Files in this Data Supplement:
Supplemental text; pairwise synteny plots for the three complete Sphingobium species and two Novosphingobium genomes for which some degree of synteny could be detected (Fig. S1); COG category annotations for the predicted proteins encoded on the chromosomes, megaplasmids, and plasmids of the 7 complete sphingomonad genomes analyzed (Fig. S2); COG category annotation for the 248 protein clusters universally conserved in the 26 sphingomonad genomes (Fig. S3); COG category annotations for the protein clusters found to be overrepresented in the three sphingomonad genera for which multiple genomes were analyzed (Sphingomonas, Sphingobium, and Novosphingobium)(Fig. S4); collection information for the termite-associated Sphingomonas isolates (Table S1); genes identified in the sphingomonad genomes that are signatures indicative of sphingolipid biosynthesis (spt), phosphonate metabolism (phn genes), phosphate uptake (pst genes), denitrification (nirK, norB), nitrate assimilation (nas genes), sulfonate metabolism (ssu genes), and the type IV secretion system (vir genes) (Table S2); total number of glycoside hydrolases, polysaccharide lyases, carbohydrate esterases, monooxygenases, and dioxygenases in the 26 sphingomonad genomes (Table S3).
PDF, 700K
Raw data of the protein clusters identified in the 26 genomes analyzed in this study (Data Set S1).
XLS, 7.1M
Raw oxygenase and CAZyme annotations for the 26 genomes used in this study (Data Set S2).
XLS, 67K
Raw AAI values calculated as part of this study (Data Set S3).
XLS, 2.7M
Raw KEGG annotations generated as part of this study (Data Set S4).
XLS, 21K