begin molecule types egf(b1) er(b_egf,dim,p1~U~M,p2~U~M) grb2(b1,b2) ins(b1) ir(b_ins,b_ins2,p1~U~M,p2~U~M) irs(b_ir,p1~U~M) shc(b1,p1~U~M) sos(b_grb2,p1~U~M) end molecule types begin seed species egf(b1) 1 er(b_egf,dim,p1~U,p2~U) 1 grb2(b1,b2) 1 ins(b1) 1 ir(b_ins,b_ins2,p1~U,p2~U) 1 irs(b_ir,p1~U) 1 shc(b1,p1~U) 1 sos(b_grb2,p1~U) 1 end seed species begin reaction rules # rules for process "bind1" ir(b_ins,b_ins2) + ins(b1)<-> ir(b_ins!1,b_ins2).ins(b1!1) 0.454545 0.0454545 ir(b_ins,b_ins2!2).ins(b1!2) + ins(b1)<-> ir(b_ins!1,b_ins2!2).ins(b1!1).ins(b1!2) 0.00909091 0.0909091 # rules for process "bind10" ir(p2~M) + irs(b_ir)<-> ir(p2~M!1).irs(b_ir!1) 0.04 0.04 # rules for process "bind12" irs(p1~M) + grb2(b1)<-> irs(p1~M!1).grb2(b1!1) 0.25 0.25 # rules for process "bind13" er(b_egf,dim) + egf(b1)<-> er(b_egf!1,dim).egf(b1!1) 0.0727273 0.727273 er(b_egf,dim!+) + egf(b1)<-> er(b_egf!1,dim!+).egf(b1!1) 0.909090909 0.090909091 # rules for process "bind15" er(p1~M) + shc(b1)<-> er(p1~M!1).shc(b1!1) 0.2 0.8 # rules for process "bind17" er(p2~M,dim) + grb2(b1)<-> er(p2~M!1,dim).grb2(b1!1) 0.06 0.03 # rules for process "bind2" ir(b_ins2,b_ins) + ins(b1)<-> ir(b_ins2!1,b_ins).ins(b1!1) 0.454545 0.0454545 ir(b_ins2,b_ins!2).ins(b1!2) + ins(b1)<-> ir(b_ins2!1,b_ins!2).ins(b1!1).ins(b1!2) 0.00909091 0.0909091 # rules for process "bind5" ir(p1~M) + shc(b1)<-> ir(p1~M!1).shc(b1!1) 0.05 0.05 # rules for process "bind7" shc(p1~M) + grb2(b1)<-> shc(p1~M!1).grb2(b1!1) 0.2 0.1 # rules for process "bind8" grb2(b2) + sos(b_grb2,p1~U)<-> grb2(b2!1).sos(b_grb2!1,p1~U) 0.00333333 0.00666667 grb2(b2) + sos(b_grb2,p1~M)<-> grb2(b2!1).sos(b_grb2!1,p1~M) 9.99001E-4 0.999001 # rules for process "dim18" er(dim,b_egf) + er(dim,b_egf) <-> er(dim!1,b_egf).er(dim!1,b_egf) 1.0 1.0 er(dim,b_egf!2).egf(b1!2) + er(dim,b_egf) <-> er(dim!1,b_egf!2).egf(b1!2).er(dim!1,b_egf) 1.0 1.0 er(dim,b_egf!1).egf(b1!1) + er(dim,b_egf!3).egf(b1!3) <-> er(dim!2,b_egf!1).egf(b1!1).er(dim!2,b_egf!3).egf(b1!3) 1.0 1.0 # rules for process "mod11" irs(p1~U,b_ir) <-> irs(p1~M,b_ir) 9.90099E-5 0.00990099 irs(p1~U,b_ir!1).ir(p2~M!1) <-> irs(p1~M,b_ir!1).ir(p2~M!1) 0.380952 0.0190476 # rules for process "mod14" er(p1~U,dim) <-> er(p1~M,dim) 3.9996E-5 0.39996 er(p1~U,dim!+) <-> er(p1~M,dim!+) 0.909090909 0.090909091 # rules for process "mod16" er(p2~U,dim) <-> er(p2~M,dim) 1.9998E-5 0.19998 er(p2~U,dim!+) <-> er(p2~M,dim!+) 0.28125 0.01875 # rules for process "mod3" ir(p1~U,b_ins,b_ins2) <-> ir(p1~M,b_ins,b_ins2) 9.999E-5 0.9999 ir(p1~U,b_ins,b_ins2!1).ins(b1!1) <-> ir(p1~M,b_ins,b_ins2!1).ins(b1!1) 1.25 0.25 ir(p1~U,b_ins!1,b_ins2).ins(b1!1) <-> ir(p1~M,b_ins!1,b_ins2).ins(b1!1) 1.25 0.25 ir(p1~U,b_ins!1,b_ins2!2).ins(b1!1).ins(b1!2) <-> ir(p1~M,b_ins!1,b_ins2!2).ins(b1!1).ins(b1!2) 1.904761905 0.095238095 # rules for process "mod4" ir(p2~U,b_ins,b_ins2) <-> ir(p2~M,b_ins,b_ins2) 0.001998 1.998 ir(p2~U,b_ins,b_ins2!1).ins(b1!1) <-> ir(p2~M,b_ins,b_ins2!1).ins(b1!1) 0.83333333 0.16666667 ir(p2~U,b_ins!1,b_ins2).ins(b1!1) <-> ir(p2~M,b_ins!1,b_ins2).ins(b1!1) 0.83333333 0.16666667 ir(p2~U,b_ins!1,b_ins2!2).ins(b1!1).ins(b1!2) <-> ir(p2~M,b_ins!1,b_ins2!2).ins(b1!1).ins(b1!2) 0.47619 0.0238095 # rules for process "mod6" shc(p1~U,b1) <-> shc(p1~M,b1) 9.90099E-5 0.00990099 shc(p1~U,b1!1).er(p1~M!1) <-> shc(p1~M,b1!1).er(p1~M!1) 0.285714 0.0142857 shc(p1~U,b1!1).ir(p1~M!1) <-> shc(p1~M,b1!1).ir(p1~M!1) 0.47619 0.0238095 # rules for process "mod9" sos(p1~U,b_grb2) <-> sos(p1~M,b_grb2) 4.995E-5 0.04995 sos(p1~U,b_grb2!1).grb2(b2!1) <-> sos(p1~M,b_grb2!1).grb2(b2!1) 0.363636 0.0363636 end reaction rules generate_network({overwrite=>1}); writeSBML({suffix=>"kinetics"});