Targeted Sequence Capture Provides Insight into Genome Structure and Genetics of Male Sterility in a Gynodioecious Diploid Strawberry, Fragaria vesca ssp. bracteata (Rosaceae)

Supporting Information for Tennessen et al., 2013

Files in this Data Supplement:

  • Supporting Information - Figures S1-S3, Tables S1-S3, and Files S1-S3 (PDF, 2 MB)
  • Figure S1 - Genotyping errors and missing data (PDF, 371 KB)
  • Figure S2 - Linkage groups in F. vesca ssp. bracteata plotted against the F. vesca ssp. vesca reference genome (FvH4) (PDF, 1 MB)
  • Figure S3 - Recombination rates are very similar in both parental maps (PDF, 283 KB)
  • Table S1 - Targeted capture Illumina sequencing data for two parents and 48 offspring (PDF, 242 KB)
  • Table S2 - Primer sequences and scaffold coordinates for nine informative polymorphic sites (PDF, 261 KB)
  • Table S3 - Incongruities between FvH4 and Fvb (PDF, 288 KB)
  • File S1 - FASTA file of the 6575 targeted regions (.zip, 445 KB)
  • File S2 - Variant call format (vcf) file of all targeted capture genotypes used in linkage mapping (.zip, 2 MB)
  • File S3 - Map position (Fvb, in cM) and reference genome position (FvH4, in bp) for all markers (.txt, 356 KB)