orgcode	Species name, qualifier	Reference(s) (from GenBank .gbk file)
TW08	Tropheryma whipplei, TW08/27	Lancet 361, 627-634 (2003)
aaeo	Aquifex aeolicus	Nature 392 (6674), 353-358 (1998)
aful	Archaeoglobus fulgidus	Nature 390 (6658), 364-370 (1997)
agrc	Agrobacterium tumefaciens, circular chromosome	Science 294 (5550), 2317-2323 (2001)
aper	Aeropyrum pernix	DNA Res. 6 (2), 83-101 (1999)
babp	Buchnera aphidicola, (Baizongia pistaciae)	Proc. Natl. Acad. Sci. U.S.A. 100 (2), 581-586 (2003)
bant	Bacillus anthracis, str. Ames	Nature 423, 81-86 (2003)
bbur	Borrelia burgdorferi	Nature 390 (6660), 580-586 (1997)
bcer	Bacillus cereus, ATCC 14579	Nature (2003) In press
bhal	Bacillus halodurans	Extremophiles 3 (1), 21-28 (1999)	Extremophiles 3 (1), 29-34 (1999)	Biosci. Biotechnol. Biochem. 63 (2), 452-455 (1999)	Biosci. Biotechnol. Biochem. 63, 943-945 (1999)	(in) Extremophiles in deep-sea environments (Ed.);	Biosci. Biotechnol. Biochem. 63 (6), 1134-1137 (1999)	Extremophiles 3 (3), 227-233 (1999)	Extremophiles 4 (2), 99-108 (2000)	Extremophiles 4 (4), 209-214 (2000)	Nucleic Acids Res. 28 (21), 4317-4331 (2000)
bjap	Bradyrhizobium japonicum	DNA Res. 9 (6), 189-197 (2002)
blon	Bifidobacterium longum, NCC2705	Proc. Natl. Acad. Sci. U.S.A. 99 (22), 14422-14427 (2002)
bme1	Brucella melitensis, chromosome I	Proc. Natl. Acad. Sci. U.S.A. 99 (1), 443-448 (2002)	Proc. Natl. Acad. Sci. U.S.A. 99 (20), 13148-13153 (2002)
bme2	Brucella melitensis, chromosome II	Proc. Natl. Acad. Sci. U.S.A. 99 (1), 443-448 (2002)	Proc. Natl. Acad. Sci. U.S.A. 99 (20), 13148-13153 (2002)
bsu1	Brucella suis, 1330 chromosome I	Proc. Natl. Acad. Sci. U.S.A. 99 (20), 13148-13153 (2002)
bsu2	Brucella suis, 1330 chromosome II	Proc. Natl. Acad. Sci. U.S.A. 99 (20), 13148-13153 (2002)
bsub	Bacillus subtilis	Nature 390 (6657), 249-256 (1997)
bthe	Bacteroides thetaiotaomicron, VPI-5482	Science 299 (5615), 2074-2076 (2003)
bucn	Buchnera sp.	Nature 407 (6800), 81-86 (2000)
cace	Clostridium acetobutylicum, ATCC824	J. Bacteriol. 183 (16), 4823-4838 (2001)
cbur	Coxiella burnetii, RSA 493	Proc. Natl. Acad. Sci. U.S.A. (2003) In press
ccav	Chlamydophila caviae, GPIC	Nucleic Acids Res. 31 (8), 2134-2147 (2003)
ccre	Caulobacter crescentus, CB15	Proc. Natl. Acad. Sci. U.S.A. 98 (7), 4136-4141 (2001)
ceff	Corynebacterium efficiens, YS-314	Unpublished (2002)
cglu	Corynebacterium glutamicum, ATCC 13032	Unpublished
cjej	Campylobacter jejuni	Nature 403 (6770), 665-668 (2000)
cmur	Chlamydia muridarum	Nucleic Acids Res. 28 (6), 1397-1406 (2000)
cper	Clostridium perfringens	Proc. Natl. Acad. Sci. U.S.A. 99 (2), 996-1001 (2002)
cpnA	Chlamydia pneumoniae, AR39 Main Chromosome.	Nucleic Acids Res. 28 (6), 1397-1406 (2000)
cpnC	Chlamydophila pneumoniae, CWL029	Nat. Genet. 21 (4), 385-389 (1999)
ctep	Chlorobium tepidum, TLS	Proc. Natl. Acad. Sci. U.S.A. (2002)
ctet	Clostridium tetani, E88	Proc. Natl. Acad. Sci. U.S.A. 100 (3), 1316-1321 (2003)
ctra	Chlamydia trachomatis	Science 282 (5389), 754-759 (1998)
dra2	Deinococcus radiodurans, chromosome 2	Science 286 (5444), 1571-1577 (1999)
drad	Deinococcus radiodurans, chromosome 1	Science 286 (5444), 1571-1577 (1999)
ecol	Escherichia coli, K12	Science 277 (5331), 1453-1474 (1997)
efae	Enterococcus faecalis, V583	Science 299 (5615), 2071-2074 (2003)
fnuc	Fusobacterium nucleatum, subsp. nucleatum ATCC 25586, complete	J. Bacteriol. 184 (7), 2005-2018 (2002)
halo	Halobacterium sp., NRC-1	Proc. Natl. Acad. Sci. U.S.A. 97 (22), 12176-12181 (2000)
hinf	Haemophilus influenzae, Rd	Science 269 (5223), 496-512 (1995)	Curr. Biol. 6 (3), 279-291 (1996)	Electrophoresis 21 (2), 411-429 (2000)
hpy2	Helicobacter pylori, 26695	Nature 388 (6642), 539-547 (1997)
lin1	Leptospira interrogans, serovar lai str. 56601 chromosome I,	Unpublished
lin2	Leptospira interrogans, serovar lai str. 56601 chromosome II,	Unpublished
linn	Listeria innocua, Clip11262	Science 294 (5543), 849-852 (2001)
llac	Lactococcus lactis, subsp. lactis	Genome Res. 11 (5), 731-753 (2001)
lmon	Listeria monocytogenes, strain EGD	Science 294 (5543), 849-852 (2001)
lpla	Lactobacillus plantarum, WCFS1	Online Publication
mace	Methanosarcina acetivorans, str. C2A	Genome Res. 12 (4), 532-542 (2002)
mc58	Neisseria meningitidis, serogroup B strain MC58	Science 287 (5459), 1809-1815 (2000)
mgen	Mycoplasma genitalium	J. Bacteriol. 175 (24), 7918-7930 (1993)	Science 270 (5235), 397-403 (1995)	Proc. Natl. Acad. Sci. U.S.A. 92 (25), 11829-11833 (1995)
mjan	Methanococcus jannaschii	Science 273 (5278), 1058-1073 (1996)
mkan	Methanopyrus kandleri, AV19	Proc. Natl. Acad. Sci. U.S.A. 99 (7), 4644-4649 (2002)
mlep	Mycobacterium leprae, strain TN	Nature 409 (6823), 1007-1011 (2001)
mlot	Mesorhizobium loti	DNA Res. 7 (6), 331-338 (2000)
mmaz	Methanosarcina mazei, strain Goe1	J. Mol. Microbiol. Biotechnol. (2002) In press
mpen	Mycoplasma penetrans	Nucleic Acids Res. 30 (23), 5293-5300 (2002)
mpne	Mycoplasma pneumoniae	Nucleic Acids Res. 24 (22), 4420-4449 (1996)	Nucleic Acids Res. 28 (17), 3278-3288 (2000)
mpul	Mycoplasma pulmonis	Nucleic Acids Res. 29 (10), 2145-2153 (2001)
mtbc	Mycobacterium tuberculosis, CDC1551	Unpublished
mthe	Methanobacterium thermoautotrophicum, str. Delta H	J. Bacteriol. 179 (22), 7135-7155 (1997)
neur	Nitrosomonas europaea, ATCC 19718	J. Bacteriol. 185 (9), 2759-2773 (2003)
nost	Nostoc sp., PCC 7120	DNA Res. 8 (5), 205-213 (2001)
oihe	Oceanobacillus iheyensis, HTE831	FEMS Microbiol. Lett. 205 (2), 291-297 (2001)	Nucleic Acids Res. 30 (18), 3927-3935 (2002)
paby	Pyrococcus abyssi	Unpublished
paer	Pseudomonas aeruginosa, PA01	Nature 406 (6799), 959-964 (2000)
pfur	Pyrococcus furiosus, DSM 3638	Genetics 152 (4), 1299-1305 (1999)	Mol. Microbiol. 38 (4), 684-693 (2000)	Meth. Enzymol. 330, 134-157 (2001)	Unpublished
phor	Pyrococcus horikoshii	DNA Res. 5 (2), 55-76 (1998)	DNA Res. 5 (2), 147-155 (1998)
pmul	Pasteurella multocida	Proc. Natl. Acad. Sci. U.S.A. 98 (6), 3460-3465 (2001)
pput	Pseudomonas putida, KT2440	Environ. Microbiol. 4 (12), 799-808 (2002)
psyr	Pseudomonas syringae, pv. tomato str. DC3000	Unpublished
pyae	Pyrobaculum aerophilum	Proc. Natl. Acad. Sci. U.S.A. 99 (2), 984-989 (2002)
rcon	Rickettsia conorii, Malish 7	Science 290 (5490), 347-350 (2000)	Science 291 (5502), 252-253 (2001)	Science 293 (5537), 2093-2098 (2001)
rpro	Rickettsia prowazekii, strain Madrid E	Nature 396 (6707), 133-140 (1998)
rsol	Ralstonia solanacearum	Nature 415 (6871), 497-502 (2002)
sag2	Streptococcus agalactiae, 2603V/R	Proc. Natl. Acad. Sci. U.S.A. 99 (19), 12391-12396 (2002)
sauM	Staphylococcus aureus, strain Mu50	Lancet 357 (9264), 1225-1240 (2001)
save	Streptomyces avermitilis, MA-4680	Proc. Natl. Acad. Sci. U.S.A. 98 (21), 12215-12220 (2001)	Nat. Biotechnol. (2003) In press
scoe	Streptomyces coelicolor, A3(2)	Mol. Microbiol. 21 (1), 77-96 (1996)	Nature 417 (6885), 141-147 (2002)	Unpublished
sepi	Staphylococcus epidermidis, ATCC 12228	sepi
shig	Shigella flexneri, 2a str. 301	Nucleic Acids Res. 30 (20) (2002) In press
smel	Sinorhizobium meliloti, 1021 complete genomes.	Science 293 (5530), 668-672 (2001)	Proc. Natl. Acad. Sci. U.S.A. 98 (17), 9877-9882 (2001)
smut	Streptococcus mutans, UA159	Proc. Natl. Acad. Sci. U.S.A. 99 (22), 14434-14439 (2002)
sone	Shewanella oneidensis, MR-1	Nat. Biotechnol. 20 (11), 1118-1123 (2002)
spcc	Synechocystis, PCC6803	DNA Res. 2 (4), 153-166 (1995)	DNA Res. 3 (3), 109-136 (1996)
spnR	Streptococcus pneumoniae, R6	J. Bacteriol. 183 (19), 5709-5717 (2001)
spyo	Streptococcus pyogenes	Proc. Natl. Acad. Sci. U.S.A. 98 (8), 4658-4663 (2001)
ssol	Sulfolobus solfataricus	Proc. Natl. Acad. Sci. U.S.A. 98 (14), 7835-7840 (2001)
stok	Sulfolobus tokodaii	DNA Res. 8 (4), 123-140 (2001)
styp	Salmonella enterica, subsp. enterica serovar Typhi	Nature 413 (6858), 848-852 (2001)
taci	Thermoplasma acidophilum	Nature 407 (6803), 508-513 (2000)
telo	Thermosynechococcus elongatus, BP-1	DNA Res. (2002) In press
tmar	Thermotoga maritima	Nature 399 (6734), 323-329 (1999)
tpal	Treponema pallidum	Science 281 (5375), 375-388 (1998)
tten	Thermoanaerobacter tengcongensis, strain MB4T	Genome Res. 12 (5), 689-700 (2002)
tvol	Thermoplasma volcanium	Proc. Jpn. Acad. 75, 213-218 (1999)	Proc. Natl. Acad. Sci. U.S.A. 97 (26), 14257-14262 (2000)
uure	Ureaplasma urealyticum	Nature 407 (6805), 757-762 (2000)
vib1	Vibrio cholerae, chromosome I, complete chromosome.	Nature 406 (6795), 477-483 (2000)
vib2	Vibrio cholerae, chromosome II, complete chromosome.	Nature 406 (6795), 477-483 (2000)
vpa1	Vibrio parahaemolyticus, RIMD 2210633 chromosome I, complete	J. Clin. Microbiol. 38 (6), 2156-2161 (2000)	Lancet 361 (9359), 743-749 (2003)
vpa2	Vibrio parahaemolyticus, RIMD 2210633 chromosome II, complete	J. Clin. Microbiol. 38 (6), 2156-2161 (2000)	Lancet 361 (9359), 743-749 (2003)
vvu1	Vibrio vulnificus, CMCP6 chromosome I	Unpublished
vvu2	Vibrio vulnificus, CMCP6 chromosome II	Unpublished
wigg	Wigglesworthia brevipalpis	Online Publication
xcam	Xanthomonas campestris, pv. campestris str. ATCC 33913, complete	Nature 417 (6887), 459-463 (2002)
xcit	Xanthomonas axonopodis, pv. citri str. 306	Nature 417 (6887), 459-463 (2002)
xfas	Xylella fastidiosa, 9a5c	Nature 406 (6792), 151-157 (2000)
ypes	Yersinia pestis, strain CO92	Nature 413 (6855), 523-527 (2001)