacillus,(Geobacillus,Bacillus)65)65);
(Haroarcula,(Zymomonas,(Leptospira,((((((Nitrosomonas,(Gloeobacter,(Thermosynechococcus,(Nostos,Synechosystis)66)72)54)42,(((((Vibrio,Vibrio)87,(Vibrio,Vibrio)52)99,((Pasteurella,Mannheimia)100,(((Erwinia,(Salmonella,(Escherichia,Shigella)100)100)98,(Yersinia,Yersinia)100)72,Photorhabdus)100)100)95,(Prochlorococcus,Synechococcus)93)28,Azoarcus)18)85,(Lactobacillus,(Staphylococcus,Staphylococcus)100)97)54,Thermus)17,Geobacillus)50,(Nocardia,(Propionibacterium,(Bifidobacterium,(Corynebacterium,Corynebacterium)100)52)44)100)32)94)94);
((Thermoanaerobacter,Thermotoga)90,((((Pyrococcus,(Thermococcus,Pyrococcus)81)99,Pyrococcus)32,Archhaeoglobus)64,(Nanoarchaeum,(Methanobacterium,(Methanosarcina,Methanosarcina)94)100)87)87);
(Methanosarcina,(Bacteroides,(Bacillus,(Desulfotalea,(Ureaplasma,Xanthomonas)93)68)62)62);
(((((Geobacter,Thermotoga)59,Desulfotalea)52,(Methanobacterium,Thermoanaerobacter)85)70,Clostridium)100,(Methanosarcina,Methanobacterium));
(Methanosarcina,(Fusobacterium,((Bacteroides,Bacteroides)53,((Clostridium,Clostridium)29,(Lactococcus,((Oceanobacillus,Bacillus)97,(Vibrio,(Listeria,Listeria)100)65)100)43)66)72)72);
((Borrelia,Borrelia)100,((Legionella,Francizella)61,(((((((((Brucella,Brucella)95,Brucella)100,(Bartonella,Bartonella)100)62,(Agrobacterium,Sinorhizobium)100)56,Mesorhizobium)100,(Rhodopseudomonas,Bradyrhizobium)100)71,Silicibacter)86,(Pseudomonas,Pseudomonas)100)53,(Pirellula,Pirellula)100)97)97);
((Mesorhizobium,(Xanthomonas,Agrobacterium)87)100,(Mycobacterium,Mycobacterium));
((Sinorhizobium,Idiomarina)100,(Pirellula,Pirellula));
(Thermococcus,(Treponema,(Bacillus,(Silicibacter,(Vibrio,(Vibrio,Vibrio)63)100)69)85)85);
(Clostridium,(Streptomyces,(Sinorhizobium,(Desulfotalea,(Idiomarina,(((Vibrio,(Vibrio,Vibrio)97)92,Vibrio)100,(Escherichia,Shigella)100)50)71)62)64)64);
(Thermotoga,(Tropheryma,((Bifidobacterium,Leifsonia)87,((Propionibacterium,(Streptomyces,Streptomyces)99)52,((Mycobacterium,(Mycobacterium,Mycobacterium)100)84,(Nocardia,(Corynebacterium,(Corynebacterium,Corynebacterium)43)100)92)84)75)49)49);
(Methanosarcina,((Methanosarcina,Bacillus)46,(Bordetella,Bordetella)100)100);
((Clostridium,Clostridium)62,(((Oceanobacillus,((Lactococcus,(Streptococcus,(((Streptococcus,Streptococcus)30,Streptococcus)70,Streptococcus)51)73)76,Enterococcus)54)17,((Listeria,Listeria)100,(((Staphylococcus,Staphylococcus)99,(Bacillus,((Bacillus,Bacillus)96,(Geobacillus,(Bacillus,Bacillus)100)56)41)53)24,Lactobacillus)15)22)23,((Neisseria,Geobacter)37,(Clostridium,(Parachlamydia,(Chlamydophila,(Chlamydophila,Chlamydophila)49)100)98)60)48)48);
((Geobacter,Thermoanaerobacter)100,(Methanobacterium,Methanosarcina));
(Geobacter,(Bradyrhizobium,((Salmonella,(Sinorhizobium,Pseudomonas)36)59,(Bordetella,(Bordetella,Bordetella)70)100)97)97);
((((Mesorhizobium,Silicibacter)94,Caulobacter)89,(Xanthomonas,(Xanthomonas,Xanthomonas)78)100)100,(Bacteroides,Bacteroides));
(Burcholderia,(Rickettsia,(Rickettsia,Rickettsia)94)94);
((Vibrio,Vibrio)100,(Pirellula,Pirellula));
(Sinorhizobium,(((Pseudomonas,Mesorhizobium)70,Silicibacter)93,Photorhabdus));
(Pyrobaculum,(Nanoarchaeum,(Methanopyrus,(((((Methanobacterium,((Methanosarcina,Methanosarcina)100,Methanobacterium)44)38,Methanobacterium)24,Archhaeoglobus)33,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)76)99)97)32,((Picrophilus,(Thermoplasma,Thermoplasma)95)64,(Sulforobus,Sulforobus)100)100)41)97)97);
(Clostridium,((((Propionibacterium,((Streptomyces,Streptomyces)100,((Nocardia,(Mycobacterium,Mycobacterium)100)100,(Corynebacterium,(Corynebacterium,Corynebacterium)100)100)100)57)93,Leifsonia)42,Bifidobacterium)100,(Porphyromonas,(Bacteroides,Bacteroides)100)100)100);
(Lactococcus,(Acinetobacter,(Sinorhizobium,Pseudomonas)72)72);
(((Sinorhizobium,Acinetobacter)54,Agrobacterium)40,(Streptomyces,(Corynebacterium,(Corynebacterium,Corynebacterium)99)100)100);
(Leptospira,((Haroarcula,Halobacterium)100,Methanobacterium));
(Chromobacterium,((Vibrio,Vibrio)40,Vibrio));
(Clostridium,(Vibrio,(Zymomonas,Bacillus)51)51);
(Geobacter,((Synechosystis,Nostos)56,Thermosynechococcus));
(Ralstonia,((Mesorhizobium,Sinorhizobium)72,Bradyrhizobium));
(Aquifex,((Azoarcus,Chromobacterium)39,Wolinella));
(Geobacter,(Streptomyces,(Propionibacterium,Bifidobacterium)88)88);
(Pyrobaculum,(Aeropyrum,(Nanoarchaeum,((Thermococcus,((Pyrococcus,Pyrococcus)61,Pyrococcus)48)99,(Methanopyrus,((Archhaeoglobus,((Haroarcula,Halobacterium)100,(Methanosarcina,Methanosarcina)100)91)56,((Methanobacterium,(Methanobacterium,Methanobacterium)66)30,(Picrophilus,(Thermoplasma,Thermoplasma)100)100)59)15)17)31)83)83);
(Thermotoga,((((((((Listeria,Listeria)100,(Bacillus,((Bacillus,Bacillus)100,(Bacillus,Bacillus)96)99)73)73,Oceanobacillus)62,(Staphylococcus,Staphylococcus)100)84,(Lactobacillus,Lactobacillus)100)92,(Lactococcus,((Streptococcus,((Streptococcus,Streptococcus)67,Streptococcus)45)70,Streptococcus)100)100)89,((Clostridium,(Clostridium,Clostridium)45)100,Symbiobacterium)57)66,((Phytoplasma,Fusobacterium)60,(Mycoplasma,((Mycoplasma,(Mycoplasma,Mycoplasma)89)47,((Ureaplasma,Mycoplasma)57,(Mycoplasma,Mycoplasma)100)39)82)86)72)72);
(Sinorhizobium,((Erwinia,Vibrio)50,Vibrio));
((Chlamydophila,Chlamydophila)100,(Pirellula,Pirellula));
(Clostridium,(((Bacteroides,Lactococcus)86,Corynebacterium)100,Porphyromonas));
(Chromobacterium,(((Salmonella,Erwinia)45,Photorhabdus)69,(Methylococcus,Mannheimia)70)70);
(Ralstonia,((Salmonella,Pasteurella)40,Xanthomonas));
(Synechococcus,(Chromobacterium,(Desulfotalea,(((((Vibrio,(Vibrio,Vibrio)97)100,Vibrio)23,Shewanella)53,(Idiomarina,Erwinia)77)42,(Pseudomonas,Pseudomonas)100)53)87)87);
((Bradyrhizobium,Streptomyces)78,(Aeropyrum,(Pyrococcus,Pyrococcus)100)100);
(Clostridium,((Nostos,(Deinococcus,(Streptomyces,Streptomyces)100)28)59,(Lactobacillus,(Pirellula,Pirellula)100)87)87);
(((Chromobacterium,(Salmonella,(Shigella,Escherichia)100)100)45,(Photorhabdus,Streptomyces)37)100,(Corynebacterium,Corynebacterium));
((Azoarcus,(Shewanella,(Idiomarina,(Vibrio,((Vibrio,Vibrio)54,Vibrio)45)97)74)64)61,(Silicibacter,((Rhodopseudomonas,Bradyrhizobium)99,((Sinorhizobium,Agrobacterium)98,(Mesorhizobium,(Brucella,Brucella)100)70)49)71)71);
(Caulobacter,(Nocardia,(Mycobacterium,Mycobacterium)100)100);
(Geobacter,((Burcholderia,Burcholderia)99,Photorhabdus));
(((((((Vibrio,Idiomarina)60,(Erwinia,(Vibrio,(Vibrio,Vibrio)88)100)47)19,Desulfotalea)92,(Pseudomonas,Pseudomonas)100)47,(Xanthomonas,(Xanthomonas,Xanthomonas)79)100)87,((Silicibacter,Chromobacterium)94,(Rhodopseudomonas,(Mesorhizobium,(Caulobacter,Agrobacterium)53)42)92)43)100,(Mycobacterium,Mycobacterium));
(Listeria,(((Xanthomonas,Xanthomonas)93,Xanthomonas)100,Bacteroides));
(((Bordetella,Bordetella)100,Nocardia)100,(Pirellula,Pirellula));
(((Yersinia,Yersinia)100,Vibrio)100,(Burcholderia,Burcholderia));
(((Bordetella,Bordetella)84,Bordetella)100,(Xanthomonas,(Xanthomonas,Xanthomonas)54)54);
(((((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)66)98)93,(((Idiomarina,Bdellovibrio)57,Pseudomonas)59,(Acinetobacter,(Pseudomonas,Pseudomonas)67)22)26)95,Silicibacter)100,(Nitrosomonas,Neisseria)100)99,((Methanopyrus,((Haroarcula,Archhaeoglobus)81,(Methanobacterium,Methanobacterium)94)64)93,(Pyrococcus,(Pyrococcus,Pyrococcus)98)100)100);
(((Propionibacterium,Bacillus)92,Streptomyces)100,(Clostridium,Clostridium));
(Leptospira,(Acinetobacter,(((Silicibacter,Deinococcus)90,(Pseudomonas,(Pseudomonas,Pseudomonas)98)100)54,(Burcholderia,Burcholderia)100)51)51);
(Gloeobacter,(Corynebacterium,(Corynebacterium,(Mycobacterium,Mycobacterium)100)60)60);
((Rhodopseudomonas,Bradyrhizobium)99,((Erwinia,(Yersinia,Yersinia)100)82,(Pseudomonas,((Gluconobacter,Caulobacter)60,(Xanthomonas,(Xanthomonas,Xanthomonas)100)100)91)89)89);
(Thermotoga,((((Streptococcus,Lactococcus)85,(Clostridium,(((Mannheimia,((Photorhabdus,Salmonella)100,(Vibrio,Vibrio)100)84)95,((Yersinia,Yersinia)100,(Erwinia,(Escherichia,Shigella)100)86)100)97,(Bacteroides,Bacteroides)100)84)84)31,(Bacillus,(((Bacillus,(Bacillus,Oceanobacillus)34)76,Clostridium)72,Thermoanaerobacter)100)31)100,(((Leifsonia,Propionibacterium)95,(Corynebacterium,Corynebacterium)100)60,((Caulobacter,(Xanthomonas,(Xanthomonas,Xanthomonas)100)100)100,((Sinorhizobium,Mesorhizobium)100,(Brucella,Brucella)100)50)100)100)100);
(Pyrococcus,(Chlamydophila,((Prochlorococcus,Nostos)93,(((((Methylococcus,Aquifex)27,(Campylobacter,(Helicobacter,(Wolinella,Helicobacter)68)96)99)25,Chlorobium)19,(Leptospira,(Photorhabdus,(Blochmannia,(Buchnera,Buchnera)92)96)92)21)4,(Thermotoga,(Streptococcus,((Porphyromonas,(Bacteroides,Bacteroides)100)98,(((Tropheryma,Propionibacterium)66,(Nocardia,Corynebacterium)86)37,(Bdellovibrio,((((Anaplasma,Ehrlichia)98,(Wolbachia,Wolbachia)100)97,((Zymomonas,(((Mesorhizobium,(Agrobacterium,(Brucella,(Brucella,Brucella)62)100)34)66,(Bartonella,Bartonella)99)53,(Rhodopseudomonas,Bradyrhizobium)100)53)45,Silicibacter)96)98,(Pirellula,Pirellula)100)33)13)53)53)4)6)12)32)32);
(Wolinella,(Porphyromonas,(Bacteroides,Bacteroides)100)100);
(Streptococcus,(Porphyromonas,(Bacteroides,Bacteroides)99)99);
((Burcholderia,Burcholderia)100,(Rhodopseudomonas,Mesorhizobium));
((Synechococcus,Prochlorococcus)100,(((((((Vibrio,Vibrio)72,Vibrio)71,Vibrio)100,Shewanella)97,Idiomarina)91,Silicibacter)43,(Nostos,(Thermosynechococcus,(Ralstonia,Pseudomonas)100)42)53)53);
(Streptococcus,(((Bordetella,Bordetella)61,Bordetella)100,(Ralstonia,(Borrelia,Borrelia)100)100)100);
(Symbiobacterium,((Thermus,Thermoanaerobacter)95,((Treponema,(Enterococcus,(Lactococcus,(Streptococcus,((Streptococcus,Streptococcus)74,(Streptococcus,Streptococcus)39)49)74)93)98)100,(((Geobacillus,(Bacillus,Bacillus)100)12,((Oceanobacillus,(Bacillus,Bacillus)99)40,Bacillus)20)13,(Staphylococcus,Staphylococcus)100)57)42)42);
(Pyrobaculum,(((((((Halobacterium,Haroarcula)100,(Methanosarcina,Methanosarcina)100)34,Methanobacterium)24,Archhaeoglobus)38,(Methanobacterium,Methanobacterium)98)44,((Pyrococcus,Pyrococcus)96,(Pyrococcus,Thermococcus)55)97)44,((Aeropyrum,(Sulforobus,Sulforobus)100)51,(Picrophilus,(Thermoplasma,Thermoplasma)79)100)77)77);
(Treponema,((((Yersinia,Yersinia)100,(Ralstonia,(Burcholderia,Burcholderia)100)100)99,Mesorhizobium)100,Corynebacterium));
((Sinorhizobium,Agrobacterium)100,(Idiomarina,Erwinia));
((Nitrosomonas,Ralstonia)100,(Xanthomonas,Xanthomonas));
(((Mesorhizobium,Bradyrhizobium)46,Sinorhizobium)54,(Ralstonia,(Chromobacterium,(Burcholderia,Burcholderia)100)82)82);
(Clostridium,(Geobacillus,(Bacillus,(Bacillus,Bacillus)93)48)48);
((((Burcholderia,Burcholderia)73,Pseudomonas)100,Francizella)77,(Silicibacter,Mesorhizobium));
((Geobacter,Desulfotalea)100,(Pirellula,Pirellula));
(Clostridium,((Clostridium,Erwinia)73,(Bacillus,Bacillus)100)100);
(Corynebacterium,(Desulfotalea,(Bdellovibrio,Legionella)100)100);
(Desulfovibrio,(Nitrosomonas,((((Vibrio,((Vibrio,Vibrio)45,Vibrio)56)100,(((Pasteurella,(Haemophilus,Mannheimia)99)98,(Photorhabdus,(((Salmonella,(Escherichia,Shigella)99)100,Erwinia)45,(Yersinia,Yersinia)97)64)97)79,(Francizella,Shewanella)30)19)25,(Idiomarina,((Pseudomonas,(Pseudomonas,Pseudomonas)85)100,(Acinetobacter,Legionella)11)3)5)11,((Methylococcus,(Xylella,((Xanthomonas,Xanthomonas)63,Xanthomonas)92)100)29,(((Bordetella,Bordetella)93,Bordetella)100,(((Chromobacterium,Neisseria)61,Azoarcus)22,(Ralstonia,(Burcholderia,Burcholderia)100)90)12)16)14)45)45);
((Listeria,(Lactobacillus,Lactobacillus)89)75,(Bacteroides,(Nostos,Synechosystis)100)100);
(Nostos,((Bordetella,Bordetella)99,(Nitrosomonas,(Rhodopseudomonas,(Sinorhizobium,Mesorhizobium)100)69)76)76);
((Agrobacterium,Sinorhizobium)100,(Pseudomonas,(Bordetella,Bordetella)100)100);
((Haroarcula,(Sulforobus,(Picrophilus,(Thermoplasma,Thermoplasma)100)100)100)94,(((Nostos,Synechosystis)86,Thermosynechococcus)100,(Sinorhizobium,(Synechococcus,Prochlorococcus)100)100)100);
(Desulfotalea,(((Azoarcus,Xanthomonas)99,Bradyrhizobium)100,(Vibrio,Pseudomonas)97)97);
(Leptospira,(((Escherichia,Shigella)100,Salmonella)100,Xanthomonas));
(Clostridium,(Streptococcus,((Staphylococcus,Staphylococcus)98,(Lactobacillus,(Lactobacillus,Lactobacillus)100)56)47)47);
(Gloeobacter,(Bradyrhizobium,(Streptomyces,Streptomyces)100)100);
(Fusobacterium,((((((Streptococcus,Lactococcus)94,Desulfotalea)41,(Enterococcus,((Staphylococcus,Staphylococcus)100,(Bacillus,Oceanobacillus)85)100)61)65,(Listeria,Listeria)100)97,(Clostridium,Clostridium)95)50,(Porphyromonas,(Bacteroides,Bacteroides)100)100)100);
(Nitrosomonas,(Xanthomonas,(Xanthomonas,Xanthomonas)74)74);
(Bacteroides,(Vibrio,((Vibrio,Vibrio)68,((((Mesorhizobium,Bradyrhizobium)93,Pseudomonas)39,(Caulobacter,Sinorhizobium)71)71,(Pirellula,Pirellula)100)50)76)76);
((((((((Bacillus,Bacillus)94,((Bacillus,Bacillus)100,Geobacillus)46)42,Bacillus)60,Oceanobacillus)62,(Staphylococcus,Staphylococcus)100)86,(Listeria,Listeria)100)67,Lactobacillus)100,((Streptomyces,Thermus)49,(Bordetella,(Bordetella,Bordetella)68)100)100);
(Fusobacterium,((((Bradyrhizobium,Sinorhizobium)28,(Agrobacterium,(Mesorhizobium,(Brucella,Brucella)100)100)40)85,(Bacillus,Bordetella)54)54,(Corynebacterium,(Mycobacterium,Mycobacterium)100)98)98);
((((((Bacillus,Bacillus)100,(Bacillus,Bacillus)100)33,Geobacillus)66,Bacillus)72,Oceanobacillus)100,(Symbiobacterium,(Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)35)100)98)98);
(((((Erwinia,(Salmonella,(Escherichia,Shigella)100)100)56,Yersinia)72,Wigglesworthia)37,Photorhabdus)97,((Burcholderia,Burcholderia)100,((Nitrosomonas,Ralstonia)50,(Bordetella,(Bordetella,Bordetella)74)100)34)34);
((Caulobacter,Mesorhizobium)82,(Pseudomonas,(Silicibacter,(Rhodopseudomonas,(Idiomarina,((Shewanella,Vibrio)100,(Vibrio,(Vibrio,Vibrio)80)99)60)100)43)62)62);
(Bacillus,(((Chlamydophila,Chlamydophila)99,Chlamydophila)100,Parachlamydia));
(((((((((((Xanthomonas,(Xanthomonas,Xanthomonas)98)100,(Legionella,(Acinetobacter,(Vibrio,((Vibrio,Vibrio)52,Vibrio)61)96)39)28)7,Azoarcus)4,Pseudomonas)7,((Escherichia,Shigella)100,Pseudomonas)40)3,Pseudomonas)6,Shewanella)53,(Neisseria,Mannheimia)55)100,Caulobacter)35,((Brucella,(Brucella,Brucella)63)100,Silicibacter)27)61,(Deinococcus,((Corynebacterium,(Corynebacterium,Corynebacterium)100)100,(Mycobacterium,Mycobacterium)100)51)51);
(Agrobacterium,(((Yersinia,Yersinia)100,Mannheimia)100,Erwinia));
((Bacteroides,Bacteroides)100,(Chlamydophila,Chlamydophila));
(Corynebacterium,((Bacillus,Bacillus)98,(Bacillus,Bacillus)100)100);
(Pyrobaculum,(((Sulforobus,Sulforobus)100,Picrophilus)100,Haroarcula));
(Thermoanaerobacter,((((((((Streptococcus,Streptococcus)57,Streptococcus)39,(Lactococcus,Streptococcus)54)61,Streptococcus)98,(Lactobacillus,(Lactobacillus,Lactobacillus)98)67)100,Desulfotalea)27,Gloeobacter)42,(Mycoplasma,Mycoplasma)100)100);
(((Photorhabdus,Erwinia)66,Salmonella)100,(Chromobacterium,(Bordetella,Mannheimia)93)93);
(Mesorhizobium,((Pseudomonas,(Pseudomonas,Pseudomonas)96)91,(Methylococcus,(Burcholderia,Burcholderia)100)78)78);
(((Pseudomonas,Pseudomonas)58,Pseudomonas)100,(Bradyrhizobium,Rhodopseudomonas));
(Pyrobaculum,((Sulforobus,Sulforobus)100,(Aeropyrum,(Nanoarchaeum,((((((Haroarcula,Halobacterium)100,(Archhaeoglobus,(Methanosarcina,Methanosarcina)100)54)24,(Methanopyrus,Methanobacterium)65)53,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)93)99)100)43,(Methanobacterium,Methanobacterium)100)72,(Picrophilus,(Thermoplasma,Thermoplasma)100)100)81)94)82)82);
((Nostos,(Synechococcus,Thermosynechococcus)80)63,(Methylococcus,(Synechosystis,(Nitrosomonas,((Xanthomonas,Xanthomonas)98,(Burcholderia,Burcholderia)100)80)40)58)58);
((Methanobacterium,(Halobacterium,Haroarcula)100)47,((Silicibacter,(Mesorhizobium,(Sinorhizobium,(Agrobacterium,((Brucella,Brucella)86,Brucella)100)51)92)100)84,((((Bacillus,Bacillus)99,(Bacillus,Bacillus)99)93,Geobacillus)100,(Sulforobus,((Picrophilus,Thermoplasma)93,(Thermoanaerobacter,Thermotoga)100)60)45)29)29);
((((Bordetella,Bordetella)81,Bordetella)100,Caulobacter)95,(Archhaeoglobus,(Haroarcula,(Aeropyrum,(Methanopyrus,Picrophilus)100)100)77)77);
(Legionella,(Caulobacter,((Rhodopseudomonas,Bradyrhizobium)92,((Agrobacterium,Sinorhizobium)89,(Mesorhizobium,(Brucella,(Brucella,Brucella)79)100)54)47)94)94);
((Bartonella,Bartonella)100,((Photorhabdus,(Yersinia,Yersinia)100)69,((Salmonella,(Shigella,Escherichia)100)100,(Erwinia,((Vibrio,(Vibrio,(Vibrio,Vibrio)55)39)100,(Methylococcus,((Shewanella,Idiomarina)46,(Pseudomonas,Pseudomonas)100)38)95)92)86)92)92);
(Fusobacterium,(Thermoanaerobacter,(((Staphylococcus,Staphylococcus)100,((Bacillus,Geobacillus)26,(Oceanobacillus,((Bacillus,Bacillus)100,(Bacillus,Bacillus)100)31)30)89)87,((((((((((((Erwinia,(Salmonella,(Escherichia,Shigella)99)100)43,(Yersinia,Yersinia)100)60,Photorhabdus)100,Idiomarina)84,(Vibrio,(Vibrio,(Vibrio,Vibrio)94)98)98)37,(Haemophilus,(Mannheimia,Pasteurella)37)96)71,(Porphyromonas,(Bacteroides,Bacteroides)100)100)99,Wigglesworthia)90,Campylobacter)30,Leptospira)38,Francizella)100,(((Deinococcus,(Silicibacter,((Bradyrhizobium,Rhodopseudomonas)100,((Sinorhizobium,Agrobacterium)98,(Mesorhizobium,(Brucella,Brucella)100)74)100)87)100)80,Thermus)61,(Coxiella,(Shewanella,(Pseudomonas,Pseudomonas)100)86)100)34)75)91)91);
(Fusobacterium,(Thermoanaerobacter,(Lactobacillus,(Clostridium,(Listeria,(Bacillus,Bacillus)100)79)58)56)56);
(Fusobacterium,((((((((Brucella,Brucella)93,Brucella)100,(Burcholderia,Burcholderia)100)57,(Bordetella,(Bordetella,Bordetella)76)99)27,Chromobacterium)31,Azoarcus)99,((Campylobacter,Wolinella)93,(Pasteurella,(Erwinia,(Yersinia,Yersinia)100)99)93)78)92,(Bifidobacterium,(Treponema,Treponema)100)95)95);
(Symbiobacterium,(((Deinococcus,Thermus)85,Oceanobacillus)100,Bradyrhizobium));
((((Photorhabdus,Pseudomonas)100,Xylella)79,(Xanthomonas,(Xanthomonas,Xanthomonas)100)100)100,(Corynebacterium,Corynebacterium));
(Thermotoga,(Clostridium,(Clostridium,Clostridium)39)39);
(Desulfotalea,(Azoarcus,(Bradyrhizobium,(Vibrio,Methylococcus)79)37)37);
(Leptospira,((Bradyrhizobium,Silicibacter)59,Idiomarina));
(Pyrococcus,((Shigella,Escherichia)100,Bradyrhizobium));
(((Xanthomonas,Xanthomonas)100,Xanthomonas)100,(Burcholderia,Burcholderia));
(Methanosarcina,(Desulfotalea,(((Bacillus,Methanosarcina)64,Lactococcus)23,((((Lactobacillus,(((Bacteroides,Bacteroides)100,Clostridium)44,Clostridium)38)21,(Bacillus,Bacillus)82)10,Oceanobacillus)15,(Enterococcus,(Listeria,Listeria)100)37)18)100)100);
(Fusobacterium,(((((Agrobacterium,Sinorhizobium)82,(Silicibacter,((Bordetella,Bordetella)97,Bordetella)100)49)41,(Mesorhizobium,(Brucella,(Brucella,Brucella)67)100)79)62,Zymomonas)100,Clostridium));
(Rhodopseudomonas,((Neisseria,Francizella)39,((Coxiella,Legionella)94,(Bordetella,Bordetella)100)66)66);
((Methanobacterium,((Methanopyrus,((Archhaeoglobus,(Methanosarcina,Methanosarcina)100)28,(Halobacterium,Haroarcula)100)33)20,(Methanobacterium,Methanobacterium)83)26)25,((((((((Aquifex,(Thermus,Deinococcus)95)34,Thermotoga)48,((Desulfovibrio,(Bifidobacterium,(((((Corynebacterium,(Corynebacterium,Corynebacterium)83)93,Nocardia)76,(Mycobacterium,(Mycobacterium,Mycobacterium)100)99)78,(Leifsonia,Tropheryma)39)17,((Streptomyces,Streptomyces)100,Propionibacterium)15)35)96)20,((Geobacter,Desulfotalea)43,((((((Synechosystis,(Prochlorococcus,Synechococcus)100)88,(Nostos,Thermosynechococcus)69)49,Gloeobacter)100,((((Dehalococcoides,Symbiobacterium)21,(Clostridium,(Clostridium,Clostridium)58)94)49,Thermoanaerobacter)24,(((((((Bacillus,Bacillus)100,Geobacillus)52,(Bacillus,Bacillus)95)51,(Listeria,Listeria)100)32,((Staphylococcus,Staphylococcus)99,(Bacillus,Oceanobacillus)45)23)55,(((((Lactobacillus,(Lactobacillus,Lactobacillus)100)82,Lactococcus)43,(Streptococcus,((Streptococcus,Streptococcus)85,Streptococcus)89)99)31,Enterococcus)70,(Phytoplasma,(Mycoplasma,((((Mycoplasma,(Mycoplasma,Mycoplasma)100)90,Mycoplasma)67,Ureaplasma)100,(Mycoplasma,(Mycoplasma,Mycoplasma)77)71)81)58)69)31)96,Fusobacterium)23)7)23,(Bdellovibrio,(Campylobacter,(Wolinella,(Helicobacter,Helicobacter)28)100)100)38)10,Chlorobium)4)3))4,((Porphyromonas,(Bacteroides,Bacteroides)100)100,(Pirellula,Pirellula)100)33)2,((((Anaplasma,Ehrlichia)95,(Wolbachia,Wolbachia)100)100,((Rickettsia,(Rickettsia,Rickettsia)100)100,((Zymomonas,(Gluconobacter,(Caulobacter,Silicibacter)36)14)28,((((Mesorhizobium,(Brucella,(Brucella,Brucella)77)100)56,(Agrobacterium,Sinorhizobium)100)48,(Bartonella,Bartonella)100)90,(Bradyrhizobium,Rhodopseudomonas)100)45)96)94)86,((((Coxiella,Francizella)43,Acinetobacter)24,(((((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)54)92)100,(Shewanella,((((Pasteurella,(Mannheimia,Haemophilus)83)100,(Blochmannia,((Wigglesworthia,Buchnera)75,Buchnera)63)81)64,(((Erwinia,(Salmonella,(Escherichia,Shigella)96)55)97,(Yersinia,Yersinia)100)90,Photorhabdus)84)81,(Idiomarina,((Vibrio,Vibrio)72,(Vibrio,Vibrio)51)87)70)35)69)16,Methylococcus)6,(Pseudomonas,(Pseudomonas,Pseudomonas)92)97)14,((Nitrosomonas,((Chromobacterium,Neisseria)48,(((Bordetella,Bordetella)49,Bordetella)100,(Azoarcus,(Ralstonia,(Burcholderia,Burcholderia)100)89)49)24)97)90,Legionella)17)10)93,(Parachlamydia,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)38)67)100)100)13)13)1,((Leptospira,(Borrelia,Borrelia)100)33,(Treponema,Treponema)100)70)100,(Nanoarchaeum,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)75)88)100)43)9,(((Pyrobaculum,(Sulforobus,Sulforobus)100)46,Aeropyrum)65,(Picrophilus,(Thermoplasma,Thermoplasma)98)100)44)44);
(((Agrobacterium,(Pseudomonas,Pseudomonas)61)74,Pseudomonas)81,(Propionibacterium,Corynebacterium));
(((((((((((((Photorhabdus,(Salmonella,(Escherichia,Shigella)100)100)48,(Yersinia,Yersinia)100)54,Erwinia)99,(Blochmannia,Wigglesworthia)75)43,(Mannheimia,(Pasteurella,Haemophilus)51)100)28,(Vibrio,(Vibrio,(Vibrio,Vibrio)97)92)99)80,Shewanella)52,Idiomarina)99,(Pseudomonas,(Pseudomonas,Pseudomonas)88)100)49,Acinetobacter)49,Legionella)93,Methylococcus)28,((Nitrosomonas,(Chromobacterium,Neisseria)30)14,((((Bordetella,Bordetella)63,Bordetella)100,(Xanthomonas,(Xanthomonas,Xanthomonas)55)100)35,(Burcholderia,Burcholderia)100)21)21);
(Pyrobaculum,((Aeropyrum,(Sulforobus,Sulforobus)100)88,(Methanopyrus,(((Picrophilus,(Thermoplasma,Thermoplasma)97)100,Nanoarchaeum)54,(((Methanobacterium,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)99)100)70)48,(Methanobacterium,Methanobacterium)68)24,(Archhaeoglobus,((Methanosarcina,Methanosarcina)100,(Haroarcula,Halobacterium)100)66)30)5)10)60)60);
(Chlorobium,(Neisseria,(Bifidobacterium,Desulfovibrio)93)93);
(Clostridium,((Bacillus,Bacillus)100,(Bacillus,Bacillus)100)100);
(Streptomyces,((Nocardia,Deinococcus)96,Streptomyces));
(Bacteroides,((Mannheimia,Haemophilus)65,Neisseria));
((((Pseudomonas,Pseudomonas)100,(Nitrosomonas,Ralstonia)61)94,((Bordetella,Bordetella)100,(Acinetobacter,(Chromobacterium,Burcholderia)49)63)92)100,(Pirellula,Pirellula));
((Corynebacterium,Streptomyces)99,(Chromobacterium,(Ralstonia,(Vibrio,Shewanella)100)90)90);
(Nocardia,(Acinetobacter,(Silicibacter,((Rhodopseudomonas,Bradyrhizobium)46,(Sinorhizobium,Mesorhizobium)100)45)97)97);
((((Pseudomonas,Pseudomonas)45,(Pseudomonas,((Bordetella,Bordetella)61,Bordetella)100)52)72,Coxiella)100,(Listeria,Listeria));
(((((Mannheimia,Pasteurella)82,Haemophilus)95,Vibrio)53,(Vibrio,Francizella)75)83,(Sulforobus,Sulforobus));
((((((((((((Corynebacterium,(Corynebacterium,Corynebacterium)100)100,Nocardia)31,(Caulobacter,Propionibacterium)37)40,(Mycobacterium,Mycobacterium)100)58,(Streptomyces,Streptomyces)100)92,Bifidobacterium)65,(Rhodopseudomonas,(Pseudomonas,Pseudomonas)100)55)87,Shewanella)77,(Vibrio,(Photorhabdus,(Yersinia,(Salmonella,(Escherichia,Shigella)89)100)74)62)47)80,Blochmannia)100,((Francizella,((Thermosynechococcus,Gloeobacter)34,(Bartonella,((Mesorhizobium,(Agrobacterium,Sinorhizobium)70)51,(Brucella,(Brucella,Brucella)76)100)100)37)27)53,(Synechococcus,Prochlorococcus)85)100)100,(Mycoplasma,Mycoplasma));
(Symbiobacterium,((Leptospira,Desulfotalea)97,(((((((Staphylococcus,Staphylococcus)99,Bacillus)21,Oceanobacillus)37,Bacillus)70,(Listeria,Listeria)100)66,(Lactobacillus,Enterococcus)100)100,(Bacillus,Bacillus)100)53)53);
(((Xanthomonas,Xanthomonas)96,Xanthomonas)100,(Azoarcus,(Burcholderia,Burcholderia)100)100);
(Ralstonia,((Pseudomonas,Pseudomonas)32,Pseudomonas));
((Fusobacterium,Thermotoga)100,((((((((Bacillus,(Bacillus,Bacillus)100)72,(Bacillus,Bacillus)100)64,Geobacillus)55,((Listeria,Listeria)100,((Lactobacillus,(Lactococcus,(Streptococcus,(Streptococcus,(Streptococcus,(Streptococcus,Streptococcus)52)25)67)100)98)28,Enterococcus)46)22)38,Oceanobacillus)40,(Lactobacillus,Lactobacillus)100)85,(Staphylococcus,Staphylococcus)100)99,(Mycoplasma,(Ureaplasma,(Mycoplasma,Mycoplasma)97)98)98)98);
(Nostos,(Sinorhizobium,((Burcholderia,Burcholderia)100,(Bradyrhizobium,(Bordetella,Bordetella)100)77)85)85);
(Streptomyces,(Agrobacterium,((Chromobacterium,(Pseudomonas,Pseudomonas)77)56,(((Vibrio,Vibrio)100,(Bordetella,Bordetella)100)72,(Burcholderia,Burcholderia)100)49)97)97);
(Salmonella,(Bordetella,(Bordetella,Bordetella)62)62);
(Archhaeoglobus,((Desulfotalea,Desulfovibrio)95,(Gloeobacter,Nostos)100)100);
(Ralstonia,(Sinorhizobium,(Mesorhizobium,Bradyrhizobium)52)52);
(Archhaeoglobus,((((((Salmonella,(Vibrio,Vibrio)100)57,(Bordetella,Bordetella)100)87,Azoarcus)78,Wolinella)100,(Dehalococcoides,Symbiobacterium)100)100,(Pyrobaculum,Aeropyrum)98)98);
(((Mesorhizobium,Sinorhizobium)89,(Streptomyces,Ralstonia)44)100,(Bacteroides,Bacteroides));
((Synechosystis,Thermosynechococcus)100,(Vibrio,Bdellovibrio));
(Bacillus,(Mesorhizobium,(Bradyrhizobium,Rhodopseudomonas)64)64);
(Bacillus,(((Escherichia,Bacillus)69,Nocardia)94,Leifsonia));
(Thermoanaerobacter,((Symbiobacterium,(Oceanobacillus,((Listeria,Listeria)100,(((Geobacillus,(Bacillus,Bacillus)100)36,Bacillus)32,Bacillus)37)73)100)55,((((((Leifsonia,Propionibacterium)38,(Tropheryma,Bifidobacterium)34)13,(Streptomyces,Streptomyces)100)60,((Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)99)99,(Corynebacterium,(Corynebacterium,Corynebacterium)99)100)80)98,(Dehalococcoides,((Thermosynechococcus,Nostos)60,Gloeobacter)100)28)43,(Geobacter,(Pirellula,Pirellula)100)16)45)45);
(Ralstonia,((Mesorhizobium,Rhodopseudomonas)52,Silicibacter));
(Methanosarcina,(((((Mycobacterium,Mycobacterium)100,Mycobacterium)100,Nocardia)100,(Corynebacterium,(Corynebacterium,Corynebacterium)93)100)78,(Streptomyces,Streptomyces)100)100);
(Thermotoga,(Silicibacter,(Rhodopseudomonas,Bradyrhizobium)100)100);
(Bdellovibrio,(Nitrosomonas,(((((Vibrio,Vibrio)68,Vibrio)89,Vibrio)100,Chromobacterium)63,(Escherichia,(Burcholderia,Burcholderia)100)85)86)86);
(((Xanthomonas,Xanthomonas)81,(Xanthomonas,Xylella)57)100,(Listeria,Listeria));
(((Bradyrhizobium,Streptomyces)64,Pseudomonas)63,(Nostos,Gloeobacter));
((Fusobacterium,Thermotoga)28,(((Deinococcus,Thermus)100,((Synechococcus,Prochlorococcus)100,((Synechosystis,Nostos)92,(Gloeobacter,Thermosynechococcus)55)94)100)41,(((((((((((Streptococcus,(Streptococcus,Streptococcus)43)62,Streptococcus)99,Streptococcus)99,Lactococcus)100,Enterococcus)67,Lactobacillus)69,(Lactobacillus,Lactobacillus)100)76,((Staphylococcus,Staphylococcus)100,((Bacillus,Bacillus)100,(Bacillus,Geobacillus)53)86)81)53,(Clostridium,Clostridium)100)86,Symbiobacterium)98,(Campylobacter,(Chlorobium,(Parachlamydia,(Treponema,(Borrelia,Borrelia)100)100)40)29)17)6)6);
(Synechosystis,(((((Brucella,Brucella)100,Brucella)100,(Agrobacterium,Sinorhizobium)89)74,Mesorhizobium)65,Desulfovibrio));
(Thermotoga,(Bacillus,((Nocardia,(Streptomyces,Streptomyces)67)100,(Mannheimia,(Agrobacterium,(Mesorhizobium,Sinorhizobium)65)100)75)46)46);
((((((((((((Escherichia,Shigella)100,Salmonella)81,Nitrosomonas)100,Erwinia)70,Yersinia)77,Wigglesworthia)94,(Pseudomonas,Pseudomonas)100)51,Pseudomonas)89,Ralstonia)100,Methylococcus)96,((((Rhodopseudomonas,Bradyrhizobium)100,(Gluconobacter,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)100)96)100)89)96,((Vibrio,Shewanella)100,Silicibacter)48)69,(Zymomonas,Caulobacter)100)98)100,(Pirellula,Pirellula));
(Clostridium,((Lactobacillus,Nocardia)99,Streptococcus));
(Bacillus,((Streptomyces,Streptomyces)100,Leifsonia));
(Gluconobacter,((Pseudomonas,Photorhabdus)100,(Bordetella,Bordetella)100)100);
(Symbiobacterium,((Bacillus,Bacillus)100,(Pirellula,Pirellula)100)100);
(Sulforobus,((Aeropyrum,Lactobacillus)58,Pyrobaculum));
(Symbiobacterium,(Bacteroides,(Nocardia,(Streptomyces,Streptomyces)100)91)91);
(Leptospira,((Caulobacter,(Mycobacterium,Mycobacterium)100)94,(Geobacter,Bradyrhizobium)100)100);
((Halobacterium,Haroarcula)100,((Helicobacter,Desulfotalea)67,(((Methanobacterium,(((Pasteurella,(Mannheimia,Haemophilus)94)100,((((((Yersinia,Yersinia)100,(Salmonella,(Escherichia,Shigella)100)99)57,Erwinia)44,Photorhabdus)100,Shewanella)50,(Francizella,(Vibrio,(Vibrio,(Vibrio,Vibrio)89)37)82)27)56)81,(Idiomarina,(Corynebacterium,(Corynebacterium,Corynebacterium)99)100)49)99)94,Coxiella)26,(((Chlorobium,((Legionella,((Acinetobacter,((Chromobacterium,Methylococcus)46,(Azoarcus,((Bordetella,Bordetella)72,Bordetella)100)65)40)69,(Xylella,(Xanthomonas,Xanthomonas)100)100)52)91,(Gluconobacter,(Pseudomonas,(Rhodopseudomonas,Bradyrhizobium)100)87)98)52)10,((((Leifsonia,Bifidobacterium)50,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)99)100)86,(Streptomyces,Streptomyces)100)98,(Deinococcus,Thermus)86)52)5,((((Wolinella,Lactobacillus)48,(Bacillus,(Geobacillus,(Bacillus,Bacillus)100)74)99)18,((Bacteroides,((Staphylococcus,Staphylococcus)100,(Bacillus,((Streptococcus,(Streptococcus,Streptococcus)70)100,(Listeria,Listeria)99)100)96)78)23,Desulfovibrio)29)11,((Synechosystis,Synechococcus)89,(Pirellula,Pirellula)100)37)2)2)19)19);
((Streptomyces,Streptomyces)100,(Rhodopseudomonas,(Chromobacterium,(Agrobacterium,Silicibacter)95)100)100);
(Thermococcus,(Pyrobaculum,(Leptospira,(Geobacter,(Ralstonia,((Silicibacter,(Pirellula,Pirellula)100)70,(Treponema,(Bacillus,Bacillus)100)87)54)86)86)100)100);
(((((Nostos,Gloeobacter)47,Thermosynechococcus)60,Synechosystis)88,(Prochlorococcus,Synechococcus)94)100,(Corynebacterium,(Pirellula,Pirellula)100)100);
(((Xanthomonas,Xanthomonas)96,Xanthomonas)100,(Mesorhizobium,Brucella));
(Aquifex,(((Thermotoga,(((Thermus,Deinococcus)71,((Phytoplasma,(Mycoplasma,(Mycoplasma,Mycoplasma)58)96)72,(((Pirellula,Pirellula)100,Silicibacter)40,(Porphyromonas,(Bacteroides,Bacteroides)100)99)46)47)16,(Fusobacterium,(Treponema,Treponema)99)34)6),(Symbiobacterium,((((Streptomyces,Streptomyces)100,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)95)72)39,((Leifsonia,Tropheryma)89,(Propionibacterium,Bifidobacterium)34)24)40,(Corynebacterium,(Corynebacterium,Corynebacterium)49)96)77)21),(((((Azoarcus,(Chromobacterium,Neisseria)83)64,(Ralstonia,(Burcholderia,Burcholderia)100)35)46,((((Leptospira,((Wolbachia,Wolbachia)100,(Anaplasma,Ehrlichia)100)90)8,(((Rickettsia,(Rickettsia,Rickettsia)98)100,(Bdellovibrio,((Sinorhizobium,Agrobacterium)96,((Caulobacter,Gluconobacter)44,((Mesorhizobium,((Bartonella,Bartonella)97,(Brucella,(Brucella,Brucella)56)100)64)26,(Zymomonas,(Rhodopseudomonas,Bradyrhizobium)97)28)21)15)41)25)15,((Parachlamydia,((Chlamydophila,Chlamydophila)81,(Chlamydophila,Chlamydophila)76)100)66,((Gloeobacter,Nostos)61,(Thermosynechococcus,((Prochlorococcus,Synechococcus)100,Synechosystis)11)15)46)8))1,((Helicobacter,Helicobacter)57,(Wolinella,Campylobacter)21)47),(Dehalococcoides,((Bordetella,(Bordetella,Bordetella)43)100,((Pseudomonas,(Pseudomonas,Pseudomonas)92)88,((((((((Erwinia,(Photorhabdus,(((Buchnera,Buchnera)41,(Wigglesworthia,Blochmannia)55)78,(Yersinia,Yersinia)100)18)15)15,(Salmonella,(Escherichia,Shigella)92)74)24,(Mannheimia,(Haemophilus,Pasteurella)15)26)19,Idiomarina)25,Francizella)6,(Acinetobacter,((((Vibrio,Vibrio)87,Vibrio)80,Vibrio)54,Shewanella)75)26)13,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)85)89)94)4,(Legionella,(Coxiella,Methylococcus)32)46)9)4)3))),(Chlorobium,((Geobacter,Desulfovibrio)56,Nitrosomonas)29)6),(Thermoanaerobacter,((Desulfotalea,(Borrelia,Borrelia)100)16,((Clostridium,Clostridium)73,(((Oceanobacillus,(Staphylococcus,Staphylococcus)99)36,(Bacillus,((((Listeria,Listeria)98,(Bacillus,Bacillus)88)23,Geobacillus)8,(Bacillus,Bacillus)99)30)5)3,((Enterococcus,((Lactococcus,((Streptococcus,Streptococcus)39,(Streptococcus,(Streptococcus,Streptococcus)49)47)39)68,((Lactobacillus,Lactobacillus)52,Lactobacillus)74)61)5,(Mycoplasma,((Ureaplasma,Mycoplasma)22,(Mycoplasma,(Mycoplasma,Mycoplasma)100)54)20)72)3)4)12)))));
(Desulfovibrio,(((Helicobacter,Wolinella)92,(Coxiella,Salmonella)100)47,(Xanthomonas,(Xanthomonas,Xanthomonas)82)100)100);
((Symbiobacterium,Thermoanaerobacter)55,((Pirellula,Pirellula)100,(((Staphylococcus,Staphylococcus)100,((Listeria,Listeria)100,((((Bacillus,Oceanobacillus)34,(Bacillus,Bacillus)100)28,Geobacillus)52,(Bacillus,Bacillus)100)95)64)58,((Clostridium,Clostridium)73,(Clostridium,((Desulfotalea,Treponema)67,(Parachlamydia,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)90)72)100)99)58)80)68)35)35);
(Symbiobacterium,(((Bordetella,Bordetella)66,Bordetella)100,Ralstonia));
(Thermotoga,((Clostridium,Clostridium)49,(Chromobacterium,(Bacillus,Bacillus)100)89)89);
(Thermoanaerobacter,(((Thermosynechococcus,Nostos)70,Synechosystis)98,(Bdellovibrio,(Methylococcus,Nitrosomonas)100)44)44);
(((((((Vibrio,Vibrio)55,Vibrio)69,Vibrio)93,(Haemophilus,(Pasteurella,Mannheimia)74)94)99,Shewanella)100,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)97)98)77)100,(Bordetella,(Bordetella,Bordetella)71)71);
(Bacillus,(Porphyromonas,(Bacteroides,Bacteroides)60)60);
(Pyrococcus,(Streptococcus,((((Vibrio,Vibrio)100,(Vibrio,Vibrio)74)64,((Pseudomonas,Shewanella)33,((Photorhabdus,(Erwinia,((Salmonella,(Escherichia,Shigella)100)100,(Yersinia,Yersinia)100)74)96)100,Idiomarina)22)6)93,(Bacillus,(((Bacillus,Bacillus)99,(Bacillus,Bacillus)100)73,(Geobacillus,(Listeria,Listeria)100)33)48)99)90)90);
(Leptospira,(Vibrio,(Vibrio,(Vibrio,Vibrio)61)53)53);
((Thermosynechococcus,Nostos)100,(Desulfovibrio,(Bacteroides,Bacteroides)100)100);
((((Shigella,Escherichia)100,Erwinia)100,Mannheimia)100,(Sinorhizobium,Mesorhizobium));
(Pyrobaculum,((((((((Methanobacterium,Methanobacterium)99,Picrophilus)48,(Methanosarcina,Methanosarcina)100)23,Methanobacterium)44,Methanopyrus)97,Archhaeoglobus)95,Aeropyrum)72,(Sulforobus,Sulforobus)95)95);
(Sulforobus,(((((((Bacillus,Bacillus)100,Oceanobacillus)42,(Bacillus,Geobacillus)57)62,(Bacillus,Bacillus)100)72,(Staphylococcus,Staphylococcus)100)62,(Listeria,Listeria)100)64,(Lactobacillus,Enterococcus)100)100);
(Leptospira,(((Vibrio,Vibrio)98,Chromobacterium)33,(Acinetobacter,((((((((Ralstonia,(Pseudomonas,(Burcholderia,Burcholderia)100)62)26,Pseudomonas)37,Pseudomonas)60,Idiomarina)86,Shewanella)69,(Coxiella,Legionella)39)33,Bradyrhizobium)95,(Xanthomonas,(Xanthomonas,Xanthomonas)86)100)51)25)25);
(Photorhabdus,(Bordetella,(Bordetella,Bordetella)61)61);
(Neisseria,((Salmonella,Escherichia)100,Vibrio));
(Pyrobaculum,(((Pyrococcus,((Thermococcus,Pyrococcus)54,Pyrococcus)59)96,(((Methanopyrus,(Methanobacterium,(Methanobacterium,Methanobacterium)52)83)40,(Nanoarchaeum,(Archhaeoglobus,(Haroarcula,(Methanosarcina,Methanosarcina)98)83)97)57)12,(Picrophilus,(Thermoplasma,Thermoplasma)85)96)17)100,(Sulforobus,Sulforobus)83)83);
(Geobacter,(((Pseudomonas,Pseudomonas)78,Pseudomonas)87,(Bdellovibrio,(Vibrio,Vibrio)96)90)90);
(Thermotoga,(Thermoanaerobacter,(((Phytoplasma,(Mycoplasma,((Ureaplasma,(Mycoplasma,(Mycoplasma,Mycoplasma)100)78)67,Mycoplasma)100)78)50,(Mycoplasma,Mycoplasma)97)75,((Clostridium,(Clostridium,Clostridium)44)100,((((Bacillus,((Geobacillus,(Bacillus,Bacillus)96)58,(Oceanobacillus,(Bacillus,Bacillus)100)36)52)84,(Staphylococcus,Staphylococcus)100)52,(((Lactobacillus,(Lactobacillus,Lactobacillus)100)56,(Enterococcus,(Lactococcus,(Streptococcus,(Streptococcus,(Streptococcus,(Streptococcus,Streptococcus)84)38)84)97)100)35)80,(Listeria,Listeria)100)72)98,(Symbiobacterium,((Dehalococcoides,(Deinococcus,Thermus)100)15,((Streptomyces,Streptomyces)100,(Nocardia,((Corynebacterium,(Corynebacterium,Corynebacterium)100)100,(Mycobacterium,Mycobacterium)100)59)75)100)38)43)17)15)33)33);
(Pyrobaculum,(Aeropyrum,(Methanopyrus,(Methanobacterium,((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)94)100)98,(((Archhaeoglobus,(Methanosarcina,Methanosarcina)100)46,Haroarcula)48,(Methanobacterium,(Picrophilus,(Thermoplasma,Thermoplasma)100)100)36)20)35)72)87)87);
(Mesorhizobium,((Silicibacter,Pseudomonas)76,(Burcholderia,Burcholderia)100)100);
(Ralstonia,(Silicibacter,(Brucella,Brucella)100)100);
(Treponema,(Pseudomonas,(((Photorhabdus,(Yersinia,Yersinia)100)55,(Mannheimia,Pasteurella)95)89,((Acinetobacter,((Escherichia,Shigella)100,Shewanella)40)34,(Bordetella,(Bordetella,Bordetella)89)100)40)56)56);
(Chlorobium,(Vibrio,((((((Erwinia,(Salmonella,(Shigella,Escherichia)100)100)79,(Yersinia,Yersinia)100)59,Photorhabdus)100,(Pasteurella,Mannheimia)99)50,(Neisseria,Bdellovibrio)39)26,((Deinococcus,Shewanella)49,(Parachlamydia,(Vibrio,(Vibrio,Vibrio)77)100)43)3)96)96);
(Thermotoga,(Bdellovibrio,(Silicibacter,Streptomyces)98)98);
((Vibrio,Shewanella)100,(Bordetella,Bordetella));
(((Xanthomonas,Xanthomonas)100,Xanthomonas)100,(Pirellula,Pirellula));
(Agrobacterium,(((Photorhabdus,(Xanthomonas,Bartonella)92)100,Pseudomonas)39,((Shigella,Erwinia)85,(Neisseria,Nitrosomonas)97)86)86);
(Burcholderia,((Bradyrhizobium,Rhodopseudomonas)31,Mesorhizobium));
(Yersinia,(Gluconobacter,(Zymomonas,(Caulobacter,(Silicibacter,((Bradyrhizobium,Rhodopseudomonas)100,(((Sinorhizobium,Agrobacterium)95,(Brucella,(Brucella,Brucella)92)100)31,(Mesorhizobium,(Bartonella,Bartonella)100)26)61)85)48)59)64)64);
((((Chlamydophila,Chlamydophila)91,Chlamydophila)100,Parachlamydia)100,(Agrobacterium,Gluconobacter));
(Thermoanaerobacter,(Enterococcus,(Treponema,(((Clostridium,(Streptococcus,Streptococcus)100)24,Lactobacillus)46,((Bacillus,Bacillus)100,(Vibrio,((Caulobacter,(Streptomyces,Propionibacterium)98)57,(Campylobacter,((Photorhabdus,(Yersinia,Yersinia)100)100,(Chromobacterium,(Ralstonia,(Burcholderia,Burcholderia)100)99)53)90)36)28)41)100)33)55)55);
((Bacillus,Bacillus)100,((Staphylococcus,((Desulfovibrio,Bacillus)69,Bacillus)35)23,(Shewanella,Idiomarina)100)100);
((Chromobacterium,(Azoarcus,Coxiella)23)49,(Francizella,Idiomarina));
(Methanobacterium,(Fusobacterium,(((Clostridium,Clostridium)81,(Enterococcus,(((Streptococcus,Lactococcus)48,Streptococcus)25,Streptococcus)69)28)48,(Vibrio,Vibrio)100)38)38);
(((Pyrococcus,Wolbachia)55,(Streptococcus,Picrophilus)77)100,(Sulforobus,(Thermoplasma,Thermoplasma)96)96);
(Desulfotalea,((((((((((Salmonella,(Escherichia,Shigella)100)100,Erwinia)77,Photorhabdus)84,(Yersinia,Yersinia)100)100,(Haemophilus,(Mannheimia,Pasteurella)75)100)89,(Vibrio,(Vibrio,(Vibrio,Vibrio)37)99)100)65,(Shewanella,Idiomarina)43)48,((Legionella,Coxiella)40,Methylococcus)81)73,(Pseudomonas,(Pseudomonas,Pseudomonas)74)100)99,(Agrobacterium,(Mesorhizobium,(Brucella,(Brucella,Brucella)80)100)84)100)100);
(((((((((((((Ralstonia,(Burcholderia,Burcholderia)100)89,(Bradyrhizobium,Acinetobacter)29)51,Chromobacterium)98,(Bartonella,Mesorhizobium)84)91,(Agrobacterium,(Erwinia,(Salmonella,(Escherichia,Shigella)98)100)99)80)38,Vibrio)52,Gluconobacter)74,(Corynebacterium,(Nocardia,(Streptomyces,(Mycobacterium,Mycobacterium)100)64)97)100)100,Neisseria)71,(Vibrio,Vibrio)100)58,(Bordetella,(Bordetella,Bordetella)77)100)62,Pseudomonas)100,(Listeria,Listeria));
(Leptospira,((Bifidobacterium,Propionibacterium)100,Desulfovibrio));
(Streptococcus,((Rhodopseudomonas,Desulfovibrio)51,(Pirellula,Pirellula)100)100);
(Streptococcus,(Parachlamydia,(((Zymomonas,(Caulobacter,(Xanthomonas,(Xanthomonas,Xanthomonas)99)100)91)99,(Deinococcus,(Nocardia,(Corynebacterium,(Corynebacterium,Corynebacterium)84)99)76)36)24,(Yersinia,Yersinia)100)66)66);
(((((((Yersinia,Yersinia)100,Erwinia)74,(Salmonella,(Shigella,Escherichia)100)99)90,(((Vibrio,(Vibrio,Vibrio)41)28,Vibrio)100,Shewanella)48)78,Idiomarina)52,Pseudomonas)100,(Chromobacterium,(Azoarcus,Burcholderia)54)54);
(Thermoanaerobacter,(Sulforobus,(Thermoplasma,Picrophilus)95)95);
(Nocardia,(Xanthomonas,(Xanthomonas,Xanthomonas)76)76);
(Treponema,((Methanosarcina,Methanosarcina)100,Archhaeoglobus));
(Thermotoga,((Synechococcus,Prochlorococcus)100,(Synechosystis,Nostos)100)100);
((Methanosarcina,Methanosarcina)100,((Thermus,Thermoanaerobacter)69,(Dehalococcoides,Methanobacterium)100)100);
(Mesorhizobium,(Vibrio,((((Yersinia,Yersinia)100,Photorhabdus)54,Pseudomonas)96,((Bordetella,(Bordetella,Bordetella)95)100,(Xanthomonas,Xanthomonas)100)39)25)25);
(Fusobacterium,(Clostridium,(Thermoanaerobacter,(Symbiobacterium,((Dehalococcoides,(Desulfotalea,Geobacter)64)18,(((Synechococcus,Thermosynechococcus)49,(Nostos,Gloeobacter)58)83,((((Oceanobacillus,Bacillus)66,(Staphylococcus,Staphylococcus)100)65,(Lactobacillus,(Listeria,Listeria)98)54)37,(((((Caulobacter,(Gluconobacter,(Silicibacter,((Bradyrhizobium,Mesorhizobium)76,(Bartonella,Bartonella)99)80)50)25)29,Zymomonas)84,((((Legionella,Methylococcus)57,(Coxiella,Acinetobacter)16)7,(Neisseria,(((Nitrosomonas,Chromobacterium)40,(Ralstonia,(Burcholderia,Burcholderia)100)71)20,(Pseudomonas,(Pseudomonas,Pseudomonas)67)95)15)17)44,((Bordetella,Bordetella)44,Bordetella)100)72)67,(Leptospira,(Pirellula,Pirellula)100)12)13,(Desulfovibrio,(Bifidobacterium,((Corynebacterium,(Corynebacterium,Corynebacterium)61)97,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)56)70)18)2)1)3)16)35)34)34);
(Acinetobacter,(Anaplasma,(Ehrlichia,(Wolbachia,(Rickettsia,(Rickettsia,Rickettsia)96)100)83)54)54);
(Nostos,(((((Rhodopseudomonas,Sinorhizobium)29,Silicibacter)51,Mesorhizobium)90,Helicobacter)100,(Streptomyces,(Brucella,(Brucella,Brucella)100)100)100)100);
((Ralstonia,Chromobacterium)100,(Agrobacterium,(Brucella,Brucella)100)100);
(Symbiobacterium,((Photorhabdus,(Bacillus,Bacillus)82)98,Shigella));
(Pyrobaculum,(((((Pyrococcus,Pyrococcus)43,Pyrococcus)98,Thermococcus)100,(Methanobacterium,Methanopyrus)59)100,(Sulforobus,Sulforobus)100)100);
(Ralstonia,(Erwinia,(Xanthomonas,Xanthomonas)100)100);
(Ralstonia,(Idiomarina,(Acinetobacter,(((Vibrio,Vibrio)86,Vibrio)100,(Escherichia,Erwinia)100)78)55)55);
((((Idiomarina,Shewanella)53,(Bdellovibrio,Francizella)88)43,(Vibrio,(Vibrio,(Vibrio,Vibrio)53)94)85)100,(Gloeobacter,Nostos));
(((Pseudomonas,((Methylococcus,(Ralstonia,Nitrosomonas)90)43,Legionella)41)98,Buchnera)100,(Archhaeoglobus,(Sulforobus,Sulforobus)87)87);
(((Bacteroides,Bacteroides)100,Porphyromonas)100,(Shewanella,Vibrio));
(Gloeobacter,(Rhodopseudomonas,(Bradyrhizobium,(Mesorhizobium,(Silicibacter,(Idiomarina,Pasteurella)46)52)36)41)41);
((Xanthomonas,Xanthomonas)100,(Sinorhizobium,Gluconobacter));
((Azoarcus,(Nitrosomonas,(Caulobacter,Methylococcus)36)44)67,(Silicibacter,((Bradyrhizobium,Rhodopseudomonas)100,(Mesorhizobium,(Agrobacterium,Sinorhizobium)100)100)97)97);
(((Methanosarcina,Methanosarcina)100,Pyrococcus)100,(Mycobacterium,Mycobacterium));
((Coxiella,Acinetobacter)100,(Rhodopseudomonas,Bradyrhizobium));
(Nostos,((Thermosynechococcus,(Prochlorococcus,Synechococcus)100)45,(Synechosystis,(Dehalococcoides,Gloeobacter)99)66)66);
((Wolinella,Campylobacter)56,(Pasteurella,((Erwinia,(Salmonella,(Escherichia,Shigella)89)100)58,(Yersinia,Yersinia)100)85)85);
(((((((((((Salmonella,(Escherichia,Shigella)95)99,((Yersinia,Yersinia)100,(Erwinia,Photorhabdus)35)42)100,(Idiomarina,Shewanella)73)56,(Haemophilus,(Pasteurella,Mannheimia)51)100)67,(Legionella,Coxiella)36)37,(Pseudomonas,(Pseudomonas,Pseudomonas)82)100)89,Methylococcus)90,((Neisseria,Chromobacterium)98,(Azoarcus,(Ralstonia,((Bordetella,Bordetella)54,Bordetella)100)43)38)89)62,Acinetobacter)35,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)47)54)99)100,(Bradyrhizobium,Mesorhizobium));
(Leptospira,(Geobacter,(Azoarcus,Pseudomonas)100)100);
(Mesorhizobium,((((Xanthomonas,Xanthomonas)77,Xanthomonas)98,Xylella)87,(Nitrosomonas,Methylococcus)99)99);
((Clostridium,Thermoanaerobacter)92,(Bifidobacterium,Enterococcus));
(Pyrobaculum,((((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)68)89)100,(Nanoarchaeum,(Methanobacterium,Methanobacterium)95)44)52,((Methanosarcina,Methanosarcina)100,(Halobacterium,Haroarcula)100)86)4,(((Methanopyrus,(Aeropyrum,(Sulforobus,Sulforobus)100)67)22,Methanobacterium)20,(Archhaeoglobus,(Picrophilus,(Thermoplasma,Thermoplasma)91)100)39)5)5);
(Sinorhizobium,((Pseudomonas,Pseudomonas)88,(Xanthomonas,Xanthomonas)99)99);
(Aquifex,((Thermoanaerobacter,((Clostridium,Clostridium)34,Clostridium)100)12,(Thermotoga,((Bdellovibrio,Geobacter)28,(((Campylobacter,(Wolinella,(Helicobacter,Helicobacter)80)74)99,((Desulfovibrio,Desulfotalea)39,(Chlorobium,(Dehalococcoides,(Fusobacterium,(Pirellula,Pirellula)100)13)8)4)1),((Deinococcus,Thermus)46,((((Symbiobacterium,((Gloeobacter,(Synechosystis,(Nostos,Thermosynechococcus)69)66)36,(Prochlorococcus,Synechococcus)75)96)26,((Leptospira,(Parachlamydia,(Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)74)94)100)100)13,(((((Legionella,(Pseudomonas,(Pseudomonas,Pseudomonas)85)100)31,(((Pasteurella,(Haemophilus,Mannheimia)90)93,((Yersinia,Yersinia)99,(Photorhabdus,(Erwinia,((Escherichia,Shigella)55,Salmonella)99)59)44)62)69,((Idiomarina,Shewanella)63,((Vibrio,(Vibrio,Vibrio)43)30,Vibrio)84)41)9)2,(((Xylella,((Xanthomonas,Xanthomonas)81,Xanthomonas)100)100,Methylococcus)43,(Acinetobacter,(((Bordetella,Bordetella)56,Bordetella)100,((Chromobacterium,Azoarcus)58,(Nitrosomonas,(Neisseria,(Ralstonia,(Burcholderia,Burcholderia)100)88)36)22)41)97)54)1)8,(Francizella,((Buchnera,Buchnera)23,(Blochmannia,Wigglesworthia)51)55)9)31,(((Borrelia,Borrelia)100,(Treponema,Treponema)95)86,Coxiella)40)13))2,(Tropheryma,(((Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)99)48,((Corynebacterium,(Corynebacterium,Corynebacterium)98)100,Propionibacterium)7)13,((Leifsonia,(Streptomyces,Streptomyces)99)40,Bifidobacterium)15)38)12)1,((((Listeria,Listeria)94,(((Lactobacillus,(Lactobacillus,Lactobacillus)98)44,(Lactococcus,(((Streptococcus,(Streptococcus,Streptococcus)22)19,Streptococcus)51,Streptococcus)51)100)72,(Staphylococcus,Staphylococcus)97)14)30,(Mycoplasma,(Geobacillus,((Bacillus,Bacillus)95,((Bacillus,(Bacillus,Bacillus)100)21,Oceanobacillus)27)19)35)12)6,(((((Mycoplasma,(Mycoplasma,Mycoplasma)68)94,(((Rickettsia,(Rickettsia,Rickettsia)87)100,((Anaplasma,Ehrlichia)95,(Wolbachia,Wolbachia)89)100)41,(Silicibacter,(Gluconobacter,((Bradyrhizobium,Rhodopseudomonas)98,((Caulobacter,Zymomonas)49,((Agrobacterium,((Sinorhizobium,(Bartonella,Bartonella)100)29,(Brucella,(Brucella,Brucella)83)100)34)65,Mesorhizobium)75)8)19)26)39)78)12,(Porphyromonas,(Bacteroides,Bacteroides)99)100)21,Phytoplasma)1,(Mycoplasma,((Mycoplasma,Ureaplasma)30,(Mycoplasma,Mycoplasma)100)29)100))2))))1)));
(Archhaeoglobus,(Desulfovibrio,(Chlorobium,Desulfotalea)99)99);
(Desulfovibrio,(Gloeobacter,(Thermosynechococcus,(Nostos,Synechosystis)97)89)89);
(Pyrobaculum,(Aeropyrum,((Sulforobus,Sulforobus)100,((Methanopyrus,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)55)77)100)42,((Archhaeoglobus,((Halobacterium,Haroarcula)100,(Methanosarcina,Methanosarcina)100)50)26,(Methanobacterium,((Methanobacterium,Methanobacterium)100,(Nanoarchaeum,(Picrophilus,(Thermoplasma,Thermoplasma)100)100)75)24)18)16)74)47)47);
((Methanosarcina,Methanosarcina)100,(((((Clostridium,(((Corynebacterium,(Corynebacterium,Corynebacterium)100)100,((Lactococcus,(Streptococcus,(Streptococcus,Streptococcus)82)72)100,(Listeria,Listeria)100)83)30,Lactobacillus)24)11,Clostridium)51,(Bifidobacterium,(Clostridium,(Mannheimia,Neisseria)100)73)21)42,Desulfotalea)82,(Methanobacterium,(Methanobacterium,(Methanopyrus,(Aeropyrum,(Sulforobus,Pyrobaculum)75)100)100)44)81)81);
(Wolinella,((Chromobacterium,Nitrosomonas)44,(Ralstonia,(Burcholderia,Burcholderia)100)91)91);
(Clostridium,(Bacteroides,(Porphyromonas,Bacteroides)38)38);
((Pirellula,Pirellula)100,(Vibrio,Vibrio));
((Fusobacterium,Thermotoga)65,(((Bacillus,(Bacillus,Bacillus)100)59,(Bacillus,Bacillus)100)100,((Clostridium,(Clostridium,Clostridium)83)100,(Symbiobacterium,((Propionibacterium,(Streptomyces,Streptomyces)100)58,((Mycobacterium,Mycobacterium)100,(Corynebacterium,Corynebacterium)100)92)100)68)47)47);
(Streptococcus,((Bacillus,Mesorhizobium)79,Helicobacter));
(Geobacter,((Burcholderia,Burcholderia)100,Nitrosomonas));
(Bacteroides,(Haemophilus,((Pseudomonas,(Helicobacter,Campylobacter)100)75,(Burcholderia,Burcholderia)100)90)90);
(((((Gloeobacter,(Thermosynechococcus,(Synechosystis,Nostos)70)89)85,(Synechococcus,Prochlorococcus)54)100,Geobacter)82,Deinococcus)92,(Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)83)100)100);
(Fusobacterium,(Treponema,(Lactobacillus,((Bacillus,Bacillus)100,(Pseudomonas,((Streptomyces,Streptomyces)81,(Mycobacterium,Mycobacterium)100)100)82)100)93)93);
((Pyrococcus,Pyrococcus)99,(Thermotoga,(Methanobacterium,(Desulfovibrio,(Lactobacillus,Enterococcus)100)79)90)90);
((Bifidobacterium,(Corynebacterium,Corynebacterium)87)90,(Xanthomonas,(Xylella,(Photorhabdus,(Yersinia,Pseudomonas)100)100)62)62);
(Thermotoga,((Thermoanaerobacter,((Clostridium,Clostridium)89,Clostridium)100)89,((Dehalococcoides,((Bacillus,Bacillus)100,(((Oceanobacillus,(Bacillus,(Bacillus,Bacillus)97)42)38,Geobacillus)21,(((Lactobacillus,(Lactobacillus,Lactobacillus)99)60,Enterococcus)50,(Listeria,Listeria)100)35)15)96)17,(Symbiobacterium,((Bdellovibrio,Geobacter)35,(Desulfovibrio,((((((((Acinetobacter,(Bordetella,(Bordetella,Bordetella)84)100)35,(Methylococcus,(Pseudomonas,Legionella)31)6)3,((Nitrosomonas,Azoarcus)32,Coxiella)11)3,((Ralstonia,(Burcholderia,Burcholderia)100)77,Chromobacterium)26)7,((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)49)94)100,Neisseria)36)22,((Shewanella,((Vibrio,Vibrio)59,(Vibrio,Vibrio)35)95)75,Francizella)16)48,(Zymomonas,((Silicibacter,(Mesorhizobium,(((Brucella,Brucella)95,Brucella)100,(Agrobacterium,Sinorhizobium)90)87)63)84,(Rhodopseudomonas,Bradyrhizobium)100)65)97)48,(((Chlorobium,(Porphyromonas,(Bacteroides,Bacteroides)100)100)55,(Campylobacter,Wolinella)97)23,(Leptospira,((Streptomyces,Streptomyces)100,((Corynebacterium,(Corynebacterium,Corynebacterium)96)97,(Nocardia,(Mycobacterium,Mycobacterium)100)97)82)98)24)4)10)10)45)33)14)14);
((Symbiobacterium,((Clostridium,(Thermoanaerobacter,Clostridium)59)57,Clostridium)100)100,((((Bacillus,Bacillus)100,(Geobacillus,(Bacillus,Bacillus)100)64)74,Oceanobacillus)84,((Listeria,Listeria)100,((Staphylococcus,Staphylococcus)100,((Lactobacillus,Enterococcus)41,((Lactococcus,(Streptococcus,(Streptococcus,(Streptococcus,(Streptococcus,Streptococcus)56)66)100)100)100,(Lactobacillus,Lactobacillus)100)37)100)91)56)56);
((Mesorhizobium,Silicibacter)100,(Bacillus,Bacillus));
(Leptospira,((Campylobacter,(Helicobacter,Wolinella)96)100,(((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)100)98)100,((((Gluconobacter,(Silicibacter,(Caulobacter,(((Mesorhizobium,((Brucella,Brucella)79,Brucella)100)86,(Sinorhizobium,Agrobacterium)99)92,(Bradyrhizobium,Rhodopseudomonas)100)100)53)98)96,((((Bordetella,Bordetella)96,Bordetella)100,((Azoarcus,(Ralstonia,(Burcholderia,Burcholderia)100)68)46,Nitrosomonas)24)52,Chromobacterium)100)41,(((Idiomarina,(Shewanella,(Vibrio,(Vibrio,(Vibrio,Vibrio)93)80)100)83)83,(Pseudomonas,(Pseudomonas,Pseudomonas)78)100)34,Acinetobacter)27)5,Methylococcus)18)53,(Desulfotalea,(Pirellula,Pirellula)100)53)68)68);
(Gloeobacter,((Pseudomonas,Thermosynechococcus)74,Chlorobium));
(((((((Streptococcus,Streptococcus)100,Streptococcus)49,Streptococcus)99,(Staphylococcus,Staphylococcus)100)94,Lactobacillus)43,((Bacillus,Bacillus)100,(Bacillus,Bacillus)100)97)100,(Streptomyces,Streptomyces));
(Deinococcus,(Lactobacillus,(((Streptococcus,Lactobacillus)59,Enterococcus)67,(Bacillus,Bacillus)100)83)83);
((Streptococcus,Staphylococcus)100,(Mycobacterium,Mycobacterium));
(Chlorobium,((Methylococcus,Ralstonia)61,(Rhodopseudomonas,Silicibacter)100)100);
(Geobacter,((((Escherichia,Shigella)100,(Salmonella,(Erwinia,(Yersinia,Yersinia)100)83)48)98,Vibrio)99,(Shewanella,(Pseudomonas,Pseudomonas)100)64)64);
(Clostridium,(Enterococcus,((Thermosynechococcus,(Bacteroides,Bacteroides)100)77,(Streptococcus,((((Bradyrhizobium,Rhodopseudomonas)100,((((Corynebacterium,(Corynebacterium,Corynebacterium)90)100,(Mycobacterium,Mycobacterium)100)81,Nocardia)73,(Streptomyces,Streptomyces)99)83)35,(((Vibrio,((Vibrio,(Vibrio,Vibrio)42)51,Desulfovibrio)32)66,Shewanella)53,Synechococcus)86)16,(Caulobacter,(Mannheimia,(Pasteurella,(Erwinia,(Salmonella,(Escherichia,Shigella)97)88)93)69)100)49)72)39)84)84);
(Leptospira,((((Pseudomonas,Pseudomonas)80,Pseudomonas)99,(Ralstonia,Mesorhizobium)61)100,Bdellovibrio));
(Pyrobaculum,(Aeropyrum,(((((Pyrococcus,Thermococcus)87,(Pyrococcus,Pyrococcus)70)100,(Methanobacterium,(Methanobacterium,Methanobacterium)100)91)95,((Methanosarcina,Methanosarcina)100,(Archhaeoglobus,(Haroarcula,Halobacterium)100)74)85)96,(Methanopyrus,(Picrophilus,(Thermoplasma,Thermoplasma)79)100)65)75)75);
(((Xanthomonas,(Xylella,(Xanthomonas,Xanthomonas)68)64)100,(((Bordetella,Bordetella)78,Bordetella)100,(Ralstonia,Burcholderia)98)81)97,(Caulobacter,Silicibacter));
(Pyrobaculum,(Sulforobus,(Aeropyrum,(Methanobacterium,(((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)100)94)100,(Methanobacterium,Methanobacterium)100)56,(((Archhaeoglobus,Methanopyrus)95,(Picrophilus,(Thermoplasma,Thermoplasma)92)100)23,((Halobacterium,Haroarcula)100,(Methanosarcina,Methanosarcina)100)91)32)29)49)83)83);
(Methanobacterium,(Geobacillus,(Streptomyces,Streptomyces)100)100);
((Bacteroides,Bacteroides)100,(Leptospira,(Idiomarina,(Caulobacter,(Xanthomonas,Xanthomonas)100)100)89)89);
((Rhodopseudomonas,Bradyrhizobium)100,((((((Vibrio,Vibrio)41,Vibrio)44,Vibrio)84,Pasteurella)60,Shewanella)100,(Agrobacterium,((Escherichia,Erwinia)87,(Yersinia,Yersinia)100)89)79)79);
(Aeropyrum,(((((Chlamydophila,Chlamydophila)100,Chlamydophila)56,Chlamydophila)80,Parachlamydia)96,Bdellovibrio));
(Symbiobacterium,((((((Erwinia,(Yersinia,Yersinia)100)43,Photorhabdus)86,(Salmonella,(Escherichia,Shigella)100)100)98,(Pasteurella,(Haemophilus,Mannheimia)60)100)57,Acinetobacter)99,(Clostridium,((Geobacillus,((Bacillus,(Bacillus,Bacillus)100)80,(Bacillus,Bacillus)67)78)94,(((Enterococcus,Lactobacillus)65,Lactobacillus)88,(Listeria,Listeria)100)93)100)70)70);
((Corynebacterium,Corynebacterium)100,(Listeria,Listeria));
(Zymomonas,(Xylella,(Xanthomonas,Xanthomonas)65)65);
(Aquifex,(Parachlamydia,((Porphyromonas,Bacteroides)100,((Fusobacterium,Phytoplasma)39,((Propionibacterium,Desulfovibrio)19,(Tropheryma,(Corynebacterium,(Mycobacterium,(Mycobacterium,Mycobacterium)100)83)45)22)39)29)51)51);
((((Methylococcus,Coxiella)85,Ralstonia)93,(Chromobacterium,(Burcholderia,Burcholderia)100)96)100,(Yersinia,Yersinia));
(Fusobacterium,((Helicobacter,Helicobacter)99,((Bacillus,Symbiobacterium)100,(Acinetobacter,(Treponema,Campylobacter)100)100)98)98);
(Clostridium,(Methanopyrus,((Methanobacterium,(Methanobacterium,(Thermococcus,(Pyrococcus,Pyrococcus)67)86)97)44,(Methanobacterium,(Methanosarcina,Methanosarcina)100)60)46)46);
(Ralstonia,(Shewanella,(Idiomarina,(((Neisseria,Pseudomonas)63,Acinetobacter)29,(Methylococcus,((Vibrio,(Vibrio,Vibrio)98)99,(Escherichia,Erwinia)99)84)22)9)18)18);
(Xanthomonas,((((Brucella,Brucella)95,Brucella)100,Sinorhizobium)100,Bradyrhizobium));
(Bacillus,((Streptococcus,Silicibacter)91,Streptomyces));
(Streptomyces,(Burcholderia,(Bradyrhizobium,Acinetobacter)68)68);
((Streptococcus,Streptococcus)86,(((Streptococcus,Mannheimia)100,Mesorhizobium)96,(Pseudomonas,Photorhabdus)90)90);
(Methanobacterium,((Bacillus,Mesorhizobium)44,Nostos));
(((((((Thermus,((Ralstonia,Bradyrhizobium)100,(Burcholderia,Burcholderia)100)59)73,(Mycobacterium,Mycobacterium)100)77,Methanobacterium)24,Gloeobacter)28,Geobacter)24,((Picrophilus,(Thermoplasma,Thermoplasma)89)97,(Thermotoga,((Aeropyrum,Pyrobaculum)91,(Sulforobus,Sulforobus)92)66)19)18)100,(Archhaeoglobus,(Pyrococcus,(Pyrococcus,(Thermococcus,Pyrococcus)67)61)97)97);
((Bacillus,Bacillus)100,(Pirellula,Pirellula));
(Synechosystis,(((Burcholderia,Burcholderia)100,((Bordetella,(Bordetella,Bordetella)93)100,Ralstonia)25)94,((Methylococcus,Nitrosomonas)32,((Azoarcus,(Neisseria,Chromobacterium)70)37,(((Shewanella,(Vibrio,(Vibrio,(Vibrio,Vibrio)61)81)100)100,(Pseudomonas,(Pseudomonas,Pseudomonas)77)100)75,((Acinetobacter,Idiomarina)49,(((Silicibacter,(Sinorhizobium,Agrobacterium)100)100,(Synechococcus,(((Erwinia,(Yersinia,Yersinia)100)93,((Salmonella,(Shigella,Escherichia)97)100,Photorhabdus)60)100,(Buchnera,(Wigglesworthia,Prochlorococcus)27)50)41)93)72,((Legionella,Coxiella)79,(Campylobacter,(Wolinella,(Helicobacter,Helicobacter)91)100)100)51)46)25)64)14)17)17);
(Desulfovibrio,((Bordetella,Chromobacterium)64,(Haemophilus,Neisseria)63)63);
(Pseudomonas,(Ralstonia,(Burcholderia,Burcholderia)100)100);
((((Bordetella,Bordetella)89,Bordetella)100,(Acinetobacter,Salmonella)81)99,(Rhodopseudomonas,Bradyrhizobium));
(Streptomyces,((Burcholderia,Burcholderia)100,(Yersinia,Yersinia)100)100);
((((Chromobacterium,Nitrosomonas)45,((Ralstonia,(Burcholderia,Burcholderia)100)70,(Bordetella,(Bordetella,Bordetella)99)100)95)34,Azoarcus)93,(Methylococcus,((Xylella,((Xanthomonas,Xanthomonas)66,Xanthomonas)95)100,(Pseudomonas,(Pseudomonas,Pseudomonas)47)100)42)42);
(((((Xanthomonas,(Xanthomonas,Xanthomonas)72)95,Xylella)96,((Bordetella,Bordetella)96,Bordetella)100)98,Neisseria)100,(Caulobacter,(Silicibacter,(Mesorhizobium,(Agrobacterium,Sinorhizobium)95)88)72)72);
(Mycobacterium,(Chromobacterium,((((Erwinia,(Photorhabdus,(Yersinia,Yersinia)100)77)85,(Salmonella,(Escherichia,Shigella)100)80)86,(Mannheimia,(Pasteurella,Haemophilus)56)90)77,(Vibrio,(Vibrio,(Vibrio,Vibrio)83)75)100)69)69);
(Fusobacterium,((Clostridium,Clostridium)99,(((((((Bacillus,Bacillus)100,Oceanobacillus)13,((Staphylococcus,Staphylococcus)100,Bacillus)10)5,((((((Lactobacillus,Lactobacillus)100,Lactobacillus)62,(Streptococcus,(Lactococcus,(Streptococcus,((Streptococcus,Streptococcus)63,Streptococcus)88)34)26)96)33,Enterococcus)74,(Listeria,Listeria)100)31,Geobacillus)9)41,(Bacillus,Bacillus)99)90,Thermoanaerobacter)34,(Gloeobacter,(Synechosystis,Nostos)71)100)100)100);
((((((Xanthomonas,Xanthomonas)79,Xanthomonas)83,Xylella)100,(Mesorhizobium,(Shewanella,(Pirellula,Pirellula)100)82)37)91,Leptospira)69,(Chlorobium,(Bacteroides,Bacteroides)100)100);
(Deinococcus,(Ralstonia,(Caulobacter,(Bradyrhizobium,(Pseudomonas,(((Bordetella,Bordetella)90,Bordetella)100,(Burcholderia,Burcholderia)100)44)31)23)29)29);
((Lactococcus,(Deinococcus,Thermotoga)83)95,((Archhaeoglobus,((Halobacterium,Haroarcula)100,(Methanosarcina,Methanosarcina)100)84)37,((Picrophilus,(Thermoplasma,Thermoplasma)100)99,(((Methanobacterium,Methanopyrus)41,(Methanobacterium,(Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)89)62)100)57)41,(Nanoarchaeum,(Pyrobaculum,(Aeropyrum,(Sulforobus,Sulforobus)100)84)84)61)29)17)17);
((((Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)99)77,Corynebacterium)89,(Leifsonia,(Streptomyces,Streptomyces)100)62)100,(Leptospira,(Parachlamydia,(Treponema,Treponema)100)55)55);
(Desulfotalea,(Shewanella,((Vibrio,(Vibrio,(Vibrio,Vibrio)100)96)98,(Geobacter,(((Salmonella,(Escherichia,Shigella)100)98,(Yersinia,Yersinia)100)100,(((Pseudomonas,Pseudomonas)59,Pseudomonas)98,((Chromobacterium,Erwinia)100,(Xanthomonas,(Xanthomonas,Xanthomonas)100)100)58)63)58)67)65)65);
(Legionella,(Chlamydophila,(Chlamydophila,Chlamydophila)73)73);
(Leifsonia,(Burcholderia,(Bdellovibrio,((Campylobacter,Yersinia)74,(Mesorhizobium,Geobacter)84)31)27)27);
((Rhodopseudomonas,Bradyrhizobium)100,(Legionella,Azoarcus));
((((Rhodopseudomonas,Bradyrhizobium)100,Mesorhizobium)100,Bdellovibrio)100,(Pirellula,Pirellula));
(Fusobacterium,(((Clostridium,Clostridium)47,Clostridium)98,(Corynebacterium,Corynebacterium)100)100);
(((((((Methylococcus,(Pseudomonas,(Pseudomonas,Pseudomonas)51)99)61,(((Chromobacterium,(Azoarcus,((((Bordetella,Bordetella)59,Bordetella)100,Ralstonia)66,(Burcholderia,Burcholderia)100)77)88)76,(Sinorhizobium,Mesorhizobium)100)4,Nitrosomonas)6)35,(((Idiomarina,((Vibrio,(Vibrio,(Vibrio,Vibrio)90)87)100,((Photorhabdus,(Erwinia,(Yersinia,Yersinia)100)82)78,(Salmonella,(Escherichia,Shigella)100)72)65)87)59,Neisseria)33,Acinetobacter)22)74,((Oceanobacillus,Geobacillus)57,((Symbiobacterium,Bdellovibrio)80,Thermotoga)68)51)50,(Deinococcus,Thermus)100)52,Aquifex)80,((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)84)96)97,(Picrophilus,(Thermoplasma,Thermoplasma)45)100)100);
(Streptococcus,((Coxiella,(((Mannheimia,Pasteurella)100,((Nitrosomonas,(((Bordetella,(Bordetella,Bordetella)86)100,Ralstonia)65,((Azoarcus,(Yersinia,Yersinia)100)61,(Shigella,Escherichia)100)66)48)44,Acinetobacter)28)11,((((Bradyrhizobium,Rhodopseudomonas)100,(((Brucella,Brucella)76,Brucella)100,(Mesorhizobium,(Agrobacterium,Sinorhizobium)99)52)100)63,(((Pseudomonas,Pseudomonas)100,Caulobacter)34,Silicibacter)20)36,(Shewanella,(Xanthomonas,Xanthomonas)100)100)18)6)20,(Treponema,(Legionella,(Streptomyces,(Nocardia,(Mycobacterium,Mycobacterium)100)100)100)100)26)26);
((((((Burcholderia,Burcholderia)99,Ralstonia)44,Chromobacterium)100,Mesorhizobium)56,(Bordetella,Bordetella)100)100,(Brucella,(Brucella,Brucella)94)94);
((((((Brucella,Brucella)94,Brucella)100,(Rhodopseudomonas,Bradyrhizobium)100)43,Sinorhizobium)73,Silicibacter)71,(Neisseria,((Pseudomonas,Shewanella)87,((Ralstonia,Azoarcus)50,(Burcholderia,Burcholderia)100)99)100)100);
(Fusobacterium,(Desulfovibrio,((Geobacter,Desulfotalea)85,(Pseudomonas,(Pseudomonas,Pseudomonas)56)100)55)55);
(Symbiobacterium,(Bacillus,(Photorhabdus,Shigella)99)99);
((Methanobacterium,Archhaeoglobus)46,(Azoarcus,Legionella));
((((Methanobacterium,(Thermoplasma,Picrophilus)97)24,(Methanobacterium,Methanobacterium)94)22,(((Halobacterium,Haroarcula)100,(Methanosarcina,Methanosarcina)100)24,Archhaeoglobus)15)57,((((((((((((((Escherichia,Shigella)80,Salmonella)97,((Photorhabdus,(Yersinia,Yersinia)100)64,Erwinia)74)68,(Blochmannia,(Wigglesworthia,Buchnera)66)47)10,(Haemophilus,Mannheimia)100)38,(Shewanella,(Vibrio,(Vibrio,(Vibrio,Vibrio)72)86)98)35)26,Idiomarina)63,(Legionella,Methylococcus)19)11,(((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)94)98)100,((Nitrosomonas,Azoarcus)51,(((Bordetella,(Bordetella,Bordetella)100)100,(Ralstonia,(Burcholderia,Burcholderia)100)100)100,(Chromobacterium,Neisseria)100)79)70)58,(Pseudomonas,(Pseudomonas,Pseudomonas)53)99)10)17,Acinetobacter)25,Francizella)41,Coxiella)65,((Anaplasma,(Wolbachia,Wolbachia)100)98,((Rickettsia,(Rickettsia,Rickettsia)100)100,(((Bartonella,(Brucella,(Brucella,Brucella)54)100)100,((Caulobacter,Gluconobacter)27,Zymomonas)25)37,(Bradyrhizobium,Rhodopseudomonas)99)68)97)49)47,((Desulfovibrio,(Desulfotalea,Bdellovibrio)33)70,((Treponema,Treponema)78,(Borrelia,Borrelia)100)71)83)83);
(Bradyrhizobium,(((Coxiella,(Legionella,Neisseria)49)40,Ehrlichia)52,(((Wigglesworthia,(Buchnera,Buchnera)44)58,Blochmannia)36,((Photorhabdus,(Yersinia,Yersinia)100)78,(Idiomarina,(Shewanella,(Vibrio,Vibrio)93)53)75)53)26)26);
(Fusobacterium,((((Streptococcus,Streptococcus)90,Streptococcus)100,(Corynebacterium,(Corynebacterium,Corynebacterium)100)100)100,Clostridium));
((Thermus,Deinococcus)41,(Desulfotalea,Geobacter));
((Aquifex,(Leptospira,Wolinella)35)100,(Halobacterium,Haroarcula));
(Clostridium,(Leifsonia,(Chromobacterium,(((((((((Vibrio,(Vibrio,(Vibrio,Vibrio)78)55)100,(Shewanella,(((Salmonella,(Escherichia,Shigella)100)99,(Erwinia,(Yersinia,Yersinia)100)38)30,(Blochmannia,Photorhabdus)46)39)16)51,(Mannheimia,(Pasteurella,Haemophilus)85)100)65,Legionella)51,((Xanthomonas,Xanthomonas)65,Xanthomonas)100)73,(Silicibacter,(Mesorhizobium,Agrobacterium)75)89)61,(Francizella,Idiomarina)44)55,((Streptococcus,(Streptococcus,(Enterococcus,Lactococcus)38)32)58,(Lactobacillus,Lactobacillus)100)100)25,(Propionibacterium,(Streptomyces,Streptomyces)99)100)62)100)100);
(Gloeobacter,(((Rhodopseudomonas,(Sinorhizobium,(Shigella,Escherichia)99)79)57,Mesorhizobium)57,((Xanthomonas,Xanthomonas)99,(Bordetella,Bordetella)100)100)100);
((((Chlamydophila,(Chlamydophila,(Chlamydophila,Chlamydophila)100)60)100,Parachlamydia)94,((Treponema,Treponema)91,(Borrelia,Borrelia)100)98)100,(Porphyromonas,(Bacteroides,Bacteroides)100)100);
(Symbiobacterium,((((((Bacillus,((Bacillus,Bacillus)100,(Bacillus,Bacillus)100)50)40,Geobacillus)62,Oceanobacillus)59,(Listeria,Listeria)100)31,((Staphylococcus,Staphylococcus)99,((Porphyromonas,Bacteroides)98,(Nostos,(Streptococcus,Streptococcus)97)34)17)20)26,((Lactococcus,(Lactobacillus,Enterococcus)92)76,(Thermus,(Corynebacterium,(Agrobacterium,(Sinorhizobium,(Mesorhizobium,(Brucella,(Brucella,Brucella)95)100)59)63)100)31)36)33)33);
(Thermotoga,((Thermus,Deinococcus)100,(Bacillus,Bacillus)100)100);
((Clostridium,Thermoanaerobacter)81,(Leptospira,((Campylobacter,Pseudomonas)18,(Escherichia,(Acinetobacter,Ralstonia)93)100)54)54);
((Bacillus,Bacillus)100,(Geobacter,Methylococcus));
(Aquifex,(Methylococcus,(((Acinetobacter,Pseudomonas)67,Chromobacterium)48,(Rhodopseudomonas,(Pseudomonas,Pseudomonas)100)53)32)32);
(Symbiobacterium,(((Pseudomonas,Pseudomonas)92,Pseudomonas)100,Geobacillus));
(Thermoanaerobacter,((Porphyromonas,Treponema)85,((Enterococcus,Clostridium)33,(Geobacter,((Wolinella,(Helicobacter,Campylobacter)58)98,(Desulfovibrio,Desulfotalea)100)63)50)58)58);
((Nostos,Gloeobacter)98,(Geobacter,Chlorobium));
(Nocardia,(Pseudomonas,(Bartonella,((Photorhabdus,(Vibrio,Salmonella)98)61,(Yersinia,Yersinia)100)66)45)45);
(Fusobacterium,((((((((Streptococcus,(Streptococcus,((Streptococcus,Streptococcus)44,Streptococcus)41)72)45,Lactococcus)58,(Enterococcus,(Listeria,Listeria)100)40)39,(Lactobacillus,Lactobacillus)100)17,((Francizella,(Parachlamydia,Leptospira)85)71,(Staphylococcus,Staphylococcus)100)34)6,(((Bacillus,Bacillus)100,((Geobacillus,Bacillus)54,(Bacillus,Bacillus)100)63)62,(Oceanobacillus,Nostos)28)25)83,(Clostridium,Clostridium)75)76,(Bacteroides,Bacteroides)100)100);
(((Bacteroides,((Chlorobium,Deinococcus)63,((Bradyrhizobium,Rhodopseudomonas)100,((Propionibacterium,Leifsonia)70,((Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)98)77,(Corynebacterium,Corynebacterium)74)81)91)55)29)41,((Gloeobacter,Thermosynechococcus)37,(Synechococcus,Synechosystis)57)54)96,(Streptococcus,Streptococcus));
(Gloeobacter,(Bradyrhizobium,(Silicibacter,(Ralstonia,((Idiomarina,Streptomyces)23,(Erwinia,(Bordetella,(Bordetella,Bordetella)99)99)83)40)88)74)74);
(Azoarcus,(((((Vibrio,(Vibrio,Vibrio)77)99,Methylococcus)48,Shewanella)59,Idiomarina)100,(Acinetobacter,(Xanthomonas,(Xanthomonas,Xanthomonas)73)100)66)66);
(Erwinia,(((Bordetella,(Bordetella,Bordetella)90)100,Ralstonia)69,(Burcholderia,Burcholderia)100)100);
(((((Agrobacterium,(Brucella,(Brucella,Brucella)99)100)100,(Desulfotalea,(Chromobacterium,(Vibrio,(Vibrio,(Vibrio,Vibrio)45)82)100)64)53)100,Desulfovibrio)100,Idiomarina)65,((Gloeobacter,Nostos)46,(Prochlorococcus,Synechococcus)100)100);
((((Geobacillus,(Bacillus,(Bacillus,Bacillus)100)40)51,(Bacillus,Bacillus)100)89,Oceanobacillus)100,(Thermoanaerobacter,(Clostridium,(Clostridium,Clostridium)74)100)100);
(Geobacter,(((((Photorhabdus,(Yersinia,Yersinia)100)62,Erwinia)90,(Pseudomonas,(Salmonella,(Shigella,Escherichia)100)97)72)79,Wigglesworthia)100,(Chromobacterium,(Ralstonia,(Burcholderia,Burcholderia)100)99)100)100);
(Desulfotalea,(Rickettsia,(Rickettsia,Rickettsia)84)84);
(Pyrobaculum,((Nanoarchaeum,(Methanobacterium,Methanobacterium)71)48,((Thermococcus,(Pyrococcus,(Pyrococcus,Pyrococcus)79)76)100,((((Archhaeoglobus,((Methanosarcina,Methanosarcina)100,(Haroarcula,Halobacterium)100)84)19,(Methanobacterium,(Picrophilus,(Thermoplasma,Thermoplasma)71)100)35)7,Methanopyrus)13,(Aeropyrum,(Sulforobus,Sulforobus)100)81)16)39)39);
(((((((Coxiella,(Acinetobacter,(Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)60)100)100)12)4,(Methylococcus,(Pseudomonas,(Pseudomonas,Pseudomonas)33)97)25)2,(((((Mannheimia,(Haemophilus,Pasteurella)40)98,((Vibrio,(Vibrio,Vibrio)39)30,Vibrio)100)8,((Blochmannia,(Wigglesworthia,(Buchnera,Buchnera)91)55)87,((Photorhabdus,(Yersinia,Yersinia)100)51,(Erwinia,(Salmonella,(Escherichia,Shigella)100)82)80)84)40)25,(Legionella,Idiomarina)26)2,Shewanella)1)16,((Nitrosomonas,((((Bordetella,Bordetella)48,Bordetella)100,(Burcholderia,Burcholderia)100)36,((Neisseria,Chromobacterium)70,Ralstonia)48)16)16,Azoarcus)62)35,Francizella)91,Bdellovibrio)98,((Corynebacterium,(Corynebacterium,Corynebacterium)89)100,((Tropheryma,((Streptomyces,Streptomyces)100,(Propionibacterium,(Bifidobacterium,Leifsonia)89)46)57)58,(Nocardia,(Mycobacterium,(Mycobacterium,Mycobacterium)100)100)98)50)50);
(((Bradyrhizobium,Rhodopseudomonas)100,Legionella)100,(Pirellula,Pirellula));
(((Aeropyrum,Methanobacterium)17,Methanopyrus)17,(Thermus,((Pyrobaculum,(Sulforobus,Sulforobus)100)62,((Symbiobacterium,Bacillus)83,(Haroarcula,Halobacterium)100)59)23)23);
(Methanosarcina,(Nostos,((((Desulfovibrio,(Vibrio,(Corynebacterium,Azoarcus)45)81)55,Porphyromonas)13,Xanthomonas)20,((Lactobacillus,(Listeria,Listeria)100)100,(Pyrococcus,Borrelia)95)22)54)54);
(Synechococcus,(((((((Leifsonia,Nocardia)38,((Corynebacterium,Corynebacterium)100,(Streptomyces,Streptomyces)100)19)24,Methylococcus)18,(Deinococcus,Corynebacterium)48)19,((((Xanthomonas,(Xanthomonas,Xanthomonas)87)100,((Ralstonia,(Burcholderia,Burcholderia)100)86,(Bordetella,(Bordetella,Bordetella)48)100)37)25,Azoarcus)24,Chromobacterium)40)15,((Desulfovibrio,Propionibacterium)48,Desulfotalea)15)10,((((Acinetobacter,(Pasteurella,(Haemophilus,Mannheimia)34)96)38,(Pseudomonas,(Pseudomonas,Pseudomonas)97)100)92,(Bdellovibrio,((Rhodopseudomonas,Legionella)12,Geobacter)14)8)24,(((Shewanella,Idiomarina)30,(Vibrio,(Vibrio,(Vibrio,Vibrio)99)48)95)16,((Escherichia,Shigella)100,(Photorhabdus,(Erwinia,(Yersinia,Yersinia)100)42)71)77)25)20)20);
((Desulfotalea,Bdellovibrio)32,(Buchnera,(((Acinetobacter,Francizella)86,Idiomarina)29,((((Pasteurella,(Haemophilus,Mannheimia)61)100,(((Erwinia,(Yersinia,Yersinia)100)41,(Salmonella,(Escherichia,Shigella)100)100)70,Photorhabdus)92)85,(Shewanella,((Vibrio,(Vibrio,Vibrio)37)21,Vibrio)98)44)83,(((Neisseria,Chromobacterium)73,((Pseudomonas,Pseudomonas)70,Pseudomonas)99)11,(Coxiella,(Legionella,(Rhodopseudomonas,Agrobacterium)99)61)19)13)20)19)19);
((((Listeria,Listeria)100,Chromobacterium)82,(Vibrio,(Yersinia,Yersinia)100)69)96,(Bacillus,(Bacillus,Bacillus)100)100);
((((Gluconobacter,(Silicibacter,(Caulobacter,(((Mesorhizobium,((Brucella,Brucella)69,Brucella)100)95,(Agrobacterium,Sinorhizobium)54)99,(Bradyrhizobium,Rhodopseudomonas)100)99)81)83)97,(((Pseudomonas,(Pseudomonas,Pseudomonas)89)100,(Shewanella,Idiomarina)100)37,(((Xylella,(Xanthomonas,(Xanthomonas,Xanthomonas)86)97)100,Methylococcus)63,(Chromobacterium,(Azoarcus,((Bordetella,(Bordetella,Bordetella)91)100,(Ralstonia,(Burcholderia,Burcholderia)100)98)57)67)61)80)12)99,Leptospira)100,(Gloeobacter,(((Synechosystis,Nostos)88,Thermosynechococcus)90,(Prochlorococcus,Synechococcus)100)78)78);
(Mesorhizobium,((Xanthomonas,Xanthomonas)62,Xanthomonas));
(Streptomyces,(Caulobacter,(Silicibacter,(((Agrobacterium,Sinorhizobium)76,Mesorhizobium)96,(Bradyrhizobium,Rhodopseudomonas)100)78)89)89);