Supplementary Table 3: RAD-seq genotypes of FY4 x Sigma-1278b (pilot) progeny strains (no imputation) #Allele calls:0=no data;1=Parent 1;2=Parent 2; 3,4,5=mixed (equal support, P1>P2, P2>P1) #Strain Tetrad Total_Reads Consensus_Barcode Consensus_Count Total_Barcode_Count No_Barcodes Deep_Markers (>10-fold read depth) Mixed_Deep chr01 chr01 chr01 chr01 chr01 chr01 chr01 chr01 chr01 chr01 chr01 chr01 chr01 chr01 chr01 chr01 chr01 chr01 chr01 chr02 chr02 chr02 chr02 chr02 chr02 chr02 chr02 chr02 chr02 chr02 chr02 chr02 chr02 chr02 chr02 chr02 chr02 chr02 chr02 chr02 chr03 chr03 chr03 chr03 chr03 chr03 chr03 chr03 chr03 chr03 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr04 chr05 chr05 chr05 chr05 chr05 chr05 chr05 chr05 chr05 chr05 chr05 chr05 chr05 chr05 chr05 chr05 chr05 chr05 chr05 chr05 chr05 chr05 chr06 chr06 chr06 chr06 chr06 chr06 chr06 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr07 chr08 chr08 chr08 chr08 chr08 chr08 chr08 chr08 chr08 chr08 chr08 chr08 chr08 chr08 chr08 chr08 chr08 chr08 chr08 chr08 chr08 chr08 chr09 chr09 chr09 chr09 chr09 chr09 chr09 chr09 chr09 chr09 chr09 chr09 chr09 chr09 chr09 chr09 chr09 chr09 chr09 chr09 chr09 chr09 chr09 chr09 chr09 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr13 chr14 chr14 chr14 chr14 chr14 chr14 chr14 chr14 chr14 chr14 chr14 chr14 chr14 chr14 chr14 chr14 chr14 chr14 chr14 chr14 chr14 chr14 chr14 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr15 chr16 chr16 chr16 chr16 chr16 chr16 chr16 chr16 chr16 chr16 chr16 chr16 chr16 chr16 chr16 chr16 chr16 chr16 chr16 chr16 chr16 chr16 chr16 chr16 8425 8464 43691 50432 51321 51371 52310 61451 73490 78346 78392 80554 103068 112136 113132 172280 180103 180134 182380 39405 39435 44047 70246 142364 192289 228581 341451 345172 350323 358049 367209 414046 438423 657562 657582 677110 678648 679168 689912 788441 43513 43528 51405 59465 230047 233245 234883 252425 258276 274530 199393 251506 263790 295469 304549 304677 324926 339115 351207 351214 351250 351862 354130 383227 383229 383874 409196 444672 445993 446016 464138 504540 504869 505795 512370 523418 523433 524270 524294 525868 525877 525883 526354 526357 551284 551290 553976 558325 680244 680252 760456 820541 848977 858496 870200 885734 890632 910905 917034 938759 1006510 1009143 1009163 1071771 1111239 1111246 1137538 1189463 1460932 1498235 1517502 1517708 15022 43744 43746 63934 119169 193011 193624 197415 199099 203996 207241 212373 227640 237481 240731 244404 256376 286966 286967 296063 464736 464776 22632 23390 30544 45764 45896 206552 206706 5754 10242 10243 11565 13009 14981 16997 20250 27799 45537 54455 54468 420974 422059 423778 426211 480161 482042 508419 523348 560083 785199 786491 800164 804950 871790 874582 874608 918971 1003183 1006061 76481 76534 85085 106822 106864 111182 114144 128904 131549 140026 140065 152121 159848 169617 169868 179026 179572 190024 190064 191348 191643 291318 32753 32809 44632 48693 48699 57890 72757 72762 72784 157808 215257 316151 319106 321421 322620 322623 326249 337321 341595 354945 359494 367929 386447 393829 419999 25563 31774 31779 31798 31824 35680 44980 47473 99851 118419 131968 143991 239866 301601 301613 543064 543075 552529 563528 564092 634727 634739 644161 653755 664824 136700 143865 176335 214047 216898 216902 229432 230640 244570 260129 327893 328424 332553 354092 368071 375750 383133 383136 386153 478973 574927 602166 607403 610106 624837 656331 656583 656640 32690 32702 105985 119276 232935 233743 237225 271300 313848 331041 331044 331984 332157 332566 345771 346407 353484 356647 364406 368698 376222 379914 383695 390963 407477 447261 493918 504507 529736 530015 555750 555795 558900 558945 559511 565625 568114 764796 788350 811433 814256 816162 816279 816285 876714 924847 930668 935974 948733 952187 964450 1022290 1025801 1039504 26166 26170 28854 31110 58825 58847 72351 78538 80403 88266 94190 100551 103812 117294 129083 132552 133117 136477 144771 176890 219326 308167 387028 391407 391419 438893 440668 442916 447319 449317 453366 519240 528910 528919 534586 535619 554314 554323 554339 563219 563933 567013 581966 583556 598520 601436 669658 674192 706063 706072 706735 817301 819393 826214 19943 122147 128908 130860 200616 204725 207991 218831 280722 281700 284616 284733 286433 436888 436906 456086 635688 687661 735440 737900 745867 756837 757207 195051 195072 205799 248560 248578 273332 357029 357367 357437 380309 380728 380751 390445 390482 437491 445216 466090 467149 485749 487663 495702 514397 514400 516244 516246 516336 516351 516539 537181 556870 557722 566165 567085 601702 643604 672196 764062 765690 796340 819348 829348 836249 859971 926531 930118 940041 954219 954231 981230 981233 981273 983849 983852 1005779 1007511 1017296 1035275 1037757 1038675 20774 20793 101962 106450 110058 140739 141900 141903 146533 156772 157700 451247 457330 459228 459273 723593 750456 750462 802039 813738 818815 818826 825571 841449 YPG4020 1 616779 ATACCTTTCGGTATG 157 174 17 473 2 2 2 2 2 2 2 2 5 2 2 2 0 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 2 2 2 2 2 2 2 2 2 5 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 0 2 2 2 2 2 2 0 2 2 2 2 0 1 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 0 2 2 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 0 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 2 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 0 2 0 2 2 2 2 2 2 2 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 YPG4040 1 1033401 ATACCTTTCGGTATG 285 317 24 519 2 4 3 1 1 1 1 0 1 1 1 1 1 1 2 2 2 2 2 2 1 0 1 1 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 0 2 2 2 2 2 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 0 1 1 1 1 0 0 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 0 2 2 2 2 0 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 0 2 2 2 2 2 2 2 2 2 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 0 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 YPG4066 1 896896 ATACCTTTCGGTATG 365 407 25 536 9 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 3 1 1 1 2 0 2 2 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 5 5 2 2 2 4 4 1 0 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 5 2 1 1 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 2 2 2 2 2 2 2 2 0 2 2 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 0 2 2 5 5 2 2 2 2 2 1 1 1 1 1 2 5 1 1 1 1 1 1 1 1 5 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 5 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 0 2 0 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 YPG4012 2 1253510 TTTACCATAACATA 499 525 21 540 7 1 1 2 2 2 2 2 2 2 2 2 0 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 5 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 5 5 2 2 2 4 5 1 1 1 1 1 2 3 4 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 2 2 2 2 5 2 2 2 2 2 2 2 1 2 1 1 1 1 0 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 4 1 1 1 1 5 5 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 4 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 5 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 YPG4028 2 792148 TTTACCATAACATA 415 433 16 474 2 2 2 1 1 1 1 0 1 1 1 1 0 1 1 1 2 2 2 2 1 0 1 1 2 2 2 1 0 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 2 2 2 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 0 1 1 1 1 1 1 1 1 1 1 2 0 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 1 1 1 1 1 1 1 1 0 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 0 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 0 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 3 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 2 1 1 1 1 1 2 2 2 2 2 2 2 2 0 0 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 YPG4057 2 920779 TTTACCATAACATA 324 336 8 535 3 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 0 1 1 1 2 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 5 2 2 2 2 3 3 2 2 2 2 2 2 2 2 2 1 1 1 1 2 2 2 2 2 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 0 2 2 2 2 2 2 2 2 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 4 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 0 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 5 1 2 2 2 2 2 2 1 1 1 1 1 0 2 2 2 2 2 2 2 2 2 2 0 2 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 2 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 2 2 2 2 2 2 2 2 2 2 2 4 1 1 1 1 1 1 1 1 YPG4072 2 1194920 TTTACCATAACATA 482 508 21 579 6 1 1 1 1 1 0 1 2 2 2 2 2 2 2 2 4 1 1 1 1 0 1 2 1 1 1 2 5 2 2 2 2 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 1 1 1 1 1 0 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 5 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 0 2 2 2 2 1 0 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 2 2 2 5 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 4 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 2 2 2 2 2 0 2 0 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 0 0 1 1 2 2 2 2 2 2 2 2 2 2 5 5 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 YPG4056 3 605770 AAAGGGAAGTAGGAT 444 481 21 514 10 2 2 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 2 2 2 2 2 5 5 2 2 2 2 1 2 2 5 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 5 2 2 2 5 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 0 3 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 2 2 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 0 2 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 2 2 0 2 2 2 2 2 2 2 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 5 2 2 2 2 2 2 2 2 1 5 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 0 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 5 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 0 2 2 2 5 2 2 0 2 2 2 2 2 2 2 2 2 5 2 2 2 2 2 2 2 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 2 2 2 2 2 2 2 2 0 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 2 2 2 2 5 2 5 2 2 2 2 2 1 1 1 1 1 1 1 1 2 YPG4060 3 605399 AAAGGGAAGTAGGAT 375 417 28 485 17 1 1 1 1 1 0 1 1 1 1 0 0 1 1 1 2 2 2 2 1 0 1 1 1 1 1 1 2 1 1 1 1 1 4 4 1 1 1 2 1 1 1 1 1 2 2 2 2 2 2 1 2 2 2 2 2 2 5 2 2 2 2 4 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 5 5 2 2 2 2 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 5 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 0 1 1 1 2 2 4 4 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 2 2 1 1 1 3 1 1 1 1 1 1 1 1 0 1 2 2 2 2 2 2 0 2 2 2 1 0 2 2 2 2 2 2 2 2 2 0 0 2 2 2 2 2 5 2 2 2 2 2 0 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 1 1 1 2 2 2 5 2 2 2 2 2 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 0 2 5 1 1 1 1 2 2 2 2 1 1 1 4 4 1 1 1 1 1 1 4 1 1 1 2 2 5 2 2 1 1 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 2 2 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 4 1 4 4 4 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 0 0 1 1 1 5 2 2 2 2 2 2 0 2 2 2 2 2 2 0 0 2 2 2 2 2 2 2 2 2 1 0 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 5 2 5 5 2 1 2 2 2 2 2 2 2 2 2 0 2 2 2 2 YPG4069 3 531482 AAAGGGAAGTAGGAT 91 99 7 444 7 0 2 2 2 2 0 0 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 1 1 1 2 2 2 5 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 5 5 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 0 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 2 1 1 1 1 1 1 1 1 2 2 1 2 2 2 2 2 2 2 2 0 2 2 2 2 2 2 2 0 2 2 2 5 2 2 2 2 2 0 2 2 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 3 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 5 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 1 1 0 4 1 1 1 4 1 1 1 1 2 2 2 1 2 2 2 2 1 1 2 2 2 2 2 0 5 0 2 5 2 2 2 2 1 1 0 1 2 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 YPG4008 4 874179 CTAACCCAGTTTTAT 472 499 18 560 2 0 0 2 2 2 2 2 2 1 1 1 0 1 1 1 1 1 1 1 2 0 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 1 1 5 4 1 1 1 2 2 2 2 5 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 0 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 0 2 2 2 2 2 2 2 1 1 1 2 2 2 2 0 2 2 2 2 2 2 2 2 2 2 2 0 1 1 1 1 1 1 1 1 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 2 0 2 2 2 2 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 0 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 0 2 2 2 YPG4018 4 598597 CTAACCCAGTTTTAT 168 177 9 444 4 1 1 1 1 1 0 1 1 2 2 2 0 2 2 2 2 2 2 2 2 0 2 2 2 2 2 2 0 2 2 2 2 2 2 2 2 2 2 2 2 2 2 5 2 1 1 1 1 1 1 2 2 2 2 0 2 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