Sample	Replicate	Sequencing type	Number of  cycles	"Read number (processed, see Methods)"
mOSN 5hmC 	1	Single-end	42	21948297
mOSN 5hmC 	2	Paired-end	50	60960896
GBC 5hmC	1	Single-end	42	20460620
GBC 5hmC	2	Paired-end	50	46184358
HBC 5hmC	1	Single-end	42	20548870
HBC 5hmC	2	Paired-end	50	49598046
mOSN 5mC	1	Single-end	42	17437633
GBC 5mC	1	Single-end	42	22660035
HBC 5mC	1	Single-end	42	20621144
mOSN mRNA	1	Single-end	35	26211869
GBC mRNA	1	Single-end	35	30373962
HBC mRNA	1	Paired-end	75	56327264
O/Tet3 5hmC	1	Paired-end	50	40063153
O/Tet3 5hmC	2	Paired-end	50	56159167
OMP ribominus RNA	1	Paired-end	50	57387424
OMP ribominus RNA	2	Paired-end	50	80570728
O/Tet3 ribominus RNA	1	Paired-end	50	30423788
O/Tet3 ribominus RNA	2	Paired-end	50	79079380